Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70534.t1 | GAU47270.1 | 78.6 | 103 | 22 | 0 | 1 | 103 | 150 | 252 | 5.60E-35 | 157.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70534.t1 | A0A2Z6PBJ3 | 78.6 | 103 | 22 | 0 | 1 | 103 | 150 | 252 | 4.1e-35 | 157.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene70534 | 0.837 | 6.73E-57 | -1.69E-46 |
| MS.gene049254 | MS.gene70534 | 0.832576 | 8.74E-56 | -1.69E-46 |
| MS.gene049404 | MS.gene70534 | 0.819899 | 9.11E-53 | -1.69E-46 |
| MS.gene049435 | MS.gene70534 | 0.825696 | 4.07E-54 | -1.69E-46 |
| MS.gene049452 | MS.gene70534 | 0.827103 | 1.88E-54 | -1.69E-46 |
| MS.gene049669 | MS.gene70534 | 0.811926 | 5.48E-51 | -1.69E-46 |
| MS.gene050026 | MS.gene70534 | 0.846535 | 2.04E-59 | -1.69E-46 |
| MS.gene050156 | MS.gene70534 | 0.809999 | 1.43E-50 | -1.69E-46 |
| MS.gene050355 | MS.gene70534 | 0.816207 | 6.23E-52 | -1.69E-46 |
| MS.gene050442 | MS.gene70534 | 0.835275 | 1.85E-56 | -1.69E-46 |
| MS.gene050559 | MS.gene70534 | 0.827819 | 1.27E-54 | -1.69E-46 |
| MS.gene050561 | MS.gene70534 | 0.833744 | 4.47E-56 | -1.69E-46 |
| MS.gene050562 | MS.gene70534 | 0.822279 | 2.58E-53 | -1.69E-46 |
| MS.gene050605 | MS.gene70534 | 0.819665 | 1.03E-52 | -1.69E-46 |
| MS.gene050680 | MS.gene70534 | 0.845755 | 3.33E-59 | -1.69E-46 |
| MS.gene050750 | MS.gene70534 | 0.830023 | 3.71E-55 | -1.69E-46 |
| MS.gene050844 | MS.gene70534 | 0.829361 | 5.37E-55 | -1.69E-46 |
| MS.gene050953 | MS.gene70534 | 0.83303 | 6.74E-56 | -1.69E-46 |
| MS.gene051181 | MS.gene70534 | 0.838087 | 3.54E-57 | -1.69E-46 |
| MS.gene051198 | MS.gene70534 | 0.817051 | 4.03E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene70534 | 0.806114 | 9.63E-50 | -1.69E-46 |
| MS.gene051265 | MS.gene70534 | 0.813765 | 2.17E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene70534 | 0.812694 | 3.73E-51 | -1.69E-46 |
| MS.gene051332 | MS.gene70534 | 0.806272 | 8.92E-50 | -1.69E-46 |
| MS.gene051368 | MS.gene70534 | 0.827548 | 1.47E-54 | -1.69E-46 |
| MS.gene051574 | MS.gene70534 | 0.804424 | 2.18E-49 | -1.69E-46 |
| MS.gene051594 | MS.gene70534 | 0.830747 | 2.47E-55 | -1.69E-46 |
| MS.gene051719 | MS.gene70534 | 0.806176 | 9.34E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene70534 | 0.816668 | 4.91E-52 | -1.69E-46 |
| MS.gene051800 | MS.gene70534 | 0.809254 | 2.07E-50 | -1.69E-46 |
| MS.gene051924 | MS.gene70534 | -0.807079 | 6.02E-50 | -1.69E-46 |
| MS.gene052037 | MS.gene70534 | 0.801661 | 8.10E-49 | -1.69E-46 |
| MS.gene052190 | MS.gene70534 | 0.817332 | 3.48E-52 | -1.69E-46 |
| MS.gene052208 | MS.gene70534 | 0.808917 | 2.45E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene70534 | 0.846206 | 2.51E-59 | -1.69E-46 |
