Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68333.t1 | XP_003613304.1 | 96.3 | 272 | 10 | 0 | 1 | 272 | 162 | 433 | 1.60E-158 | 568.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68333.t1 | O04523 | 47.9 | 267 | 116 | 8 | 1 | 262 | 166 | 414 | 5.1e-68 | 259.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68333.t1 | G7K2T6 | 96.3 | 272 | 10 | 0 | 1 | 272 | 162 | 433 | 1.2e-158 | 568.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049159 | MS.gene68333 | 0.803255 | 3.80E-49 | -1.69E-46 |
MS.gene049254 | MS.gene68333 | 0.822187 | 2.71E-53 | -1.69E-46 |
MS.gene049404 | MS.gene68333 | 0.803724 | 3.04E-49 | -1.69E-46 |
MS.gene049435 | MS.gene68333 | 0.828661 | 7.94E-55 | -1.69E-46 |
MS.gene049452 | MS.gene68333 | 0.802985 | 4.33E-49 | -1.69E-46 |
MS.gene049669 | MS.gene68333 | 0.809314 | 2.01E-50 | -1.69E-46 |
MS.gene050026 | MS.gene68333 | 0.828196 | 1.03E-54 | -1.69E-46 |
MS.gene050029 | MS.gene68333 | 0.812334 | 4.47E-51 | -1.69E-46 |
MS.gene050227 | MS.gene68333 | 0.803203 | 3.90E-49 | -1.69E-46 |
MS.gene050228 | MS.gene68333 | 0.807135 | 5.86E-50 | -1.69E-46 |
MS.gene050355 | MS.gene68333 | 0.811676 | 6.21E-51 | -1.69E-46 |
MS.gene050442 | MS.gene68333 | 0.840036 | 1.11E-57 | -1.69E-46 |
MS.gene050605 | MS.gene68333 | 0.801087 | 1.06E-48 | -1.69E-46 |
MS.gene050680 | MS.gene68333 | 0.860418 | 2.09E-63 | -1.69E-46 |
MS.gene050750 | MS.gene68333 | 0.872832 | 2.35E-67 | -1.69E-46 |
MS.gene050787 | MS.gene68333 | 0.829037 | 6.44E-55 | -1.69E-46 |
MS.gene050820 | MS.gene68333 | 0.836214 | 1.07E-56 | -1.69E-46 |
MS.gene050826 | MS.gene68333 | 0.814738 | 1.32E-51 | -1.69E-46 |
MS.gene050953 | MS.gene68333 | 0.855384 | 6.54E-62 | -1.69E-46 |
MS.gene051198 | MS.gene68333 | 0.813384 | 2.63E-51 | -1.69E-46 |
MS.gene051265 | MS.gene68333 | 0.823407 | 1.41E-53 | -1.69E-46 |
MS.gene051594 | MS.gene68333 | 0.802867 | 4.58E-49 | -1.69E-46 |
MS.gene051924 | MS.gene68333 | -0.85033 | 1.82E-60 | -1.69E-46 |
MS.gene051926 | MS.gene68333 | -0.843343 | 1.49E-58 | -1.69E-46 |
MS.gene052176 | MS.gene68333 | 0.815421 | 9.33E-52 | -1.69E-46 |
MS.gene052190 | MS.gene68333 | 0.87896 | 1.84E-69 | -1.69E-46 |
MS.gene052208 | MS.gene68333 | 0.817443 | 3.29E-52 | -1.69E-46 |
MS.gene052333 | MS.gene68333 | 0.87387 | 1.05E-67 | -1.69E-46 |
MS.gene052358 | MS.gene68333 | -0.812561 | 3.98E-51 | -1.69E-46 |
MS.gene052361 | MS.gene68333 | -0.803762 | 2.99E-49 | -1.69E-46 |
MS.gene052488 | MS.gene68333 | 0.800253 | 1.57E-48 | -1.69E-46 |
MS.gene052519 | MS.gene68333 | 0.844319 | 8.14E-59 | -1.69E-46 |
MS.gene052582 | MS.gene68333 | 0.807594 | 4.68E-50 | -1.69E-46 |
MS.gene052584 | MS.gene68333 | 0.802199 | 6.28E-49 | -1.69E-46 |
MS.gene052586 | MS.gene68333 | 0.810347 | 1.21E-50 | -1.69E-46 |
MS.gene052674 | MS.gene68333 | 0.801054 | 1.08E-48 | -1.69E-46 |
MS.gene052675 | MS.gene68333 | 0.801591 | 8.38E-49 | -1.69E-46 |
MS.gene052677 | MS.gene68333 | 0.811285 | 7.56E-51 | -1.69E-46 |
MS.gene052863 | MS.gene68333 | 0.822594 | 2.18E-53 | -1.69E-46 |
MS.gene052867 | MS.gene68333 | 0.826621 | 2.45E-54 | -1.69E-46 |
MS.gene052965 | MS.gene68333 | -0.804989 | 1.66E-49 | -1.69E-46 |
MS.gene053166 | MS.gene68333 | 0.89251 | 1.49E-74 | -1.69E-46 |
MS.gene053201 | MS.gene68333 | 0.841717 | 4.01E-58 | -1.69E-46 |
MS.gene053202 | MS.gene68333 | 0.803213 | 3.88E-49 | -1.69E-46 |
MS.gene053221 | MS.gene68333 | 0.80533 | 1.41E-49 | -1.69E-46 |
MS.gene053584 | MS.gene68333 | 0.825488 | 4.56E-54 | -1.69E-46 |
MS.gene053966 | MS.gene68333 | 0.803547 | 3.31E-49 | -1.69E-46 |
MS.gene053974 | MS.gene68333 | 0.805494 | 1.30E-49 | -1.69E-46 |
