Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073853.t1 | XP_013468327.1 | 92.2 | 880 | 69 | 0 | 1 | 880 | 1 | 880 | 0.00E+00 | 1234.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073853.t1 | Q9C895 | 44.1 | 903 | 479 | 4 | 1 | 880 | 1 | 900 | 8.2e-168 | 592.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073853.t1 | A0A072VK57 | 92.2 | 880 | 69 | 0 | 1 | 880 | 1 | 880 | 0.0e+00 | 1234.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene073853 | 0.824283 | 8.78E-54 | -1.69E-46 |
MS.gene049159 | MS.gene073853 | 0.851793 | 7.04E-61 | -1.69E-46 |
MS.gene049254 | MS.gene073853 | 0.864872 | 8.90E-65 | -1.69E-46 |
MS.gene049343 | MS.gene073853 | 0.841881 | 3.63E-58 | -1.69E-46 |
MS.gene049404 | MS.gene073853 | 0.835087 | 2.06E-56 | -1.69E-46 |
MS.gene049435 | MS.gene073853 | 0.839427 | 1.59E-57 | -1.69E-46 |
MS.gene049452 | MS.gene073853 | 0.840081 | 1.08E-57 | -1.69E-46 |
MS.gene049501 | MS.gene073853 | 0.806239 | 9.06E-50 | -1.69E-46 |
MS.gene049850 | MS.gene073853 | 0.813385 | 2.63E-51 | -1.69E-46 |
MS.gene049983 | MS.gene073853 | 0.836928 | 7.02E-57 | -1.69E-46 |
MS.gene050026 | MS.gene073853 | 0.830352 | 3.08E-55 | -1.69E-46 |
MS.gene050073 | MS.gene073853 | 0.810101 | 1.36E-50 | -1.69E-46 |
MS.gene050119 | MS.gene073853 | 0.826995 | 2.00E-54 | -1.69E-46 |
MS.gene050156 | MS.gene073853 | 0.817571 | 3.08E-52 | -1.69E-46 |
MS.gene050355 | MS.gene073853 | 0.810165 | 1.32E-50 | -1.69E-46 |
MS.gene050442 | MS.gene073853 | 0.832721 | 8.04E-56 | -1.69E-46 |
MS.gene050559 | MS.gene073853 | 0.827204 | 1.78E-54 | -1.69E-46 |
MS.gene050561 | MS.gene073853 | 0.830344 | 3.10E-55 | -1.69E-46 |
MS.gene050562 | MS.gene073853 | 0.81226 | 4.64E-51 | -1.69E-46 |
MS.gene050605 | MS.gene073853 | 0.832706 | 8.11E-56 | -1.69E-46 |
MS.gene050680 | MS.gene073853 | 0.815146 | 1.07E-51 | -1.69E-46 |
MS.gene050719 | MS.gene073853 | 0.815627 | 8.39E-52 | -1.69E-46 |
MS.gene050721 | MS.gene073853 | 0.814623 | 1.40E-51 | -1.69E-46 |
MS.gene050724 | MS.gene073853 | 0.80527 | 1.45E-49 | -1.69E-46 |
MS.gene050750 | MS.gene073853 | 0.811707 | 6.12E-51 | -1.69E-46 |
MS.gene050759 | MS.gene073853 | 0.819909 | 9.07E-53 | -1.69E-46 |
MS.gene050780 | MS.gene073853 | 0.806845 | 6.75E-50 | -1.69E-46 |
MS.gene050844 | MS.gene073853 | 0.829308 | 5.53E-55 | -1.69E-46 |
MS.gene050953 | MS.gene073853 | 0.821958 | 3.06E-53 | -1.69E-46 |
MS.gene050962 | MS.gene073853 | 0.805809 | 1.12E-49 | -1.69E-46 |
MS.gene051181 | MS.gene073853 | 0.843954 | 1.02E-58 | -1.69E-46 |
MS.gene051198 | MS.gene073853 | 0.835739 | 1.41E-56 | -1.69E-46 |
MS.gene051279 | MS.gene073853 | 0.816045 | 6.77E-52 | -1.69E-46 |
MS.gene051332 | MS.gene073853 | 0.803034 | 4.23E-49 | -1.69E-46 |
MS.gene051368 | MS.gene073853 | 0.827305 | 1.68E-54 | -1.69E-46 |
MS.gene051543 | MS.gene073853 | 0.801894 | 7.26E-49 | -1.69E-46 |
MS.gene051744 | MS.gene073853 | 0.863864 | 1.84E-64 | -1.69E-46 |
MS.gene051800 | MS.gene073853 | 0.830405 | 2.99E-55 | -1.69E-46 |
MS.gene052012 | MS.gene073853 | 0.813706 | 2.23E-51 | -1.69E-46 |
MS.gene052020 | MS.gene073853 | 0.812411 | 4.30E-51 | -1.69E-46 |
MS.gene052190 | MS.gene073853 | 0.818867 | 1.57E-52 | -1.69E-46 |
MS.gene052208 | MS.gene073853 | 0.813574 | 2.39E-51 | -1.69E-46 |
MS.gene052239 | MS.gene073853 | -0.800198 | 1.61E-48 | -1.69E-46 |
MS.gene052323 | MS.gene073853 | 0.810518 | 1.11E-50 | -1.69E-46 |
MS.gene052333 | MS.gene073853 | 0.834563 | 2.79E-56 | -1.69E-46 |
MS.gene052500 | MS.gene073853 | 0.809693 | 1.67E-50 | -1.69E-46 |
MS.gene052502 | MS.gene073853 | 0.800609 | 1.33E-48 | -1.69E-46 |
MS.gene052516 | MS.gene073853 | 0.811863 | 5.66E-51 | -1.69E-46 |
