Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90819.t1 | AFK46547.1 | 94.2 | 224 | 12 | 1 | 1 | 224 | 1 | 223 | 2.70E-114 | 421.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90819.t1 | Q53B75 | 74.4 | 215 | 55 | 0 | 4 | 218 | 2 | 216 | 8.7e-90 | 331.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90819.t1 | I3T205 | 94.2 | 224 | 12 | 1 | 1 | 224 | 1 | 223 | 1.9e-114 | 421.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04921 | MS.gene90819 | 0.866665 | 2.41E-65 | -1.69E-46 |
| MS.gene049633 | MS.gene90819 | -0.803338 | 3.66E-49 | -1.69E-46 |
| MS.gene050170 | MS.gene90819 | -0.849732 | 2.68E-60 | -1.69E-46 |
| MS.gene050328 | MS.gene90819 | 0.813986 | 1.94E-51 | -1.69E-46 |
| MS.gene050338 | MS.gene90819 | 0.833791 | 4.35E-56 | -1.69E-46 |
| MS.gene050496 | MS.gene90819 | -0.813702 | 2.24E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene90819 | -0.819227 | 1.30E-52 | -1.69E-46 |
| MS.gene050818 | MS.gene90819 | 0.808282 | 3.34E-50 | -1.69E-46 |
| MS.gene050904 | MS.gene90819 | -0.801091 | 1.06E-48 | -1.69E-46 |
| MS.gene051044 | MS.gene90819 | 0.805265 | 1.45E-49 | -1.69E-46 |
| MS.gene051138 | MS.gene90819 | 0.80736 | 5.25E-50 | -1.69E-46 |
| MS.gene051422 | MS.gene90819 | 0.809551 | 1.79E-50 | -1.69E-46 |
| MS.gene051439 | MS.gene90819 | 0.818247 | 2.16E-52 | -1.69E-46 |
| MS.gene051440 | MS.gene90819 | 0.804882 | 1.74E-49 | -1.69E-46 |
| MS.gene051651 | MS.gene90819 | 0.82439 | 8.28E-54 | -1.69E-46 |
| MS.gene051973 | MS.gene90819 | 0.806642 | 7.45E-50 | -1.69E-46 |
| MS.gene052494 | MS.gene90819 | 0.869784 | 2.39E-66 | -1.69E-46 |
| MS.gene052606 | MS.gene90819 | 0.827238 | 1.75E-54 | -1.69E-46 |
| MS.gene053097 | MS.gene90819 | 0.855037 | 8.25E-62 | -1.69E-46 |
| MS.gene053218 | MS.gene90819 | 0.801209 | 1.00E-48 | -1.69E-46 |
| MS.gene053887 | MS.gene90819 | 0.807807 | 4.22E-50 | -1.69E-46 |
| MS.gene054343 | MS.gene90819 | -0.800611 | 1.33E-48 | -1.69E-46 |
| MS.gene054344 | MS.gene90819 | -0.826224 | 3.05E-54 | -1.69E-46 |
| MS.gene05470 | MS.gene90819 | -0.850727 | 1.41E-60 | -1.69E-46 |
| MS.gene055251 | MS.gene90819 | 0.870884 | 1.04E-66 | -1.69E-46 |
| MS.gene055616 | MS.gene90819 | 0.802434 | 5.62E-49 | -1.69E-46 |
| MS.gene055729 | MS.gene90819 | 0.806953 | 6.40E-50 | -1.69E-46 |
| MS.gene055748 | MS.gene90819 | -0.810683 | 1.02E-50 | -1.69E-46 |
| MS.gene055751 | MS.gene90819 | -0.817278 | 3.58E-52 | -1.69E-46 |
| MS.gene05589 | MS.gene90819 | -0.869122 | 3.92E-66 | -1.69E-46 |
| MS.gene055977 | MS.gene90819 | 0.810932 | 9.01E-51 | -1.69E-46 |
| MS.gene056266 | MS.gene90819 | -0.86749 | 1.32E-65 | -1.69E-46 |
| MS.gene056354 | MS.gene90819 | 0.806711 | 7.20E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene90819 | -0.820425 | 6.91E-53 | -1.69E-46 |
| MS.gene056694 | MS.gene90819 | 0.860963 | 1.43E-63 | -1.69E-46 |
| MS.gene056697 | MS.gene90819 | 0.828467 | 8.85E-55 | -1.69E-46 |
| MS.gene056856 | MS.gene90819 | 0.810824 | 9.51E-51 | -1.69E-46 |
| MS.gene056988 | MS.gene90819 | 0.807345 | 5.29E-50 | -1.69E-46 |
| MS.gene057607 | MS.gene90819 | 0.815353 | 9.66E-52 | -1.69E-46 |
| MS.gene057768 | MS.gene90819 | 0.819263 | 1.27E-52 | -1.69E-46 |
| MS.gene058015 | MS.gene90819 | 0.812998 | 3.20E-51 | -1.69E-46 |
| MS.gene058068 | MS.gene90819 | 0.800748 | 1.25E-48 | -1.69E-46 |
| MS.gene058334 | MS.gene90819 | 0.835362 | 1.75E-56 | -1.69E-46 |
| MS.gene058382 | MS.gene90819 | 0.834589 | 2.75E-56 | -1.69E-46 |
| MS.gene05926 | MS.gene90819 | 0.818743 | 1.67E-52 | -1.69E-46 |
| MS.gene059304 | MS.gene90819 | 0.804935 | 1.70E-49 | -1.69E-46 |
| MS.gene05960 | MS.gene90819 | 0.812693 | 3.73E-51 | -1.69E-46 |
| MS.gene06000 | MS.gene90819 | -0.809242 | 2.08E-50 | -1.69E-46 |
| MS.gene060076 | MS.gene90819 | 0.851882 | 6.64E-61 | -1.69E-46 |
| MS.gene060077 | MS.gene90819 | 0.803446 | 3.47E-49 | -1.69E-46 |
| MS.gene06033 | MS.gene90819 | 0.827267 | 1.72E-54 | -1.69E-46 |
| MS.gene060405 | MS.gene90819 | 0.80384 | 2.88E-49 | -1.69E-46 |
| MS.gene06042 | MS.gene90819 | 0.82255 | 2.23E-53 | -1.69E-46 |
| MS.gene060593 | MS.gene90819 | 0.802067 | 6.69E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene90819 | -0.805054 | 1.61E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene90819 | -0.803477 | 3.42E-49 | -1.69E-46 |
| MS.gene06084 | MS.gene90819 | 0.802508 | 5.43E-49 | -1.69E-46 |
| MS.gene060982 | MS.gene90819 | -0.830662 | 2.59E-55 | -1.69E-46 |
