Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23045.t1 | GAU17568.1 | 64.1 | 334 | 105 | 5 | 1 | 330 | 404 | 726 | 4.20E-108 | 401.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23045.t1 | Q9FPT1 | 46.2 | 130 | 67 | 3 | 10 | 138 | 56 | 183 | 1.3e-22 | 108.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23045.t1 | A0A392MFG0 | 65.0 | 334 | 102 | 5 | 1 | 330 | 4 | 326 | 2.9e-111 | 411.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051919 | MS.gene23045 | 0.979232 | 1.61E-147 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23045 | MS.gene030026 | PPI |
| MS.gene23045 | MS.gene038342 | PPI |
| MS.gene038323 | MS.gene23045 | PPI |
| MS.gene23045 | MS.gene038326 | PPI |
| MS.gene23045 | MS.gene017083 | PPI |
| MS.gene23045 | MS.gene038328 | PPI |
| MS.gene23045 | MS.gene038330 | PPI |
| MS.gene23045 | MS.gene057065 | PPI |
| MS.gene23045 | MS.gene038333 | PPI |
| MS.gene23045 | MS.gene038336 | PPI |
| MS.gene23045 | MS.gene030034 | PPI |
| MS.gene23045 | MS.gene017102 | PPI |
| MS.gene23045 | MS.gene038324 | PPI |
| MS.gene23045 | MS.gene057066 | PPI |
| MS.gene23045 | MS.gene030029 | PPI |
| MS.gene23045 | MS.gene030042 | PPI |
| MS.gene23045 | MS.gene057069 | PPI |
| MS.gene23045 | MS.gene017101 | PPI |
| MS.gene23045 | MS.gene038323 | PPI |
| MS.gene23045 | MS.gene017099 | PPI |
| MS.gene23045 | MS.gene017115 | PPI |
| MS.gene23045 | MS.gene030033 | PPI |
| MS.gene23045 | MS.gene030037 | PPI |
| MS.gene23045 | MS.gene038300 | PPI |
| MS.gene23045 | MS.gene038327 | PPI |
| MS.gene23045 | MS.gene057070 | PPI |
| MS.gene23045 | MS.gene030045 | PPI |
| MS.gene23045 | MS.gene017100 | PPI |
| MS.gene038336 | MS.gene23045 | PPI |
| MS.gene23045 | MS.gene057090 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23045.t1 | MTR_7g107200 | 45.333 | 375 | 159 | 5 | 1 | 329 | 1 | 375 | 4.17e-108 | 320 |
| MS.gene23045.t1 | MTR_1g042160 | 50.898 | 334 | 132 | 8 | 1 | 328 | 1 | 308 | 5.71e-103 | 305 |
| MS.gene23045.t1 | MTR_7g107160 | 53.529 | 340 | 119 | 12 | 9 | 331 | 129 | 446 | 6.78e-101 | 304 |
| MS.gene23045.t1 | MTR_7g107160 | 50.388 | 129 | 44 | 3 | 66 | 174 | 1 | 129 | 8.14e-31 | 121 |
| MS.gene23045.t1 | MTR_8g011730 | 36.415 | 357 | 175 | 10 | 9 | 329 | 13 | 353 | 1.31e-62 | 203 |
| MS.gene23045.t1 | MTR_7g107170 | 53.416 | 161 | 67 | 1 | 168 | 328 | 111 | 263 | 4.50e-48 | 162 |
| MS.gene23045.t1 | MTR_7g107170 | 73.563 | 87 | 23 | 0 | 233 | 319 | 1 | 87 | 3.71e-32 | 121 |
| MS.gene23045.t1 | MTR_2g034780 | 37.427 | 171 | 100 | 3 | 154 | 323 | 97 | 261 | 3.22e-28 | 110 |
| MS.gene23045.t1 | MTR_3g079840 | 40.141 | 142 | 79 | 4 | 1 | 138 | 45 | 184 | 3.00e-26 | 110 |
| MS.gene23045.t1 | MTR_3g079840 | 40.141 | 142 | 79 | 4 | 1 | 138 | 44 | 183 | 3.09e-26 | 110 |
| MS.gene23045.t1 | MTR_5g086700 | 38.235 | 136 | 81 | 3 | 4 | 138 | 55 | 188 | 1.09e-25 | 108 |
| MS.gene23045.t1 | MTR_5g086700 | 38.235 | 136 | 81 | 3 | 4 | 138 | 55 | 188 | 1.13e-25 | 108 |