MS.gene05414 | MS.gene68333 | 0.830302 | 3.17E-55 | -1.69E-46 |
MS.gene05415 | MS.gene68333 | 0.870112 | 1.87E-66 | -1.69E-46 |
MS.gene054236 | MS.gene68333 | 0.839784 | 1.29E-57 | -1.69E-46 |
MS.gene054291 | MS.gene68333 | -0.880313 | 6.08E-70 | -1.69E-46 |
MS.gene054405 | MS.gene68333 | 0.857671 | 1.39E-62 | -1.69E-46 |
MS.gene054467 | MS.gene68333 | 0.846449 | 2.16E-59 | -1.69E-46 |
MS.gene054468 | MS.gene68333 | 0.865535 | 5.50E-65 | -1.69E-46 |
MS.gene054559 | MS.gene68333 | 0.880851 | 3.90E-70 | -1.69E-46 |
MS.gene054610 | MS.gene68333 | 0.804756 | 1.85E-49 | -1.69E-46 |
MS.gene054651 | MS.gene68333 | 0.812006 | 5.27E-51 | -1.69E-46 |
MS.gene054775 | MS.gene68333 | 0.816575 | 5.15E-52 | -1.69E-46 |
MS.gene05510 | MS.gene68333 | 0.821232 | 4.50E-53 | -1.69E-46 |
MS.gene055166 | MS.gene68333 | 0.804902 | 1.73E-49 | -1.69E-46 |
MS.gene055227 | MS.gene68333 | 0.820144 | 8.01E-53 | -1.69E-46 |
MS.gene055228 | MS.gene68333 | 0.813479 | 2.51E-51 | -1.69E-46 |
MS.gene055356 | MS.gene68333 | 0.8482 | 7.13E-60 | -1.69E-46 |
MS.gene055357 | MS.gene68333 | 0.819277 | 1.26E-52 | -1.69E-46 |
MS.gene055358 | MS.gene68333 | 0.836066 | 1.16E-56 | -1.69E-46 |
MS.gene055367 | MS.gene68333 | 0.809821 | 1.57E-50 | -1.69E-46 |
MS.gene055701 | MS.gene68333 | 0.873182 | 1.79E-67 | -1.69E-46 |
MS.gene055818 | MS.gene68333 | 0.844766 | 6.17E-59 | -1.69E-46 |
MS.gene055926 | MS.gene68333 | 0.820923 | 5.31E-53 | -1.69E-46 |
MS.gene05595 | MS.gene68333 | 0.808073 | 3.70E-50 | -1.69E-46 |
MS.gene05604 | MS.gene68333 | 0.830739 | 2.48E-55 | -1.69E-46 |
MS.gene056173 | MS.gene68333 | 0.812725 | 3.67E-51 | -1.69E-46 |
MS.gene056498 | MS.gene68333 | 0.810685 | 1.02E-50 | -1.69E-46 |
MS.gene056506 | MS.gene68333 | 0.872306 | 3.52E-67 | -1.69E-46 |
MS.gene056779 | MS.gene68333 | 0.818426 | 1.97E-52 | -1.69E-46 |
MS.gene056952 | MS.gene68333 | 0.800865 | 1.18E-48 | -1.69E-46 |
MS.gene057021 | MS.gene68333 | 0.813214 | 2.87E-51 | -1.69E-46 |
MS.gene057026 | MS.gene68333 | 0.873236 | 1.72E-67 | -1.69E-46 |
MS.gene057060 | MS.gene68333 | 0.844388 | 7.80E-59 | -1.69E-46 |
MS.gene057156 | MS.gene68333 | -0.804584 | 2.01E-49 | -1.69E-46 |
MS.gene057194 | MS.gene68333 | 0.805731 | 1.16E-49 | -1.69E-46 |
MS.gene057414 | MS.gene68333 | 0.823071 | 1.69E-53 | -1.69E-46 |
MS.gene057444 | MS.gene68333 | 0.820802 | 5.66E-53 | -1.69E-46 |
MS.gene05761 | MS.gene68333 | 0.806714 | 7.19E-50 | -1.69E-46 |
MS.gene058037 | MS.gene68333 | 0.806976 | 6.33E-50 | -1.69E-46 |
MS.gene058625 | MS.gene68333 | 0.839815 | 1.26E-57 | -1.69E-46 |
MS.gene058979 | MS.gene68333 | 0.842773 | 2.11E-58 | -1.69E-46 |
MS.gene059128 | MS.gene68333 | 0.825489 | 4.56E-54 | -1.69E-46 |
MS.gene059161 | MS.gene68333 | 0.821203 | 4.58E-53 | -1.69E-46 |
MS.gene059272 | MS.gene68333 | 0.84764 | 1.02E-59 | -1.69E-46 |
MS.gene05954 | MS.gene68333 | 0.807328 | 5.33E-50 | -1.69E-46 |
MS.gene059584 | MS.gene68333 | 0.820236 | 7.63E-53 | -1.69E-46 |
MS.gene059609 | MS.gene68333 | 0.824458 | 7.99E-54 | -1.69E-46 |
MS.gene059789 | MS.gene68333 | 0.809051 | 2.29E-50 | -1.69E-46 |
MS.gene060011 | MS.gene68333 | 0.841984 | 3.41E-58 | -1.69E-46 |
MS.gene060137 | MS.gene68333 | -0.842776 | 2.10E-58 | -1.69E-46 |
MS.gene060310 | MS.gene68333 | 0.810088 | 1.37E-50 | -1.69E-46 |
MS.gene060322 | MS.gene68333 | 0.874906 | 4.68E-68 | -1.69E-46 |
MS.gene060521 | MS.gene68333 | 0.801684 | 8.02E-49 | -1.69E-46 |
MS.gene06052 | MS.gene68333 | 0.806372 | 8.49E-50 | -1.69E-46 |
MS.gene060553 | MS.gene68333 | 0.815548 | 8.74E-52 | -1.69E-46 |