| MS.gene061044 | MS.gene90819 | 0.905072 | 6.32E-80 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90819.t1 | MTR_1g115850 | 93.750 | 224 | 13 | 1 | 1 | 224 | 1 | 223 | 1.01e-152 | 423 |
| MS.gene90819.t1 | MTR_1g115850 | 90.909 | 231 | 13 | 2 | 1 | 224 | 1 | 230 | 7.66e-150 | 416 |
| MS.gene90819.t1 | MTR_1g115840 | 89.189 | 222 | 24 | 0 | 5 | 226 | 4 | 225 | 6.93e-146 | 406 |
| MS.gene90819.t1 | MTR_1g115820 | 61.538 | 221 | 85 | 0 | 6 | 226 | 2 | 222 | 1.15e-95 | 278 |
| MS.gene90819.t1 | MTR_1g115820 | 62.048 | 166 | 63 | 0 | 6 | 171 | 2 | 167 | 2.61e-74 | 223 |
| MS.gene90819.t1 | MTR_1g115890 | 51.598 | 219 | 104 | 1 | 5 | 221 | 2 | 220 | 9.16e-73 | 221 |
| MS.gene90819.t1 | MTR_1g115870 | 49.528 | 212 | 105 | 1 | 9 | 218 | 6 | 217 | 9.92e-69 | 210 |
| MS.gene90819.t1 | MTR_1g115830 | 51.515 | 165 | 34 | 2 | 62 | 226 | 42 | 160 | 8.78e-50 | 160 |
| MS.gene90819.t1 | MTR_7g027135 | 45.522 | 134 | 71 | 1 | 52 | 183 | 7 | 140 | 8.67e-35 | 121 |
| MS.gene90819.t1 | MTR_3g093980 | 27.317 | 205 | 143 | 4 | 12 | 215 | 26 | 225 | 3.63e-11 | 61.2 |
| MS.gene90819.t1 | MTR_3g093980 | 34.343 | 99 | 61 | 2 | 12 | 110 | 6 | 100 | 6.19e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90819.t1 | AT3G55120 | 49.761 | 209 | 105 | 0 | 9 | 217 | 16 | 224 | 4.62e-67 | 207 |
| MS.gene90819.t1 | AT5G66230 | 45.205 | 219 | 111 | 2 | 9 | 226 | 6 | 216 | 1.62e-52 | 177 |
| MS.gene90819.t1 | AT5G66220 | 45.783 | 166 | 89 | 1 | 62 | 226 | 2 | 167 | 5.18e-43 | 143 |
Find 64 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAACTTAGAGAAGCCTTTA+AGG | 0.168675 | 1.4:+87910483 | MS.gene90819:CDS |
| TTCAGGTATTGTCTCATCTT+TGG | 0.255423 | 1.4:-87910670 | None:intergenic |
| GGTGGAGTTCATTGAATTTC+CGG | 0.261011 | 1.4:+87906219 | MS.gene90819:CDS |
| CAAACACCAAATGGAACATT+AGG | 0.304549 | 1.4:+87910544 | MS.gene90819:CDS |
| ATGTTCCTTCAGATTTCATA+TGG | 0.333432 | 1.4:-87910432 | None:intergenic |
| TCCTATTTCCTTGGTGGTGC+AGG | 0.335100 | 1.4:+87906271 | MS.gene90819:CDS |
| GCCTGCTTTGAAAGAGAGTT+TGG | 0.339202 | 1.4:+87910770 | MS.gene90819:CDS |
| TCTTTCAAAGCAGGCGAAAC+AGG | 0.349240 | 1.4:-87910762 | None:intergenic |
| ACCTGCACCACCAAGGAAAT+AGG | 0.361057 | 1.4:-87906272 | None:intergenic |
| TTTGTGAAGTTCACTGTATT+AGG | 0.371421 | 1.4:+87909812 | MS.gene90819:CDS |
| CACTGTATTAGGAGTTTACT+TGG | 0.384450 | 1.4:+87909823 | MS.gene90819:CDS |
| ATAACAGCATACTCATGTTC+AGG | 0.391503 | 1.4:-87910687 | None:intergenic |
| GTCCCTTTGAGAAATTTATT+CGG | 0.391829 | 1.4:+87910344 | MS.gene90819:CDS |
| AAGATTGACGACTTCAACAT+TGG | 0.399504 | 1.4:+87910816 | MS.gene90819:CDS |
| TATAAACAACAAGCCGCTTT+CGG | 0.408427 | 1.4:+87910707 | MS.gene90819:CDS |
| AAACACCAAATGGAACATTA+GGG | 0.415014 | 1.4:+87910545 | MS.gene90819:CDS |
| CTAACCCCTAATGTTCCATT+TGG | 0.420625 | 1.4:-87910550 | None:intergenic |
| TTCTTCAGACAAACACCAAA+TGG | 0.421941 | 1.4:+87910535 | MS.gene90819:CDS |
| CACCTTCACTCCAGTGATCA+TGG | 0.422784 | 1.4:-87906200 | None:intergenic |
| GGCTTCTCTAAGTTCTTGAA+TGG | 0.424062 | 1.4:-87910476 | None:intergenic |
| GTGAGAGGGTTAGATATTGA+TGG | 0.425916 | 1.4:+87909785 | MS.gene90819:CDS |
| AGGAGTTTACTTGGAAGAAA+AGG | 0.434965 | 1.4:+87909832 | MS.gene90819:CDS |
| ACCAAGTCCTATTTCCTTGG+TGG | 0.442954 | 1.4:+87906265 | MS.gene90819:CDS |
| ATGAAATCTGAAGGAACATA+TGG | 0.443450 | 1.4:+87910436 | MS.gene90819:CDS |
| TCCACCAAGTCCTATTTCCT+TGG | 0.465024 | 1.4:+87906262 | MS.gene90819:CDS |
| GCCGCTTTCGGAGGCAGTGT+TGG | 0.468906 | 1.4:+87910719 | MS.gene90819:CDS |
| AAATAGGACTTGGTGGATGA+TGG | 0.479938 | 1.4:-87906256 | None:intergenic |
| GTTCATTGAATTTCCGGCAG+TGG | 0.480687 | 1.4:+87906225 | MS.gene90819:CDS |
| GATGGAGGTGTCACCACTGC+CGG | 0.484240 | 1.4:-87906238 | None:intergenic |
| AGGTAGTGAATATGTGAGAA+AGG | 0.489997 | 1.4:+87910390 | MS.gene90819:CDS |
| CACCGAATAAATTTCTCAAA+GGG | 0.490589 | 1.4:-87910346 | None:intergenic |
| TGATATCTCGGTAGAAATCA+AGG | 0.490821 | 1.4:-87909913 | None:intergenic |
| GCCAAACTCTCTTTCAAAGC+AGG | 0.514705 | 1.4:-87910771 | None:intergenic |
| AACAGGAATTTCTCCGGTCA+TGG | 0.514747 | 1.4:-87910745 | None:intergenic |
| AGGGATTCAAAGAGCTGAGA+TGG | 0.521295 | 1.4:-87909893 | None:intergenic |
| TGTTCCTTCAGATTTCATAT+GGG | 0.526558 | 1.4:-87910431 | None:intergenic |
| TAGCATCACTTACTCCTAAG+TGG | 0.528607 | 1.4:+87909858 | MS.gene90819:CDS |
| GCAGCAGCATCCATGATCAC+TGG | 0.535344 | 1.4:+87906190 | MS.gene90819:CDS |
| ACCAAGGAAATAGGACTTGG+TGG | 0.536120 | 1.4:-87906263 | None:intergenic |