| MS.gene23045.t1 | MTR_1g041240 | 40.769 | 130 | 73 | 3 | 10 | 138 | 58 | 184 | 4.66e-24 | 103 |
| MS.gene23045.t1 | MTR_1g041240 | 40.769 | 130 | 73 | 3 | 10 | 138 | 57 | 183 | 4.70e-24 | 103 |
| MS.gene23045.t1 | MTR_1g041240 | 40.769 | 130 | 73 | 3 | 10 | 138 | 59 | 185 | 4.70e-24 | 103 |
| MS.gene23045.t1 | MTR_5g091450 | 36.508 | 126 | 78 | 2 | 10 | 134 | 33 | 157 | 3.96e-23 | 100 |
| MS.gene23045.t1 | MTR_5g091180 | 33.557 | 149 | 92 | 4 | 1 | 145 | 34 | 179 | 1.00e-19 | 90.5 |
| MS.gene23045.t1 | MTR_5g091550 | 34.646 | 127 | 80 | 3 | 9 | 134 | 18 | 142 | 3.22e-16 | 79.7 |
| MS.gene23045.t1 | MTR_5g091550 | 34.646 | 127 | 80 | 3 | 9 | 134 | 18 | 142 | 3.38e-16 | 79.7 |
| MS.gene23045.t1 | MTR_3g106700 | 36.170 | 141 | 80 | 4 | 10 | 140 | 406 | 546 | 8.93e-14 | 72.8 |
| MS.gene23045.t1 | MTR_1g073800 | 32.061 | 131 | 84 | 5 | 10 | 138 | 49 | 176 | 4.20e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23045.t1 | AT5G06600 | 44.366 | 142 | 73 | 4 | 1 | 138 | 43 | 182 | 2.86e-27 | 113 |
| MS.gene23045.t1 | AT5G06600 | 44.366 | 142 | 73 | 4 | 1 | 138 | 44 | 183 | 2.86e-27 | 113 |
| MS.gene23045.t1 | AT5G06600 | 44.366 | 142 | 73 | 4 | 1 | 138 | 44 | 183 | 3.11e-27 | 112 |
| MS.gene23045.t1 | AT3G11910 | 43.846 | 130 | 70 | 3 | 10 | 138 | 54 | 181 | 1.77e-25 | 107 |
| MS.gene23045.t1 | AT3G11910 | 43.846 | 130 | 70 | 3 | 10 | 138 | 54 | 181 | 1.77e-25 | 107 |
| MS.gene23045.t1 | AT3G11910 | 43.846 | 130 | 70 | 3 | 10 | 138 | 55 | 182 | 1.78e-25 | 107 |
| MS.gene23045.t1 | AT3G11910 | 43.846 | 130 | 70 | 3 | 10 | 138 | 55 | 182 | 1.78e-25 | 107 |
| MS.gene23045.t1 | AT3G58340 | 25.430 | 291 | 169 | 9 | 5 | 269 | 3 | 271 | 5.51e-17 | 80.9 |
| MS.gene23045.t1 | AT3G58340 | 24.490 | 294 | 178 | 9 | 5 | 269 | 3 | 281 | 6.28e-16 | 77.8 |
| MS.gene23045.t1 | AT3G58220 | 25.118 | 211 | 144 | 6 | 11 | 218 | 13 | 212 | 2.05e-14 | 73.2 |
| MS.gene23045.t1 | AT3G58360 | 24.407 | 295 | 193 | 8 | 9 | 294 | 7 | 280 | 3.74e-14 | 72.4 |
| MS.gene23045.t1 | AT3G58370 | 27.928 | 222 | 135 | 9 | 1 | 218 | 1 | 201 | 6.18e-14 | 71.6 |
| MS.gene23045.t1 | AT3G58270 | 33.846 | 130 | 83 | 3 | 8 | 136 | 6 | 133 | 5.64e-13 | 69.3 |
| MS.gene23045.t1 | AT3G58270 | 33.846 | 130 | 83 | 3 | 8 | 136 | 6 | 133 | 5.64e-13 | 69.3 |
| MS.gene23045.t1 | AT3G58270 | 33.846 | 130 | 83 | 3 | 8 | 136 | 6 | 133 | 5.64e-13 | 69.3 |
| MS.gene23045.t1 | AT3G58220 | 21.649 | 291 | 183 | 6 | 11 | 259 | 13 | 300 | 7.14e-13 | 68.9 |
| MS.gene23045.t1 | AT2G25320 | 34.177 | 158 | 93 | 5 | 10 | 157 | 404 | 560 | 1.46e-12 | 69.3 |
| MS.gene23045.t1 | AT2G25320 | 34.177 | 158 | 93 | 5 | 10 | 157 | 405 | 561 | 1.47e-12 | 69.3 |
| MS.gene23045.t1 | AT3G58240 | 25.240 | 313 | 206 | 11 | 8 | 302 | 6 | 308 | 2.05e-12 | 67.4 |
| MS.gene23045.t1 | AT3G58220 | 30.469 | 128 | 85 | 3 | 11 | 135 | 13 | 139 | 2.43e-12 | 67.8 |
| MS.gene23045.t1 | AT2G25320 | 34.177 | 158 | 93 | 5 | 10 | 157 | 405 | 561 | 3.52e-12 | 68.2 |