MS.gene060572 | MS.gene68333 | 0.824917 | 6.22E-54 | -1.69E-46 |
MS.gene060634 | MS.gene68333 | -0.809866 | 1.53E-50 | -1.69E-46 |
MS.gene060683 | MS.gene68333 | 0.816851 | 4.47E-52 | -1.69E-46 |
MS.gene060685 | MS.gene68333 | 0.820793 | 5.69E-53 | -1.69E-46 |
MS.gene060802 | MS.gene68333 | 0.813967 | 1.96E-51 | -1.69E-46 |
MS.gene060803 | MS.gene68333 | 0.800792 | 1.22E-48 | -1.69E-46 |
MS.gene060843 | MS.gene68333 | 0.806902 | 6.57E-50 | -1.69E-46 |
MS.gene060879 | MS.gene68333 | 0.803399 | 3.55E-49 | -1.69E-46 |
MS.gene061040 | MS.gene68333 | -0.853674 | 2.04E-61 | -1.69E-46 |
MS.gene061114 | MS.gene68333 | -0.863211 | 2.93E-64 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68333.t1 | MTR_5g035080 | 96.324 | 272 | 10 | 0 | 1 | 272 | 162 | 433 | 0.0 | 551 |
MS.gene68333.t1 | MTR_5g035140 | 68.702 | 262 | 80 | 2 | 1 | 261 | 7 | 267 | 4.15e-139 | 392 |
MS.gene68333.t1 | MTR_5g035150 | 71.910 | 267 | 68 | 3 | 1 | 263 | 172 | 435 | 3.28e-136 | 391 |
MS.gene68333.t1 | MTR_3g109840 | 68.966 | 261 | 79 | 2 | 1 | 261 | 159 | 417 | 4.44e-132 | 380 |
MS.gene68333.t1 | MTR_8g104970 | 67.433 | 261 | 83 | 2 | 1 | 260 | 207 | 466 | 3.50e-131 | 380 |
MS.gene68333.t1 | MTR_5g035070 | 66.929 | 254 | 79 | 3 | 19 | 272 | 196 | 444 | 1.90e-121 | 354 |
MS.gene68333.t1 | MTR_7g033230 | 64.122 | 262 | 92 | 2 | 1 | 261 | 351 | 611 | 1.44e-120 | 357 |
MS.gene68333.t1 | MTR_7g033230 | 64.122 | 262 | 92 | 2 | 1 | 261 | 421 | 681 | 1.13e-119 | 357 |
MS.gene68333.t1 | MTR_5g035090 | 63.670 | 267 | 88 | 4 | 1 | 263 | 170 | 431 | 4.89e-119 | 348 |
MS.gene68333.t1 | MTR_8g099300 | 40.602 | 266 | 142 | 8 | 2 | 259 | 162 | 419 | 1.55e-58 | 192 |
MS.gene68333.t1 | MTR_6g016880 | 36.330 | 267 | 152 | 9 | 1 | 260 | 165 | 420 | 2.77e-54 | 181 |
MS.gene68333.t1 | MTR_8g027900 | 36.842 | 266 | 153 | 7 | 1 | 259 | 298 | 555 | 1.84e-52 | 179 |
MS.gene68333.t1 | MTR_6g016875 | 36.704 | 267 | 146 | 10 | 5 | 260 | 155 | 409 | 2.32e-52 | 176 |
MS.gene68333.t1 | MTR_7g019120 | 34.082 | 267 | 158 | 9 | 1 | 260 | 166 | 421 | 2.99e-47 | 163 |
MS.gene68333.t1 | MTR_6g007777 | 35.206 | 267 | 156 | 8 | 1 | 261 | 204 | 459 | 3.53e-47 | 164 |
MS.gene68333.t1 | MTR_2g016060 | 32.852 | 277 | 155 | 12 | 1 | 261 | 141 | 402 | 4.14e-43 | 151 |
MS.gene68333.t1 | MTR_1g076690 | 29.670 | 273 | 170 | 10 | 1 | 261 | 310 | 572 | 2.39e-28 | 114 |
MS.gene68333.t1 | MTR_6g061710 | 29.562 | 274 | 169 | 11 | 1 | 261 | 254 | 516 | 8.55e-26 | 106 |
MS.gene68333.t1 | MTR_7g117160 | 34.194 | 155 | 67 | 5 | 104 | 258 | 70 | 189 | 1.36e-19 | 84.3 |
MS.gene68333.t1 | MTR_0136s0010 | 29.771 | 262 | 149 | 13 | 11 | 261 | 275 | 512 | 1.39e-19 | 88.6 |
MS.gene68333.t1 | MTR_8g069790 | 27.407 | 270 | 155 | 12 | 5 | 262 | 279 | 519 | 3.76e-19 | 87.0 |
MS.gene68333.t1 | MTR_7g094750 | 29.167 | 264 | 143 | 16 | 13 | 261 | 200 | 434 | 4.94e-19 | 86.7 |
MS.gene68333.t1 | MTR_1g058380 | 26.923 | 260 | 151 | 13 | 13 | 261 | 166 | 397 | 3.66e-18 | 84.0 |
MS.gene68333.t1 | MTR_2g022560 | 28.740 | 254 | 160 | 9 | 13 | 263 | 206 | 441 | 4.52e-18 | 83.6 |
MS.gene68333.t1 | MTR_4g125060 | 26.423 | 246 | 149 | 8 | 19 | 259 | 321 | 539 | 8.90e-18 | 83.2 |
MS.gene68333.t1 | MTR_4g125060 | 26.423 | 246 | 149 | 8 | 19 | 259 | 253 | 471 | 9.61e-18 | 82.8 |
MS.gene68333.t1 | MTR_4g125060 | 26.423 | 246 | 149 | 8 | 19 | 259 | 292 | 510 | 1.12e-17 | 82.8 |
MS.gene68333.t1 | MTR_5g059400 | 27.675 | 271 | 151 | 15 | 16 | 270 | 287 | 528 | 6.63e-17 | 80.5 |
MS.gene68333.t1 | MTR_1g116130 | 27.675 | 271 | 151 | 15 | 16 | 270 | 287 | 528 | 6.63e-17 | 80.5 |