| MS.gene052426 | MS.gene70534 | 0.805236 | 1.47E-49 | -1.69E-46 |
| MS.gene052488 | MS.gene70534 | 0.800669 | 1.29E-48 | -1.69E-46 |
| MS.gene052519 | MS.gene70534 | 0.853755 | 1.94E-61 | -1.69E-46 |
| MS.gene052582 | MS.gene70534 | 0.822545 | 2.24E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene70534 | 0.81751 | 3.18E-52 | -1.69E-46 |
| MS.gene052677 | MS.gene70534 | 0.800264 | 1.56E-48 | -1.69E-46 |
| MS.gene052773 | MS.gene70534 | 0.803212 | 3.88E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene70534 | 0.834878 | 2.32E-56 | -1.69E-46 |
| MS.gene052867 | MS.gene70534 | 0.827892 | 1.22E-54 | -1.69E-46 |
| MS.gene05289 | MS.gene70534 | 0.800733 | 1.26E-48 | -1.69E-46 |
| MS.gene053145 | MS.gene70534 | 0.812446 | 4.22E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene70534 | 0.855181 | 7.50E-62 | -1.69E-46 |
| MS.gene053201 | MS.gene70534 | 0.819715 | 1.00E-52 | -1.69E-46 |
| MS.gene053202 | MS.gene70534 | 0.802808 | 4.71E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene70534 | 0.831359 | 1.75E-55 | -1.69E-46 |
| MS.gene053584 | MS.gene70534 | 0.808088 | 3.68E-50 | -1.69E-46 |
| MS.gene053998 | MS.gene70534 | 0.845055 | 5.16E-59 | -1.69E-46 |
| MS.gene05414 | MS.gene70534 | 0.817862 | 2.65E-52 | -1.69E-46 |
| MS.gene05415 | MS.gene70534 | 0.851582 | 8.08E-61 | -1.69E-46 |
| MS.gene054236 | MS.gene70534 | 0.843393 | 1.44E-58 | -1.69E-46 |
| MS.gene05423 | MS.gene70534 | 0.813416 | 2.59E-51 | -1.69E-46 |
| MS.gene054291 | MS.gene70534 | -0.829013 | 6.53E-55 | -1.69E-46 |
| MS.gene054405 | MS.gene70534 | 0.833381 | 5.51E-56 | -1.69E-46 |
| MS.gene054467 | MS.gene70534 | 0.813879 | 2.05E-51 | -1.69E-46 |
| MS.gene054468 | MS.gene70534 | 0.807988 | 3.86E-50 | -1.69E-46 |
| MS.gene054559 | MS.gene70534 | 0.849012 | 4.25E-60 | -1.69E-46 |
| MS.gene054651 | MS.gene70534 | 0.845577 | 3.72E-59 | -1.69E-46 |
| MS.gene054775 | MS.gene70534 | 0.825544 | 4.42E-54 | -1.69E-46 |
| MS.gene054801 | MS.gene70534 | 0.822654 | 2.11E-53 | -1.69E-46 |
| MS.gene05510 | MS.gene70534 | 0.809508 | 1.83E-50 | -1.69E-46 |
| MS.gene055166 | MS.gene70534 | 0.810318 | 1.22E-50 | -1.69E-46 |
| MS.gene055227 | MS.gene70534 | 0.843043 | 1.79E-58 | -1.69E-46 |
| MS.gene055228 | MS.gene70534 | 0.844012 | 9.84E-59 | -1.69E-46 |
| MS.gene055356 | MS.gene70534 | 0.8146 | 1.42E-51 | -1.69E-46 |
| MS.gene055357 | MS.gene70534 | 0.838537 | 2.71E-57 | -1.69E-46 |
| MS.gene055586 | MS.gene70534 | 0.807973 | 3.89E-50 | -1.69E-46 |
| MS.gene055589 | MS.gene70534 | 0.800261 | 1.57E-48 | -1.69E-46 |
| MS.gene055701 | MS.gene70534 | 0.822615 | 2.16E-53 | -1.69E-46 |
| MS.gene055818 | MS.gene70534 | 0.85939 | 4.27E-63 | -1.69E-46 |