| MS.gene23045.t1 | AT3G58220 | 28.571 | 154 | 108 | 2 | 11 | 163 | 13 | 165 | 4.20e-12 | 66.6 |
| MS.gene23045.t1 | AT3G58220 | 28.986 | 138 | 96 | 2 | 11 | 147 | 13 | 149 | 4.24e-12 | 65.9 |
| MS.gene23045.t1 | AT3G44800 | 24.632 | 272 | 187 | 8 | 9 | 269 | 4 | 268 | 4.28e-12 | 66.6 |
| MS.gene23045.t1 | AT3G27040 | 27.737 | 137 | 97 | 2 | 7 | 142 | 6 | 141 | 9.85e-12 | 65.1 |
| MS.gene23045.t1 | AT3G58210 | 32.061 | 131 | 86 | 3 | 8 | 136 | 6 | 135 | 1.64e-11 | 64.7 |
| MS.gene23045.t1 | AT2G25330 | 30.208 | 192 | 123 | 5 | 10 | 190 | 359 | 550 | 4.13e-11 | 64.3 |
Find 65 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGGCCTTCTTCTATTTC+TGG | 0.076592 | 7.2:-7114388 | None:intergenic |
| CAATGCAAGTAAGGATTATT+TGG | 0.155785 | 7.2:+7114207 | MS.gene23045:CDS |
| TTTAGAAAAGAAAAGTTATT+TGG | 0.216214 | 7.2:+7114708 | MS.gene23045:CDS |
| CAAGTCAAATTGAAATTAAA+TGG | 0.219404 | 7.2:-7114661 | None:intergenic |
| TTCACAATAAACCCTCTTTC+AGG | 0.229550 | 7.2:-7114265 | None:intergenic |
| CCAAAGTCTCGACCACATTT+TGG | 0.231606 | 7.2:-7114411 | None:intergenic |
| CTCTCCCCTTTCTTGTCTTA+AGG | 0.269117 | 7.2:-7114585 | None:intergenic |
| GAACTTCTCTCACTTGAATA+AGG | 0.276609 | 7.2:+7112882 | MS.gene23045:CDS |
| AGTAAGGATTATTTGGGTTT+CGG | 0.339740 | 7.2:+7114214 | MS.gene23045:CDS |
| TTCCTCTAGTAATGGAATAA+AGG | 0.345498 | 7.2:-7114464 | None:intergenic |
| GTGAAGGATGCTTGTATTGT+TGG | 0.355564 | 7.2:+7114283 | MS.gene23045:CDS |
| CCTTCTTCTATTTCTGGCTC+TGG | 0.363990 | 7.2:-7114382 | None:intergenic |
| GGATGATTTGTCTGTATCAA+TGG | 0.368177 | 7.2:+7113040 | MS.gene23045:intron |
| TACTCTGAGCCTTTCATCCT+TGG | 0.374548 | 7.2:+7112916 | MS.gene23045:CDS |
| CCAAAATGTGGTCGAGACTT+TGG | 0.376541 | 7.2:+7114411 | MS.gene23045:CDS |
| AATGCAAGTAAGGATTATTT+GGG | 0.389997 | 7.2:+7114208 | MS.gene23045:CDS |
| TGATGCAGCAAGAGACTTGT+TGG | 0.401616 | 7.2:+7114831 | MS.gene23045:CDS |
| GATGATTTGTCTGTATCAAT+GGG | 0.407748 | 7.2:+7113041 | MS.gene23045:CDS |
| GGAATGGGCATTCACTGCTC+TGG | 0.408219 | 7.2:+7114546 | MS.gene23045:CDS |
| CTTTGAGTTCAATGCAAGTA+AGG | 0.409663 | 7.2:+7114198 | MS.gene23045:CDS |
| AACTCGCAGGTTTAGGGAAT+GGG | 0.417770 | 7.2:+7114531 | MS.gene23045:CDS |
| GTACACTGCTAATATGTCTC+AGG | 0.423152 | 7.2:+7113107 | MS.gene23045:CDS |
| TCTCTCACTTGAATAAGGTT+AGG | 0.439144 | 7.2:+7112887 | MS.gene23045:CDS |
| GGTCGAGACTTTGGATTTCA+AGG | 0.447344 | 7.2:+7114420 | MS.gene23045:CDS |
| TATTTCCTTAAGACAAGAAA+GGG | 0.449111 | 7.2:+7114580 | MS.gene23045:CDS |
| GTTGAAGCAGTTAAGTTAGC+TGG | 0.452845 | 7.2:-7114355 | None:intergenic |
| GGTAGCTCTAGAGTTGGAAT+TGG | 0.453675 | 7.2:+7114768 | MS.gene23045:CDS |
| AAGTTATTTGGAGAAATTGA+AGG | 0.459258 | 7.2:+7114720 | MS.gene23045:CDS |
| CATTTAATTTCAATTTGACT+TGG | 0.466420 | 7.2:+7114662 | MS.gene23045:CDS |
| GTTGGAATTGGAAAGGCTAA+TGG | 0.469386 | 7.2:+7114780 | MS.gene23045:CDS |
| ATGGATTTGGATGCTGAACT+AGG | 0.469976 | 7.2:+7114874 | MS.gene23045:CDS |