MS.gene68333.t1 | MTR_7g093450 | 28.571 | 273 | 158 | 13 | 11 | 270 | 353 | 601 | 1.08e-16 | 80.1 |
MS.gene68333.t1 | MTR_5g033800 | 27.059 | 255 | 155 | 10 | 14 | 261 | 255 | 485 | 4.09e-16 | 78.2 |
MS.gene68333.t1 | MTR_8g093530 | 29.218 | 243 | 135 | 12 | 21 | 259 | 207 | 416 | 8.51e-16 | 77.0 |
MS.gene68333.t1 | MTR_6g016240 | 34.711 | 121 | 65 | 5 | 141 | 259 | 308 | 416 | 2.08e-15 | 75.9 |
MS.gene68333.t1 | MTR_4g016940 | 27.490 | 251 | 144 | 12 | 24 | 259 | 200 | 427 | 9.42e-15 | 73.9 |
MS.gene68333.t1 | MTR_8g093870 | 23.622 | 254 | 146 | 9 | 19 | 259 | 254 | 472 | 3.09e-14 | 72.4 |
MS.gene68333.t1 | MTR_4g121560 | 25.746 | 268 | 162 | 10 | 2 | 259 | 213 | 453 | 3.42e-14 | 72.4 |
MS.gene68333.t1 | MTR_3g464570 | 26.190 | 252 | 147 | 10 | 20 | 259 | 48 | 272 | 4.57e-13 | 67.8 |
MS.gene68333.t1 | MTR_7g019130 | 31.818 | 132 | 78 | 6 | 28 | 154 | 1 | 125 | 7.16e-13 | 65.1 |
MS.gene68333.t1 | MTR_7g109550 | 25.461 | 271 | 156 | 12 | 1 | 256 | 225 | 464 | 8.21e-13 | 68.2 |
MS.gene68333.t1 | MTR_4g102570 | 34.109 | 129 | 70 | 4 | 26 | 148 | 2 | 121 | 9.57e-13 | 65.1 |
MS.gene68333.t1 | MTR_3g464570 | 26.087 | 253 | 148 | 10 | 19 | 259 | 151 | 376 | 1.50e-12 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68333.t1 | AT1G70230 | 47.940 | 267 | 116 | 8 | 1 | 262 | 166 | 414 | 1.40e-80 | 249 |
MS.gene68333.t1 | AT1G01430 | 38.376 | 271 | 146 | 10 | 1 | 259 | 186 | 447 | 3.08e-54 | 182 |
MS.gene68333.t1 | AT4G23790 | 37.313 | 268 | 152 | 9 | 1 | 259 | 167 | 427 | 2.88e-51 | 173 |
MS.gene68333.t1 | AT3G02440 | 36.905 | 252 | 143 | 7 | 19 | 265 | 242 | 482 | 4.83e-51 | 174 |
MS.gene68333.t1 | AT3G02440 | 36.905 | 252 | 143 | 7 | 19 | 265 | 234 | 474 | 4.86e-51 | 174 |
MS.gene68333.t1 | AT4G01080 | 36.882 | 263 | 148 | 9 | 1 | 257 | 178 | 428 | 4.98e-51 | 173 |
MS.gene68333.t1 | AT5G15890 | 39.024 | 246 | 129 | 9 | 19 | 260 | 295 | 523 | 6.63e-51 | 174 |
MS.gene68333.t1 | AT4G11090 | 37.218 | 266 | 153 | 8 | 1 | 259 | 167 | 425 | 6.66e-49 | 167 |
MS.gene68333.t1 | AT5G15900 | 34.432 | 273 | 160 | 10 | 1 | 266 | 156 | 416 | 5.01e-47 | 162 |
MS.gene68333.t1 | AT5G15900 | 34.432 | 273 | 160 | 10 | 1 | 266 | 175 | 435 | 6.40e-47 | 162 |
MS.gene68333.t1 | AT3G28150 | 32.836 | 268 | 161 | 9 | 1 | 261 | 157 | 412 | 4.82e-42 | 149 |
MS.gene68333.t1 | AT4G25360 | 28.261 | 276 | 172 | 9 | 1 | 261 | 262 | 526 | 7.30e-26 | 106 |
MS.gene68333.t1 | AT4G25360 | 28.261 | 276 | 172 | 9 | 1 | 261 | 262 | 526 | 7.30e-26 | 106 |
MS.gene68333.t1 | AT5G51640 | 27.723 | 303 | 157 | 13 | 1 | 270 | 225 | 498 | 1.30e-24 | 102 |
MS.gene68333.t1 | AT3G11570 | 28.030 | 264 | 154 | 11 | 13 | 267 | 191 | 427 | 1.43e-21 | 93.6 |
MS.gene68333.t1 | AT5G19160 | 27.586 | 261 | 173 | 8 | 13 | 270 | 208 | 455 | 5.62e-21 | 92.4 |
MS.gene68333.t1 | AT5G64020 | 27.778 | 252 | 150 | 10 | 19 | 259 | 178 | 408 | 1.13e-19 | 88.2 |
MS.gene68333.t1 | AT3G06080 | 27.481 | 262 | 151 | 11 | 13 | 261 | 212 | 447 | 1.75e-19 | 87.8 |
MS.gene68333.t1 | AT5G06700 | 29.231 | 260 | 147 | 13 | 21 | 269 | 372 | 605 | 1.90e-18 | 85.1 |
MS.gene68333.t1 | AT2G14530 | 26.415 | 265 | 138 | 11 | 21 | 259 | 173 | 406 | 2.41e-18 | 84.3 |
MS.gene68333.t1 | AT3G12060 | 29.231 | 260 | 147 | 13 | 21 | 269 | 313 | 546 | 6.22e-18 | 83.6 |
MS.gene68333.t1 | AT5G20680 | 25.591 | 254 | 141 | 8 | 19 | 259 | 333 | 551 | 1.15e-17 | 82.8 |
MS.gene68333.t1 | AT5G20680 | 25.591 | 254 | 141 | 8 | 19 | 259 | 333 | 551 | 1.15e-17 | 82.8 |
MS.gene68333.t1 | AT5G20680 | 25.591 | 254 | 141 | 8 | 19 | 259 | 333 | 551 | 1.15e-17 | 82.8 |
MS.gene68333.t1 | AT5G20680 | 25.591 | 254 | 141 | 8 | 19 | 259 | 333 | 551 | 1.15e-17 | 82.8 |
