AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68333


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68333.t1 MTR_5g035080 96.324 272 10 0 1 272 162 433 0.0 551
MS.gene68333.t1 MTR_5g035140 68.702 262 80 2 1 261 7 267 4.15e-139 392
MS.gene68333.t1 MTR_5g035150 71.910 267 68 3 1 263 172 435 3.28e-136 391
MS.gene68333.t1 MTR_3g109840 68.966 261 79 2 1 261 159 417 4.44e-132 380
MS.gene68333.t1 MTR_8g104970 67.433 261 83 2 1 260 207 466 3.50e-131 380
MS.gene68333.t1 MTR_5g035070 66.929 254 79 3 19 272 196 444 1.90e-121 354
MS.gene68333.t1 MTR_7g033230 64.122 262 92 2 1 261 351 611 1.44e-120 357
MS.gene68333.t1 MTR_7g033230 64.122 262 92 2 1 261 421 681 1.13e-119 357
MS.gene68333.t1 MTR_5g035090 63.670 267 88 4 1 263 170 431 4.89e-119 348
MS.gene68333.t1 MTR_8g099300 40.602 266 142 8 2 259 162 419 1.55e-58 192
MS.gene68333.t1 MTR_6g016880 36.330 267 152 9 1 260 165 420 2.77e-54 181
MS.gene68333.t1 MTR_8g027900 36.842 266 153 7 1 259 298 555 1.84e-52 179
MS.gene68333.t1 MTR_6g016875 36.704 267 146 10 5 260 155 409 2.32e-52 176
MS.gene68333.t1 MTR_7g019120 34.082 267 158 9 1 260 166 421 2.99e-47 163
MS.gene68333.t1 MTR_6g007777 35.206 267 156 8 1 261 204 459 3.53e-47 164
MS.gene68333.t1 MTR_2g016060 32.852 277 155 12 1 261 141 402 4.14e-43 151
MS.gene68333.t1 MTR_1g076690 29.670 273 170 10 1 261 310 572 2.39e-28 114
MS.gene68333.t1 MTR_6g061710 29.562 274 169 11 1 261 254 516 8.55e-26 106
MS.gene68333.t1 MTR_7g117160 34.194 155 67 5 104 258 70 189 1.36e-19 84.3
MS.gene68333.t1 MTR_0136s0010 29.771 262 149 13 11 261 275 512 1.39e-19 88.6
MS.gene68333.t1 MTR_8g069790 27.407 270 155 12 5 262 279 519 3.76e-19 87.0
MS.gene68333.t1 MTR_7g094750 29.167 264 143 16 13 261 200 434 4.94e-19 86.7
MS.gene68333.t1 MTR_1g058380 26.923 260 151 13 13 261 166 397 3.66e-18 84.0
MS.gene68333.t1 MTR_2g022560 28.740 254 160 9 13 263 206 441 4.52e-18 83.6
MS.gene68333.t1 MTR_4g125060 26.423 246 149 8 19 259 321 539 8.90e-18 83.2
MS.gene68333.t1 MTR_4g125060 26.423 246 149 8 19 259 253 471 9.61e-18 82.8
MS.gene68333.t1 MTR_4g125060 26.423 246 149 8 19 259 292 510 1.12e-17 82.8
MS.gene68333.t1 MTR_5g059400 27.675 271 151 15 16 270 287 528 6.63e-17 80.5
MS.gene68333.t1 MTR_1g116130 27.675 271 151 15 16 270 287 528 6.63e-17 80.5