| ATCACTTACTCCTAAGTGGA+AGG | 0.541188 | 1.4:+87909862 | MS.gene90819:CDS |
| ATCCATGATCACTGGAGTGA+AGG | 0.543867 | 1.4:+87906198 | MS.gene90819:CDS |
| GGAGTCTTGCCCTTCCACTT+AGG | 0.546270 | 1.4:-87909872 | None:intergenic |
| ACAAAGGTGAGAACACTAGA+AGG | 0.549976 | 1.4:+87910370 | MS.gene90819:CDS |
| ACACCGAATAAATTTCTCAA+AGG | 0.550922 | 1.4:-87910347 | None:intergenic |
| TGGTACCTTTGATGATATCT+CGG | 0.556629 | 1.4:-87909925 | None:intergenic |
| CTGAAGAAAACACCAGCCCC+TGG | 0.557559 | 1.4:-87910520 | None:intergenic |
| TAATGGTATGTAGGGGTGAG+AGG | 0.559143 | 1.4:+87909770 | MS.gene90819:intron |
| CATGATCACTGGAGTGAAGG+TGG | 0.559960 | 1.4:+87906201 | MS.gene90819:CDS |
| GCAGTGTTGGAGACCATGAC+CGG | 0.572482 | 1.4:+87910732 | MS.gene90819:CDS |
| AGGCGAAACAGGAATTTCTC+CGG | 0.576812 | 1.4:-87910751 | None:intergenic |
| GAAATTTATTCGGTGTACAA+AGG | 0.581570 | 1.4:+87910354 | MS.gene90819:CDS |
| TCCAACACTGCCTCCGAAAG+CGG | 0.582725 | 1.4:-87910720 | None:intergenic |
| AATGGTATGTAGGGGTGAGA+GGG | 0.586252 | 1.4:+87909771 | MS.gene90819:intron |
| ACCACCAAGGAAATAGGACT+TGG | 0.610116 | 1.4:-87906266 | None:intergenic |
| TTCTACCGAGATATCATCAA+AGG | 0.610658 | 1.4:+87909920 | MS.gene90819:CDS |
| ATTGCCCATATGAAATCTGA+AGG | 0.611017 | 1.4:+87910427 | MS.gene90819:CDS |
| AAACAACAAGCCGCTTTCGG+AGG | 0.621155 | 1.4:+87910710 | MS.gene90819:CDS |
| TAGGACTTGGTGGATGATGG+AGG | 0.628115 | 1.4:-87906253 | None:intergenic |
| GATATCTCGGTAGAAATCAA+GGG | 0.631456 | 1.4:-87909912 | None:intergenic |
| AAGAAAACACCAGCCCCTGG+TGG | 0.637698 | 1.4:-87910517 | None:intergenic |
| TCACTTACTCCTAAGTGGAA+GGG | 0.638389 | 1.4:+87909863 | MS.gene90819:CDS |
| AAGAAATACCTGCACCACCA+AGG | 0.648491 | 1.4:-87906279 | None:intergenic |
| ATAGCTATAAGCTATGGCAA+AGG | 0.662193 | 1.4:+87906168 | None:intergenic |
| AACACCAAATGGAACATTAG+GGG | 0.677472 | 1.4:+87910546 | MS.gene90819:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTATTATTATTTTTT+GGG | - | chr1.4:87909005-87909024 | None:intergenic | 0.0% |
| !!! | TTTTTATTATTATTATTTTT+TGG | - | chr1.4:87909006-87909025 | None:intergenic | 0.0% |
| !! | AATTACAGATATAAAAAATA+AGG | + | chr1.4:87908799-87908818 | MS.gene90819:intron | 10.0% |
| !! | ATCAAAACTTTATAAAAAAA+AGG | + | chr1.4:87908341-87908360 | MS.gene90819:intron | 10.0% |
| !! | ATTACAGATATAAAAAATAA+GGG | + | chr1.4:87908800-87908819 | MS.gene90819:intron | 10.0% |
| !! | TCAAAACTTTATAAAAAAAA+GGG | + | chr1.4:87908342-87908361 | MS.gene90819:intron | 10.0% |
| !! | TCTAATAATTAATATATAAC+AGG | + | chr1.4:87906917-87906936 | MS.gene90819:intron | 10.0% |
| !!! | AAAAAAAAAAAAAGTCTTTT+TGG | - | chr1.4:87907688-87907707 | None:intergenic | 10.0% |
| !!! | AAAAATAAATCTTTTTTATG+AGG | - | chr1.4:87907099-87907118 | None:intergenic | 10.0% |
| !! | AATGTATACTCATTTATATA+TGG | + | chr1.4:87910311-87910330 | MS.gene90819:intron | 15.0% |
| !! | ATGTATACTCATTTATATAT+GGG | + | chr1.4:87910312-87910331 | MS.gene90819:intron | 15.0% |
| !! | ATGTCTAATTAAAAAATTGA+GGG | + | chr1.4:87909222-87909241 | MS.gene90819:intron | 15.0% |
| !! | CATCTTACATTATTATATAA+AGG | - | chr1.4:87907981-87908000 | None:intergenic | 15.0% |
| !! | CTTACCTAAAAAAAAAAAAA+AGG | - | chr1.4:87907927-87907946 | None:intergenic | 15.0% |
| !! | TATCAAAATATAATGTAATG+TGG | - | chr1.4:87907238-87907257 | None:intergenic | 15.0% |
| !! | TATGTCTAATTAAAAAATTG+AGG | + | chr1.4:87909221-87909240 | MS.gene90819:intron | 15.0% |
| !! | TCAAATATAAATATAAGTAG+CGG | - | chr1.4:87907859-87907878 | None:intergenic | 15.0% |
| !! | TTATACATTAACAATCTAAT+AGG | + | chr1.4:87907208-87907227 | MS.gene90819:intron | 15.0% |
| !!! | AAAAGAATATTTCTATTTCT+GGG | - | chr1.4:87908864-87908883 | None:intergenic | 15.0% |
| !!! | AAACATTTTCTTCTTTTTTA+TGG | - | chr1.4:87907389-87907408 | None:intergenic | 15.0% |
| !!! | AACAATAGTTTTTATTGATA+TGG | - | chr1.4:87908239-87908258 | None:intergenic | 15.0% |
| !!! | AATTTTGATGGTTTTTTTTA+GGG | - | chr1.4:87909296-87909315 | None:intergenic | 15.0% |
| !!! | ACAATAGTTTTTATTGATAT+GGG | - | chr1.4:87908238-87908257 | None:intergenic | 15.0% |
| !!! | AGAACCTTTTTTTTTTTTTT+AGG | + | chr1.4:87907920-87907939 | MS.gene90819:intron | 15.0% |
| !!! | GATATTTTAATAAACCTTAA+GGG | + | chr1.4:87909254-87909273 | MS.gene90819:intron | 15.0% |
| !!! | TAAAAGAATATTTCTATTTC+TGG | - | chr1.4:87908865-87908884 | None:intergenic | 15.0% |
| !!! | TGATATTTTAATAAACCTTA+AGG | + | chr1.4:87909253-87909272 | MS.gene90819:intron | 15.0% |