MS.gene68333.t1 | AT5G20680 | 25.591 | 254 | 141 | 8 | 19 | 259 | 315 | 533 | 1.17e-17 | 82.8 |
MS.gene68333.t1 | AT5G20680 | 25.781 | 256 | 138 | 9 | 19 | 259 | 239 | 457 | 1.34e-17 | 82.4 |
MS.gene68333.t1 | AT5G06230 | 28.516 | 256 | 147 | 11 | 13 | 259 | 136 | 364 | 4.47e-16 | 77.4 |
MS.gene68333.t1 | AT1G48880 | 31.687 | 243 | 129 | 13 | 20 | 259 | 231 | 439 | 6.47e-16 | 77.4 |
MS.gene68333.t1 | AT5G06230 | 27.652 | 264 | 155 | 11 | 13 | 267 | 177 | 413 | 7.66e-16 | 77.0 |
MS.gene68333.t1 | AT5G58600 | 25.403 | 248 | 156 | 8 | 19 | 259 | 175 | 400 | 5.98e-15 | 74.3 |
MS.gene68333.t1 | AT1G60790 | 23.774 | 265 | 170 | 12 | 5 | 260 | 293 | 534 | 4.08e-14 | 72.4 |
MS.gene68333.t1 | AT5G20590 | 26.877 | 253 | 153 | 11 | 14 | 259 | 252 | 479 | 4.36e-14 | 72.0 |
MS.gene68333.t1 | AT2G37720 | 24.345 | 267 | 150 | 7 | 8 | 259 | 253 | 482 | 3.92e-13 | 69.3 |
MS.gene68333.t1 | AT2G30010 | 25.714 | 245 | 154 | 9 | 24 | 259 | 171 | 396 | 8.03e-13 | 68.2 |
MS.gene68333.t1 | AT2G30010 | 26.016 | 246 | 152 | 11 | 24 | 259 | 214 | 439 | 9.51e-13 | 68.2 |
MS.gene68333.t1 | AT2G40160 | 25.498 | 251 | 146 | 13 | 24 | 255 | 191 | 419 | 1.55e-11 | 64.3 |
MS.gene68333.t1 | AT2G40160 | 25.000 | 256 | 151 | 13 | 19 | 255 | 186 | 419 | 1.79e-11 | 64.3 |
MS.gene68333.t1 | AT5G01360 | 27.160 | 243 | 150 | 11 | 24 | 256 | 150 | 375 | 1.81e-11 | 63.9 |
MS.gene68333.t1 | AT2G42570 | 27.027 | 259 | 138 | 14 | 11 | 259 | 147 | 364 | 2.75e-11 | 63.5 |
MS.gene68333.t1 | AT5G64470 | 30.769 | 117 | 69 | 4 | 144 | 259 | 289 | 394 | 3.29e-11 | 63.5 |
MS.gene68333.t1 | AT5G01360 | 27.160 | 243 | 150 | 11 | 24 | 256 | 206 | 431 | 3.57e-11 | 63.5 |
MS.gene68333.t1 | AT3G62390 | 24.101 | 278 | 165 | 14 | 1 | 261 | 226 | 474 | 4.46e-11 | 63.2 |
Find 66 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCCTTAAAGCCTTTCTTAA+TGG | 0.091385 | 5.2:-25592287 | None:intergenic |
TTCCATTAAGAAAGGCTTTA+AGG | 0.121836 | 5.2:+25592285 | MS.gene68333:CDS |
GCCACCAATGTGAACCTTTA+TGG | 0.250930 | 5.2:-25591986 | None:intergenic |
TGCTTAAATTGTTCCGGTTT+CGG | 0.254274 | 5.2:+25592233 | MS.gene68333:CDS |
CCTTTATGGTGGACCGGTTT+AGG | 0.263456 | 5.2:-25591972 | None:intergenic |
GGTCTTAATTACACTGATAT+TGG | 0.285156 | 5.2:+25592254 | MS.gene68333:CDS |
GGAAAGGGTGAGAAGGAAAT+TGG | 0.307402 | 5.2:+25592443 | MS.gene68333:CDS |
TGTGTTCATTGGTGTTTGCC+TGG | 0.324131 | 5.2:+25592665 | MS.gene68333:CDS |
TGTTCAAAGACTGAACCTTA+TGG | 0.369816 | 5.2:+25592422 | MS.gene68333:CDS |
TTAGGATGCTTAAATTGTTC+CGG | 0.372597 | 5.2:+25592227 | MS.gene68333:CDS |
AGATGATGAAGAAGTGGGAT+TGG | 0.380315 | 5.2:+25592720 | MS.gene68333:CDS |
TCATCACCTTGCACAAGAAA+TGG | 0.391236 | 5.2:-25592050 | None:intergenic |
CCTAAACCGGTCCACCATAA+AGG | 0.397698 | 5.2:+25591972 | MS.gene68333:CDS |
AGGGATTAGATTTGAGGTAA+TGG | 0.398286 | 5.2:+25592541 | MS.gene68333:CDS |
AAATGGAAAGTGAGATTAGA+AGG | 0.401729 | 5.2:+25592468 | MS.gene68333:CDS |
CCTTCGGTTTATTATGAGAA+TGG | 0.405122 | 5.2:+25592197 | MS.gene68333:CDS |
TTGGTTTATTAATGTTCCTT+CGG | 0.408464 | 5.2:+25592181 | MS.gene68333:CDS |
TCCTTCTCACCCTTTCCATA+AGG | 0.413581 | 5.2:-25592437 | None:intergenic |
GGTTTATTATGAGAATGGTT+TGG | 0.433915 | 5.2:+25592202 | MS.gene68333:CDS |
GACTTGATTGTGTTATCGTT+TGG | 0.434475 | 5.2:+25592155 | MS.gene68333:CDS |
TGCAAAATGATTGTGTTCAT+TGG | 0.437679 | 5.2:+25592654 | MS.gene68333:CDS |
AACTGTTTCAAAACCTAAAC+CGG | 0.442193 | 5.2:+25591959 | MS.gene68333:CDS |
ATTTGGAGGGATTAGATTTG+AGG | 0.443087 | 5.2:+25592535 | MS.gene68333:CDS |