| MS.gene055926 | MS.gene70534 | 0.833598 | 4.86E-56 | -1.69E-46 |
| MS.gene05604 | MS.gene70534 | 0.828553 | 8.43E-55 | -1.69E-46 |
| MS.gene056050 | MS.gene70534 | 0.83338 | 5.51E-56 | -1.69E-46 |
| MS.gene056162 | MS.gene70534 | 0.816694 | 4.85E-52 | -1.69E-46 |
| MS.gene056173 | MS.gene70534 | 0.819941 | 8.91E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene70534 | 0.824518 | 7.73E-54 | -1.69E-46 |
| MS.gene056252 | MS.gene70534 | 0.858344 | 8.79E-63 | -1.69E-46 |
| MS.gene056366 | MS.gene70534 | 0.833659 | 4.70E-56 | -1.69E-46 |
| MS.gene056498 | MS.gene70534 | 0.804822 | 1.80E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene70534 | 0.830079 | 3.59E-55 | -1.69E-46 |
| MS.gene056595 | MS.gene70534 | 0.805285 | 1.44E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene70534 | 0.80279 | 4.75E-49 | -1.69E-46 |
| MS.gene057021 | MS.gene70534 | 0.810651 | 1.04E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene70534 | 0.818753 | 1.66E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene70534 | 0.83442 | 3.03E-56 | -1.69E-46 |
| MS.gene057200 | MS.gene70534 | 0.80294 | 4.42E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene70534 | 0.832503 | 9.11E-56 | -1.69E-46 |
| MS.gene057314 | MS.gene70534 | 0.806456 | 8.15E-50 | -1.69E-46 |
| MS.gene057414 | MS.gene70534 | 0.816687 | 4.86E-52 | -1.69E-46 |
| MS.gene057444 | MS.gene70534 | 0.84245 | 2.57E-58 | -1.69E-46 |
| MS.gene057598 | MS.gene70534 | 0.804617 | 1.98E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene70534 | 0.807999 | 3.84E-50 | -1.69E-46 |
| MS.gene057855 | MS.gene70534 | 0.834881 | 2.32E-56 | -1.69E-46 |
| MS.gene057869 | MS.gene70534 | 0.823857 | 1.11E-53 | -1.69E-46 |
| MS.gene058009 | MS.gene70534 | 0.8128 | 3.53E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene70534 | 0.834056 | 3.74E-56 | -1.69E-46 |
| MS.gene058037 | MS.gene70534 | 0.812296 | 4.55E-51 | -1.69E-46 |
| MS.gene058294 | MS.gene70534 | 0.822088 | 2.86E-53 | -1.69E-46 |
| MS.gene058515 | MS.gene70534 | 0.814932 | 1.20E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene70534 | 0.827601 | 1.43E-54 | -1.69E-46 |
| MS.gene05868 | MS.gene70534 | 0.808452 | 3.08E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene70534 | 0.807766 | 4.31E-50 | -1.69E-46 |
| MS.gene058829 | MS.gene70534 | 0.806303 | 8.78E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene70534 | 0.871476 | 6.64E-67 | -1.69E-46 |
| MS.gene059128 | MS.gene70534 | 0.814754 | 1.31E-51 | -1.69E-46 |
| MS.gene059161 | MS.gene70534 | 0.803693 | 3.09E-49 | -1.69E-46 |
| MS.gene059272 | MS.gene70534 | 0.816972 | 4.20E-52 | -1.69E-46 |
| MS.gene059382 | MS.gene70534 | 0.822959 | 1.79E-53 | -1.69E-46 |
| MS.gene059584 | MS.gene70534 | 0.844087 | 9.40E-59 | -1.69E-46 |