MS.gene052519 | MS.gene073853 | 0.845957 | 2.94E-59 | -1.69E-46 |
MS.gene052582 | MS.gene073853 | 0.818706 | 1.70E-52 | -1.69E-46 |
MS.gene052584 | MS.gene073853 | 0.81916 | 1.34E-52 | -1.69E-46 |
MS.gene052611 | MS.gene073853 | 0.833645 | 4.74E-56 | -1.69E-46 |
MS.gene052674 | MS.gene073853 | 0.810267 | 1.26E-50 | -1.69E-46 |
MS.gene052675 | MS.gene073853 | 0.810429 | 1.16E-50 | -1.69E-46 |
MS.gene052677 | MS.gene073853 | 0.814411 | 1.56E-51 | -1.69E-46 |
MS.gene052773 | MS.gene073853 | 0.826509 | 2.61E-54 | -1.69E-46 |
MS.gene052826 | MS.gene073853 | 0.805492 | 1.30E-49 | -1.69E-46 |
MS.gene052863 | MS.gene073853 | 0.848306 | 6.67E-60 | -1.69E-46 |
MS.gene052867 | MS.gene073853 | 0.817584 | 3.06E-52 | -1.69E-46 |
MS.gene052896 | MS.gene073853 | 0.804648 | 1.95E-49 | -1.69E-46 |
MS.gene052954 | MS.gene073853 | 0.8228 | 1.95E-53 | -1.69E-46 |
MS.gene053006 | MS.gene073853 | 0.817457 | 3.27E-52 | -1.69E-46 |
MS.gene053008 | MS.gene073853 | 0.844666 | 6.56E-59 | -1.69E-46 |
MS.gene053079 | MS.gene073853 | 0.820944 | 5.25E-53 | -1.69E-46 |
MS.gene053166 | MS.gene073853 | 0.839827 | 1.26E-57 | -1.69E-46 |
MS.gene053201 | MS.gene073853 | 0.821385 | 4.15E-53 | -1.69E-46 |
MS.gene053202 | MS.gene073853 | 0.81552 | 8.87E-52 | -1.69E-46 |
MS.gene053226 | MS.gene073853 | 0.857107 | 2.04E-62 | -1.69E-46 |
MS.gene053296 | MS.gene073853 | 0.819281 | 1.26E-52 | -1.69E-46 |
MS.gene05364 | MS.gene073853 | 0.804413 | 2.19E-49 | -1.69E-46 |
MS.gene053931 | MS.gene073853 | 0.800341 | 1.51E-48 | -1.69E-46 |
MS.gene053966 | MS.gene073853 | 0.809218 | 2.11E-50 | -1.69E-46 |
MS.gene053998 | MS.gene073853 | 0.842225 | 2.94E-58 | -1.69E-46 |
MS.gene05414 | MS.gene073853 | 0.809011 | 2.34E-50 | -1.69E-46 |
MS.gene05415 | MS.gene073853 | 0.847105 | 1.43E-59 | -1.69E-46 |
MS.gene054236 | MS.gene073853 | 0.840531 | 8.22E-58 | -1.69E-46 |
MS.gene05423 | MS.gene073853 | 0.807239 | 5.57E-50 | -1.69E-46 |
MS.gene054405 | MS.gene073853 | 0.816613 | 5.05E-52 | -1.69E-46 |
MS.gene054467 | MS.gene073853 | 0.80426 | 2.35E-49 | -1.69E-46 |
MS.gene054472 | MS.gene073853 | 0.802796 | 4.73E-49 | -1.69E-46 |
MS.gene054479 | MS.gene073853 | 0.838471 | 2.82E-57 | -1.69E-46 |
MS.gene054559 | MS.gene073853 | 0.835755 | 1.39E-56 | -1.69E-46 |
MS.gene054576 | MS.gene073853 | 0.806353 | 8.57E-50 | -1.69E-46 |
MS.gene054582 | MS.gene073853 | 0.801055 | 1.08E-48 | -1.69E-46 |
MS.gene054651 | MS.gene073853 | 0.848863 | 4.67E-60 | -1.69E-46 |
MS.gene054657 | MS.gene073853 | 0.821096 | 4.84E-53 | -1.69E-46 |
MS.gene054658 | MS.gene073853 | 0.818417 | 1.98E-52 | -1.69E-46 |
MS.gene054775 | MS.gene073853 | 0.834332 | 3.19E-56 | -1.69E-46 |
MS.gene054994 | MS.gene073853 | 0.83857 | 2.66E-57 | -1.69E-46 |
MS.gene05510 | MS.gene073853 | 0.8083 | 3.31E-50 | -1.69E-46 |
MS.gene055166 | MS.gene073853 | 0.81667 | 4.91E-52 | -1.69E-46 |
MS.gene055222 | MS.gene073853 | 0.812285 | 4.58E-51 | -1.69E-46 |
MS.gene055227 | MS.gene073853 | 0.848704 | 5.17E-60 | -1.69E-46 |
MS.gene055228 | MS.gene073853 | 0.827921 | 1.20E-54 | -1.69E-46 |
MS.gene055230 | MS.gene073853 | 0.800716 | 1.26E-48 | -1.69E-46 |
MS.gene055464 | MS.gene073853 | 0.804097 | 2.54E-49 | -1.69E-46 |
MS.gene055512 | MS.gene073853 | 0.810798 | 9.64E-51 | -1.69E-46 |
MS.gene055586 | MS.gene073853 | 0.817554 | 3.10E-52 | -1.69E-46 |
MS.gene055589 | MS.gene073853 | 0.804909 | 1.72E-49 | -1.69E-46 |
MS.gene055623 | MS.gene073853 | 0.814082 | 1.85E-51 | -1.69E-46 |
MS.gene055701 | MS.gene073853 | 0.825949 | 3.55E-54 | -1.69E-46 |
MS.gene055818 | MS.gene073853 | 0.85749 | 1.58E-62 | -1.69E-46 |
MS.gene055841 | MS.gene073853 | 0.809624 | 1.73E-50 | -1.69E-46 |