| TTATTTCCTTAAGACAAGAA+AGG | 0.484168 | 7.2:+7114579 | MS.gene23045:CDS |
| TCTGAGCCTTTCATCCTTGG+CGG | 0.492833 | 7.2:+7112919 | MS.gene23045:CDS |
| GAGCTTCTTGATCCTGAAAG+AGG | 0.499293 | 7.2:+7114253 | MS.gene23045:CDS |
| TCATCCTTGGCGGCTATCCA+TGG | 0.501161 | 7.2:+7112929 | MS.gene23045:CDS |
| AAACTCGCAGGTTTAGGGAA+TGG | 0.505546 | 7.2:+7114530 | MS.gene23045:CDS |
| GTCGAGACTTTGGATTTCAA+GGG | 0.521430 | 7.2:+7114421 | MS.gene23045:CDS |
| ACCAGCAAGACACTTACAAA+AGG | 0.526631 | 7.2:+7113180 | MS.gene23045:CDS |
| TTTGGAGAAATTGAAGGAGG+CGG | 0.535745 | 7.2:+7114726 | MS.gene23045:CDS |
| AGCTTCTTGATCCTGAAAGA+GGG | 0.537917 | 7.2:+7114254 | MS.gene23045:CDS |
| GAATGGGCATTCACTGCTCT+GGG | 0.540430 | 7.2:+7114547 | MS.gene23045:CDS |
| TCCTGACACAAAATAAGTGA+AGG | 0.543719 | 7.2:-7114502 | None:intergenic |
| GAACATACTTCCTCTAGTAA+TGG | 0.544728 | 7.2:-7114472 | None:intergenic |
| TGAAAGAGGGTTTATTGTGA+AGG | 0.555016 | 7.2:+7114267 | MS.gene23045:CDS |
| TAATGTGGTAGCTCTAGAGT+TGG | 0.557259 | 7.2:+7114762 | MS.gene23045:CDS |
| ATTGGAAAGGCTAATGGTAA+AGG | 0.559107 | 7.2:+7114786 | MS.gene23045:CDS |
| CCAGAGCCAGAAATAGAAGA+AGG | 0.562182 | 7.2:+7114382 | MS.gene23045:CDS |
| GGATAGCCGCCAAGGATGAA+AGG | 0.566403 | 7.2:-7112925 | None:intergenic |
| CTCTAGAGTTGGAATTGGAA+AGG | 0.571519 | 7.2:+7114773 | MS.gene23045:CDS |
| TCTAAAGCAGATTGAACACA+AGG | 0.573483 | 7.2:-7114691 | None:intergenic |
| CGAGCGATGAGAAGTTCACA+TGG | 0.574026 | 7.2:+7112851 | MS.gene23045:CDS |
| ACTTTGGATTTCAAGGGTGT+AGG | 0.575922 | 7.2:+7114427 | MS.gene23045:CDS |
| GGCCTTTATTCCATTACTAG+AGG | 0.578841 | 7.2:+7114462 | MS.gene23045:CDS |
| CATACCATGGATAGCCGCCA+AGG | 0.606316 | 7.2:-7112933 | None:intergenic |
| CTGCTAATATGTCTCAGGGA+TGG | 0.608102 | 7.2:+7113112 | MS.gene23045:CDS |
| CCTGACACAAAATAAGTGAA+GGG | 0.611997 | 7.2:-7114501 | None:intergenic |
| TGCAGCAAGAGACTTGTTGG+AGG | 0.618326 | 7.2:+7114834 | MS.gene23045:CDS |
| TTATTTGGAGAAATTGAAGG+AGG | 0.619666 | 7.2:+7114723 | MS.gene23045:CDS |
| ATTTCCTTAAGACAAGAAAG+GGG | 0.649496 | 7.2:+7114581 | MS.gene23045:CDS |
| TACACTGCTAATATGTCTCA+GGG | 0.650132 | 7.2:+7113108 | MS.gene23045:CDS |
| GGGTGTAGGACAAATAGAGA+AGG | 0.651657 | 7.2:+7114441 | MS.gene23045:CDS |
| CTAACTTAACTGCTTCAACA+AGG | 0.670044 | 7.2:+7114359 | MS.gene23045:CDS |
| AGAAGGCCAACACCAAAATG+TGG | 0.670587 | 7.2:+7114399 | MS.gene23045:CDS |
| TGATTTGTCTGTATCAATGG+GGG | 0.682465 | 7.2:+7113043 | MS.gene23045:CDS |
| ATGATTTGTCTGTATCAATG+GGG | 0.692803 | 7.2:+7113042 | MS.gene23045:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGTTATACTAATAA+TGG | + | chr7.2:7113483-7113502 | MS.gene23045:intron | 10.0% |
| !!! | ATTATTAGTATAACTTTTTT+TGG | - | chr7.2:7113484-7113503 | None:intergenic | 10.0% |
| !! | ATAAAGGAAAAATAAGAATT+TGG | + | chr7.2:7114022-7114041 | MS.gene23045:intron | 15.0% |
| !! | ATTACTAACAAACAAAATTT+CGG | - | chr7.2:7114106-7114125 | None:intergenic | 15.0% |