| MS.gene059625 | MS.gene70534 | 0.813495 | 2.49E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene70534 | 0.813112 | 3.02E-51 | -1.69E-46 |
| MS.gene060011 | MS.gene70534 | 0.856461 | 3.17E-62 | -1.69E-46 |
| MS.gene060137 | MS.gene70534 | -0.802693 | 4.97E-49 | -1.69E-46 |
| MS.gene060167 | MS.gene70534 | 0.811865 | 5.65E-51 | -1.69E-46 |
| MS.gene060310 | MS.gene70534 | 0.811529 | 6.69E-51 | -1.69E-46 |
| MS.gene060312 | MS.gene70534 | 0.808412 | 3.14E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene70534 | 0.854521 | 1.16E-61 | -1.69E-46 |
| MS.gene060521 | MS.gene70534 | 0.816069 | 6.69E-52 | -1.69E-46 |
| MS.gene06052 | MS.gene70534 | 0.807577 | 4.72E-50 | -1.69E-46 |
| MS.gene060685 | MS.gene70534 | 0.805669 | 1.19E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene70534 | 0.811011 | 8.66E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70534.t1 | MTR_1g021965 | 61.538 | 52 | 20 | 0 | 18 | 69 | 112 | 163 | 2.90e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCCAACGACGGAAATTA+TGG | 0.246928 | 3.1:-67479388 | MS.gene70534:CDS |
| TTCCACAATCTAAGGAATTA+TGG | 0.275297 | 3.1:+67479229 | None:intergenic |
| TTCTCTCGACTCCAAAGCTT+TGG | 0.344968 | 3.1:+67480288 | None:intergenic |
| CACCTGCCTTCCACAATCTA+AGG | 0.356067 | 3.1:+67479221 | None:intergenic |
| GTTGTTTGCGTGTATTGTTT+TGG | 0.356104 | 3.1:+67480257 | None:intergenic |
| TGCTCTCGAGTGCAAAGCTT+TGG | 0.369375 | 3.1:-67479894 | MS.gene70534:CDS |
| AGCTGCACGAGCCAAAGCTT+TGG | 0.379774 | 3.1:-67480299 | MS.gene70534:CDS |
| GCGGAGAACATCATACTTCC+AGG | 0.389492 | 3.1:-67480469 | MS.gene70534:CDS |
| ACTTCAATTCTGGAAACGTC+TGG | 0.392283 | 3.1:-67479356 | MS.gene70534:CDS |
| TCTCCGCCTTCAATTCTTCA+AGG | 0.400192 | 3.1:+67480485 | None:intergenic |
| CGTGTTTGTCGCTGATGCCT+TGG | 0.446247 | 3.1:-67480446 | MS.gene70534:CDS |
| CCTTCAATTCTTCAAGGAGT+TGG | 0.448637 | 3.1:+67480491 | None:intergenic |
| CCAACTCCTTGAAGAATTGA+AGG | 0.465521 | 3.1:-67480491 | MS.gene70534:CDS |
| TTCCTTAGATTGTGGAAGGC+AGG | 0.477616 | 3.1:-67479223 | MS.gene70534:CDS |
| TTGTAATCATTCCATGAGTC+GGG | 0.479069 | 3.1:+67480412 | None:intergenic |
| TGTCTCTTAATGATCTCATC+AGG | 0.486426 | 3.1:+67479729 | None:intergenic |
| AAGGCCATAATTTCCGTCGT+TGG | 0.491561 | 3.1:+67479384 | None:intergenic |
| TTGAAAAGTTGCCCGACTCA+TGG | 0.500599 | 3.1:-67480423 | MS.gene70534:CDS |
| AGCTCCGCATTCCATTCTGC+TGG | 0.500843 | 3.1:-67479771 | MS.gene70534:CDS |
| AGCTCCGCATTCCATTCTGC+TGG | 0.500843 | 3.1:-67479864 | MS.gene70534:CDS |
| CATTGAAGACACCAGCAGAA+TGG | 0.516038 | 3.1:+67479760 | None:intergenic |
| ACAATCTAAGGAATTATGGC+TGG | 0.522622 | 3.1:+67479233 | None:intergenic |
