Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065904.t1 | XP_013456641.1 | 78 | 159 | 5 | 1 | 1 | 129 | 1 | 159 | 3.80E-57 | 230.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065904.t1 | Q4QTJ1 | 27.5 | 153 | 80 | 3 | 4 | 125 | 42 | 194 | 1.3e-10 | 67.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065904.t1 | A0A072ULU0 | 78.0 | 159 | 5 | 1 | 1 | 129 | 1 | 159 | 2.7e-57 | 230.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene065904 | 0.81238 | 4.36E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene065904 | 0.868324 | 7.11E-66 | -1.69E-46 |
| MS.gene049343 | MS.gene065904 | 0.813551 | 2.42E-51 | -1.69E-46 |
| MS.gene049404 | MS.gene065904 | 0.858148 | 1.00E-62 | -1.69E-46 |
| MS.gene049452 | MS.gene065904 | 0.814486 | 1.50E-51 | -1.69E-46 |
| MS.gene049821 | MS.gene065904 | 0.801068 | 1.07E-48 | -1.69E-46 |
| MS.gene049850 | MS.gene065904 | 0.802172 | 6.37E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene065904 | 0.803299 | 3.73E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene065904 | 0.826841 | 2.17E-54 | -1.69E-46 |
| MS.gene050073 | MS.gene065904 | 0.805556 | 1.26E-49 | -1.69E-46 |
| MS.gene050156 | MS.gene065904 | 0.822833 | 1.92E-53 | -1.69E-46 |
| MS.gene05016 | MS.gene065904 | 0.801414 | 9.10E-49 | -1.69E-46 |
| MS.gene050201 | MS.gene065904 | 0.800729 | 1.26E-48 | -1.69E-46 |
| MS.gene050237 | MS.gene065904 | 0.810382 | 1.19E-50 | -1.69E-46 |
| MS.gene050273 | MS.gene065904 | 0.815282 | 1.00E-51 | -1.69E-46 |
| MS.gene050355 | MS.gene065904 | 0.801424 | 9.06E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene065904 | 0.827069 | 1.92E-54 | -1.69E-46 |
| MS.gene050559 | MS.gene065904 | 0.858053 | 1.07E-62 | -1.69E-46 |
| MS.gene050561 | MS.gene065904 | 0.861146 | 1.26E-63 | -1.69E-46 |
| MS.gene050562 | MS.gene065904 | 0.843997 | 9.93E-59 | -1.69E-46 |
| MS.gene050605 | MS.gene065904 | 0.801167 | 1.02E-48 | -1.69E-46 |
| MS.gene050680 | MS.gene065904 | 0.801415 | 9.10E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene065904 | 0.838833 | 2.27E-57 | -1.69E-46 |
| MS.gene050780 | MS.gene065904 | 0.821121 | 4.78E-53 | -1.69E-46 |
| MS.gene050826 | MS.gene065904 | 0.810704 | 1.01E-50 | -1.69E-46 |
| MS.gene050953 | MS.gene065904 | 0.840195 | 1.01E-57 | -1.69E-46 |
| MS.gene051181 | MS.gene065904 | 0.83513 | 2.01E-56 | -1.69E-46 |
| MS.gene051198 | MS.gene065904 | 0.819588 | 1.07E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene065904 | 0.810088 | 1.37E-50 | -1.69E-46 |
| MS.gene05125 | MS.gene065904 | 0.8011 | 1.06E-48 | -1.69E-46 |
| MS.gene051279 | MS.gene065904 | 0.835973 | 1.23E-56 | -1.69E-46 |
| MS.gene051332 | MS.gene065904 | 0.831423 | 1.68E-55 | -1.69E-46 |