MS.gene68333.t1 MTR_7g093450 28.571 273 158 13 11 270 353 601 1.08e-16 80.1
MS.gene68333.t1 MTR_5g033800 27.059 255 155 10 14 261 255 485 4.09e-16 78.2
MS.gene68333.t1 MTR_8g093530 29.218 243 135 12 21 259 207 416 8.51e-16 77.0
MS.gene68333.t1 MTR_6g016240 34.711 121 65 5 141 259 308 416 2.08e-15 75.9
MS.gene68333.t1 MTR_4g016940 27.490 251 144 12 24 259 200 427 9.42e-15 73.9
MS.gene68333.t1 MTR_8g093870 23.622 254 146 9 19 259 254 472 3.09e-14 72.4
MS.gene68333.t1 MTR_4g121560 25.746 268 162 10 2 259 213 453 3.42e-14 72.4
MS.gene68333.t1 MTR_3g464570 26.190 252 147 10 20 259 48 272 4.57e-13 67.8
MS.gene68333.t1 MTR_7g019130 31.818 132 78 6 28 154 1 125 7.16e-13 65.1
MS.gene68333.t1 MTR_7g109550 25.461 271 156 12 1 256 225 464 8.21e-13 68.2
MS.gene68333.t1 MTR_4g102570 34.109 129 70 4 26 148 2 121 9.57e-13 65.1
MS.gene68333.t1 MTR_3g464570 26.087 253 148 10 19 259 151 376 1.50e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68333.t1 AT1G70230 47.940 267 116 8 1 262 166 414 1.40e-80 249
MS.gene68333.t1 AT1G01430 38.376 271 146 10 1 259 186 447 3.08e-54 182
MS.gene68333.t1 AT4G23790 37.313 268 152 9 1 259 167 427 2.88e-51 173
MS.gene68333.t1 AT3G02440 36.905 252 143 7 19 265 242 482 4.83e-51 174
MS.gene68333.t1 AT3G02440 36.905 252 143 7 19 265 234 474 4.86e-51 174
MS.gene68333.t1 AT4G01080 36.882 263 148 9 1 257 178 428 4.98e-51 173
MS.gene68333.t1 AT5G15890 39.024 246 129 9 19 260 295 523 6.63e-51 174
MS.gene68333.t1 AT4G11090 37.218 266 153 8 1 259 167 425 6.66e-49 167
MS.gene68333.t1 AT5G15900 34.432 273 160 10 1 266 156 416 5.01e-47 162
MS.gene68333.t1 AT5G15900 34.432 273 160 10 1 266 175 435 6.40e-47 162
MS.gene68333.t1 AT3G28150 32.836 268 161 9 1 261 157 412 4.82e-42 149
MS.gene68333.t1 AT4G25360 28.261 276 172 9 1 261 262 526 7.30e-26 106
MS.gene68333.t1 AT4G25360 28.261 276 172 9 1 261 262 526 7.30e-26 106
MS.gene68333.t1 AT5G51640 27.723 303 157 13 1 270 225 498 1.30e-24 102
MS.gene68333.t1 AT3G11570 28.030 264 154 11 13 267 191 427 1.43e-21 93.6
MS.gene68333.t1 AT5G19160 27.586 261 173 8 13 270 208 455 5.62e-21 92.4
MS.gene68333.t1 AT5G64020 27.778 252 150 10 19 259 178 408 1.13e-19 88.2
MS.gene68333.t1 AT3G06080 27.481 262 151 11 13 261 212 447 1.75e-19 87.8
MS.gene68333.t1 AT5G06700 29.231 260 147 13 21 269 372 605 1.90e-18 85.1