| !!! | TTAAAATGTGTTGATTAAAT+TGG | - | chr1.4:87910612-87910631 | None:intergenic | 15.0% |
| !!! | TTTTATTGATCATTCTTTTT+AGG | - | chr1.4:87906846-87906865 | None:intergenic | 15.0% |
| !! | AAACATACTTAAAGTAAGTT+TGG | + | chr1.4:87907658-87907677 | MS.gene90819:intron | 20.0% |
| !! | AAATCTTACTTTCATAAGTT+TGG | - | chr1.4:87906948-87906967 | None:intergenic | 20.0% |
| !! | AATCTTTAACAAATGTCATA+TGG | + | chr1.4:87906798-87906817 | MS.gene90819:intron | 20.0% |
| !! | ACTCTATTGATATTAATATG+AGG | - | chr1.4:87908035-87908054 | None:intergenic | 20.0% |
| !! | ATAACCATGATTTATCTAAA+AGG | + | chr1.4:87909470-87909489 | MS.gene90819:intron | 20.0% |
| !! | ATAGATATACAATCAAAAAC+TGG | - | chr1.4:87908772-87908791 | None:intergenic | 20.0% |
| !! | ATCTTTAACAAATGTCATAT+GGG | + | chr1.4:87906799-87906818 | MS.gene90819:intron | 20.0% |
| !! | ATTATAGATAATTACAACGA+GGG | + | chr1.4:87907026-87907045 | MS.gene90819:intron | 20.0% |
| !! | GAAAATCATGGAAAAATATT+GGG | + | chr1.4:87909632-87909651 | MS.gene90819:intron | 20.0% |
| !! | GATATTTAGATACATGAAAT+AGG | - | chr1.4:87910590-87910609 | None:intergenic | 20.0% |
| !! | TATCATTATGTAGTATATGT+TGG | - | chr1.4:87909948-87909967 | None:intergenic | 20.0% |
| !! | TGAAAATCATGGAAAAATAT+TGG | + | chr1.4:87909631-87909650 | MS.gene90819:intron | 20.0% |
| !! | TGTCTAATTAAAAAATTGAG+GGG | + | chr1.4:87909223-87909242 | MS.gene90819:intron | 20.0% |
| !! | TTTACCTTAAATTCCTTTAA+CGG | + | chr1.4:87908546-87908565 | MS.gene90819:intron | 20.0% |
| !!! | ACTGTTTTTTTAAAACTAGA+GGG | - | chr1.4:87908416-87908435 | None:intergenic | 20.0% |
| !!! | ATAAATCTTTTTTATGAGGT+CGG | - | chr1.4:87907095-87907114 | None:intergenic | 20.0% |
| !!! | ATGGATATTTTAAAAAGTCA+CGG | + | chr1.4:87907741-87907760 | MS.gene90819:intron | 20.0% |
| !!! | CAATTTTGATGGTTTTTTTT+AGG | - | chr1.4:87909297-87909316 | None:intergenic | 20.0% |
| !!! | GATGTTTTTTTTATTGCTAA+TGG | + | chr1.4:87909753-87909772 | MS.gene90819:intron | 20.0% |
| !!! | TTTTCCATGATTTTCATTTT+CGG | - | chr1.4:87909627-87909646 | None:intergenic | 20.0% |
| ! | AAAAAAAAGAGGACATAACA+AGG | + | chr1.4:87909021-87909040 | MS.gene90819:intron | 25.0% |
| ! | AAAGTTCATCTATTAGTTAG+AGG | - | chr1.4:87906893-87906912 | None:intergenic | 25.0% |
| ! | AAGTTCATCTATTAGTTAGA+GGG | - | chr1.4:87906892-87906911 | None:intergenic | 25.0% |
| ! | AATTTCAAGGGAAATATAGT+GGG | + | chr1.4:87909044-87909063 | MS.gene90819:intron | 25.0% |
| ! | ACATGCTAACTATAATTCAT+TGG | - | chr1.4:87910212-87910231 | None:intergenic | 25.0% |
| ! | ATTTATATATGGGTGTGTTT+AGG | + | chr1.4:87910322-87910341 | MS.gene90819:intron | 25.0% |
| ! | CAATCCAATGCAAAATTTAA+CGG | + | chr1.4:87908155-87908174 | MS.gene90819:intron | 25.0% |
| ! | GATTATAGATAATTACAACG+AGG | + | chr1.4:87907025-87907044 | MS.gene90819:intron | 25.0% |
| ! | GTCTAATTAAAAAATTGAGG+GGG | + | chr1.4:87909224-87909243 | MS.gene90819:intron | 25.0% |
| ! | GTTGTTTAATAAAACCTCAA+GGG | - | chr1.4:87908384-87908403 | None:intergenic | 25.0% |
| ! | TATTTACAGTCACATACAAT+AGG | - | chr1.4:87908279-87908298 | None:intergenic | 25.0% |
| ! | TCTTTAACAAATGTCATATG+GGG | + | chr1.4:87906800-87906819 | MS.gene90819:intron | 25.0% |
| ! | TGGAAAAAATTGAACCTTAA+AGG | - | chr1.4:87910500-87910519 | None:intergenic | 25.0% |
| ! | TTAAGTATGTTTGATCTCAT+CGG | - | chr1.4:87907650-87907669 | None:intergenic | 25.0% |
| ! | TTACCTTAAATTCCTTTAAC+GGG | + | chr1.4:87908547-87908566 | MS.gene90819:intron | 25.0% |
| ! | TTCCATAACATTATTGATGT+AGG | + | chr1.4:87910010-87910029 | MS.gene90819:intron | 25.0% |
| ! | TTCCTACATCAATAATGTTA+TGG | - | chr1.4:87910015-87910034 | None:intergenic | 25.0% |
| ! | TTGAAATGAAAGTTACGTAA+TGG | - | chr1.4:87908576-87908595 | None:intergenic | 25.0% |
| ! | TTTATTGCTAATGGTATGTA+GGG | + | chr1.4:87909762-87909781 | MS.gene90819:intron | 25.0% |
| !! | CAAATGTAGAAAGTTTTTGT+TGG | - | chr1.4:87908943-87908962 | None:intergenic | 25.0% |
| !! | TCAACCTTTTAGATAAATCA+TGG | - | chr1.4:87909477-87909496 | None:intergenic | 25.0% |
| !! | TGAATACACAATTCTAAAGA+TGG | - | chr1.4:87906715-87906734 | None:intergenic | 25.0% |
| !! | TGTTGTTTAATAAAACCTCA+AGG | - | chr1.4:87908385-87908404 | None:intergenic | 25.0% |
| !! | TTTTATTGCTAATGGTATGT+AGG | + | chr1.4:87909761-87909780 | MS.gene90819:intron | 25.0% |
| !!! | ATTTTAATAAACCTTAAGGG+AGG | + | chr1.4:87909257-87909276 | MS.gene90819:intron | 25.0% |
| !!! | CTGTTTTTTTAAAACTAGAG+GGG | - | chr1.4:87908415-87908434 | None:intergenic | 25.0% |