MS.gene055926 | MS.gene073853 | 0.81649 | 5.38E-52 | -1.69E-46 |
MS.gene05604 | MS.gene073853 | 0.80995 | 1.47E-50 | -1.69E-46 |
MS.gene056050 | MS.gene073853 | 0.842819 | 2.05E-58 | -1.69E-46 |
MS.gene056162 | MS.gene073853 | 0.842205 | 2.98E-58 | -1.69E-46 |
MS.gene056173 | MS.gene073853 | 0.839303 | 1.72E-57 | -1.69E-46 |
MS.gene056174 | MS.gene073853 | 0.838043 | 3.64E-57 | -1.69E-46 |
MS.gene056252 | MS.gene073853 | 0.814253 | 1.69E-51 | -1.69E-46 |
MS.gene056366 | MS.gene073853 | 0.832096 | 1.15E-55 | -1.69E-46 |
MS.gene056506 | MS.gene073853 | 0.836747 | 7.81E-57 | -1.69E-46 |
MS.gene056595 | MS.gene073853 | 0.802931 | 4.44E-49 | -1.69E-46 |
MS.gene05659 | MS.gene073853 | 0.810622 | 1.05E-50 | -1.69E-46 |
MS.gene05686 | MS.gene073853 | 0.849164 | 3.86E-60 | -1.69E-46 |
MS.gene05690 | MS.gene073853 | 0.812738 | 3.64E-51 | -1.69E-46 |
MS.gene057026 | MS.gene073853 | 0.831885 | 1.30E-55 | -1.69E-46 |
MS.gene057060 | MS.gene073853 | 0.804433 | 2.16E-49 | -1.69E-46 |
MS.gene057208 | MS.gene073853 | 0.859424 | 4.18E-63 | -1.69E-46 |
MS.gene057444 | MS.gene073853 | 0.83328 | 5.84E-56 | -1.69E-46 |
MS.gene057598 | MS.gene073853 | 0.859722 | 3.40E-63 | -1.69E-46 |
MS.gene057601 | MS.gene073853 | 0.803801 | 2.93E-49 | -1.69E-46 |
MS.gene057693 | MS.gene073853 | 0.826601 | 2.48E-54 | -1.69E-46 |
MS.gene057855 | MS.gene073853 | 0.889136 | 3.17E-73 | -1.69E-46 |
MS.gene057869 | MS.gene073853 | 0.840379 | 9.01E-58 | -1.69E-46 |
MS.gene057915 | MS.gene073853 | 0.831271 | 1.84E-55 | -1.69E-46 |
MS.gene058008 | MS.gene073853 | 0.820386 | 7.05E-53 | -1.69E-46 |
MS.gene058009 | MS.gene073853 | 0.858521 | 7.78E-63 | -1.69E-46 |
MS.gene058010 | MS.gene073853 | 0.867092 | 1.77E-65 | -1.69E-46 |
MS.gene058037 | MS.gene073853 | 0.808011 | 3.82E-50 | -1.69E-46 |
MS.gene058146 | MS.gene073853 | 0.810624 | 1.05E-50 | -1.69E-46 |
MS.gene058427 | MS.gene073853 | 0.812656 | 3.80E-51 | -1.69E-46 |
MS.gene058548 | MS.gene073853 | 0.822137 | 2.78E-53 | -1.69E-46 |
MS.gene058595 | MS.gene073853 | 0.829773 | 4.27E-55 | -1.69E-46 |
MS.gene058625 | MS.gene073853 | 0.84087 | 6.70E-58 | -1.69E-46 |
MS.gene058636 | MS.gene073853 | 0.800146 | 1.65E-48 | -1.69E-46 |
MS.gene05868 | MS.gene073853 | 0.807355 | 5.26E-50 | -1.69E-46 |
MS.gene058781 | MS.gene073853 | 0.821136 | 4.74E-53 | -1.69E-46 |
MS.gene058783 | MS.gene073853 | 0.839261 | 1.76E-57 | -1.69E-46 |
MS.gene058829 | MS.gene073853 | 0.821089 | 4.86E-53 | -1.69E-46 |
MS.gene058919 | MS.gene073853 | 0.801177 | 1.02E-48 | -1.69E-46 |
MS.gene058979 | MS.gene073853 | 0.967564 | 1.88E-127 | -1.69E-46 |
MS.gene059272 | MS.gene073853 | 0.804475 | 2.12E-49 | -1.69E-46 |
MS.gene059283 | MS.gene073853 | 0.818006 | 2.46E-52 | -1.69E-46 |
MS.gene059306 | MS.gene073853 | 0.819889 | 9.16E-53 | -1.69E-46 |
MS.gene059382 | MS.gene073853 | 0.81353 | 2.44E-51 | -1.69E-46 |
MS.gene059550 | MS.gene073853 | 0.814714 | 1.34E-51 | -1.69E-46 |
MS.gene059570 | MS.gene073853 | 0.8226 | 2.17E-53 | -1.69E-46 |
MS.gene059625 | MS.gene073853 | 0.813261 | 2.80E-51 | -1.69E-46 |
MS.gene059789 | MS.gene073853 | 0.809356 | 1.97E-50 | -1.69E-46 |
MS.gene05979 | MS.gene073853 | 0.811898 | 5.56E-51 | -1.69E-46 |
MS.gene059842 | MS.gene073853 | 0.827802 | 1.28E-54 | -1.69E-46 |
MS.gene060011 | MS.gene073853 | 0.853209 | 2.78E-61 | -1.69E-46 |
MS.gene060167 | MS.gene073853 | 0.808807 | 2.58E-50 | -1.69E-46 |
MS.gene060310 | MS.gene073853 | 0.835589 | 1.54E-56 | -1.69E-46 |
MS.gene060322 | MS.gene073853 | 0.843665 | 1.22E-58 | -1.69E-46 |
MS.gene060521 | MS.gene073853 | 0.803056 | 4.18E-49 | -1.69E-46 |
MS.gene06052 | MS.gene073853 | 0.842005 | 3.37E-58 | -1.69E-46 |