| !! | TAAGAATCTTCAAAAAATTT+GGG | + | chr7.2:7114627-7114646 | MS.gene23045:CDS | 15.0% |
| !! | TATTTGGTTAAAATAAGTTT+AGG | - | chr7.2:7113460-7113479 | None:intergenic | 15.0% |
| !! | TTTAGAAAAGAAAAGTTATT+TGG | + | chr7.2:7114708-7114727 | MS.gene23045:CDS | 15.0% |
| !!! | TATAACTTTTTTTGGTTATT+TGG | - | chr7.2:7113476-7113495 | None:intergenic | 15.0% |
| !! | AATACAATAATGAGCAAAAA+TGG | - | chr7.2:7113678-7113697 | None:intergenic | 20.0% |
| !! | ACATTAGAAGTTTAAAAAGT+CGG | - | chr7.2:7113798-7113817 | None:intergenic | 20.0% |
| !! | CAAGTCAAATTGAAATTAAA+TGG | - | chr7.2:7114664-7114683 | None:intergenic | 20.0% |
| !! | GTAAGAATCTTCAAAAAATT+TGG | + | chr7.2:7114626-7114645 | MS.gene23045:CDS | 20.0% |
| !! | TTCTAACTCTTTCTAATATT+GGG | - | chr7.2:7113549-7113568 | None:intergenic | 20.0% |
| !! | TTTCTAACTCTTTCTAATAT+TGG | - | chr7.2:7113550-7113569 | None:intergenic | 20.0% |
| !!! | CATTTAATTTCAATTTGACT+TGG | + | chr7.2:7114662-7114681 | MS.gene23045:CDS | 20.0% |
| !!! | CTAAGTTATTTTAGATTAGT+CGG | + | chr7.2:7113255-7113274 | MS.gene23045:intron | 20.0% |
| !!! | TCTAATGTGATTTTTTTGTT+GGG | + | chr7.2:7113810-7113829 | MS.gene23045:intron | 20.0% |
| !!! | TTCTAATGTGATTTTTTTGT+TGG | + | chr7.2:7113809-7113828 | MS.gene23045:intron | 20.0% |
| ! | AAGTTATTTGGAGAAATTGA+AGG | + | chr7.2:7114720-7114739 | MS.gene23045:CDS | 25.0% |
| ! | AATGCAAGTAAGGATTATTT+GGG | + | chr7.2:7114208-7114227 | MS.gene23045:CDS | 25.0% |
| ! | TATTTCCTTAAGACAAGAAA+GGG | + | chr7.2:7114580-7114599 | MS.gene23045:CDS | 25.0% |
| ! | TGTTAGTAATTTCATAGAGT+TGG | + | chr7.2:7114116-7114135 | MS.gene23045:intron | 25.0% |
| ! | TTATTTCCTTAAGACAAGAA+AGG | + | chr7.2:7114579-7114598 | MS.gene23045:CDS | 25.0% |
| ! | TTCATTCAAATATCATACCA+TGG | - | chr7.2:7112949-7112968 | None:intergenic | 25.0% |
| ! | TTGAATATTAGAGTACAACT+AGG | + | chr7.2:7113232-7113251 | MS.gene23045:intron | 25.0% |
| !!! | CTTTTTATTTTTCAGTCTCA+AGG | + | chr7.2:7113946-7113965 | MS.gene23045:intron | 25.0% |
| ACAATAGTTTCGTATCATGA+TGG | - | chr7.2:7112992-7113011 | None:intergenic | 30.0% | |
| ATTTCCTTAAGACAAGAAAG+GGG | + | chr7.2:7114581-7114600 | MS.gene23045:CDS | 30.0% | |
| CAATGCAAGTAAGGATTATT+TGG | + | chr7.2:7114207-7114226 | MS.gene23045:CDS | 30.0% | |
| GAATCTTCAAAAAATTTGGG+AGG | + | chr7.2:7114630-7114649 | MS.gene23045:CDS | 30.0% | |
| GTATTTGTTCTATGTTGCAA+AGG | - | chr7.2:7113905-7113924 | None:intergenic | 30.0% | |
| TAAACAAACAGCAAAAGAGA+CGG | - | chr7.2:7114069-7114088 | None:intergenic | 30.0% | |
| TATTACTCACAGTAAGATTG+CGG | + | chr7.2:7113300-7113319 | MS.gene23045:intron | 30.0% | |
| TGTATTGTGTGTGAAATTTG+TGG | + | chr7.2:7113692-7113711 | MS.gene23045:intron | 30.0% | |
| TTATTTGGAGAAATTGAAGG+AGG | + | chr7.2:7114723-7114742 | MS.gene23045:CDS | 30.0% | |
| TTGAACTCAAAGTTAGATTC+TGG | - | chr7.2:7114190-7114209 | None:intergenic | 30.0% | |
| ! | AAAAAGTCGGAATTTAGAGT+TGG | - | chr7.2:7113785-7113804 | None:intergenic | 30.0% |