| !!! | GACTGTTTTTTTAAAACTAG+AGG | - | chr1.4:87908417-87908436 | None:intergenic | 25.0% |
| !!! | TGTTTTTTTAAAACTAGAGG+GGG | - | chr1.4:87908414-87908433 | None:intergenic | 25.0% |
| !!! | TTCTTCCTCAATTTTTGAAA+CGG | - | chr1.4:87909108-87909127 | None:intergenic | 25.0% |
| AAACACCAAATGGAACATTA+GGG | + | chr1.4:87910545-87910564 | MS.gene90819:CDS | 30.0% | |
| AAACCCGTTAAAGGAATTTA+AGG | - | chr1.4:87908553-87908572 | None:intergenic | 30.0% | |
| AAACTTACCTATCACTATCA+TGG | + | chr1.4:87907569-87907588 | MS.gene90819:intron | 30.0% | |
| AACCCCTAAATCAAATATTG+AGG | + | chr1.4:87909541-87909560 | MS.gene90819:intron | 30.0% | |
| AACTCATATGGTGTTTAATC+TGG | + | chr1.4:87906990-87907009 | MS.gene90819:intron | 30.0% | |
| ACAACTGCAAATGCAATTTA+AGG | + | chr1.4:87910252-87910271 | MS.gene90819:intron | 30.0% | |
| ACAAGTGATTGAGTAGTATT+AGG | - | chr1.4:87909411-87909430 | None:intergenic | 30.0% | |
| ACACCGAATAAATTTCTCAA+AGG | - | chr1.4:87910350-87910369 | None:intergenic | 30.0% | |
| ACCCCTAAATCAAATATTGA+GGG | + | chr1.4:87909542-87909561 | MS.gene90819:intron | 30.0% | |
| AGGTAAAAATGCAAAAGCTA+CGG | - | chr1.4:87908533-87908552 | None:intergenic | 30.0% | |
| ATAAATCATGGTTATCTCGA+GGG | - | chr1.4:87909465-87909484 | None:intergenic | 30.0% | |
| ATGAAATCTGAAGGAACATA+TGG | + | chr1.4:87910436-87910455 | MS.gene90819:CDS | 30.0% | |
| ATGTTCCTTCAGATTTCATA+TGG | - | chr1.4:87910435-87910454 | None:intergenic | 30.0% | |
| CACCGAATAAATTTCTCAAA+GGG | - | chr1.4:87910349-87910368 | None:intergenic | 30.0% | |
| CTGAACAATTCATAGTTCTT+TGG | + | chr1.4:87906621-87906640 | MS.gene90819:intron | 30.0% | |
| GAATTTCAAGGGAAATATAG+TGG | + | chr1.4:87909043-87909062 | MS.gene90819:intron | 30.0% | |
| GACATAACAAGGAATTTCAA+GGG | + | chr1.4:87909032-87909051 | MS.gene90819:intron | 30.0% | |
| GTTTCGTGAGGAAATAATTT+GGG | - | chr1.4:87907537-87907556 | None:intergenic | 30.0% | |
| TAATATGAGGAAGATTTGTG+CGG | - | chr1.4:87908022-87908041 | None:intergenic | 30.0% | |
| TCGTGAATGTTTCATGAATA+TGG | + | chr1.4:87908189-87908208 | MS.gene90819:intron | 30.0% | |
| TGTTCCTTCAGATTTCATAT+GGG | - | chr1.4:87910434-87910453 | None:intergenic | 30.0% | |
| TGTTTCGTGAGGAAATAATT+TGG | - | chr1.4:87907538-87907557 | None:intergenic | 30.0% | |
| TTATTGCTAATGGTATGTAG+GGG | + | chr1.4:87909763-87909782 | MS.gene90819:intron | 30.0% | |
| TTTAATCTGGTAAGTATGGT+GGG | + | chr1.4:87907003-87907022 | MS.gene90819:intron | 30.0% | |
| TTTGTGAAGTTCACTGTATT+AGG | + | chr1.4:87909812-87909831 | MS.gene90819:CDS | 30.0% | |
| ! | AGTCCCTCAATATTTGATTT+AGG | - | chr1.4:87909548-87909567 | None:intergenic | 30.0% |
| ! | CTTATAATGTTTTCACTGCT+AGG | + | chr1.4:87906334-87906353 | MS.gene90819:intron | 30.0% |
| ! | GTCCCTCAATATTTGATTTA+GGG | - | chr1.4:87909547-87909566 | None:intergenic | 30.0% |
| ! | GTCCCTTTGAGAAATTTATT+CGG | + | chr1.4:87910344-87910363 | MS.gene90819:CDS | 30.0% |
| ! | TCCCTCAATATTTGATTTAG+GGG | - | chr1.4:87909546-87909565 | None:intergenic | 30.0% |
| ! | TCTTTCTTTTCTTTCTTCCA+CGG | - | chr1.4:87909075-87909094 | None:intergenic | 30.0% |
| !! | GAAATTTATTCGGTGTACAA+AGG | + | chr1.4:87910354-87910373 | MS.gene90819:CDS | 30.0% |
| !!! | GCATGACTTTTTTAGTTGAA+TGG | + | chr1.4:87907722-87907741 | MS.gene90819:intron | 30.0% |
| !!! | TGATTGAAGCATTGCTTTTA+TGG | + | chr1.4:87909702-87909721 | MS.gene90819:intron | 30.0% |
| AAATAGTGTTCCATCACAAC+GGG | + | chr1.4:87906492-87906511 | MS.gene90819:intron | 35.0% | |
| AACACCAAATGGAACATTAG+GGG | + | chr1.4:87910546-87910565 | MS.gene90819:CDS | 35.0% | |
| AAGATTGACGACTTCAACAT+TGG | + | chr1.4:87910816-87910835 | MS.gene90819:CDS | 35.0% | |
| AATTATATTGACCTCCCTTG+AGG | + | chr1.4:87908367-87908386 | MS.gene90819:intron | 35.0% | |
| ACACCATATGAGTTCTTCAA+AGG | - | chr1.4:87906984-87907003 | None:intergenic | 35.0% | |
| ACTAACACCGTTAACTTTGA+AGG | - | chr1.4:87908445-87908464 | None:intergenic | 35.0% | |
| ACTGCCGAAAATGAAAATCA+TGG | + | chr1.4:87909620-87909639 | MS.gene90819:intron | 35.0% | |
| AGAACTTAGAGAAGCCTTTA+AGG | + | chr1.4:87910483-87910502 | MS.gene90819:CDS | 35.0% | |
| AGGAGTTTACTTGGAAGAAA+AGG | + | chr1.4:87909832-87909851 | MS.gene90819:CDS | 35.0% | |
| AGGGATCAATAAGTCATTAG+AGG | - | chr1.4:87909446-87909465 | None:intergenic | 35.0% | |
| AGGTAGTGAATATGTGAGAA+AGG | + | chr1.4:87910390-87910409 | MS.gene90819:CDS | 35.0% | |
| AGTAGCGGTGAAAATAAGTT+CGG | - | chr1.4:87907844-87907863 | None:intergenic | 35.0% | |