MS.gene68333.t1 AT2G14530 26.415 265 138 11 21 259 173 406 2.41e-18 84.3
MS.gene68333.t1 AT3G12060 29.231 260 147 13 21 269 313 546 6.22e-18 83.6
MS.gene68333.t1 AT5G20680 25.591 254 141 8 19 259 333 551 1.15e-17 82.8
MS.gene68333.t1 AT5G20680 25.591 254 141 8 19 259 333 551 1.15e-17 82.8
MS.gene68333.t1 AT5G20680 25.591 254 141 8 19 259 333 551 1.15e-17 82.8
MS.gene68333.t1 AT5G20680 25.591 254 141 8 19 259 333 551 1.15e-17 82.8
MS.gene68333.t1 AT5G20680 25.591 254 141 8 19 259 315 533 1.17e-17 82.8
MS.gene68333.t1 AT5G20680 25.781 256 138 9 19 259 239 457 1.34e-17 82.4
MS.gene68333.t1 AT5G06230 28.516 256 147 11 13 259 136 364 4.47e-16 77.4
MS.gene68333.t1 AT1G48880 31.687 243 129 13 20 259 231 439 6.47e-16 77.4
MS.gene68333.t1 AT5G06230 27.652 264 155 11 13 267 177 413 7.66e-16 77.0
MS.gene68333.t1 AT5G58600 25.403 248 156 8 19 259 175 400 5.98e-15 74.3
MS.gene68333.t1 AT1G60790 23.774 265 170 12 5 260 293 534 4.08e-14 72.4
MS.gene68333.t1 AT5G20590 26.877 253 153 11 14 259 252 479 4.36e-14 72.0
MS.gene68333.t1 AT2G37720 24.345 267 150 7 8 259 253 482 3.92e-13 69.3
MS.gene68333.t1 AT2G30010 25.714 245 154 9 24 259 171 396 8.03e-13 68.2
MS.gene68333.t1 AT2G30010 26.016 246 152 11 24 259 214 439 9.51e-13 68.2
MS.gene68333.t1 AT2G40160 25.498 251 146 13 24 255 191 419 1.55e-11 64.3
MS.gene68333.t1 AT2G40160 25.000 256 151 13 19 255 186 419 1.79e-11 64.3
MS.gene68333.t1 AT5G01360 27.160 243 150 11 24 256 150 375 1.81e-11 63.9
MS.gene68333.t1 AT2G42570 27.027 259 138 14 11 259 147 364 2.75e-11 63.5
MS.gene68333.t1 AT5G64470 30.769 117 69 4 144 259 289 394 3.29e-11 63.5
MS.gene68333.t1 AT5G01360 27.160 243 150 11 24 256 206 431 3.57e-11 63.5
MS.gene68333.t1 AT3G62390 24.101 278 165 14 1 261 226 474 4.46e-11 63.2

Find 66 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTTAAAGCCTTTCTTAA+TGG 0.091385 5.2:-25592287 None:intergenic
TTCCATTAAGAAAGGCTTTA+AGG 0.121836 5.2:+25592285 MS.gene68333:CDS
GCCACCAATGTGAACCTTTA+TGG 0.250930 5.2:-25591986 None:intergenic
TGCTTAAATTGTTCCGGTTT+CGG 0.254274 5.2:+25592233 MS.gene68333:CDS
CCTTTATGGTGGACCGGTTT+AGG 0.263456 5.2:-25591972 None:intergenic
GGTCTTAATTACACTGATAT+TGG 0.285156 5.2:+25592254 MS.gene68333:CDS
GGAAAGGGTGAGAAGGAAAT+TGG 0.307402 5.2:+25592443 MS.gene68333:CDS
TGTGTTCATTGGTGTTTGCC+TGG 0.324131 5.2:+25592665 MS.gene68333:CDS