| ! | AGTAAGGATTATTTGGGTTT+CGG | + | chr7.2:7114214-7114233 | MS.gene23045:CDS | 30.0% |
| ! | AGTTAGATTCTGGAAAATTC+AGG | - | chr7.2:7114180-7114199 | None:intergenic | 30.0% |
| ! | ATGATTTGTCTGTATCAATG+GGG | + | chr7.2:7113042-7113061 | MS.gene23045:CDS | 30.0% |
| ! | GATGATTTGTCTGTATCAAT+GGG | + | chr7.2:7113041-7113060 | MS.gene23045:CDS | 30.0% |
| ! | TTCCTCTAGTAATGGAATAA+AGG | - | chr7.2:7114467-7114486 | None:intergenic | 30.0% |
| ! | TTGTAGATCACTGATTAAAG+AGG | - | chr7.2:7113378-7113397 | None:intergenic | 30.0% |
| !! | AGATTTTGAAGAGATGGATT+TGG | + | chr7.2:7114861-7114880 | MS.gene23045:CDS | 30.0% |
| !! | TCAAGAAGTGTCAATTTAGT+TGG | - | chr7.2:7114155-7114174 | None:intergenic | 30.0% |
| !!! | TTGTGTTTTGACTTTGCTTT+AGG | + | chr7.2:7113019-7113038 | MS.gene23045:intron | 30.0% |
| AGAAAAAAACTCGCAGGTTT+AGG | + | chr7.2:7114524-7114543 | MS.gene23045:CDS | 35.0% | |
| AGGTCAAAAAACAAGACTCA+GGG | - | chr7.2:7113424-7113443 | None:intergenic | 35.0% | |
| ATTACTCACAGTAAGATTGC+GGG | + | chr7.2:7113301-7113320 | MS.gene23045:intron | 35.0% | |
| ATTGGAAAGGCTAATGGTAA+AGG | + | chr7.2:7114786-7114805 | MS.gene23045:CDS | 35.0% | |
| CCTGACACAAAATAAGTGAA+GGG | - | chr7.2:7114504-7114523 | None:intergenic | 35.0% | |
| CTAACTTAACTGCTTCAACA+AGG | + | chr7.2:7114359-7114378 | MS.gene23045:CDS | 35.0% | |
| GAAAAAAACTCGCAGGTTTA+GGG | + | chr7.2:7114525-7114544 | MS.gene23045:CDS | 35.0% | |
| GAACATACTTCCTCTAGTAA+TGG | - | chr7.2:7114475-7114494 | None:intergenic | 35.0% | |
| GAACTTCTCTCACTTGAATA+AGG | + | chr7.2:7112882-7112901 | MS.gene23045:CDS | 35.0% | |
| GGAAAAACTAAGGGATAATG+TGG | + | chr7.2:7114747-7114766 | MS.gene23045:CDS | 35.0% | |
| TACACTGCTAATATGTCTCA+GGG | + | chr7.2:7113108-7113127 | MS.gene23045:CDS | 35.0% | |
| TAGGTCAAAAAACAAGACTC+AGG | - | chr7.2:7113425-7113444 | None:intergenic | 35.0% | |
| TCCTGACACAAAATAAGTGA+AGG | - | chr7.2:7114505-7114524 | None:intergenic | 35.0% | |
| TCTCTCACTTGAATAAGGTT+AGG | + | chr7.2:7112887-7112906 | MS.gene23045:CDS | 35.0% | |
| TGAAAGAGGGTTTATTGTGA+AGG | + | chr7.2:7114267-7114286 | MS.gene23045:CDS | 35.0% | |
| TGCGCTCAACAAAATCATAA+AGG | + | chr7.2:7114006-7114025 | MS.gene23045:intron | 35.0% | |
| TTCACAATAAACCCTCTTTC+AGG | - | chr7.2:7114268-7114287 | None:intergenic | 35.0% | |
| ! | ATTTTGTTGAGCGCAAAACA+TGG | - | chr7.2:7114001-7114020 | None:intergenic | 35.0% |
| ! | CTTTGAGTTCAATGCAAGTA+AGG | + | chr7.2:7114198-7114217 | MS.gene23045:CDS | 35.0% |
| ! | GGATGATTTGTCTGTATCAA+TGG | + | chr7.2:7113040-7113059 | MS.gene23045:intron | 35.0% |
| ! | TCTAAAGCAGATTGAACACA+AGG | - | chr7.2:7114694-7114713 | None:intergenic | 35.0% |
| ! | TGATTTGTCTGTATCAATGG+GGG | + | chr7.2:7113043-7113062 | MS.gene23045:CDS | 35.0% |
| !! | GGAAGAAGATTTTGAAGAGA+TGG | + | chr7.2:7114855-7114874 | MS.gene23045:CDS | 35.0% |
| !! | TAACTATACCTCTGAAGCAT+GGG | + | chr7.2:7113617-7113636 | MS.gene23045:intron | 35.0% |