| AGCCATAATTCCTTAGATTG+TGG | 0.526215 | 3.1:-67479231 | MS.gene70534:CDS |
| CATTGAAGACACCAGCAGAA+TGG | 0.535892 | 3.1:+67479853 | None:intergenic |
| CTTGTAATCATTCCATGAGT+CGG | 0.537899 | 3.1:+67480411 | None:intergenic |
| CTTCAATTCTGGAAACGTCT+GGG | 0.550347 | 3.1:-67479355 | MS.gene70534:CDS |
| TCTGTAATGGCAAATGAAAG+AGG | 0.555816 | 3.1:-67480548 | None:intergenic |
| TACTGATCCTCCTCCGACAG+TGG | 0.555859 | 3.1:+67479313 | None:intergenic |
| GCATCAGCGACAAACACGCC+TGG | 0.558250 | 3.1:+67480451 | None:intergenic |
| ATAATTCCTTAGATTGTGGA+AGG | 0.574451 | 3.1:-67479227 | MS.gene70534:CDS |
| TAGGTGACCACTGTCGGAGG+AGG | 0.579910 | 3.1:-67479320 | MS.gene70534:CDS |
| TTTGCATAGGTGACCACTGT+CGG | 0.584337 | 3.1:-67479326 | MS.gene70534:CDS |
| TGTGGAAGGCAGGTGACTGA+AGG | 0.588000 | 3.1:-67479213 | MS.gene70534:CDS |
| GAGGATCAGTAGCAACAACA+AGG | 0.606584 | 3.1:-67479301 | MS.gene70534:CDS |
| TGACAATAAGAAGAATGTCT+CGG | 0.627026 | 3.1:+67479271 | None:intergenic |
| ATGGCAAATGAAAGAGGACA+AGG | 0.655713 | 3.1:-67480542 | None:intergenic |
| AGATGCGTTCATGCCAACGA+CGG | 0.660184 | 3.1:-67479397 | MS.gene70534:CDS |
| GCATAGGTGACCACTGTCGG+AGG | 0.668853 | 3.1:-67479323 | MS.gene70534:CDS |
| ACAATACACGCAAACAACAG+AGG | 0.686335 | 3.1:-67480252 | MS.gene70534:intron |
| AGGATCAGTAGCAACAACAA+GGG | 0.691715 | 3.1:-67479300 | MS.gene70534:CDS |
| GACACCAGCAGAAAAGAATG+CGG | 0.696693 | 3.1:-67480322 | MS.gene70534:CDS |
| GACACCAGCAGAATGGAATG+CGG | 0.699910 | 3.1:+67479767 | None:intergenic |
| GACACCAGCAGAATGGAATG+CGG | 0.699910 | 3.1:+67479860 | None:intergenic |
| AGGACAAGGAAATCAAAGTG+CGG | 0.706319 | 3.1:-67480528 | MS.gene70534:CDS |
| ACTCCTTGAAGAATTGAAGG+CGG | 0.711654 | 3.1:-67480488 | MS.gene70534:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TATAGATATCGAAAAGTGAA+TGG | + | chr3.1:67479673-67479692 | None:intergenic | 25.0% |
| !! | ACCTAGGTTTGATTTAAAAT+TGG | - | chr3.1:67479733-67479752 | MS.gene70534:CDS | 25.0% |
| !! | CCTAGGTTTGATTTAAAATT+GGG | - | chr3.1:67479734-67479753 | MS.gene70534:CDS | 25.0% |
| !! | CTAGGTTTGATTTAAAATTG+GGG | - | chr3.1:67479735-67479754 | MS.gene70534:CDS | 25.0% |
| AATAAAACTGATCATACCCT+CGG | + | chr3.1:67479770-67479789 | None:intergenic | 30.0% | |
| AATTATTGCTTGTATGAGTC+AGG | - | chr3.1:67480040-67480059 | MS.gene70534:intron | 30.0% | |
| ATAATTCCTTAGATTGTGGA+AGG | - | chr3.1:67480499-67480518 | MS.gene70534:CDS | 30.0% | |
| TACGTTATCTGATTTACGTT+TGG | + | chr3.1:67480266-67480285 | None:intergenic | 30.0% | |
| TGACAATAAGAAGAATGTCT+CGG | + | chr3.1:67480458-67480477 | None:intergenic | 30.0% | |
| TTCCACAATCTAAGGAATTA+TGG | + | chr3.1:67480500-67480519 | None:intergenic | 30.0% | |
| ! | ATAACGTAGAAAGAAGTGTA+TGG | - | chr3.1:67480278-67480297 | MS.gene70534:CDS | 30.0% |