TGTTCAAAGACTGAACCTTA+TGG 0.369816 5.2:+25592422 MS.gene68333:CDS
TTAGGATGCTTAAATTGTTC+CGG 0.372597 5.2:+25592227 MS.gene68333:CDS
AGATGATGAAGAAGTGGGAT+TGG 0.380315 5.2:+25592720 MS.gene68333:CDS
TCATCACCTTGCACAAGAAA+TGG 0.391236 5.2:-25592050 None:intergenic
CCTAAACCGGTCCACCATAA+AGG 0.397698 5.2:+25591972 MS.gene68333:CDS
AGGGATTAGATTTGAGGTAA+TGG 0.398286 5.2:+25592541 MS.gene68333:CDS
AAATGGAAAGTGAGATTAGA+AGG 0.401729 5.2:+25592468 MS.gene68333:CDS
CCTTCGGTTTATTATGAGAA+TGG 0.405122 5.2:+25592197 MS.gene68333:CDS
TTGGTTTATTAATGTTCCTT+CGG 0.408464 5.2:+25592181 MS.gene68333:CDS
TCCTTCTCACCCTTTCCATA+AGG 0.413581 5.2:-25592437 None:intergenic
GGTTTATTATGAGAATGGTT+TGG 0.433915 5.2:+25592202 MS.gene68333:CDS
GACTTGATTGTGTTATCGTT+TGG 0.434475 5.2:+25592155 MS.gene68333:CDS
TGCAAAATGATTGTGTTCAT+TGG 0.437679 5.2:+25592654 MS.gene68333:CDS
AACTGTTTCAAAACCTAAAC+CGG 0.442193 5.2:+25591959 MS.gene68333:CDS
ATTTGGAGGGATTAGATTTG+AGG 0.443087 5.2:+25592535 MS.gene68333:CDS
AGTGTAATTAAGACCGAAAC+CGG 0.443307 5.2:-25592246 None:intergenic
TTGTGTTATCGTTTGGCAAT+TGG 0.445306 5.2:+25592162 MS.gene68333:CDS
GTTGCTAAAGGGAATGGAAT+TGG 0.445312 5.2:+25592338 MS.gene68333:CDS
ACACCGTTAGCGAACGGAAA+AGG 0.447241 5.2:-25592620 None:intergenic
AAATGTATTGTATTAAAACT+TGG 0.452232 5.2:-25592089 None:intergenic
AAGGATTGAGATTGAAGAAG+TGG 0.457929 5.2:+25592487 MS.gene68333:CDS
GGTAATGGATGTAACTGAAT+TGG 0.467735 5.2:+25592556 MS.gene68333:CDS
TAAGCACCTGGATGACCATC+TGG 0.468486 5.2:-25592590 None:intergenic
ATGTCTCACTCTTCACTCCT+TGG 0.471169 5.2:-25592752 None:intergenic
GATGAAGAAGTGGGATTGGA+AGG 0.471664 5.2:+25592724 MS.gene68333:CDS
TTGAGAGGAAAGTTGCTAAA+GGG 0.472700 5.2:+25592327 MS.gene68333:CDS
ATGCAACATTATCCGTGTAT+TGG 0.475380 5.2:+25592024 MS.gene68333:CDS
GGTGATGAAAGATCAAAATC+CGG 0.476546 5.2:+25592065 MS.gene68333:CDS
ATCTCATTCCAAGTATCTAT+AGG 0.478611 5.2:-25592689 None:intergenic
TTGAGACCAGATGGTCATCC+AGG 0.479603 5.2:+25592584 MS.gene68333:CDS
GTGTTCATTGGTGTTTGCCT+GGG 0.480611 5.2:+25592666 MS.gene68333:CDS
TGCCTGGGCCTATAGATACT+TGG 0.482132 5.2:+25592681 MS.gene68333:CDS
ACCATAAAGGTTCACATTGG+TGG 0.496277 5.2:+25591985 MS.gene68333:CDS
TCTAGAGATGATGAAGAAGT+GGG 0.498464 5.2:+25592715 MS.gene68333:CDS
TATTGTATTAAAACTTGGCC+CGG 0.503179 5.2:-25592084 None:intergenic