MS.gene060572 | MS.gene073853 | 0.812393 | 4.34E-51 | -1.69E-46 |
MS.gene060683 | MS.gene073853 | 0.812034 | 5.19E-51 | -1.69E-46 |
MS.gene060685 | MS.gene073853 | 0.818546 | 1.85E-52 | -1.69E-46 |
MS.gene060803 | MS.gene073853 | 0.800099 | 1.69E-48 | -1.69E-46 |
MS.gene060935 | MS.gene073853 | 0.848438 | 6.13E-60 | -1.69E-46 |
MS.gene060937 | MS.gene073853 | 0.835277 | 1.84E-56 | -1.69E-46 |
MS.gene060998 | MS.gene073853 | 0.815736 | 7.94E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073853.t1 | MTR_1g068830 | 97.045 | 880 | 26 | 0 | 1 | 880 | 1 | 880 | 0.0 | 1733 |
MS.gene073853.t1 | MTR_5g085010 | 87.841 | 880 | 107 | 0 | 1 | 880 | 1 | 880 | 0.0 | 1502 |
MS.gene073853.t1 | MTR_7g046250 | 31.719 | 867 | 580 | 6 | 18 | 880 | 19 | 877 | 3.63e-127 | 404 |
MS.gene073853.t1 | MTR_7g046250 | 32.993 | 685 | 448 | 5 | 18 | 699 | 19 | 695 | 1.98e-98 | 323 |
MS.gene073853.t1 | MTR_5g065520 | 50.347 | 288 | 47 | 3 | 275 | 551 | 1 | 203 | 4.46e-68 | 233 |
MS.gene073853.t1 | MTR_3g060950 | 76.429 | 140 | 17 | 2 | 724 | 861 | 73 | 198 | 8.44e-59 | 200 |
MS.gene073853.t1 | MTR_8g064230 | 82.143 | 84 | 15 | 0 | 252 | 335 | 2 | 85 | 4.62e-38 | 137 |
MS.gene073853.t1 | MTR_5g065540 | 70.175 | 57 | 15 | 1 | 39 | 93 | 2 | 58 | 1.96e-18 | 80.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073853.t1 | AT1G55250 | 55.215 | 882 | 392 | 3 | 1 | 880 | 1 | 881 | 0.0 | 932 |
MS.gene073853.t1 | AT1G55250 | 54.111 | 900 | 392 | 6 | 1 | 880 | 1 | 899 | 0.0 | 913 |
MS.gene073853.t1 | AT1G55250 | 53.710 | 903 | 392 | 5 | 1 | 880 | 1 | 900 | 0.0 | 909 |
MS.gene073853.t1 | AT1G55250 | 58.158 | 380 | 158 | 1 | 502 | 880 | 4 | 383 | 9.61e-144 | 431 |
MS.gene073853.t1 | AT1G55250 | 56.091 | 394 | 158 | 2 | 502 | 880 | 4 | 397 | 1.31e-139 | 421 |
MS.gene073853.t1 | AT2G44950 | 30.926 | 886 | 586 | 11 | 8 | 880 | 6 | 878 | 1.47e-117 | 379 |
MS.gene073853.t1 | AT2G44950 | 30.015 | 673 | 448 | 9 | 8 | 669 | 6 | 666 | 2.85e-74 | 257 |
Find 163 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCCCTCAATAGAATCTTTC+TGG | 0.156125 | 1.3:+47926134 | None:intergenic |
CTTCCACATCTTTCTGAATT+TGG | 0.157200 | 1.3:+47917618 | None:intergenic |
CAGAATTCAGCTCAGCAATT+TGG | 0.228587 | 1.3:+47916619 | None:intergenic |
GAAGGAGTTGAAGTTGAAAT+TGG | 0.231877 | 1.3:-47922689 | MS.gene073853:CDS |
TCAACATTGGATTGCTGAAT+TGG | 0.236912 | 1.3:-47922864 | MS.gene073853:CDS |
CAAATGTGCTGAACAGGTTT+TGG | 0.250460 | 1.3:-47921068 | MS.gene073853:CDS |
GCTGAACAAGCTGCTGATTC+TGG | 0.251145 | 1.3:+47926607 | None:intergenic |
ATTGACAAACCTGAAGTTCT+TGG | 0.253258 | 1.3:+47923051 | None:intergenic |
TTTCTAGTTGGTTGATGATA+TGG | 0.255629 | 1.3:-47926395 | MS.gene073853:intron |
CTTTGCGTCGGTTATCTACT+AGG | 0.292056 | 1.3:-47926069 | MS.gene073853:CDS |
GGAGAATGGTTGGTTGAATT+TGG | 0.292304 | 1.3:+47927488 | None:intergenic |
GTTACAGATTGAAAAGTTAC+AGG | 0.298097 | 1.3:-47920688 | MS.gene073853:intron |
TCTGACATTAAACGCCTTAC+AGG | 0.299793 | 1.3:-47925642 | MS.gene073853:intron |
CAAAGATTCTTTGGAAACTT+TGG | 0.300310 | 1.3:-47926344 | MS.gene073853:CDS |
GATTGATGATATGACGAAAA+AGG | 0.308345 | 1.3:-47925766 | MS.gene073853:CDS |
CTTTCAGATTCTCTAACTTC+TGG | 0.330016 | 1.3:+47919834 | None:intergenic |
GCCCTGTCTGCAGGCTTCTC+AGG | 0.332687 | 1.3:+47923273 | None:intergenic |
AACGCAGAAACACGCTTTAC+AGG | 0.334237 | 1.3:-47926577 | MS.gene073853:CDS |
TCGGGAGTTAGAATTTGTTT+TGG | 0.337092 | 1.3:-47920658 | MS.gene073853:CDS |
TGGGAGAGGCAAAGATTCTT+TGG | 0.337753 | 1.3:-47926353 | MS.gene073853:CDS |
TATCATCAATCTTAGACATT+TGG | 0.341485 | 1.3:+47925778 | None:intergenic |
TTCAGCTTTATCTAAAGAAA+TGG | 0.347729 | 1.3:-47922411 | MS.gene073853:CDS |