| ! | CCCAATTTTAAATCAAACCT+AGG | + | chr3.1:67479737-67479756 | None:intergenic | 30.0% |
| ! | CTAGGTTCGATTTAAAATTG+AGG | + | chr3.1:67479538-67479557 | None:intergenic | 30.0% |
| ! | TCCAGAATTGAAGTTTTTGA+AGG | + | chr3.1:67480364-67480383 | None:intergenic | 30.0% |
| !! | ACAACATGAAAGTTTGTTGT+TGG | + | chr3.1:67480204-67480223 | None:intergenic | 30.0% |
| AATTTCTTTGGCAACCTTGT+AGG | - | chr3.1:67480228-67480247 | MS.gene70534:intron | 35.0% | |
| ACAAGGTTGCCAAAGAAATT+TGG | + | chr3.1:67480228-67480247 | None:intergenic | 35.0% | |
| ACAATCTAAGGAATTATGGC+TGG | + | chr3.1:67480496-67480515 | None:intergenic | 35.0% | |
| AGCCATAATTCCTTAGATTG+TGG | - | chr3.1:67480495-67480514 | MS.gene70534:CDS | 35.0% | |
| CAAGGTTGCCAAAGAAATTT+GGG | + | chr3.1:67480227-67480246 | None:intergenic | 35.0% | |
| CATGTTGTCCCAAATTTCTT+TGG | - | chr3.1:67480216-67480235 | MS.gene70534:intron | 35.0% | |
| CCTTCAATTCTTAAAGGAGT+TGG | - | chr3.1:67480119-67480138 | MS.gene70534:intron | 35.0% | |
| CTTGTAATCATTCCATGAGT+CGG | + | chr3.1:67479318-67479337 | None:intergenic | 35.0% | |
| GCCTTCAAAAACTTCAATTC+TGG | - | chr3.1:67480360-67480379 | MS.gene70534:CDS | 35.0% | |
| GTTGTTGTGTGTGTAAAGAA+AGG | + | chr3.1:67479712-67479731 | None:intergenic | 35.0% | |
| TCTGTGATGACAAATGAAAG+AGG | + | chr3.1:67480175-67480194 | None:intergenic | 35.0% | |
| TGTCTCTTAATGATCTCATC+AGG | + | chr3.1:67480000-67480019 | None:intergenic | 35.0% | |
| TTGTAATCATTCCATGAGTC+GGG | + | chr3.1:67479317-67479336 | None:intergenic | 35.0% | |
| ! | AATTGAGGTTAGTTACTGTG+AGG | + | chr3.1:67479523-67479542 | None:intergenic | 35.0% |
| ! | ACTCCTTTAAGAATTGAAGG+CGG | + | chr3.1:67480119-67480138 | None:intergenic | 35.0% |
| ! | ATTGAGGTTAGTTACTGTGA+GGG | + | chr3.1:67479522-67479541 | None:intergenic | 35.0% |
| ! | CCAACTCCTTTAAGAATTGA+AGG | + | chr3.1:67480122-67480141 | None:intergenic | 35.0% |
| ! | GTTGTTTGCGTGTATTGTTT+TGG | - | chr3.1:67479801-67479820 | MS.gene70534:intron | 35.0% |
| ! | GTTGTTTGCGTGTATTGTTT+TGG | + | chr3.1:67479820-67479801 | None:intergenic | 35.0% |
| !! | ACCTGAGTCAAATTTGCTTT+TGG | - | chr3.1:67479634-67479653 | MS.gene70534:intron | 35.0% |
| !!! | AAATTTGCTTTTGGCTTAGG+AGG | - | chr3.1:67479643-67479662 | MS.gene70534:intron | 35.0% |
| !!! | GTCAAATTTGCTTTTGGCTT+AGG | - | chr3.1:67479640-67479659 | MS.gene70534:intron | 35.0% |
| AAGCATATCGCTGCAGATAT+TGG | - | chr3.1:67479591-67479610 | MS.gene70534:intron | 40.0% | |
| ACAATACACGCAAACAACAG+AGG | - | chr3.1:67479474-67479493 | MS.gene70534:intron | 40.0% | |
| ACAATACACGCAAACAACAG+AGG | + | chr3.1:67479493-67479474 | None:intergenic | 40.0% | |