TGTGAACCTTTATGGTGGAC+CGG 0.509927 5.2:-25591978 None:intergenic
TTCTAGAGATGATGAAGAAG+TGG 0.512711 5.2:+25592714 MS.gene68333:CDS
AAGACTGAACCTTATGGAAA+GGG 0.515408 5.2:+25592428 MS.gene68333:CDS
AGGAAAGTTGCTAAAGGGAA+TGG 0.518826 5.2:+25592332 MS.gene68333:CDS
TGGTCGCCATTTCTTGTGCA+AGG 0.526450 5.2:+25592044 MS.gene68333:CDS
ATTGAGAGGAAAGTTGCTAA+AGG 0.529202 5.2:+25592326 MS.gene68333:CDS
GTGATGAAAGATCAAAATCC+GGG 0.544715 5.2:+25592066 MS.gene68333:CDS
AAAGACTGAACCTTATGGAA+AGG 0.548583 5.2:+25592427 MS.gene68333:CDS
GATGGTGATTGGGATAAGGC+TGG 0.558637 5.2:+25592395 MS.gene68333:CDS
TTCCAAGTATCTATAGGCCC+AGG 0.563711 5.2:-25592683 None:intergenic
ATGAAGAAGTGGGATTGGAA+GGG 0.584115 5.2:+25592725 MS.gene68333:CDS
ACCTTATGGAAAGGGTGAGA+AGG 0.593453 5.2:+25592436 MS.gene68333:CDS
CAATCACCATCAAAATGAGA+AGG 0.607997 5.2:-25592383 None:intergenic
AAGAAATGGCGACCAATACA+CGG 0.614637 5.2:-25592036 None:intergenic
TTCGGAACACCGTTAGCGAA+CGG 0.617341 5.2:-25592626 None:intergenic
AAAGGATTCATATAAGCACC+TGG 0.621291 5.2:-25592602 None:intergenic
GTCTTAATAGCATAATTGAG+AGG 0.633582 5.2:+25592312 MS.gene68333:CDS
TTGGCATTGTTGAGACCAGA+TGG 0.642859 5.2:+25592575 MS.gene68333:CDS
GGGATTGGAAGGGACAGCCA+AGG 0.651431 5.2:+25592735 MS.gene68333:CDS
CCATTCTCATAATAAACCGA+AGG 0.655142 5.2:-25592197 None:intergenic
ACCAATGTGAACCTTTATGG+TGG 0.671348 5.2:-25591983 None:intergenic
TCCACCATAAAGGTTCACAT+TGG 0.672090 5.2:+25591982 MS.gene68333:CDS
AAATTGGCGAAGGATATGGA+TGG 0.672881 5.2:+25592128 MS.gene68333:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGTATTGTATTAAAACT+TGG - chr5.2:25592092-25592111 None:intergenic 15.0%
!!! AAGTTTTAATACAATACATT+TGG + chr5.2:25592091-25592110 MS.gene68333:CDS 15.0%
!!! TTTTTATGTTCCATTAAGAA+AGG + chr5.2:25592277-25592296 MS.gene68333:CDS 20.0%
! AAGAAAAAAGCAAATGCATT+TGG + chr5.2:25592518-25592537 MS.gene68333:CDS 25.0%
! TTGGTTTATTAATGTTCCTT+CGG + chr5.2:25592181-25592200 MS.gene68333:CDS 25.0%
AAAAAAGCAAATGCATTTGG+AGG + chr5.2:25592521-25592540 MS.gene68333:CDS 30.0%
AAAAAGCAAATGCATTTGGA+GGG + chr5.2:25592522-25592541 MS.gene68333:CDS 30.0%
AAATGGAAAGTGAGATTAGA+AGG + chr5.2:25592468-25592487 MS.gene68333:CDS 30.0%
AACTGTTTCAAAACCTAAAC+CGG + chr5.2:25591959-25591978 MS.gene68333:CDS 30.0%
ATCTCATTCCAAGTATCTAT+AGG - chr5.2:25592692-25592711 None:intergenic 30.0%