AAGCTGAACTAGAGGAGTTA+AGG | 0.349863 | 1.3:-47919692 | MS.gene073853:CDS |
TTCCCACCTGGCAAACTCTA+AGG | 0.353582 | 1.3:+47917709 | None:intergenic |
AGAGTTTGCCAGGTGGGAAT+TGG | 0.354577 | 1.3:-47917705 | MS.gene073853:CDS |
TCAGCTTTATCTAAAGAAAT+GGG | 0.360839 | 1.3:-47922410 | MS.gene073853:CDS |
AAAGAAATTCCAAGAACTTC+AGG | 0.368208 | 1.3:-47923060 | MS.gene073853:intron |
GTTGATGATATGGCTCTTCT+CGG | 0.369040 | 1.3:-47926385 | MS.gene073853:CDS |
TGCAAACAAATGTGCTGAAC+AGG | 0.371578 | 1.3:-47921074 | MS.gene073853:CDS |
TCAATGTTCCTGTAGACTAT+TGG | 0.374103 | 1.3:-47918789 | MS.gene073853:intron |
AGATGAGGCTTCTTGTTGTT+GGG | 0.375831 | 1.3:+47927539 | None:intergenic |
TTCCCTTCCTTCGTGTCATC+CGG | 0.390660 | 1.3:-47926182 | MS.gene073853:CDS |
TCCTAGAGTCAGAATTGTTA+TGG | 0.391813 | 1.3:+47922641 | None:intergenic |
CAAATGATCAACTTCAACAT+TGG | 0.395091 | 1.3:-47922877 | MS.gene073853:CDS |
AAACCCATGGCCCTGTCTGC+AGG | 0.401224 | 1.3:+47923264 | None:intergenic |
GCTCTTCTCGGGGTACAAGC+TGG | 0.401727 | 1.3:-47926373 | MS.gene073853:CDS |
CCTGCCTGTGGAACAGCATT+TGG | 0.404398 | 1.3:-47915524 | MS.gene073853:CDS |
AACCTCGATTTCAGATATAT+AGG | 0.404698 | 1.3:+47918904 | None:intergenic |
TACGATGGAAGAGGCCAAAC+AGG | 0.408232 | 1.3:-47922560 | MS.gene073853:CDS |
AGCTGAACTAGAGGAGTTAA+GGG | 0.411687 | 1.3:-47919691 | MS.gene073853:CDS |
CAATTCCCGAGTATACTCTT+TGG | 0.412514 | 1.3:-47922900 | MS.gene073853:CDS |
ATCCAGAAAGATTCTATTGA+GGG | 0.419466 | 1.3:-47926136 | MS.gene073853:CDS |
ATTTAGCGGCTTCTGATAGA+AGG | 0.423094 | 1.3:+47917762 | None:intergenic |
TTGATGATATGGCTCTTCTC+GGG | 0.429244 | 1.3:-47926384 | MS.gene073853:CDS |
AAGATGAGGCTTCTTGTTGT+TGG | 0.429347 | 1.3:+47927538 | None:intergenic |
GGTGAAACGCGGGAAGAAAC+AGG | 0.432248 | 1.3:+47927509 | None:intergenic |
TCAAGATTTCTTTGTATACA+TGG | 0.438637 | 1.3:+47915566 | None:intergenic |
CAGCCGCCTTAGAGTTTGCC+AGG | 0.439108 | 1.3:-47917715 | MS.gene073853:CDS |
AAAAGTTACAGGAGGAGAAT+CGG | 0.444664 | 1.3:-47920677 | MS.gene073853:CDS |
TCCAATGCTGATTCAGTGAA+TGG | 0.450902 | 1.3:-47923306 | MS.gene073853:CDS |
GGAAGCTTGTGAAAAGGAAT+TGG | 0.451020 | 1.3:-47917600 | MS.gene073853:CDS |
TTCATCTTGAGTACATTTAG+CGG | 0.459767 | 1.3:+47917748 | None:intergenic |
AATGCAAAAGGATGCAGCTA+TGG | 0.467843 | 1.3:-47923340 | MS.gene073853:CDS |
TGCTCCGTCCAGGCTGATGC+AGG | 0.468473 | 1.3:-47926642 | MS.gene073853:intron |
TCCTGAGAAGCCTGCAGACA+GGG | 0.471244 | 1.3:-47923274 | MS.gene073853:CDS |
ATCTAAAGAAATGGGGATGA+TGG | 0.472663 | 1.3:-47922402 | MS.gene073853:CDS |
CTCTTCTCGGGGTACAAGCT+GGG | 0.477873 | 1.3:-47926372 | MS.gene073853:CDS |
ACGCAGACCAGTATCCTGTT+TGG | 0.480102 | 1.3:+47922546 | None:intergenic |
CAGGGTTAACGTCTCAAAAC+GGG | 0.481009 | 1.3:-47922713 | MS.gene073853:CDS |
TCCATTCACTGAATCAGCAT+TGG | 0.484524 | 1.3:+47923305 | None:intergenic |
GAAGAGGCCAAACAGGATAC+TGG | 0.487514 | 1.3:-47922553 | MS.gene073853:intron |
CCCAGTTTGATGAAAATGAA+AGG | 0.491792 | 1.3:-47919668 | MS.gene073853:intron |
CATTTGCCAAAGAGTATACT+CGG | 0.492660 | 1.3:+47922894 | None:intergenic |
CTACATAGAAGTAGATCATC+CGG | 0.493035 | 1.3:+47926163 | None:intergenic |
GCCTAGAAGATTATCAGAAA+AGG | 0.494202 | 1.3:-47920626 | MS.gene073853:intron |
AAGAATTGAGGATATAGGTC+AGG | 0.494365 | 1.3:-47926002 | MS.gene073853:CDS |
CGCCTTAGAGTTTGCCAGGT+GGG | 0.494648 | 1.3:-47917711 | MS.gene073853:CDS |
TTATGTCATGCAGGAGTTCA+CGG | 0.495128 | 1.3:-47916677 | MS.gene073853:intron |
TTCCACAGGCAGGACATTTG+CGG | 0.497983 | 1.3:+47915534 | None:intergenic |
AAACATTTCAAATACCTGTA+AGG | 0.500187 | 1.3:+47925628 | None:intergenic |
AAAGTTACAGGAGGAGAATC+GGG | 0.500243 | 1.3:-47920676 | MS.gene073853:CDS |