| ACTCCTTGAAGAATTGAAGG+CGG | - | chr3.1:67479238-67479257 | MS.gene70534:CDS | 40.0% | |
| AGGACAAGGAAATCAAAGTG+CGG | - | chr3.1:67479198-67479217 | MS.gene70534:CDS | 40.0% | |
| AGGATCAGTAGCAACAACAA+GGG | - | chr3.1:67480426-67480445 | MS.gene70534:CDS | 40.0% | |
| CACACACATAGCAACAATCT+AGG | + | chr3.1:67479556-67479575 | None:intergenic | 40.0% | |
| CCAACTCCTTGAAGAATTGA+AGG | - | chr3.1:67479235-67479254 | MS.gene70534:CDS | 40.0% | |
| CCTTCAATTCTTCAAGGAGT+TGG | + | chr3.1:67479238-67479257 | None:intergenic | 40.0% | |
| CTAGATTGTTGCTATGTGTG+TGG | - | chr3.1:67479554-67479573 | MS.gene70534:intron | 40.0% | |
| GCCAAAAGCAAATTTGACTC+AGG | + | chr3.1:67479638-67479657 | None:intergenic | 40.0% | |
| GGATGTTTACTGTTCCTACA+AGG | + | chr3.1:67480245-67480264 | None:intergenic | 40.0% | |
| TACACACACAACAACAACCT+AGG | - | chr3.1:67479717-67479736 | MS.gene70534:CDS | 40.0% | |
| TCTCCGCCTTCAATTCTTAA+AGG | - | chr3.1:67480113-67480132 | MS.gene70534:intron | 40.0% | |
| TGCTATGTGTGTGGAAAGAA+AGG | - | chr3.1:67479563-67479582 | MS.gene70534:intron | 40.0% | |
| ! | ACTTCAATTCTGGAAACGTC+TGG | - | chr3.1:67480370-67480389 | MS.gene70534:CDS | 40.0% |
| ! | CTTCAATTCTGGAAACGTCT+GGG | - | chr3.1:67480371-67480390 | MS.gene70534:CDS | 40.0% |
| AAGGCCATAATTTCCGTCGT+TGG | + | chr3.1:67480345-67480364 | None:intergenic | 45.0% | |
| CATGCCAACGACGGAAATTA+TGG | - | chr3.1:67480338-67480357 | MS.gene70534:CDS | 45.0% | |
| CATTGAAGACACCAGCAGAA+TGG | + | chr3.1:67479416-67479397 | None:intergenic | 45.0% | |
| GACACCAGCAGAAAAGAATG+CGG | - | chr3.1:67479404-67479423 | MS.gene70534:CDS | 45.0% | |
| GAGGATCAGTAGCAACAACA+AGG | - | chr3.1:67480425-67480444 | MS.gene70534:CDS | 45.0% | |
| TCTCCGCCTTCAATTCTTCA+AGG | + | chr3.1:67479244-67479263 | None:intergenic | 45.0% | |
| TTCCTTAGATTGTGGAAGGC+AGG | - | chr3.1:67480503-67480522 | MS.gene70534:CDS | 45.0% | |
| TTCTCTCGACTCCAAAGCTT+TGG | + | chr3.1:67479441-67479460 | None:intergenic | 45.0% | |
| TTGAAAAGTTGCCCGACTCA+TGG | - | chr3.1:67479303-67479322 | MS.gene70534:CDS | 45.0% | |
| TTTGCATAGGTGACCACTGT+CGG | - | chr3.1:67480400-67480419 | MS.gene70534:CDS | 45.0% | |
| ! | GTCAGGCAACTTTTCAACCA+AGG | - | chr3.1:67480057-67480076 | MS.gene70534:intron | 45.0% |
| ! | GTCTGGGAACTGTTTTGCAT+AGG | - | chr3.1:67480387-67480406 | MS.gene70534:CDS | 45.0% |
| ! | TTGCTCTGAGTGCAAAGCTT+TGG | - | chr3.1:67479925-67479944 | MS.gene70534:intron | 45.0% |
| !! | AATTGGGGTTAGTTACTCCG+AGG | - | chr3.1:67479750-67479769 | MS.gene70534:CDS | 45.0% |
| !! | ATTGGGGTTAGTTACTCCGA+GGG | - | chr3.1:67479751-67479770 | MS.gene70534:CDS | 45.0% |
| !!! | TTGCTTTTGGCTTAGGAGGT+TGG | - | chr3.1:67479647-67479666 | MS.gene70534:intron | 45.0% |