| MS.gene051594 | MS.gene065904 | 0.814363 | 1.60E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene065904 | 0.859205 | 4.86E-63 | -1.69E-46 |
| MS.gene051957 | MS.gene065904 | 0.806622 | 7.52E-50 | -1.69E-46 |
| MS.gene052108 | MS.gene065904 | 0.823942 | 1.06E-53 | -1.69E-46 |
| MS.gene052208 | MS.gene065904 | 0.834049 | 3.75E-56 | -1.69E-46 |
| MS.gene052239 | MS.gene065904 | -0.819426 | 1.17E-52 | -1.69E-46 |
| MS.gene052333 | MS.gene065904 | 0.817118 | 3.89E-52 | -1.69E-46 |
| MS.gene052447 | MS.gene065904 | 0.822948 | 1.80E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene065904 | 0.848629 | 5.43E-60 | -1.69E-46 |
| MS.gene052582 | MS.gene065904 | 0.832701 | 8.14E-56 | -1.69E-46 |
| MS.gene052584 | MS.gene065904 | 0.832514 | 9.05E-56 | -1.69E-46 |
| MS.gene052773 | MS.gene065904 | 0.822864 | 1.89E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene065904 | 0.825044 | 5.81E-54 | -1.69E-46 |
| MS.gene052867 | MS.gene065904 | 0.828594 | 8.24E-55 | -1.69E-46 |
| MS.gene052954 | MS.gene065904 | 0.809585 | 1.76E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene065904 | 0.843527 | 1.33E-58 | -1.69E-46 |
| MS.gene053082 | MS.gene065904 | 0.802579 | 5.25E-49 | -1.69E-46 |
| MS.gene053154 | MS.gene065904 | 0.826557 | 2.54E-54 | -1.69E-46 |
| MS.gene053166 | MS.gene065904 | 0.8549 | 9.05E-62 | -1.69E-46 |
| MS.gene053201 | MS.gene065904 | 0.837867 | 4.04E-57 | -1.69E-46 |
| MS.gene053202 | MS.gene065904 | 0.805196 | 1.50E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene065904 | 0.830477 | 2.87E-55 | -1.69E-46 |
| MS.gene053883 | MS.gene065904 | 0.800765 | 1.24E-48 | -1.69E-46 |
| MS.gene053966 | MS.gene065904 | 0.806678 | 7.32E-50 | -1.69E-46 |
| MS.gene053974 | MS.gene065904 | 0.803978 | 2.69E-49 | -1.69E-46 |
| MS.gene053998 | MS.gene065904 | 0.835716 | 1.43E-56 | -1.69E-46 |
| MS.gene05410 | MS.gene065904 | 0.810175 | 1.31E-50 | -1.69E-46 |
| MS.gene05414 | MS.gene065904 | 0.825361 | 4.89E-54 | -1.69E-46 |
| MS.gene05415 | MS.gene065904 | 0.886153 | 4.38E-72 | -1.69E-46 |
| MS.gene054236 | MS.gene065904 | 0.82564 | 4.20E-54 | -1.69E-46 |
| MS.gene05423 | MS.gene065904 | 0.83215 | 1.11E-55 | -1.69E-46 |
| MS.gene054291 | MS.gene065904 | -0.805418 | 1.35E-49 | -1.69E-46 |
| MS.gene054405 | MS.gene065904 | 0.833738 | 4.49E-56 | -1.69E-46 |
| MS.gene054559 | MS.gene065904 | 0.832882 | 7.33E-56 | -1.69E-46 |
| MS.gene054576 | MS.gene065904 | 0.814746 | 1.32E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene065904 | 0.855584 | 5.72E-62 | -1.69E-46 |
| MS.gene054775 | MS.gene065904 | 0.813231 | 2.84E-51 | -1.69E-46 |
| MS.gene05510 | MS.gene065904 | 0.816703 | 4.82E-52 | -1.69E-46 |
| MS.gene055227 | MS.gene065904 | 0.834806 | 2.42E-56 | -1.69E-46 |