| ATAACAGCATACTCATGTTC+AGG | - | chr1.4:87910690-87910709 | None:intergenic | 35.0% | |
| ATCACATTGAGGATTGAGTA+GGG | + | chr1.4:87909192-87909211 | MS.gene90819:intron | 35.0% | |
| ATGAGCGGATCATGATAAAA+AGG | - | chr1.4:87908130-87908149 | None:intergenic | 35.0% | |
| ATTGCCCATATGAAATCTGA+AGG | + | chr1.4:87910427-87910446 | MS.gene90819:CDS | 35.0% | |
| CAAACAATGTTAACCAAGAG+GGG | + | chr1.4:87909161-87909180 | MS.gene90819:intron | 35.0% | |
| CAAACACCAAATGGAACATT+AGG | + | chr1.4:87910544-87910563 | MS.gene90819:CDS | 35.0% | |
| CACTGTATTAGGAGTTTACT+TGG | + | chr1.4:87909823-87909842 | MS.gene90819:CDS | 35.0% | |
| CATGTTATCTTATGCCCTAA+GGG | + | chr1.4:87908824-87908843 | MS.gene90819:intron | 35.0% | |
| CATTGGATTGAATACATGAG+CGG | - | chr1.4:87908145-87908164 | None:intergenic | 35.0% | |
| CTAACACCGTTAACTTTGAA+GGG | - | chr1.4:87908444-87908463 | None:intergenic | 35.0% | |
| CTTGCACATATACTGTTGAA+TGG | + | chr1.4:87910139-87910158 | MS.gene90819:intron | 35.0% | |
| GAAATAGTGTTCCATCACAA+CGG | + | chr1.4:87906491-87906510 | MS.gene90819:intron | 35.0% | |
| GATAAATCATGGTTATCTCG+AGG | - | chr1.4:87909466-87909485 | None:intergenic | 35.0% | |
| GATATCTCGGTAGAAATCAA+GGG | - | chr1.4:87909915-87909934 | None:intergenic | 35.0% | |
| GCAAACAATGTTAACCAAGA+GGG | + | chr1.4:87909160-87909179 | MS.gene90819:intron | 35.0% | |
| GGACATAACAAGGAATTTCA+AGG | + | chr1.4:87909031-87909050 | MS.gene90819:intron | 35.0% | |
| GGTGTTTAATCTGGTAAGTA+TGG | + | chr1.4:87906999-87907018 | MS.gene90819:intron | 35.0% | |
| GTTTAATAAAACCTCAAGGG+AGG | - | chr1.4:87908381-87908400 | None:intergenic | 35.0% | |
| GTTTAATCTGGTAAGTATGG+TGG | + | chr1.4:87907002-87907021 | MS.gene90819:intron | 35.0% | |
| TATCACATTGAGGATTGAGT+AGG | + | chr1.4:87909191-87909210 | MS.gene90819:intron | 35.0% | |
| TATTCTATATCCCGTTGTGA+TGG | - | chr1.4:87906505-87906524 | None:intergenic | 35.0% | |
| TCATGTGCTAAGAAGTTAAG+AGG | - | chr1.4:87908510-87908529 | None:intergenic | 35.0% | |
| TCATGTTATCTTATGCCCTA+AGG | + | chr1.4:87908823-87908842 | MS.gene90819:intron | 35.0% | |
| TGAAGACGTAAGCATGAAAT+AGG | - | chr1.4:87907171-87907190 | None:intergenic | 35.0% | |
| TGAGCGGATCATGATAAAAA+GGG | - | chr1.4:87908129-87908148 | None:intergenic | 35.0% | |
| TGATATCTCGGTAGAAATCA+AGG | - | chr1.4:87909916-87909935 | None:intergenic | 35.0% | |
| TGCAAACAATGTTAACCAAG+AGG | + | chr1.4:87909159-87909178 | MS.gene90819:intron | 35.0% | |
| TTATTTCCTCACGAAACATC+AGG | + | chr1.4:87907540-87907559 | MS.gene90819:intron | 35.0% | |
| TTCGGCCTTACAAAATGTTA+GGG | + | chr1.4:87906465-87906484 | MS.gene90819:intron | 35.0% | |
| TTCTACCGAGATATCATCAA+AGG | + | chr1.4:87909920-87909939 | MS.gene90819:CDS | 35.0% | |
| TTCTTCAGACAAACACCAAA+TGG | + | chr1.4:87910535-87910554 | MS.gene90819:CDS | 35.0% | |
| TTTCGGCCTTACAAAATGTT+AGG | + | chr1.4:87906464-87906483 | MS.gene90819:intron | 35.0% | |
| ! | ACACACAAGTGTATTTGTTG+CGG | + | chr1.4:87908099-87908118 | MS.gene90819:intron | 35.0% |
| ! | CAAAATCCTTAACGGCTTTT+CGG | + | chr1.4:87906447-87906466 | MS.gene90819:intron | 35.0% |
| ! | CTTCAGTATCGAATTTAGTG+AGG | + | chr1.4:87906421-87906440 | MS.gene90819:intron | 35.0% |
| ! | CTTCCTTTGAAGAACTCATA+TGG | + | chr1.4:87906978-87906997 | MS.gene90819:intron | 35.0% |
| ! | GAAGCCGTTAAATTTTGCAT+TGG | - | chr1.4:87908162-87908181 | None:intergenic | 35.0% |
| ! | TATAAACAACAAGCCGCTTT+CGG | + | chr1.4:87910707-87910726 | MS.gene90819:CDS | 35.0% |
| ! | TGAGGTACCAAAATCCTTAA+CGG | + | chr1.4:87906439-87906458 | MS.gene90819:intron | 35.0% |
| ! | TGGTACCTTTGATGATATCT+CGG | - | chr1.4:87909928-87909947 | None:intergenic | 35.0% |
| ! | TTCAGGTATTGTCTCATCTT+TGG | - | chr1.4:87910673-87910692 | None:intergenic | 35.0% |
| !! | AATGTTAACTTGTGCCCTTA+AGG | - | chr1.4:87908981-87909000 | None:intergenic | 35.0% |
| !! | ACACATTAACTTGTGCCTTA+AGG | + | chr1.4:87908963-87908982 | MS.gene90819:intron | 35.0% |
| !! | CACATTAACTTGTGCCTTAA+GGG | + | chr1.4:87908964-87908983 | MS.gene90819:intron | 35.0% |
| !! | GCTTACACAAACTTGTTGAA+AGG | - | chr1.4:87908639-87908658 | None:intergenic | 35.0% |
| !! | TGTGGCTCTATCAATTTTGA+TGG | - | chr1.4:87909308-87909327 | None:intergenic | 35.0% |
| !!! | AAGGTTCAATTTTTTCCACC+AGG | + | chr1.4:87910502-87910521 | MS.gene90819:CDS | 35.0% |
| !!! | AGGTTCAATTTTTTCCACCA+GGG | + | chr1.4:87910503-87910522 | MS.gene90819:CDS | 35.0% |