AGTGTAATTAAGACCGAAAC+CGG | 0.443307 | 5.2:-25592246 | None:intergenic |
TTGTGTTATCGTTTGGCAAT+TGG | 0.445306 | 5.2:+25592162 | MS.gene68333:CDS |
GTTGCTAAAGGGAATGGAAT+TGG | 0.445312 | 5.2:+25592338 | MS.gene68333:CDS |
ACACCGTTAGCGAACGGAAA+AGG | 0.447241 | 5.2:-25592620 | None:intergenic |
AAATGTATTGTATTAAAACT+TGG | 0.452232 | 5.2:-25592089 | None:intergenic |
AAGGATTGAGATTGAAGAAG+TGG | 0.457929 | 5.2:+25592487 | MS.gene68333:CDS |
GGTAATGGATGTAACTGAAT+TGG | 0.467735 | 5.2:+25592556 | MS.gene68333:CDS |
TAAGCACCTGGATGACCATC+TGG | 0.468486 | 5.2:-25592590 | None:intergenic |
ATGTCTCACTCTTCACTCCT+TGG | 0.471169 | 5.2:-25592752 | None:intergenic |
GATGAAGAAGTGGGATTGGA+AGG | 0.471664 | 5.2:+25592724 | MS.gene68333:CDS |
TTGAGAGGAAAGTTGCTAAA+GGG | 0.472700 | 5.2:+25592327 | MS.gene68333:CDS |
ATGCAACATTATCCGTGTAT+TGG | 0.475380 | 5.2:+25592024 | MS.gene68333:CDS |
GGTGATGAAAGATCAAAATC+CGG | 0.476546 | 5.2:+25592065 | MS.gene68333:CDS |
ATCTCATTCCAAGTATCTAT+AGG | 0.478611 | 5.2:-25592689 | None:intergenic |
TTGAGACCAGATGGTCATCC+AGG | 0.479603 | 5.2:+25592584 | MS.gene68333:CDS |
GTGTTCATTGGTGTTTGCCT+GGG | 0.480611 | 5.2:+25592666 | MS.gene68333:CDS |
TGCCTGGGCCTATAGATACT+TGG | 0.482132 | 5.2:+25592681 | MS.gene68333:CDS |
ACCATAAAGGTTCACATTGG+TGG | 0.496277 | 5.2:+25591985 | MS.gene68333:CDS |
TCTAGAGATGATGAAGAAGT+GGG | 0.498464 | 5.2:+25592715 | MS.gene68333:CDS |
TATTGTATTAAAACTTGGCC+CGG | 0.503179 | 5.2:-25592084 | None:intergenic |
TGTGAACCTTTATGGTGGAC+CGG | 0.509927 | 5.2:-25591978 | None:intergenic |
TTCTAGAGATGATGAAGAAG+TGG | 0.512711 | 5.2:+25592714 | MS.gene68333:CDS |
AAGACTGAACCTTATGGAAA+GGG | 0.515408 | 5.2:+25592428 | MS.gene68333:CDS |
AGGAAAGTTGCTAAAGGGAA+TGG | 0.518826 | 5.2:+25592332 | MS.gene68333:CDS |
TGGTCGCCATTTCTTGTGCA+AGG | 0.526450 | 5.2:+25592044 | MS.gene68333:CDS |
ATTGAGAGGAAAGTTGCTAA+AGG | 0.529202 | 5.2:+25592326 | MS.gene68333:CDS |
GTGATGAAAGATCAAAATCC+GGG | 0.544715 | 5.2:+25592066 | MS.gene68333:CDS |
AAAGACTGAACCTTATGGAA+AGG | 0.548583 | 5.2:+25592427 | MS.gene68333:CDS |
GATGGTGATTGGGATAAGGC+TGG | 0.558637 | 5.2:+25592395 | MS.gene68333:CDS |
TTCCAAGTATCTATAGGCCC+AGG | 0.563711 | 5.2:-25592683 | None:intergenic |
ATGAAGAAGTGGGATTGGAA+GGG | 0.584115 | 5.2:+25592725 | MS.gene68333:CDS |
ACCTTATGGAAAGGGTGAGA+AGG | 0.593453 | 5.2:+25592436 | MS.gene68333:CDS |
CAATCACCATCAAAATGAGA+AGG | 0.607997 | 5.2:-25592383 | None:intergenic |
AAGAAATGGCGACCAATACA+CGG | 0.614637 | 5.2:-25592036 | None:intergenic |
TTCGGAACACCGTTAGCGAA+CGG | 0.617341 | 5.2:-25592626 | None:intergenic |
AAAGGATTCATATAAGCACC+TGG | 0.621291 | 5.2:-25592602 | None:intergenic |
GTCTTAATAGCATAATTGAG+AGG | 0.633582 | 5.2:+25592312 | MS.gene68333:CDS |
TTGGCATTGTTGAGACCAGA+TGG | 0.642859 | 5.2:+25592575 | MS.gene68333:CDS |
GGGATTGGAAGGGACAGCCA+AGG | 0.651431 | 5.2:+25592735 | MS.gene68333:CDS |
CCATTCTCATAATAAACCGA+AGG | 0.655142 | 5.2:-25592197 | None:intergenic |
ACCAATGTGAACCTTTATGG+TGG | 0.671348 | 5.2:-25591983 | None:intergenic |
TCCACCATAAAGGTTCACAT+TGG | 0.672090 | 5.2:+25591982 | MS.gene68333:CDS |
AAATTGGCGAAGGATATGGA+TGG | 0.672881 | 5.2:+25592128 | MS.gene68333:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATGTATTGTATTAAAACT+TGG | - | chr5.2:25592092-25592111 | None:intergenic | 15.0% |
!!! | AAGTTTTAATACAATACATT+TGG | + | chr5.2:25592091-25592110 | MS.gene68333:CDS | 15.0% |
!!! | TTTTTATGTTCCATTAAGAA+AGG | + | chr5.2:25592277-25592296 | MS.gene68333:CDS | 20.0% |
! | AAGAAAAAAGCAAATGCATT+TGG | + | chr5.2:25592518-25592537 | MS.gene68333:CDS | 25.0% |
! | TTGGTTTATTAATGTTCCTT+CGG | + | chr5.2:25592181-25592200 | MS.gene68333:CDS | 25.0% |