| MS.gene055228 | MS.gene065904 | 0.85634 | 3.44E-62 | -1.69E-46 |
| MS.gene055464 | MS.gene065904 | 0.80987 | 1.53E-50 | -1.69E-46 |
| MS.gene055512 | MS.gene065904 | 0.808407 | 3.14E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene065904 | 0.817657 | 2.94E-52 | -1.69E-46 |
| MS.gene055589 | MS.gene065904 | 0.815615 | 8.44E-52 | -1.69E-46 |
| MS.gene055623 | MS.gene065904 | 0.815872 | 7.40E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene065904 | 0.811636 | 6.34E-51 | -1.69E-46 |
| MS.gene055724 | MS.gene065904 | 0.811566 | 6.57E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene065904 | 0.869628 | 2.69E-66 | -1.69E-46 |
| MS.gene055841 | MS.gene065904 | 0.825421 | 4.73E-54 | -1.69E-46 |
| MS.gene055926 | MS.gene065904 | 0.81704 | 4.05E-52 | -1.69E-46 |
| MS.gene05604 | MS.gene065904 | 0.823479 | 1.35E-53 | -1.69E-46 |
| MS.gene056050 | MS.gene065904 | 0.837019 | 6.65E-57 | -1.69E-46 |
| MS.gene056162 | MS.gene065904 | 0.816382 | 5.69E-52 | -1.69E-46 |
| MS.gene056173 | MS.gene065904 | 0.818707 | 1.70E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene065904 | 0.832746 | 7.93E-56 | -1.69E-46 |
| MS.gene056252 | MS.gene065904 | 0.821993 | 3.00E-53 | -1.69E-46 |
| MS.gene056272 | MS.gene065904 | 0.806914 | 6.53E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene065904 | 0.860114 | 2.59E-63 | -1.69E-46 |
| MS.gene056498 | MS.gene065904 | 0.802372 | 5.79E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene065904 | 0.83091 | 2.25E-55 | -1.69E-46 |
| MS.gene056595 | MS.gene065904 | 0.811821 | 5.78E-51 | -1.69E-46 |
| MS.gene056776 | MS.gene065904 | 0.822124 | 2.80E-53 | -1.69E-46 |
| MS.gene05686 | MS.gene065904 | 0.83915 | 1.88E-57 | -1.69E-46 |
| MS.gene05690 | MS.gene065904 | 0.818349 | 2.05E-52 | -1.69E-46 |
| MS.gene057021 | MS.gene065904 | 0.841771 | 3.88E-58 | -1.69E-46 |
| MS.gene057026 | MS.gene065904 | 0.852856 | 3.51E-61 | -1.69E-46 |
| MS.gene057027 | MS.gene065904 | 0.801958 | 7.04E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene065904 | 0.845072 | 5.10E-59 | -1.69E-46 |
| MS.gene057208 | MS.gene065904 | 0.857681 | 1.38E-62 | -1.69E-46 |
| MS.gene057414 | MS.gene065904 | 0.827272 | 1.71E-54 | -1.69E-46 |
| MS.gene057444 | MS.gene065904 | 0.876902 | 9.65E-69 | -1.69E-46 |
| MS.gene057598 | MS.gene065904 | 0.829557 | 4.82E-55 | -1.69E-46 |
| MS.gene057693 | MS.gene065904 | 0.806752 | 7.06E-50 | -1.69E-46 |
| MS.gene057855 | MS.gene065904 | 0.828399 | 9.19E-55 | -1.69E-46 |
| MS.gene057869 | MS.gene065904 | 0.812211 | 4.75E-51 | -1.69E-46 |
| MS.gene058008 | MS.gene065904 | 0.837254 | 5.79E-57 | -1.69E-46 |
| MS.gene058009 | MS.gene065904 | 0.858032 | 1.09E-62 | -1.69E-46 |