| !! | TTAACTATACCTCTGAAGCA+TGG | + | chr7.2:7113616-7113635 | MS.gene23045:intron | 35.0% |
| AAACAGCAAAAGAGACGGAT+TGG | - | chr7.2:7114064-7114083 | None:intergenic | 40.0% | |
| ACCAGCAAGACACTTACAAA+AGG | + | chr7.2:7113180-7113199 | MS.gene23045:CDS | 40.0% | |
| AGCTTCTTGATCCTGAAAGA+GGG | + | chr7.2:7114254-7114273 | MS.gene23045:CDS | 40.0% | |
| ATGGATTTGGATGCTGAACT+AGG | + | chr7.2:7114874-7114893 | MS.gene23045:CDS | 40.0% | |
| GAAACAAGAGACAGTGAACT+AGG | - | chr7.2:7113575-7113594 | None:intergenic | 40.0% | |
| GACTCAAACCCACGAAATTA+GGG | - | chr7.2:7113334-7113353 | None:intergenic | 40.0% | |
| GGCCTTTATTCCATTACTAG+AGG | + | chr7.2:7114462-7114481 | MS.gene23045:CDS | 40.0% | |
| GGTCTTCTTCATCATGACAA+CGG | - | chr7.2:7113357-7113376 | None:intergenic | 40.0% | |
| GTACACTGCTAATATGTCTC+AGG | + | chr7.2:7113107-7113126 | MS.gene23045:CDS | 40.0% | |
| GTCGAGACTTTGGATTTCAA+GGG | + | chr7.2:7114421-7114440 | MS.gene23045:CDS | 40.0% | |
| GTCTTCTTCATCATGACAAC+GGG | - | chr7.2:7113356-7113375 | None:intergenic | 40.0% | |
| GTGAAGGATGCTTGTATTGT+TGG | + | chr7.2:7114283-7114302 | MS.gene23045:CDS | 40.0% | |
| GTTCAAGTCCCTAATTTCGT+GGG | + | chr7.2:7113323-7113342 | MS.gene23045:intron | 40.0% | |
| GTTGAAGCAGTTAAGTTAGC+TGG | - | chr7.2:7114358-7114377 | None:intergenic | 40.0% | |
| GTTGGAATTGGAAAGGCTAA+TGG | + | chr7.2:7114780-7114799 | MS.gene23045:CDS | 40.0% | |
| TTTGGAGAAATTGAAGGAGG+CGG | + | chr7.2:7114726-7114745 | MS.gene23045:CDS | 40.0% | |
| ! | ACCTTTTGTAAGTGTCTTGC+TGG | - | chr7.2:7113184-7113203 | None:intergenic | 40.0% |
| ! | ACTTTGGATTTCAAGGGTGT+AGG | + | chr7.2:7114427-7114446 | MS.gene23045:CDS | 40.0% |
| ! | GTTCTATGTTGCAAAGGTAC+AGG | - | chr7.2:7113899-7113918 | None:intergenic | 40.0% |
| ! | GTTTAGGTTCAGAGTTCACT+AGG | - | chr7.2:7113444-7113463 | None:intergenic | 40.0% |
| !! | CTCTAGAGTTGGAATTGGAA+AGG | + | chr7.2:7114773-7114792 | MS.gene23045:CDS | 40.0% |
| !! | TAATGTGGTAGCTCTAGAGT+TGG | + | chr7.2:7114762-7114781 | MS.gene23045:CDS | 40.0% |
| !! | TGTTGGCCTTCTTCTATTTC+TGG | - | chr7.2:7114391-7114410 | None:intergenic | 40.0% |
| !!! | CCCTTCACTTATTTTGTGTC+AGG | + | chr7.2:7114501-7114520 | MS.gene23045:CDS | 40.0% |
| AAACTCGCAGGTTTAGGGAA+TGG | + | chr7.2:7114530-7114549 | MS.gene23045:CDS | 45.0% | |
| AACTCGCAGGTTTAGGGAAT+GGG | + | chr7.2:7114531-7114550 | MS.gene23045:CDS | 45.0% | |
| AGAAGGCCAACACCAAAATG+TGG | + | chr7.2:7114399-7114418 | MS.gene23045:CDS | 45.0% | |
| CCAAAATGTGGTCGAGACTT+TGG | + | chr7.2:7114411-7114430 | MS.gene23045:CDS | 45.0% | |
| CCAGAGCCAGAAATAGAAGA+AGG | + | chr7.2:7114382-7114401 | MS.gene23045:CDS | 45.0% | |
| CTCTCCCCTTTCTTGTCTTA+AGG | - | chr7.2:7114588-7114607 | None:intergenic | 45.0% | |
| CTGCTAATATGTCTCAGGGA+TGG | + | chr7.2:7113112-7113131 | MS.gene23045:CDS | 45.0% | |
| GAAGGAGGCGGAAAAACTAA+GGG | + | chr7.2:7114738-7114757 | MS.gene23045:CDS | 45.0% | |
| GAGCTTCTTGATCCTGAAAG+AGG | + | chr7.2:7114253-7114272 | MS.gene23045:CDS | 45.0% | |