ATGGAAAGAATTGAGGATAT+AGG | 0.501506 | 1.3:-47926007 | MS.gene073853:CDS |
AGGCAGGACATTTGCGGTGA+CGG | 0.501630 | 1.3:+47915540 | None:intergenic |
AATCCAGAAAGATTCTATTG+AGG | 0.504272 | 1.3:-47926137 | MS.gene073853:CDS |
GCAGGGTTAACGTCTCAAAA+CGG | 0.509035 | 1.3:-47922714 | MS.gene073853:CDS |
TGAGGCTATTAAAGTTAAAG+AGG | 0.509176 | 1.3:-47918939 | MS.gene073853:CDS |
CTCCTGAGAAGCCTGCAGAC+AGG | 0.509679 | 1.3:-47923275 | MS.gene073853:CDS |
AATCACTTCACGAAAATTGT+CGG | 0.513242 | 1.3:+47925740 | None:intergenic |
TTCTGAGCTCCAAGATGCAC+GGG | 0.513678 | 1.3:-47923102 | MS.gene073853:CDS |
CTGTCCAAATGCTGTTCCAC+AGG | 0.513830 | 1.3:+47915520 | None:intergenic |
ATTCACTGAATCAGCATTGG+AGG | 0.514943 | 1.3:+47923308 | None:intergenic |
CCAAATGCTGTTCCACAGGC+AGG | 0.515641 | 1.3:+47915524 | None:intergenic |
GTTCAGCACATTTGTTTGCA+AGG | 0.516708 | 1.3:+47921077 | None:intergenic |
ATTGGACAGATATAAATCAT+TGG | 0.516869 | 1.3:-47922846 | MS.gene073853:CDS |
AGATGTGGAAGCTTGTGAAA+AGG | 0.521111 | 1.3:-47917606 | MS.gene073853:CDS |
CAAAGCCGAGTTTCGTGTGA+TGG | 0.522522 | 1.3:-47922435 | MS.gene073853:CDS |
CTGTTGAAGTTGATCAGCTA+AGG | 0.522647 | 1.3:+47917956 | None:intergenic |
CATATGTATTATACCTTCTG+TGG | 0.523609 | 1.3:+47925961 | None:intergenic |
AAAAGGAATTGGACAGTGAA+AGG | 0.524187 | 1.3:-47917589 | MS.gene073853:intron |
CTCAATTGAATGCTTCAACT+CGG | 0.529213 | 1.3:+47923239 | None:intergenic |
CACGGAGATTTATCCACAGA+AGG | 0.529280 | 1.3:-47925974 | MS.gene073853:intron |
AGTCAGTCTGAAAATGCAAA+AGG | 0.532068 | 1.3:-47923352 | MS.gene073853:CDS |
AATGAAGTCTACAAAAGCAT+TGG | 0.533686 | 1.3:-47921044 | MS.gene073853:intron |
TTTGCGTCGGTTATCTACTA+GGG | 0.536181 | 1.3:-47926068 | MS.gene073853:CDS |
AATCAACCAACACTGGGATC+AGG | 0.540393 | 1.3:-47926490 | MS.gene073853:intron |
TAATTGCAATCAACCAACAC+TGG | 0.541368 | 1.3:-47926497 | MS.gene073853:CDS |
TTTGCTGTTAGGAGAATGGT+TGG | 0.546271 | 1.3:+47927478 | None:intergenic |
AATGGGGATGATGGACGAGC+AGG | 0.546445 | 1.3:-47922393 | MS.gene073853:CDS |
GCATTCAATTGAGGAAGCCA+AGG | 0.546475 | 1.3:-47923229 | MS.gene073853:intron |
AGGAGAGCTTGACGAGATTG+TGG | 0.546788 | 1.3:-47923403 | MS.gene073853:CDS |
ATGCAAAAGGATGCAGCTAT+GGG | 0.546927 | 1.3:-47923339 | MS.gene073853:CDS |
TGAAGCCATCACACGAAACT+CGG | 0.548398 | 1.3:+47922430 | None:intergenic |
TAGATAACCGACGCAAAGCA+AGG | 0.550352 | 1.3:+47926074 | None:intergenic |
ATCATTGGCAGAGTCTCTGC+AGG | 0.554470 | 1.3:-47922831 | MS.gene073853:intron |
GAAACAGGAGTGAGAAGATG+AGG | 0.556873 | 1.3:+47927524 | None:intergenic |
AAGCCTGCAGACAGGGCCAT+GGG | 0.559995 | 1.3:-47923267 | MS.gene073853:CDS |
CCAACATCTGTTGCAGCAAG+TGG | 0.560620 | 1.3:-47918736 | MS.gene073853:CDS |
GAAGCCTGCAGACAGGGCCA+TGG | 0.560728 | 1.3:-47923268 | MS.gene073853:CDS |
CTCGGGGTACAAGCTGGGAG+AGG | 0.560766 | 1.3:-47926367 | MS.gene073853:CDS |
AGGAAGCCCTTGCTTTGCGT+CGG | 0.560789 | 1.3:-47926081 | MS.gene073853:CDS |
CGAGTTGAAGCATTCAATTG+AGG | 0.561024 | 1.3:-47923238 | MS.gene073853:CDS |
TGATCAGATGGAAAGAATTG+AGG | 0.561074 | 1.3:-47926014 | MS.gene073853:CDS |
TATTAAAGTTAAAGAGGCTG+AGG | 0.563348 | 1.3:-47918933 | MS.gene073853:CDS |
GAGGGATGACTATAATATCA+AGG | 0.565391 | 1.3:-47918709 | MS.gene073853:intron |
TGGACGAGCAGGTGAAGCGA+TGG | 0.565581 | 1.3:-47922382 | MS.gene073853:CDS |
TCCATAACAATTCTGACTCT+AGG | 0.568748 | 1.3:-47922642 | MS.gene073853:CDS |
CATCCGGATGACACGAAGGA+AGG | 0.572324 | 1.3:+47926179 | None:intergenic |
CTGAAGCTGCTTGTGAACAA+AGG | 0.572664 | 1.3:-47919728 | MS.gene073853:CDS |
TAACGTCTCAAAACGGGAGA+AGG | 0.575407 | 1.3:-47922707 | MS.gene073853:CDS |