| MS.gene058010 | MS.gene065904 | 0.856113 | 4.01E-62 | -1.69E-46 |
| MS.gene058037 | MS.gene065904 | 0.829054 | 6.38E-55 | -1.69E-46 |
| MS.gene058294 | MS.gene065904 | 0.842433 | 2.59E-58 | -1.69E-46 |
| MS.gene05847 | MS.gene065904 | 0.802342 | 5.87E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene065904 | 0.8415 | 4.58E-58 | -1.69E-46 |
| MS.gene058829 | MS.gene065904 | 0.806409 | 8.34E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene065904 | 0.889939 | 1.55E-73 | -1.69E-46 |
| MS.gene059128 | MS.gene065904 | 0.803625 | 3.19E-49 | -1.69E-46 |
| MS.gene059161 | MS.gene065904 | 0.825825 | 3.79E-54 | -1.69E-46 |
| MS.gene059272 | MS.gene065904 | 0.832669 | 8.28E-56 | -1.69E-46 |
| MS.gene059382 | MS.gene065904 | 0.800801 | 1.22E-48 | -1.69E-46 |
| MS.gene059439 | MS.gene065904 | 0.807571 | 4.74E-50 | -1.69E-46 |
| MS.gene059584 | MS.gene065904 | 0.825472 | 4.60E-54 | -1.69E-46 |
| MS.gene059625 | MS.gene065904 | 0.832394 | 9.69E-56 | -1.69E-46 |
| MS.gene060011 | MS.gene065904 | 0.836309 | 1.01E-56 | -1.69E-46 |
| MS.gene060167 | MS.gene065904 | 0.821249 | 4.46E-53 | -1.69E-46 |
| MS.gene060310 | MS.gene065904 | 0.81993 | 8.96E-53 | -1.69E-46 |
| MS.gene060322 | MS.gene065904 | 0.830621 | 2.65E-55 | -1.69E-46 |
| MS.gene060373 | MS.gene065904 | 0.800563 | 1.36E-48 | -1.69E-46 |
| MS.gene060521 | MS.gene065904 | 0.84098 | 6.27E-58 | -1.69E-46 |
| MS.gene060572 | MS.gene065904 | 0.842603 | 2.34E-58 | -1.69E-46 |
| MS.gene060840 | MS.gene065904 | 0.826912 | 2.09E-54 | -1.69E-46 |
| MS.gene060918 | MS.gene065904 | 0.80442 | 2.18E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene065904 | 0.816467 | 5.45E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065904.t1 | MTR_4g478130 | 77.987 | 159 | 5 | 1 | 1 | 129 | 1 | 159 | 1.11e-80 | 234 |
| MS.gene065904.t1 | MTR_4g478140 | 61.875 | 160 | 30 | 2 | 1 | 129 | 1 | 160 | 3.73e-60 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCACCTTCTGAAATCTTTC+AGG | 0.221004 | 4.1:-27108601 | None:intergenic |
| CTCTTTGGCACTCTTGCTAT+TGG | 0.264799 | 4.1:+27108556 | MS.gene065904:CDS |
| AGATCCCATGCTTCACTTGC+TGG | 0.373899 | 4.1:-27108535 | None:intergenic |
| CTACAACGTCTGCCAATTGC+TGG | 0.406562 | 4.1:-27109714 | None:intergenic |
| AAAGAGATCAAGAAGATGTT+TGG | 0.416699 | 4.1:+27108481 | None:intergenic |
| ACTTGTTTCCATCCAGCAAT+TGG | 0.424661 | 4.1:+27109702 | MS.gene065904:CDS |
| GATGGAAACAAGTGCGGCAT+TGG | 0.436193 | 4.1:-27109692 | None:intergenic |
| AGTGAAGCATGGGATCTCTT+TGG | 0.449536 | 4.1:+27108541 | MS.gene065904:CDS |
| TTGCATCCTTGTTTCTGTTG+AGG | 0.456610 | 4.1:-27109753 | None:intergenic |
| AAAGAAGTGGAGGTGGTTGA+AGG | 0.462385 | 4.1:+27109550 | MS.gene065904:CDS |
| AAGAAGTGGAGGTGGTTGAA+GGG | 0.482356 | 4.1:+27109551 | MS.gene065904:CDS |