AAAAAAGCAAATGCATTTGG+AGG | + | chr5.2:25592521-25592540 | MS.gene68333:CDS | 30.0% | |
AAAAAGCAAATGCATTTGGA+GGG | + | chr5.2:25592522-25592541 | MS.gene68333:CDS | 30.0% | |
AAATGGAAAGTGAGATTAGA+AGG | + | chr5.2:25592468-25592487 | MS.gene68333:CDS | 30.0% | |
AACTGTTTCAAAACCTAAAC+CGG | + | chr5.2:25591959-25591978 | MS.gene68333:CDS | 30.0% | |
ATCTCATTCCAAGTATCTAT+AGG | - | chr5.2:25592692-25592711 | None:intergenic | 30.0% | |
GGTCTTAATTACACTGATAT+TGG | + | chr5.2:25592254-25592273 | MS.gene68333:CDS | 30.0% | |
GGTTTATTATGAGAATGGTT+TGG | + | chr5.2:25592202-25592221 | MS.gene68333:CDS | 30.0% | |
GTCTTAATAGCATAATTGAG+AGG | + | chr5.2:25592312-25592331 | MS.gene68333:CDS | 30.0% | |
TATTGTATTAAAACTTGGCC+CGG | - | chr5.2:25592087-25592106 | None:intergenic | 30.0% | |
TGAGAAGGAAATTGGAAAAA+TGG | + | chr5.2:25592451-25592470 | MS.gene68333:CDS | 30.0% | |
TGCAAAATGATTGTGTTCAT+TGG | + | chr5.2:25592654-25592673 | MS.gene68333:CDS | 30.0% | |
TTAGGATGCTTAAATTGTTC+CGG | + | chr5.2:25592227-25592246 | MS.gene68333:CDS | 30.0% | |
TTCCATTAAGAAAGGCTTTA+AGG | + | chr5.2:25592285-25592304 | MS.gene68333:CDS | 30.0% | |
! | CAATCATTTTGCACATACTT+CGG | - | chr5.2:25592647-25592666 | None:intergenic | 30.0% |
! | TTTTCACCTTCTCATTTTGA+TGG | + | chr5.2:25592377-25592396 | MS.gene68333:CDS | 30.0% |
!!! | TATGAGAATGGTTTGGTTTT+AGG | + | chr5.2:25592209-25592228 | MS.gene68333:CDS | 30.0% |
!!! | TTCTCATTTTGATGGTGATT+GGG | + | chr5.2:25592385-25592404 | MS.gene68333:CDS | 30.0% |
AAAGACTGAACCTTATGGAA+AGG | + | chr5.2:25592427-25592446 | MS.gene68333:CDS | 35.0% | |
AAAGGATTCATATAAGCACC+TGG | - | chr5.2:25592605-25592624 | None:intergenic | 35.0% | |
AAGACTGAACCTTATGGAAA+GGG | + | chr5.2:25592428-25592447 | MS.gene68333:CDS | 35.0% | |
AAGGATTGAGATTGAAGAAG+TGG | + | chr5.2:25592487-25592506 | MS.gene68333:CDS | 35.0% | |
AGTGTAATTAAGACCGAAAC+CGG | - | chr5.2:25592249-25592268 | None:intergenic | 35.0% | |
ATGCAACATTATCCGTGTAT+TGG | + | chr5.2:25592024-25592043 | MS.gene68333:CDS | 35.0% | |
ATTGAGAGGAAAGTTGCTAA+AGG | + | chr5.2:25592326-25592345 | MS.gene68333:CDS | 35.0% | |
ATTTGGAGGGATTAGATTTG+AGG | + | chr5.2:25592535-25592554 | MS.gene68333:CDS | 35.0% | |
CAATCACCATCAAAATGAGA+AGG | - | chr5.2:25592386-25592405 | None:intergenic | 35.0% | |
CCATTCTCATAATAAACCGA+AGG | - | chr5.2:25592200-25592219 | None:intergenic | 35.0% | |
CCTTCGGTTTATTATGAGAA+TGG | + | chr5.2:25592197-25592216 | MS.gene68333:CDS | 35.0% | |
GACTTGATTGTGTTATCGTT+TGG | + | chr5.2:25592155-25592174 | MS.gene68333:CDS | 35.0% | |
GGTGATGAAAGATCAAAATC+CGG | + | chr5.2:25592065-25592084 | MS.gene68333:CDS | 35.0% | |
GTCCTTAAAGCCTTTCTTAA+TGG | - | chr5.2:25592290-25592309 | None:intergenic | 35.0% | |
GTGATGAAAGATCAAAATCC+GGG | + | chr5.2:25592066-25592085 | MS.gene68333:CDS | 35.0% | |
TCTAGAGATGATGAAGAAGT+GGG | + | chr5.2:25592715-25592734 | MS.gene68333:CDS | 35.0% | |
TGCTTAAATTGTTCCGGTTT+CGG | + | chr5.2:25592233-25592252 | MS.gene68333:CDS | 35.0% | |
TGTTCAAAGACTGAACCTTA+TGG | + | chr5.2:25592422-25592441 | MS.gene68333:CDS | 35.0% | |
TTGAGAGGAAAGTTGCTAAA+GGG | + | chr5.2:25592327-25592346 | MS.gene68333:CDS | 35.0% | |
TTGTGTTATCGTTTGGCAAT+TGG | + | chr5.2:25592162-25592181 | MS.gene68333:CDS | 35.0% | |
! | AGGGATTAGATTTGAGGTAA+TGG | + | chr5.2:25592541-25592560 | MS.gene68333:CDS | 35.0% |
! | TTCTAGAGATGATGAAGAAG+TGG | + | chr5.2:25592714-25592733 | MS.gene68333:CDS | 35.0% |
!! | GGTAATGGATGTAACTGAAT+TGG | + | chr5.2:25592556-25592575 | MS.gene68333:CDS | 35.0% |