GGAATTGGCTGATGCTGAGA+AGG | 0.575750 | 1.3:-47917690 | MS.gene073853:CDS |
TGAGATTACTAATTATGTTG+AGG | 0.578428 | 1.3:-47926101 | MS.gene073853:CDS |
CCACTTGCTGCAACAGATGT+TGG | 0.580687 | 1.3:+47918736 | None:intergenic |
TCTTGAAATTACGATGGAAG+AGG | 0.580999 | 1.3:-47922569 | MS.gene073853:CDS |
TTTCTGAGCTCCAAGATGCA+CGG | 0.582913 | 1.3:-47923103 | MS.gene073853:CDS |
AGATACCGTTGATGATCAGA+TGG | 0.584592 | 1.3:-47926026 | MS.gene073853:CDS |
TCACTAAGAGCAACATTGAG+TGG | 0.584786 | 1.3:-47922314 | MS.gene073853:CDS |
GAATAACCTGATCCCAGTGT+TGG | 0.585715 | 1.3:+47926484 | None:intergenic |
AACCTATATATCTGAAATCG+AGG | 0.589196 | 1.3:-47918906 | MS.gene073853:intron |
AGCATCAGCCAATTCCCACC+TGG | 0.596588 | 1.3:+47917697 | None:intergenic |
ATCCGGATGACACGAAGGAA+GGG | 0.598223 | 1.3:+47926180 | None:intergenic |
CAGCTTTATCTAAAGAAATG+GGG | 0.599897 | 1.3:-47922409 | MS.gene073853:CDS |
TCTTTCCATCTGATCATCAA+CGG | 0.601325 | 1.3:+47926021 | None:intergenic |
CGACCAAATTCAGAAAGATG+TGG | 0.602428 | 1.3:-47917621 | MS.gene073853:CDS |
ATTGCTGAGCTGAATTCTGA+AGG | 0.603898 | 1.3:-47916615 | MS.gene073853:CDS |
AGATAACCGACGCAAAGCAA+GGG | 0.606298 | 1.3:+47926075 | None:intergenic |
CACCGCAAATGTCCTGCCTG+TGG | 0.609399 | 1.3:-47915536 | MS.gene073853:CDS |
AAACACAAGGAGTATACTGT+TGG | 0.609461 | 1.3:-47925702 | MS.gene073853:CDS |
CTGTTCTGACCGTCCAAAGG+AGG | 0.610575 | 1.3:-47916523 | MS.gene073853:intron |
CAGAAGTTAGAGAATCTGAA+AGG | 0.612893 | 1.3:-47919833 | MS.gene073853:CDS |
TCTTGTTGTTGGGTTCGTCG+TGG | 0.614659 | 1.3:+47927549 | None:intergenic |
AAGAGCAACATTGAGTGGAA+AGG | 0.617926 | 1.3:-47922309 | MS.gene073853:intron |
TGATGATATGGCTCTTCTCG+GGG | 0.619933 | 1.3:-47926383 | MS.gene073853:CDS |
GTTGCAGCAAGTGGCTGAGA+GGG | 0.621288 | 1.3:-47918727 | MS.gene073853:CDS |
TGGAGTCTGCTGTTAATGCA+AGG | 0.625436 | 1.3:-47922669 | MS.gene073853:CDS |
TGTCTGTTCTGACCGTCCAA+AGG | 0.626715 | 1.3:-47916526 | MS.gene073853:CDS |
TGCTGCAGAAGCTGAACTAG+AGG | 0.629556 | 1.3:-47919700 | MS.gene073853:CDS |
AATTGCAATCAACCAACACT+GGG | 0.631357 | 1.3:-47926496 | MS.gene073853:CDS |
GAGTTCACGGAAGAAGCTTG+AGG | 0.633563 | 1.3:-47916664 | MS.gene073853:CDS |
AAGTACCTTGTGGATTATCG+AGG | 0.633911 | 1.3:+47926317 | None:intergenic |
TGTTGCAGCAAGTGGCTGAG+AGG | 0.640275 | 1.3:-47918728 | MS.gene073853:CDS |
CTTCAACTCGGACAAACCCA+TGG | 0.641274 | 1.3:+47923251 | None:intergenic |
GAATGATCTTGAAATTACGA+TGG | 0.643737 | 1.3:-47922575 | MS.gene073853:CDS |
GGTTGAATTTGGTGAAACGC+GGG | 0.644185 | 1.3:+47927499 | None:intergenic |
ACAGATTGAAAAGTTACAGG+AGG | 0.653733 | 1.3:-47920685 | MS.gene073853:intron |
AGATCATCCGGATGACACGA+AGG | 0.657010 | 1.3:+47926175 | None:intergenic |
TACTCTCCATGCAAAACACA+AGG | 0.662712 | 1.3:-47925715 | MS.gene073853:CDS |
GCTTGTATCAGAAAGCGTGA+AGG | 0.670954 | 1.3:-47918018 | MS.gene073853:CDS |
ATTTGCCAAAGAGTATACTC+GGG | 0.676867 | 1.3:+47922895 | None:intergenic |
CAAACTCTAAGGCGGCTGCG+AGG | 0.683577 | 1.3:+47917720 | None:intergenic |
CCGCCTTAGAGTTTGCCAGG+TGG | 0.688256 | 1.3:-47917712 | MS.gene073853:CDS |
TGGTTGAATTTGGTGAAACG+CGG | 0.705123 | 1.3:+47927498 | None:intergenic |
CCACCTGGCAAACTCTAAGG+CGG | 0.716860 | 1.3:+47917712 | None:intergenic |
GATTACCTCGATAATCCACA+AGG | 0.721386 | 1.3:-47926322 | MS.gene073853:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 47915493 | 47927585 | 47915493 | ID=MS.gene073853 |
chr1.3 | mRNA | 47915493 | 47927585 | 47915493 | ID=MS.gene073853.t1;Parent=MS.gene073853 |
chr1.3 | exon | 47927475 | 47927585 | 47927475 | ID=MS.gene073853.t1.exon1;Parent=MS.gene073853.t1 |
chr1.3 | CDS | 47927475 | 47927585 | 47927475 | ID=cds.MS.gene073853.t1;Parent=MS.gene073853.t1 |