| TTGGCAGACGTTGTAGAAGT+TGG | 0.487317 | 4.1:+27109721 | MS.gene065904:CDS |
| CACACTATTTAGAGTTCGTA+TGG | 0.490157 | 4.1:+27109594 | MS.gene065904:CDS |
| CGTATGGAAGTGATAGAGAA+AGG | 0.493358 | 4.1:+27109610 | MS.gene065904:CDS |
| CAGAAGGTGGAGCTAATTGA+AGG | 0.500124 | 4.1:+27108613 | MS.gene065904:CDS |
| AGAAGTGGAGGTGGTTGAAG+GGG | 0.506956 | 4.1:+27109552 | MS.gene065904:CDS |
| GTGGAGCTAATTGAAGGAGA+TGG | 0.515580 | 4.1:+27108619 | MS.gene065904:CDS |
| AGAGTATGAAGTCAAGGAAG+AGG | 0.520181 | 4.1:+27109663 | MS.gene065904:CDS |
| TGAAGTCAAGGAAGAGGAAG+CGG | 0.526015 | 4.1:+27109669 | MS.gene065904:CDS |
| TGGCACTCTTGCTATTGGAA+AGG | 0.531710 | 4.1:+27108561 | MS.gene065904:CDS |
| TACATTAGAGTATGAAGTCA+AGG | 0.533592 | 4.1:+27109657 | MS.gene065904:CDS |
| GAGCTAATTGAAGGAGATGG+AGG | 0.540375 | 4.1:+27108622 | MS.gene065904:CDS |
| GAAGTGGAGGTGGTTGAAGG+GGG | 0.553306 | 4.1:+27109553 | MS.gene065904:CDS |
| CGTGCCAGCAAGTGAAGCAT+GGG | 0.555967 | 4.1:+27108531 | MS.gene065904:CDS |
| TGAAAAGCACATCAAAGAAG+TGG | 0.563701 | 4.1:+27109537 | MS.gene065904:intron |
| ACGTGCCAGCAAGTGAAGCA+TGG | 0.570168 | 4.1:+27108530 | MS.gene065904:CDS |
| AACGTCTGCCAATTGCTGGA+TGG | 0.574607 | 4.1:-27109710 | None:intergenic |
| GCACATCAAAGAAGTGGAGG+TGG | 0.578278 | 4.1:+27109543 | MS.gene065904:intron |
| AGCTAATTGAAGGAGATGGA+GGG | 0.580245 | 4.1:+27108623 | MS.gene065904:CDS |
| GCTAATTGAAGGAGATGGAG+GGG | 0.586950 | 4.1:+27108624 | MS.gene065904:CDS |
| GCCTGAAAGATTTCAGAAGG+TGG | 0.605828 | 4.1:+27108600 | MS.gene065904:CDS |
| TGCTATTGGAAAGGTCGTTG+AGG | 0.616559 | 4.1:+27108570 | MS.gene065904:CDS |
| GATGCCTGAAAGATTTCAGA+AGG | 0.633462 | 4.1:+27108597 | MS.gene065904:CDS |
| AAAGCACATCAAAGAAGTGG+AGG | 0.653324 | 4.1:+27109540 | MS.gene065904:intron |
| TTGCTGGATGGAAACAAGTG+CGG | 0.676967 | 4.1:-27109698 | None:intergenic |
| GAATTACCTCAACAGAAACA+AGG | 0.697908 | 4.1:+27109747 | MS.gene065904:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATAATGAAAATAACC+TGG | - | chr4.1:27108679-27108698 | None:intergenic | 15.0% |
| !! | ATTATTTACACTTGAATAAA+AGG | - | chr4.1:27109145-27109164 | None:intergenic | 15.0% |
| !!! | TAACATAACATTAATTGTTT+TGG | + | chr4.1:27109450-27109469 | MS.gene065904:intron | 15.0% |
| !!! | TATATTTTTGAGTATAATTG+TGG | - | chr4.1:27108724-27108743 | None:intergenic | 15.0% |
| !!! | TTTTATTCAAGTGTAAATAA+TGG | + | chr4.1:27109144-27109163 | MS.gene065904:intron | 15.0% |
| !! | AATTAAATAGAAAGTAGTCT+CGG | - | chr4.1:27108959-27108978 | None:intergenic | 20.0% |
| !! | ATGATGAATTAACATACTTA+CGG | + | chr4.1:27109350-27109369 | MS.gene065904:intron | 20.0% |
| !! | TTATCGTTACATAATTCATA+TGG | + | chr4.1:27108745-27108764 | MS.gene065904:intron | 20.0% |