GGTCTTAATTACACTGATAT+TGG + chr5.2:25592254-25592273 MS.gene68333:CDS 30.0%
GGTTTATTATGAGAATGGTT+TGG + chr5.2:25592202-25592221 MS.gene68333:CDS 30.0%
GTCTTAATAGCATAATTGAG+AGG + chr5.2:25592312-25592331 MS.gene68333:CDS 30.0%
TATTGTATTAAAACTTGGCC+CGG - chr5.2:25592087-25592106 None:intergenic 30.0%
TGAGAAGGAAATTGGAAAAA+TGG + chr5.2:25592451-25592470 MS.gene68333:CDS 30.0%
TGCAAAATGATTGTGTTCAT+TGG + chr5.2:25592654-25592673 MS.gene68333:CDS 30.0%
TTAGGATGCTTAAATTGTTC+CGG + chr5.2:25592227-25592246 MS.gene68333:CDS 30.0%
TTCCATTAAGAAAGGCTTTA+AGG + chr5.2:25592285-25592304 MS.gene68333:CDS 30.0%
! CAATCATTTTGCACATACTT+CGG - chr5.2:25592647-25592666 None:intergenic 30.0%
! TTTTCACCTTCTCATTTTGA+TGG + chr5.2:25592377-25592396 MS.gene68333:CDS 30.0%
!!! TATGAGAATGGTTTGGTTTT+AGG + chr5.2:25592209-25592228 MS.gene68333:CDS 30.0%
!!! TTCTCATTTTGATGGTGATT+GGG + chr5.2:25592385-25592404 MS.gene68333:CDS 30.0%
AAAGACTGAACCTTATGGAA+AGG + chr5.2:25592427-25592446 MS.gene68333:CDS 35.0%
AAAGGATTCATATAAGCACC+TGG - chr5.2:25592605-25592624 None:intergenic 35.0%
AAGACTGAACCTTATGGAAA+GGG + chr5.2:25592428-25592447 MS.gene68333:CDS 35.0%
AAGGATTGAGATTGAAGAAG+TGG + chr5.2:25592487-25592506 MS.gene68333:CDS 35.0%
AGTGTAATTAAGACCGAAAC+CGG - chr5.2:25592249-25592268 None:intergenic 35.0%
ATGCAACATTATCCGTGTAT+TGG + chr5.2:25592024-25592043 MS.gene68333:CDS 35.0%
ATTGAGAGGAAAGTTGCTAA+AGG + chr5.2:25592326-25592345 MS.gene68333:CDS 35.0%
ATTTGGAGGGATTAGATTTG+AGG + chr5.2:25592535-25592554 MS.gene68333:CDS 35.0%
CAATCACCATCAAAATGAGA+AGG - chr5.2:25592386-25592405 None:intergenic 35.0%
CCATTCTCATAATAAACCGA+AGG - chr5.2:25592200-25592219 None:intergenic 35.0%
CCTTCGGTTTATTATGAGAA+TGG + chr5.2:25592197-25592216 MS.gene68333:CDS 35.0%
GACTTGATTGTGTTATCGTT+TGG + chr5.2:25592155-25592174 MS.gene68333:CDS 35.0%
GGTGATGAAAGATCAAAATC+CGG + chr5.2:25592065-25592084 MS.gene68333:CDS 35.0%
GTCCTTAAAGCCTTTCTTAA+TGG - chr5.2:25592290-25592309 None:intergenic 35.0%
GTGATGAAAGATCAAAATCC+GGG + chr5.2:25592066-25592085 MS.gene68333:CDS 35.0%
TCTAGAGATGATGAAGAAGT+GGG + chr5.2:25592715-25592734 MS.gene68333:CDS 35.0%
TGCTTAAATTGTTCCGGTTT+CGG + chr5.2:25592233-25592252 MS.gene68333:CDS 35.0%
TGTTCAAAGACTGAACCTTA+TGG + chr5.2:25592422-25592441 MS.gene68333:CDS 35.0%