| GGACTCAAACCCACGAAATT+AGG | - | chr7.2:7113335-7113354 | None:intergenic | 45.0% | |
| GGGTGTAGGACAAATAGAGA+AGG | + | chr7.2:7114441-7114460 | MS.gene23045:CDS | 45.0% | |
| GGTCGAGACTTTGGATTTCA+AGG | + | chr7.2:7114420-7114439 | MS.gene23045:CDS | 45.0% | |
| GGTTCAAGTCCCTAATTTCG+TGG | + | chr7.2:7113322-7113341 | MS.gene23045:intron | 45.0% | |
| GTCAGGAGAAAAAAACTCGC+AGG | + | chr7.2:7114518-7114537 | MS.gene23045:CDS | 45.0% | |
| TACTCTGAGCCTTTCATCCT+TGG | + | chr7.2:7112916-7112935 | MS.gene23045:CDS | 45.0% | |
| TGAAGGAGGCGGAAAAACTA+AGG | + | chr7.2:7114737-7114756 | MS.gene23045:CDS | 45.0% | |
| TGATGCAGCAAGAGACTTGT+TGG | + | chr7.2:7114831-7114850 | MS.gene23045:CDS | 45.0% | |
| ! | CCAAAGTCTCGACCACATTT+TGG | - | chr7.2:7114414-7114433 | None:intergenic | 45.0% |
| !! | CCTTCTTCTATTTCTGGCTC+TGG | - | chr7.2:7114385-7114404 | None:intergenic | 45.0% |
| !! | GGTAGCTCTAGAGTTGGAAT+TGG | + | chr7.2:7114768-7114787 | MS.gene23045:CDS | 45.0% |
| !! | TCTCGACCACATTTTGGTGT+TGG | - | chr7.2:7114408-7114427 | None:intergenic | 45.0% |
| CGAGCGATGAGAAGTTCACA+TGG | + | chr7.2:7112851-7112870 | MS.gene23045:CDS | 50.0% | |
| GAATGGGCATTCACTGCTCT+GGG | + | chr7.2:7114547-7114566 | MS.gene23045:CDS | 50.0% | |
| GTGTGTAACCCATGCTTCAG+AGG | - | chr7.2:7113628-7113647 | None:intergenic | 50.0% | |
| GTTACACACGTGTACGCGTA+CGG | + | chr7.2:7113639-7113658 | MS.gene23045:intron | 50.0% | |
| TCTGAGCCTTTCATCCTTGG+CGG | + | chr7.2:7112919-7112938 | MS.gene23045:CDS | 50.0% | |
| TGTCTGTATCAATGGGGGAC+AGG | + | chr7.2:7113048-7113067 | MS.gene23045:CDS | 50.0% | |
| !! | TGCAGCAAGAGACTTGTTGG+AGG | + | chr7.2:7114834-7114853 | MS.gene23045:CDS | 50.0% |
| CATACCATGGATAGCCGCCA+AGG | - | chr7.2:7112936-7112955 | None:intergenic | 55.0% | |
| GGAATGGGCATTCACTGCTC+TGG | + | chr7.2:7114546-7114565 | MS.gene23045:CDS | 55.0% | |
| GGATAGCCGCCAAGGATGAA+AGG | - | chr7.2:7112928-7112947 | None:intergenic | 55.0% | |
| GTGTACGCGTACGGTACTTG+TGG | + | chr7.2:7113648-7113667 | MS.gene23045:intron | 55.0% | |
| TCATCCTTGGCGGCTATCCA+TGG | + | chr7.2:7112929-7112948 | MS.gene23045:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 7112835 | 7114912 | 7112835 | ID=MS.gene23045 |
| chr7.2 | mRNA | 7112835 | 7114912 | 7112835 | ID=MS.gene23045.t1;Parent=MS.gene23045 |
| chr7.2 | exon | 7112835 | 7112950 | 7112835 | ID=MS.gene23045.t1.exon1;Parent=MS.gene23045.t1 |
| chr7.2 | CDS | 7112835 | 7112950 | 7112835 | ID=cds.MS.gene23045.t1;Parent=MS.gene23045.t1 |
| chr7.2 | exon | 7113041 | 7113201 | 7113041 | ID=MS.gene23045.t1.exon2;Parent=MS.gene23045.t1 |
| chr7.2 | CDS | 7113041 | 7113201 | 7113041 | ID=cds.MS.gene23045.t1;Parent=MS.gene23045.t1 |
| chr7.2 | exon | 7114191 | 7114912 | 7114191 | ID=MS.gene23045.t1.exon3;Parent=MS.gene23045.t1 |
| chr7.2 | CDS | 7114191 | 7114912 | 7114191 | ID=cds.MS.gene23045.t1;Parent=MS.gene23045.t1 |
| Gene Sequence |
| Protein sequence |