| !!! | ATAACATTAATTGTTTTGGT+CGG | + | chr4.1:27109454-27109473 | MS.gene065904:intron | 20.0% |
| ! | AATCTATAGATTCATGAGTT+TGG | + | chr4.1:27109307-27109326 | MS.gene065904:intron | 25.0% |
| ! | TGATGAATTAACATACTTAC+GGG | + | chr4.1:27109351-27109370 | MS.gene065904:intron | 25.0% |
| !! | AACTTTTCTTTTAAACCAGT+TGG | - | chr4.1:27109502-27109521 | None:intergenic | 25.0% |
| !! | ACTTTTCTTTTAAACCAGTT+GGG | - | chr4.1:27109501-27109520 | None:intergenic | 25.0% |
| !! | CTATTGTATCATGAACATTT+TGG | + | chr4.1:27108996-27109015 | MS.gene065904:intron | 25.0% |
| ACATTTGATATGTAAGGATC+AGG | - | chr4.1:27108908-27108927 | None:intergenic | 30.0% | |
| GACATCACATTTGATATGTA+AGG | - | chr4.1:27108914-27108933 | None:intergenic | 30.0% | |
| TACATTAGAGTATGAAGTCA+AGG | + | chr4.1:27109657-27109676 | MS.gene065904:CDS | 30.0% | |
| TTCATCTTAAGCTGAATAAG+TGG | + | chr4.1:27108866-27108885 | MS.gene065904:intron | 30.0% | |
| ! | GTGCTTTTCATTATCAATCT+TGG | - | chr4.1:27109527-27109546 | None:intergenic | 30.0% |
| !! | ATTGATTTTGCCATCCAAAA+AGG | + | chr4.1:27109091-27109110 | MS.gene065904:intron | 30.0% |
| AAATGTGATGTCCCTAACAA+TGG | + | chr4.1:27108922-27108941 | MS.gene065904:intron | 35.0% | |
| ACACTTGAATAAAAGGCAAG+CGG | - | chr4.1:27109138-27109157 | None:intergenic | 35.0% | |
| ATTATGTCTATGTACAGGTG+GGG | + | chr4.1:27109268-27109287 | MS.gene065904:intron | 35.0% | |
| CATTATGTCTATGTACAGGT+GGG | + | chr4.1:27109267-27109286 | MS.gene065904:intron | 35.0% | |
| GAATTACCTCAACAGAAACA+AGG | + | chr4.1:27109747-27109766 | MS.gene065904:CDS | 35.0% | |
| GAGGATGTGTTTACAATTGA+TGG | - | chr4.1:27108792-27108811 | None:intergenic | 35.0% | |
| ! | CACACTATTTAGAGTTCGTA+TGG | + | chr4.1:27109594-27109613 | MS.gene065904:CDS | 35.0% |
| ! | TGAAAAGCACATCAAAGAAG+TGG | + | chr4.1:27109537-27109556 | MS.gene065904:intron | 35.0% |
| AAAGCACATCAAAGAAGTGG+AGG | + | chr4.1:27109540-27109559 | MS.gene065904:intron | 40.0% | |
| AACACAACATTCATGGACCT+AGG | - | chr4.1:27109064-27109083 | None:intergenic | 40.0% | |
| AATAGAAAGTAGTCTCGGCA+AGG | - | chr4.1:27108954-27108973 | None:intergenic | 40.0% | |
| ACTTGTTTCCATCCAGCAAT+TGG | + | chr4.1:27109702-27109721 | MS.gene065904:CDS | 40.0% | |
| AGAGTATGAAGTCAAGGAAG+AGG | + | chr4.1:27109663-27109682 | MS.gene065904:CDS | 40.0% | |
| AGCTAATTGAAGGAGATGGA+GGG | + | chr4.1:27108623-27108642 | MS.gene065904:CDS | 40.0% | |
| ATAGCAATGTCATGTCTCCT+AGG | + | chr4.1:27109044-27109063 | MS.gene065904:intron | 40.0% | |
| CACTTGAATAAAAGGCAAGC+GGG | - | chr4.1:27109137-27109156 | None:intergenic | 40.0% | |
| CATCGTGAACACAACATTCA+TGG | - | chr4.1:27109071-27109090 | None:intergenic | 40.0% | |