TTGAGAGGAAAGTTGCTAAA+GGG + chr5.2:25592327-25592346 MS.gene68333:CDS 35.0%
TTGTGTTATCGTTTGGCAAT+TGG + chr5.2:25592162-25592181 MS.gene68333:CDS 35.0%
! AGGGATTAGATTTGAGGTAA+TGG + chr5.2:25592541-25592560 MS.gene68333:CDS 35.0%
! TTCTAGAGATGATGAAGAAG+TGG + chr5.2:25592714-25592733 MS.gene68333:CDS 35.0%
!! GGTAATGGATGTAACTGAAT+TGG + chr5.2:25592556-25592575 MS.gene68333:CDS 35.0%
!!! CTTCTCATTTTGATGGTGAT+TGG + chr5.2:25592384-25592403 MS.gene68333:CDS 35.0%
!!! TTTTGATGGTGATTGGGATA+AGG + chr5.2:25592391-25592410 MS.gene68333:CDS 35.0%
AAATTGGCGAAGGATATGGA+TGG + chr5.2:25592128-25592147 MS.gene68333:CDS 40.0%
AAGAAATGGCGACCAATACA+CGG - chr5.2:25592039-25592058 None:intergenic 40.0%
ACCAATGTGAACCTTTATGG+TGG - chr5.2:25591986-25592005 None:intergenic 40.0%
ACCATAAAGGTTCACATTGG+TGG + chr5.2:25591985-25592004 MS.gene68333:CDS 40.0%
AGATGATGAAGAAGTGGGAT+TGG + chr5.2:25592720-25592739 MS.gene68333:CDS 40.0%
AGGAAAGTTGCTAAAGGGAA+TGG + chr5.2:25592332-25592351 MS.gene68333:CDS 40.0%
ATGAAGAAGTGGGATTGGAA+GGG + chr5.2:25592725-25592744 MS.gene68333:CDS 40.0%
CGAAAAATTGGCGAAGGATA+TGG + chr5.2:25592124-25592143 MS.gene68333:CDS 40.0%
CGTTAACGAAAAATTGGCGA+AGG + chr5.2:25592118-25592137 MS.gene68333:CDS 40.0%
GGATCGCGTTAACGAAAAAT+TGG + chr5.2:25592112-25592131 MS.gene68333:CDS 40.0%
GTTGCTAAAGGGAATGGAAT+TGG + chr5.2:25592338-25592357 MS.gene68333:CDS 40.0%
TCATCACCTTGCACAAGAAA+TGG - chr5.2:25592053-25592072 None:intergenic 40.0%
TCCACCATAAAGGTTCACAT+TGG + chr5.2:25591982-25592001 MS.gene68333:CDS 40.0%
! AATCCTTTTCCGTTCGCTAA+CGG + chr5.2:25592617-25592636 MS.gene68333:CDS 40.0%
ACCTTATGGAAAGGGTGAGA+AGG + chr5.2:25592436-25592455 MS.gene68333:CDS 45.0%
GATGAAGAAGTGGGATTGGA+AGG + chr5.2:25592724-25592743 MS.gene68333:CDS 45.0%
GCCACCAATGTGAACCTTTA+TGG - chr5.2:25591989-25592008 None:intergenic 45.0%
GGAAAGGGTGAGAAGGAAAT+TGG + chr5.2:25592443-25592462 MS.gene68333:CDS 45.0%
TCCTTCTCACCCTTTCCATA+AGG - chr5.2:25592440-25592459 None:intergenic 45.0%
TTCCAAGTATCTATAGGCCC+AGG - chr5.2:25592686-25592705 None:intergenic 45.0%
TTGGCATTGTTGAGACCAGA+TGG + chr5.2:25592575-25592594 MS.gene68333:CDS 45.0%
! GTGTTCATTGGTGTTTGCCT+GGG + chr5.2:25592666-25592685 MS.gene68333:CDS 45.0%
! TGTGTTCATTGGTGTTTGCC+TGG + chr5.2:25592665-25592684 MS.gene68333:CDS 45.0%
!! TGTGAACCTTTATGGTGGAC+CGG - chr5.2:25591981-25592000 None:intergenic 45.0%