| AGATGCGTTCATGCCAACGA+CGG | - | chr3.1:67480329-67480348 | MS.gene70534:CDS | 50.0% | |
| CACCTGCCTTCCACAATCTA+AGG | + | chr3.1:67480508-67480527 | None:intergenic | 50.0% | |
| CTTCACACTGCTAGACATCC+AGG | + | chr3.1:67480311-67480330 | None:intergenic | 50.0% | |
| CTTTCACACGTGTTTGTCGC+TGG | + | chr3.1:67480085-67480104 | None:intergenic | 50.0% | |
| GAAGTGTATGGCGACAAACC+TGG | - | chr3.1:67480290-67480309 | MS.gene70534:CDS | 50.0% | |
| GACACCAGCAGAATGGAATG+CGG | + | chr3.1:67479869-67479888 | None:intergenic | 50.0% | |
| GCGGAGAACATCATACTTCC+AGG | - | chr3.1:67479257-67479276 | MS.gene70534:CDS | 50.0% | |
| TGCTCTCGAGTGCAAAGCTT+TGG | - | chr3.1:67479832-67479851 | MS.gene70534:intron | 50.0% | |
| ! | AGCTCCGCATTCTTTTCTGC+TGG | + | chr3.1:67479411-67479430 | None:intergenic | 50.0% |
| ! | GTCGGGCAACTTTTCAACCA+AGG | + | chr3.1:67479300-67479319 | None:intergenic | 50.0% |
| AGCTCCGCATTCCATTCTGC+TGG | - | chr3.1:67479862-67479881 | MS.gene70534:CDS | 55.0% | |
| AGCTGCACGAGCCAAAGCTT+TGG | - | chr3.1:67479427-67479446 | MS.gene70534:intron | 55.0% | |
| CGTGTTTGTCGCTGATGCCT+TGG | - | chr3.1:67479280-67479299 | MS.gene70534:CDS | 55.0% | |
| TACTGATCCTCCTCCGACAG+TGG | + | chr3.1:67480416-67480435 | None:intergenic | 55.0% | |
| TGTGGAAGGCAGGTGACTGA+AGG | - | chr3.1:67480513-67480532 | MS.gene70534:CDS | 55.0% | |
| CGTGTTTGTCGCTGGTGCCT+TGG | + | chr3.1:67480077-67480096 | None:intergenic | 60.0% | |
| GCATAGGTGACCACTGTCGG+AGG | - | chr3.1:67480403-67480422 | MS.gene70534:CDS | 60.0% | |
| GCATCAGCGACAAACACGCC+TGG | + | chr3.1:67479278-67479297 | None:intergenic | 60.0% | |
| TAGGTGACCACTGTCGGAGG+AGG | - | chr3.1:67480406-67480425 | MS.gene70534:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 67479191 | 67480557 | 67479191 | ID=MS.gene70534 |
| chr3.1 | mRNA | 67479191 | 67480557 | 67479191 | ID=MS.gene70534.t1;Parent=MS.gene70534 |
| chr3.1 | exon | 67480253 | 67480557 | 67480253 | ID=MS.gene70534.t1.exon1;Parent=MS.gene70534.t1 |
| chr3.1 | CDS | 67480253 | 67480557 | 67480253 | ID=cds.MS.gene70534.t1;Parent=MS.gene70534.t1 |
| chr3.1 | exon | 67479851 | 67479919 | 67479851 | ID=MS.gene70534.t1.exon2;Parent=MS.gene70534.t1 |
| chr3.1 | CDS | 67479851 | 67479919 | 67479851 | ID=cds.MS.gene70534.t1;Parent=MS.gene70534.t1 |
| chr3.1 | exon | 67479698 | 67479791 | 67479698 | ID=MS.gene70534.t1.exon3;Parent=MS.gene70534.t1 |
| chr3.1 | CDS | 67479698 | 67479791 | 67479698 | ID=cds.MS.gene70534.t1;Parent=MS.gene70534.t1 |
| chr3.1 | exon | 67479191 | 67479424 | 67479191 | ID=MS.gene70534.t1.exon4;Parent=MS.gene70534.t1 |
| chr3.1 | CDS | 67479191 | 67479424 | 67479191 | ID=cds.MS.gene70534.t1;Parent=MS.gene70534.t1 |
| Gene Sequence |
| Protein sequence |