| CCACCATTATGTCTATGTAC+AGG | + | chr4.1:27109263-27109282 | MS.gene065904:intron | 40.0% | |
| CCACCTGTACATAGACATAA+TGG | - | chr4.1:27109269-27109288 | None:intergenic | 40.0% | |
| CCATTATGTCTATGTACAGG+TGG | + | chr4.1:27109266-27109285 | MS.gene065904:intron | 40.0% | |
| CCTGTACATAGACATAATGG+TGG | - | chr4.1:27109266-27109285 | None:intergenic | 40.0% | |
| CGTATGGAAGTGATAGAGAA+AGG | + | chr4.1:27109610-27109629 | MS.gene065904:CDS | 40.0% | |
| GATGCCTGAAAGATTTCAGA+AGG | + | chr4.1:27108597-27108616 | MS.gene065904:CDS | 40.0% | |
| TAACCACCTTATTCTCCACT+AGG | - | chr4.1:27108829-27108848 | None:intergenic | 40.0% | |
| TTATGTCTATGTACAGGTGG+GGG | + | chr4.1:27109269-27109288 | MS.gene065904:intron | 40.0% | |
| !! | TCCACCTTCTGAAATCTTTC+AGG | - | chr4.1:27108604-27108623 | None:intergenic | 40.0% |
| !! | TTGCATCCTTGTTTCTGTTG+AGG | - | chr4.1:27109756-27109775 | None:intergenic | 40.0% |
| AAAGAAGTGGAGGTGGTTGA+AGG | + | chr4.1:27109550-27109569 | MS.gene065904:CDS | 45.0% | |
| AAGAAGTGGAGGTGGTTGAA+GGG | + | chr4.1:27109551-27109570 | MS.gene065904:CDS | 45.0% | |
| AGTGAAGCATGGGATCTCTT+TGG | + | chr4.1:27108541-27108560 | MS.gene065904:CDS | 45.0% | |
| CAAGGATCGCTCCATTGTTA+GGG | - | chr4.1:27108936-27108955 | None:intergenic | 45.0% | |
| CAGAAGGTGGAGCTAATTGA+AGG | + | chr4.1:27108613-27108632 | MS.gene065904:CDS | 45.0% | |
| CGTTGACCTAGTGGAGAATA+AGG | + | chr4.1:27108820-27108839 | MS.gene065904:intron | 45.0% | |
| CTCAAACTCACATTCACTCC+AGG | + | chr4.1:27108658-27108677 | MS.gene065904:intron | 45.0% | |
| GAGCTAATTGAAGGAGATGG+AGG | + | chr4.1:27108622-27108641 | MS.gene065904:CDS | 45.0% | |
| GCCTGAAAGATTTCAGAAGG+TGG | + | chr4.1:27108600-27108619 | MS.gene065904:CDS | 45.0% | |
| GCTAATTGAAGGAGATGGAG+GGG | + | chr4.1:27108624-27108643 | MS.gene065904:CDS | 45.0% | |
| GGAGTTTGATCAGGTTTACC+TGG | + | chr4.1:27109475-27109494 | MS.gene065904:intron | 45.0% | |
| GTGGAGCTAATTGAAGGAGA+TGG | + | chr4.1:27108619-27108638 | MS.gene065904:CDS | 45.0% | |
| TGAAGTCAAGGAAGAGGAAG+CGG | + | chr4.1:27109669-27109688 | MS.gene065904:CDS | 45.0% | |
| TGACCTAGTGGAGAATAAGG+TGG | + | chr4.1:27108823-27108842 | MS.gene065904:intron | 45.0% | |
| TGCCATCCAAAAAGGTCTAG+CGG | + | chr4.1:27109099-27109118 | MS.gene065904:intron | 45.0% | |
| TGCTATTGGAAAGGTCGTTG+AGG | + | chr4.1:27108570-27108589 | MS.gene065904:CDS | 45.0% | |
| TGTAAACACATCCTCCGTTG+AGG | + | chr4.1:27108797-27108816 | MS.gene065904:intron | 45.0% | |
| TTGCTGGATGGAAACAAGTG+CGG | - | chr4.1:27109701-27109720 | None:intergenic | 45.0% | |
| TTGGCAGACGTTGTAGAAGT+TGG | + | chr4.1:27109721-27109740 | MS.gene065904:CDS | 45.0% | |
| ! | CTCTTTGGCACTCTTGCTAT+TGG | + | chr4.1:27108556-27108575 | MS.gene065904:CDS | 45.0% |