ACACCGTTAGCGAACGGAAA+AGG - chr5.2:25592623-25592642 None:intergenic 50.0%
CCTAAACCGGTCCACCATAA+AGG + chr5.2:25591972-25591991 MS.gene68333:CDS 50.0%
GATGGTGATTGGGATAAGGC+TGG + chr5.2:25592395-25592414 MS.gene68333:CDS 50.0%
TAAGCACCTGGATGACCATC+TGG - chr5.2:25592593-25592612 None:intergenic 50.0%
TGCCTGGGCCTATAGATACT+TGG + chr5.2:25592681-25592700 MS.gene68333:CDS 50.0%
TGGTCGCCATTTCTTGTGCA+AGG + chr5.2:25592044-25592063 MS.gene68333:CDS 50.0%
TTCGGAACACCGTTAGCGAA+CGG - chr5.2:25592629-25592648 None:intergenic 50.0%
TTGAGACCAGATGGTCATCC+AGG + chr5.2:25592584-25592603 MS.gene68333:CDS 50.0%
!! CCTTTATGGTGGACCGGTTT+AGG - chr5.2:25591975-25591994 None:intergenic 50.0%
GGGATTGGAAGGGACAGCCA+AGG + chr5.2:25592735-25592754 MS.gene68333:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 25591951 25592769 25591951 ID=MS.gene68333
chr5.2 mRNA 25591951 25592769 25591951 ID=MS.gene68333.t1;Parent=MS.gene68333
chr5.2 exon 25591951 25592769 25591951 ID=MS.gene68333.t1.exon1;Parent=MS.gene68333.t1
chr5.2 CDS 25591951 25592769 25591951 ID=cds.MS.gene68333.t1;Parent=MS.gene68333.t1
Gene Sequence

>MS.gene68333

ATGTTAGCAACTGTTTCAAAACCTAAACCGGTCCACCATAAAGGTTCACATTGGTGGCATTTTTCTTCTCATAATGCAACATTATCCGTGTATTGGTCGCCATTTCTTGTGCAAGGTGATGAAAGATCAAAATCCGGGCCAAGTTTTAATACAATACATTTGGATCGCGTTAACGAAAAATTGGCGAAGGATATGGATGGAATTGACTTGATTGTGTTATCGTTTGGCAATTGGTTTATTAATGTTCCTTCGGTTTATTATGAGAATGGTTTGGTTTTAGGATGCTTAAATTGTTCCGGTTTCGGTCTTAATTACACTGATATTGGTTTTTATGTTCCATTAAGAAAGGCTTTAAGGACTTGTCTTAATAGCATAATTGAGAGGAAAGTTGCTAAAGGGAATGGAATTGGTGTAATTGTGAAAACTTTTTCACCTTCTCATTTTGATGGTGATTGGGATAAGGCTGGTACATGTTCAAAGACTGAACCTTATGGAAAGGGTGAGAAGGAAATTGGAAAAATGGAAAGTGAGATTAGAAGGATTGAGATTGAAGAAGTGGAAAATGCTAAGAAAAAAGCAAATGCATTTGGAGGGATTAGATTTGAGGTAATGGATGTAACTGAATTGGCATTGTTGAGACCAGATGGTCATCCAGGTGCTTATATGAATCCTTTTCCGTTCGCTAACGGTGTTCCGAAGTATGTGCAAAATGATTGTGTTCATTGGTGTTTGCCTGGGCCTATAGATACTTGGAATGAGATTTTTCTAGAGATGATGAAGAAGTGGGATTGGAAGGGACAGCCAAGGAGTGAAGAGTGA

Protein sequence

>MS.gene68333.t1

MLATVSKPKPVHHKGSHWWHFSSHNATLSVYWSPFLVQGDERSKSGPSFNTIHLDRVNEKLAKDMDGIDLIVLSFGNWFINVPSVYYENGLVLGCLNCSGFGLNYTDIGFYVPLRKALRTCLNSIIERKVAKGNGIGVIVKTFSPSHFDGDWDKAGTCSKTEPYGKGEKEIGKMESEIRRIEIEEVENAKKKANAFGGIRFEVMDVTELALLRPDGHPGAYMNPFPFANGVPKYVQNDCVHWCLPGPIDTWNEIFLEMMKKWDWKGQPRSEE