| ACAAAGGTGAGAACACTAGA+AGG | + | chr1.4:87910370-87910389 | MS.gene90819:CDS | 40.0% | |
| AGAGGGGAAATGAATTCGTT+TGG | - | chr1.4:87908691-87908710 | None:intergenic | 40.0% | |
| ATCACTTACTCCTAAGTGGA+AGG | + | chr1.4:87909862-87909881 | MS.gene90819:CDS | 40.0% | |
| CTAACCCCTAATGTTCCATT+TGG | - | chr1.4:87910553-87910572 | None:intergenic | 40.0% | |
| CTTCTGTAGTGACAACACTT+TGG | + | chr1.4:87908737-87908756 | MS.gene90819:intron | 40.0% | |
| GAGCGGATCATGATAAAAAG+GGG | - | chr1.4:87908128-87908147 | None:intergenic | 40.0% | |
| GCAAAACTATGGTACTAGAG+GGG | - | chr1.4:87908707-87908726 | None:intergenic | 40.0% | |
| GCCTTACAAAATGTTAGGGA+GGG | + | chr1.4:87906469-87906488 | MS.gene90819:intron | 40.0% | |
| GGCAAAACTATGGTACTAGA+GGG | - | chr1.4:87908708-87908727 | None:intergenic | 40.0% | |
| GGCTTCTCTAAGTTCTTGAA+TGG | - | chr1.4:87910479-87910498 | None:intergenic | 40.0% | |
| GGTGGAGTTCATTGAATTTC+CGG | + | chr1.4:87906219-87906238 | MS.gene90819:CDS | 40.0% | |
| GTGACAGAATTTATGTGCGT+CGG | - | chr1.4:87906393-87906412 | None:intergenic | 40.0% | |
| GTGAGAGGGTTAGATATTGA+TGG | + | chr1.4:87909785-87909804 | MS.gene90819:CDS | 40.0% | |
| TAGCATCACTTACTCCTAAG+TGG | + | chr1.4:87909858-87909877 | MS.gene90819:CDS | 40.0% | |
| TCACATTGAGGATTGAGTAG+GGG | + | chr1.4:87909193-87909212 | MS.gene90819:intron | 40.0% | |
| TCACCTCCCTTCAAAGTTAA+CGG | + | chr1.4:87908435-87908454 | MS.gene90819:intron | 40.0% | |
| TCACTTACTCCTAAGTGGAA+GGG | + | chr1.4:87909863-87909882 | MS.gene90819:CDS | 40.0% | |
| TGACAGAATTTATGTGCGTC+GGG | - | chr1.4:87906392-87906411 | None:intergenic | 40.0% | |
| TGGCAAAACTATGGTACTAG+AGG | - | chr1.4:87908709-87908728 | None:intergenic | 40.0% | |
| TTGCTTAACATGTGCCCTTA+GGG | - | chr1.4:87908841-87908860 | None:intergenic | 40.0% | |
| ! | AATTGCATTGACCTCCCTTA+AGG | - | chr1.4:87909271-87909290 | None:intergenic | 40.0% |
| ! | ACGTAATGGAAACCCGTTAA+AGG | - | chr1.4:87908562-87908581 | None:intergenic | 40.0% |
| ! | AGAGGGAGTCAGTGAATTTT+AGG | - | chr1.4:87906875-87906894 | None:intergenic | 40.0% |
| ! | CACACAAGTGTATTTGTTGC+GGG | + | chr1.4:87908100-87908119 | MS.gene90819:intron | 40.0% |
| ! | CGAAAAGCCGTTAAGGATTT+TGG | - | chr1.4:87906449-87906468 | None:intergenic | 40.0% |
| ! | TCCCTCCCTAACATTTTGTA+AGG | - | chr1.4:87906473-87906492 | None:intergenic | 40.0% |
| ! | TGCTGCCGTTTCAAAAATTG+AGG | + | chr1.4:87909100-87909119 | MS.gene90819:intron | 40.0% |
| ! | TTCAAGGGAAATATAGTGGG+TGG | + | chr1.4:87909047-87909066 | MS.gene90819:intron | 40.0% |
| !! | AAATAGGACTTGGTGGATGA+TGG | - | chr1.4:87906259-87906278 | None:intergenic | 40.0% |
| !! | CAAAGTGTTGTCACTACAGA+AGG | - | chr1.4:87908739-87908758 | None:intergenic | 40.0% |
| !!! | GGTTCAATTTTTTCCACCAG+GGG | + | chr1.4:87910504-87910523 | MS.gene90819:CDS | 40.0% |
| AACAGGAATTTCTCCGGTCA+TGG | - | chr1.4:87910748-87910767 | None:intergenic | 45.0% | |
| AAGAAATACCTGCACCACCA+AGG | - | chr1.4:87906282-87906301 | None:intergenic | 45.0% | |
| AATGGTATGTAGGGGTGAGA+GGG | + | chr1.4:87909771-87909790 | MS.gene90819:intron | 45.0% | |
| ACAATGTTAACCAAGAGGGG+AGG | + | chr1.4:87909164-87909183 | MS.gene90819:intron | 45.0% | |
| ACCAAGGAAATAGGACTTGG+TGG | - | chr1.4:87906266-87906285 | None:intergenic | 45.0% | |
| ACCAAGTCCTATTTCCTTGG+TGG | + | chr1.4:87906265-87906284 | MS.gene90819:CDS | 45.0% | |
| ACCACCAAGGAAATAGGACT+TGG | - | chr1.4:87906269-87906288 | None:intergenic | 45.0% | |
| AGGCGAAACAGGAATTTCTC+CGG | - | chr1.4:87910754-87910773 | None:intergenic | 45.0% | |
| AGGGATTCAAAGAGCTGAGA+TGG | - | chr1.4:87909896-87909915 | None:intergenic | 45.0% | |
| ATCCATGATCACTGGAGTGA+AGG | + | chr1.4:87906198-87906217 | MS.gene90819:CDS | 45.0% | |
| CCACATAAGTGCATATGCAG+TGG | + | chr1.4:87909323-87909342 | MS.gene90819:intron | 45.0% | |
| CCACTGCATATGCACTTATG+TGG | - | chr1.4:87909326-87909345 | None:intergenic | 45.0% | |
| CCTATCACTATCATGGTGTG+TGG | + | chr1.4:87907576-87907595 | MS.gene90819:intron | 45.0% | |
| GACAGAATTTATGTGCGTCG+GGG | - | chr1.4:87906391-87906410 | None:intergenic | 45.0% | |
| GCCAAACTCTCTTTCAAAGC+AGG | - | chr1.4:87910774-87910793 | None:intergenic | 45.0% | |
| GGCCTTACAAAATGTTAGGG+AGG | + | chr1.4:87906468-87906487 | MS.gene90819:intron | 45.0% | |
| GGTGCATGATGGCAAAACTA+TGG | - | chr1.4:87908718-87908737 | None:intergenic | 45.0% | |
| GTTCATTGAATTTCCGGCAG+TGG | + | chr1.4:87906225-87906244 | MS.gene90819:CDS | 45.0% | |