| ! | TCTTTTAAACCAGTTGGGCC+AGG | - | chr4.1:27109496-27109515 | None:intergenic | 45.0% |
| !! | GTTTTGGTCGGAGTTTGATC+AGG | + | chr4.1:27109466-27109485 | MS.gene065904:intron | 45.0% |
| !! | TGGCACTCTTGCTATTGGAA+AGG | + | chr4.1:27108561-27108580 | MS.gene065904:CDS | 45.0% |
| AACGTCTGCCAATTGCTGGA+TGG | - | chr4.1:27109713-27109732 | None:intergenic | 50.0% | |
| AGAAGTGGAGGTGGTTGAAG+GGG | + | chr4.1:27109552-27109571 | MS.gene065904:CDS | 50.0% | |
| AGATCCCATGCTTCACTTGC+TGG | - | chr4.1:27108538-27108557 | None:intergenic | 50.0% | |
| ATTGAAGGAGATGGAGGGGT+TGG | + | chr4.1:27108628-27108647 | MS.gene065904:intron | 50.0% | |
| CTACAACGTCTGCCAATTGC+TGG | - | chr4.1:27109717-27109736 | None:intergenic | 50.0% | |
| CTATGTACAGGTGGGGGATT+CGG | + | chr4.1:27109275-27109294 | MS.gene065904:intron | 50.0% | |
| GAAGGGGGATGCTTAGATCT+TGG | + | chr4.1:27109568-27109587 | MS.gene065904:CDS | 50.0% | |
| GATGGAAACAAGTGCGGCAT+TGG | - | chr4.1:27109695-27109714 | None:intergenic | 50.0% | |
| GCAAGGATCGCTCCATTGTT+AGG | - | chr4.1:27108937-27108956 | None:intergenic | 50.0% | |
| GCACATCAAAGAAGTGGAGG+TGG | + | chr4.1:27109543-27109562 | MS.gene065904:intron | 50.0% | |
| TTGAAGGAGATGGAGGGGTT+GGG | + | chr4.1:27108629-27108648 | MS.gene065904:intron | 50.0% | |
| ACGTGCCAGCAAGTGAAGCA+TGG | + | chr4.1:27108530-27108549 | MS.gene065904:CDS | 55.0% | |
| CCACTAGGTCAACGCCTCAA+CGG | - | chr4.1:27108814-27108833 | None:intergenic | 55.0% | |
| CGTGCCAGCAAGTGAAGCAT+GGG | + | chr4.1:27108531-27108550 | MS.gene065904:CDS | 55.0% | |
| GAAGTGGAGGTGGTTGAAGG+GGG | + | chr4.1:27109553-27109572 | MS.gene065904:CDS | 55.0% | |
| TCAGGTTTACCTGGCCCAAC+TGG | + | chr4.1:27109484-27109503 | MS.gene065904:intron | 55.0% | |
| ! | CGCCGCTAGACCTTTTTGGA+TGG | - | chr4.1:27109104-27109123 | None:intergenic | 55.0% |
| CTAGGTCAACGCCTCAACGG+AGG | - | chr4.1:27108811-27108830 | None:intergenic | 60.0% | |
| ! | GCTGCGCCGCTAGACCTTTT+TGG | - | chr4.1:27109108-27109127 | None:intergenic | 60.0% |
| !! | CCGTTGAGGCGTTGACCTAG+TGG | + | chr4.1:27108811-27108830 | MS.gene065904:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 27108496 | 27109783 | 27108496 | ID=MS.gene065904 |
| chr4.1 | mRNA | 27108496 | 27109783 | 27108496 | ID=MS.gene065904.t1;Parent=MS.gene065904 |
| chr4.1 | exon | 27108496 | 27108645 | 27108496 | ID=MS.gene065904.t1.exon1;Parent=MS.gene065904.t1 |
| chr4.1 | CDS | 27108496 | 27108645 | 27108496 | ID=cds.MS.gene065904.t1;Parent=MS.gene065904.t1 |
| chr4.1 | exon | 27109544 | 27109783 | 27109544 | ID=MS.gene065904.t1.exon2;Parent=MS.gene065904.t1 |
| chr4.1 | CDS | 27109544 | 27109783 | 27109544 | ID=cds.MS.gene065904.t1;Parent=MS.gene065904.t1 |
| Gene Sequence |
| Protein sequence |