!!! | CTTCTCATTTTGATGGTGAT+TGG | + | chr5.2:25592384-25592403 | MS.gene68333:CDS | 35.0% |
!!! | TTTTGATGGTGATTGGGATA+AGG | + | chr5.2:25592391-25592410 | MS.gene68333:CDS | 35.0% |
AAATTGGCGAAGGATATGGA+TGG | + | chr5.2:25592128-25592147 | MS.gene68333:CDS | 40.0% | |
AAGAAATGGCGACCAATACA+CGG | - | chr5.2:25592039-25592058 | None:intergenic | 40.0% | |
ACCAATGTGAACCTTTATGG+TGG | - | chr5.2:25591986-25592005 | None:intergenic | 40.0% | |
ACCATAAAGGTTCACATTGG+TGG | + | chr5.2:25591985-25592004 | MS.gene68333:CDS | 40.0% | |
AGATGATGAAGAAGTGGGAT+TGG | + | chr5.2:25592720-25592739 | MS.gene68333:CDS | 40.0% | |
AGGAAAGTTGCTAAAGGGAA+TGG | + | chr5.2:25592332-25592351 | MS.gene68333:CDS | 40.0% | |
ATGAAGAAGTGGGATTGGAA+GGG | + | chr5.2:25592725-25592744 | MS.gene68333:CDS | 40.0% | |
CGAAAAATTGGCGAAGGATA+TGG | + | chr5.2:25592124-25592143 | MS.gene68333:CDS | 40.0% | |
CGTTAACGAAAAATTGGCGA+AGG | + | chr5.2:25592118-25592137 | MS.gene68333:CDS | 40.0% | |
GGATCGCGTTAACGAAAAAT+TGG | + | chr5.2:25592112-25592131 | MS.gene68333:CDS | 40.0% | |
GTTGCTAAAGGGAATGGAAT+TGG | + | chr5.2:25592338-25592357 | MS.gene68333:CDS | 40.0% | |
TCATCACCTTGCACAAGAAA+TGG | - | chr5.2:25592053-25592072 | None:intergenic | 40.0% | |
TCCACCATAAAGGTTCACAT+TGG | + | chr5.2:25591982-25592001 | MS.gene68333:CDS | 40.0% | |
! | AATCCTTTTCCGTTCGCTAA+CGG | + | chr5.2:25592617-25592636 | MS.gene68333:CDS | 40.0% |
ACCTTATGGAAAGGGTGAGA+AGG | + | chr5.2:25592436-25592455 | MS.gene68333:CDS | 45.0% | |
GATGAAGAAGTGGGATTGGA+AGG | + | chr5.2:25592724-25592743 | MS.gene68333:CDS | 45.0% | |
GCCACCAATGTGAACCTTTA+TGG | - | chr5.2:25591989-25592008 | None:intergenic | 45.0% | |
GGAAAGGGTGAGAAGGAAAT+TGG | + | chr5.2:25592443-25592462 | MS.gene68333:CDS | 45.0% | |
TCCTTCTCACCCTTTCCATA+AGG | - | chr5.2:25592440-25592459 | None:intergenic | 45.0% | |
TTCCAAGTATCTATAGGCCC+AGG | - | chr5.2:25592686-25592705 | None:intergenic | 45.0% | |
TTGGCATTGTTGAGACCAGA+TGG | + | chr5.2:25592575-25592594 | MS.gene68333:CDS | 45.0% | |
! | GTGTTCATTGGTGTTTGCCT+GGG | + | chr5.2:25592666-25592685 | MS.gene68333:CDS | 45.0% |
! | TGTGTTCATTGGTGTTTGCC+TGG | + | chr5.2:25592665-25592684 | MS.gene68333:CDS | 45.0% |
!! | TGTGAACCTTTATGGTGGAC+CGG | - | chr5.2:25591981-25592000 | None:intergenic | 45.0% |
ACACCGTTAGCGAACGGAAA+AGG | - | chr5.2:25592623-25592642 | None:intergenic | 50.0% | |
CCTAAACCGGTCCACCATAA+AGG | + | chr5.2:25591972-25591991 | MS.gene68333:CDS | 50.0% | |
GATGGTGATTGGGATAAGGC+TGG | + | chr5.2:25592395-25592414 | MS.gene68333:CDS | 50.0% | |
TAAGCACCTGGATGACCATC+TGG | - | chr5.2:25592593-25592612 | None:intergenic | 50.0% | |
TGCCTGGGCCTATAGATACT+TGG | + | chr5.2:25592681-25592700 | MS.gene68333:CDS | 50.0% | |
TGGTCGCCATTTCTTGTGCA+AGG | + | chr5.2:25592044-25592063 | MS.gene68333:CDS | 50.0% | |
TTCGGAACACCGTTAGCGAA+CGG | - | chr5.2:25592629-25592648 | None:intergenic | 50.0% | |
TTGAGACCAGATGGTCATCC+AGG | + | chr5.2:25592584-25592603 | MS.gene68333:CDS | 50.0% | |
!! | CCTTTATGGTGGACCGGTTT+AGG | - | chr5.2:25591975-25591994 | None:intergenic | 50.0% |
GGGATTGGAAGGGACAGCCA+AGG | + | chr5.2:25592735-25592754 | MS.gene68333:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 25591951 | 25592769 | 25591951 | ID=MS.gene68333 |
chr5.2 | mRNA | 25591951 | 25592769 | 25591951 | ID=MS.gene68333.t1;Parent=MS.gene68333 |
chr5.2 | exon | 25591951 | 25592769 | 25591951 | ID=MS.gene68333.t1.exon1;Parent=MS.gene68333.t1 |
chr5.2 | CDS | 25591951 | 25592769 | 25591951 | ID=cds.MS.gene68333.t1;Parent=MS.gene68333.t1 |
Gene Sequence |
Protein sequence |