| GTTGCTTAACATGTGCCCTT+AGG | - | chr1.4:87908842-87908861 | None:intergenic | 45.0% | |
| TAATGGTATGTAGGGGTGAG+AGG | + | chr1.4:87909770-87909789 | MS.gene90819:intron | 45.0% | |
| TCCACCAAGTCCTATTTCCT+TGG | + | chr1.4:87906262-87906281 | MS.gene90819:CDS | 45.0% | |
| TCTTTCAAAGCAGGCGAAAC+AGG | - | chr1.4:87910765-87910784 | None:intergenic | 45.0% | |
| ! | ACACCGTTAACTTTGAAGGG+AGG | - | chr1.4:87908441-87908460 | None:intergenic | 45.0% |
| ! | CCACACACCATGATAGTGAT+AGG | - | chr1.4:87907579-87907598 | None:intergenic | 45.0% |
| ! | TCACTACAGAAGGTGCATGA+TGG | - | chr1.4:87908729-87908748 | None:intergenic | 45.0% |
| !! | AAATATAGTGGGTGGAACCG+TGG | + | chr1.4:87909055-87909074 | MS.gene90819:intron | 45.0% |
| !! | GCCTGCTTTGAAAGAGAGTT+TGG | + | chr1.4:87910770-87910789 | MS.gene90819:CDS | 45.0% |
| !! | GGGAGGTGTTTATCACATTG+AGG | + | chr1.4:87909181-87909200 | MS.gene90819:intron | 45.0% |
| !!! | TTGTGCGGTGCTACAGTTTT+GGG | - | chr1.4:87908007-87908026 | None:intergenic | 45.0% |
| !!! | TTTGTGCGGTGCTACAGTTT+TGG | - | chr1.4:87908008-87908027 | None:intergenic | 45.0% |
| !! | AAAAAATAAAACAAATTATT+AGG | - | chr1.4:87909978-87909997 | None:intergenic | 5.0% |
| !! | ATAATAATAATAAAAAAAAG+AGG | + | chr1.4:87909010-87909029 | MS.gene90819:intron | 5.0% |
| !! | TAAAAATATATAATTGAAAT+AGG | - | chr1.4:87907300-87907319 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTTAAAAAAACA+TGG | + | chr1.4:87907779-87907798 | MS.gene90819:intron | 5.0% |
| !!! | TAGATTTTTTTTTTTTTTTT+AGG | - | chr1.4:87909371-87909390 | None:intergenic | 5.0% |
| ACCTGCACCACCAAGGAAAT+AGG | - | chr1.4:87906275-87906294 | None:intergenic | 50.0% | |
| CACCTTCACTCCAGTGATCA+TGG | - | chr1.4:87906203-87906222 | None:intergenic | 50.0% | |
| CATGATCACTGGAGTGAAGG+TGG | + | chr1.4:87906201-87906220 | MS.gene90819:CDS | 50.0% | |
| CATTGAGGATTGAGTAGGGG+AGG | + | chr1.4:87909196-87909215 | MS.gene90819:intron | 50.0% | |
| GTAAGGCCGAAAAGCCGTTA+AGG | - | chr1.4:87906456-87906475 | None:intergenic | 50.0% | |
| GTGATAAACACCTCCCCTCT+TGG | - | chr1.4:87909177-87909196 | None:intergenic | 50.0% | |
| TACTCTCGTGAGAGAGGTTG+TGG | - | chr1.4:87908072-87908091 | None:intergenic | 50.0% | |
| TCGAGTCCTGATGTTTCGTG+AGG | - | chr1.4:87907549-87907568 | None:intergenic | 50.0% | |
| TCGTGATACTCTCGTGAGAG+AGG | - | chr1.4:87908078-87908097 | None:intergenic | 50.0% | |
| ! | AAACAACAAGCCGCTTTCGG+AGG | + | chr1.4:87910710-87910729 | MS.gene90819:CDS | 50.0% |
| !! | TAGGACTTGGTGGATGATGG+AGG | - | chr1.4:87906256-87906275 | None:intergenic | 50.0% |
| !! | TCCTATTTCCTTGGTGGTGC+AGG | + | chr1.4:87906271-87906290 | MS.gene90819:CDS | 50.0% |
| !!! | CAATTTTTTCCACCAGGGGC+TGG | + | chr1.4:87910508-87910527 | MS.gene90819:CDS | 50.0% |
| AAGAAAACACCAGCCCCTGG+TGG | - | chr1.4:87910520-87910539 | None:intergenic | 55.0% | |
| CTGAAGAAAACACCAGCCCC+TGG | - | chr1.4:87910523-87910542 | None:intergenic | 55.0% | |
| GCAGCAGCATCCATGATCAC+TGG | + | chr1.4:87906190-87906209 | MS.gene90819:CDS | 55.0% | |
| GGAGTCTTGCCCTTCCACTT+AGG | - | chr1.4:87909875-87909894 | None:intergenic | 55.0% | |
| TCCAACACTGCCTCCGAAAG+CGG | - | chr1.4:87910723-87910742 | None:intergenic | 55.0% | |
| ! | GCAGTGTTGGAGACCATGAC+CGG | + | chr1.4:87910732-87910751 | MS.gene90819:CDS | 55.0% |
| !! | GATGGAGGTGTCACCACTGC+CGG | - | chr1.4:87906241-87906260 | None:intergenic | 60.0% |
| ! | GCCGCTTTCGGAGGCAGTGT+TGG | + | chr1.4:87910719-87910738 | MS.gene90819:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 87906181 | 87910845 | 87906181 | ID=MS.gene90819 |
| chr1.4 | mRNA | 87906181 | 87910845 | 87906181 | ID=MS.gene90819.t1;Parent=MS.gene90819 |
| chr1.4 | exon | 87906181 | 87906292 | 87906181 | ID=MS.gene90819.t1.exon1;Parent=MS.gene90819.t1 |
| chr1.4 | CDS | 87906181 | 87906292 | 87906181 | ID=cds.MS.gene90819.t1;Parent=MS.gene90819.t1 |
| chr1.4 | exon | 87909783 | 87909941 | 87909783 | ID=MS.gene90819.t1.exon2;Parent=MS.gene90819.t1 |
| chr1.4 | CDS | 87909783 | 87909941 | 87909783 | ID=cds.MS.gene90819.t1;Parent=MS.gene90819.t1 |
| chr1.4 | exon | 87910344 | 87910567 | 87910344 | ID=MS.gene90819.t1.exon3;Parent=MS.gene90819.t1 |
| chr1.4 | CDS | 87910344 | 87910567 | 87910344 | ID=cds.MS.gene90819.t1;Parent=MS.gene90819.t1 |
| chr1.4 | exon | 87910660 | 87910845 | 87910660 | ID=MS.gene90819.t1.exon4;Parent=MS.gene90819.t1 |
| chr1.4 | CDS | 87910660 | 87910845 | 87910660 | ID=cds.MS.gene90819.t1;Parent=MS.gene90819.t1 |
| Gene Sequence |
| Protein sequence |