chr1.3 | exon | 47926491 | 47926652 | 47926491 | ID=MS.gene073853.t1.exon2;Parent=MS.gene073853.t1 |
chr1.3 | CDS | 47926491 | 47926652 | 47926491 | ID=cds.MS.gene073853.t1;Parent=MS.gene073853.t1 |
chr1.3 | exon | 47926323 | 47926410 | 47926323 | ID=MS.gene073853.t1.exon3;Parent=MS.gene073853.t1 |
chr1.3 | CDS | 47926323 | 47926410 | 47926323 | ID=cds.MS.gene073853.t1;Parent=MS.gene073853.t1 |
chr1.3 | exon | 47925975 | 47926205 | 47925975 | ID=MS.gene073853.t1.exon4;Parent=MS.gene073853.t1 |
chr1.3 | CDS | 47925975 | 47926205 | 47925975 | ID=cds.MS.gene073853.t1;Parent=MS.gene073853.t1 |
chr1.3 | exon | 47925643 | 47925810 | 47925643 | ID=MS.gene073853.t1.exon5;Parent=MS.gene073853.t1 |
chr1.3 | CDS | 47925643 | 47925810 | 47925643 | ID=cds.MS.gene073853.t1;Parent=MS.gene073853.t1 |
chr1.3 | exon | 47923230 | 47923423 | 47923230 | ID=MS.gene073853.t1.exon6;Parent=MS.gene073853.t1 |
chr1.3 | CDS | 47923230 | 47923423 | 47923230 | ID=cds.MS.gene073853.t1;Parent=MS.gene073853.t1 |
chr1.3 | exon | 47923061 | 47923144 | 47923061 | ID=MS.gene073853.t1.exon7;Parent=MS.gene073853.t1 |
chr1.3 | CDS | 47923061 | 47923144 | 47923061 | ID=cds.MS.gene073853.t1;Parent=MS.gene073853.t1 |
chr1.3 | exon | 47922832 | 47922951 | 47922832 | ID=MS.gene073853.t1.exon8;Parent=MS.gene073853.t1 |
chr1.3 | CDS | 47922832 | 47922951 | 47922832 | ID=cds.MS.gene073853.t1;Parent=MS.gene073853.t1 |
chr1.3 | exon | 47922554 | 47922740 | 47922554 | ID=MS.gene073853.t1.exon9;Parent=MS.gene073853.t1 |
chr1.3 | CDS | 47922554 | 47922740 | 47922554 | ID=cds.MS.gene073853.t1;Parent=MS.gene073853.t1 |
chr1.3 | exon | 47922310 | 47922470 | 47922310 | ID=MS.gene073853.t1.exon10;Parent=MS.gene073853.t1 |
chr1.3 | CDS | 47922310 | 47922470 | 47922310 | ID=cds.MS.gene073853.t1;Parent=MS.gene073853.t1 |
chr1.3 | exon | 47921045 | 47921116 | 47921045 | ID=MS.gene073853.t1.exon11;Parent=MS.gene073853.t1 |
chr1.3 | CDS | 47921045 | 47921116 | 47921045 | ID=cds.MS.gene073853.t1;Parent=MS.gene073853.t1 |
chr1.3 | exon | 47920627 | 47920703 | 47920627 | ID=MS.gene073853.t1.exon12;Parent=MS.gene073853.t1 |
chr1.3 | CDS | 47920627 | 47920703 | 47920627 | ID=cds.MS.gene073853.t1;Parent=MS.gene073853.t1 |
chr1.3 | exon | 47919669 | 47919860 | 47919669 | ID=MS.gene073853.t1.exon13;Parent=MS.gene073853.t1 |
chr1.3 | CDS | 47919669 | 47919860 | 47919669 | ID=cds.MS.gene073853.t1;Parent=MS.gene073853.t1 |
chr1.3 | exon | 47918907 | 47918979 | 47918907 | ID=MS.gene073853.t1.exon14;Parent=MS.gene073853.t1 |
chr1.3 | CDS | 47918907 | 47918979 | 47918907 | ID=cds.MS.gene073853.t1;Parent=MS.gene073853.t1 |
chr1.3 | exon | 47918710 | 47918796 | 47918710 | ID=MS.gene073853.t1.exon15;Parent=MS.gene073853.t1 |
chr1.3 | CDS | 47918710 | 47918796 | 47918710 | ID=cds.MS.gene073853.t1;Parent=MS.gene073853.t1 |
chr1.3 | exon | 47917902 | 47918039 | 47917902 | ID=MS.gene073853.t1.exon16;Parent=MS.gene073853.t1 |
chr1.3 | CDS | 47917902 | 47918039 | 47917902 | ID=cds.MS.gene073853.t1;Parent=MS.gene073853.t1 |
chr1.3 | exon | 47917590 | 47917792 | 47917590 | ID=MS.gene073853.t1.exon17;Parent=MS.gene073853.t1 |
chr1.3 | CDS | 47917590 | 47917792 | 47917590 | ID=cds.MS.gene073853.t1;Parent=MS.gene073853.t1 |
chr1.3 | exon | 47916524 | 47916686 | 47916524 | ID=MS.gene073853.t1.exon18;Parent=MS.gene073853.t1 |
chr1.3 | CDS | 47916524 | 47916686 | 47916524 | ID=cds.MS.gene073853.t1;Parent=MS.gene073853.t1 |
chr1.3 | exon | 47915493 | 47915624 | 47915493 | ID=MS.gene073853.t1.exon19;Parent=MS.gene073853.t1 |
chr1.3 | CDS | 47915493 | 47915624 | 47915493 | ID=cds.MS.gene073853.t1;Parent=MS.gene073853.t1 |
Gene Sequence |
Protein sequence |