Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061683.t1 | XP_013466725.1 | 96.8 | 247 | 8 | 0 | 1 | 247 | 1 | 247 | 3.50E-136 | 494.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061683.t1 | Q8GZP5 | 49.6 | 240 | 120 | 1 | 8 | 247 | 16 | 254 | 9.3e-69 | 261.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061683.t1 | Q7X9B2 | 96.8 | 247 | 8 | 0 | 1 | 247 | 1 | 247 | 2.5e-136 | 494.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene061683 | -0.845465 | 3.99E-59 | -1.69E-46 |
| MS.gene04921 | MS.gene061683 | 0.827539 | 1.48E-54 | -1.69E-46 |
| MS.gene049251 | MS.gene061683 | 0.803556 | 3.30E-49 | -1.69E-46 |
| MS.gene049285 | MS.gene061683 | -0.80961 | 1.74E-50 | -1.69E-46 |
| MS.gene049320 | MS.gene061683 | -0.823637 | 1.24E-53 | -1.69E-46 |
| MS.gene049633 | MS.gene061683 | -0.833527 | 5.07E-56 | -1.69E-46 |
| MS.gene050082 | MS.gene061683 | 0.807161 | 5.79E-50 | -1.69E-46 |
| MS.gene050165 | MS.gene061683 | -0.809636 | 1.72E-50 | -1.69E-46 |
| MS.gene050170 | MS.gene061683 | -0.844791 | 6.07E-59 | -1.69E-46 |
| MS.gene050323 | MS.gene061683 | -0.821719 | 3.48E-53 | -1.69E-46 |
| MS.gene050338 | MS.gene061683 | 0.840665 | 7.58E-58 | -1.69E-46 |
| MS.gene050444 | MS.gene061683 | -0.829767 | 4.28E-55 | -1.69E-46 |
| MS.gene050496 | MS.gene061683 | -0.83802 | 3.68E-57 | -1.69E-46 |
| MS.gene050504 | MS.gene061683 | -0.825313 | 5.02E-54 | -1.69E-46 |
| MS.gene050577 | MS.gene061683 | -0.815436 | 9.25E-52 | -1.69E-46 |
| MS.gene050612 | MS.gene061683 | -0.847479 | 1.13E-59 | -1.69E-46 |
| MS.gene050675 | MS.gene061683 | -0.809099 | 2.24E-50 | -1.69E-46 |
| MS.gene050699 | MS.gene061683 | -0.801736 | 7.82E-49 | -1.69E-46 |
| MS.gene050809 | MS.gene061683 | 0.800827 | 1.20E-48 | -1.69E-46 |
| MS.gene05080 | MS.gene061683 | -0.822324 | 2.52E-53 | -1.69E-46 |
| MS.gene050868 | MS.gene061683 | -0.846427 | 2.19E-59 | -1.69E-46 |
| MS.gene050871 | MS.gene061683 | -0.842561 | 2.40E-58 | -1.69E-46 |
| MS.gene050904 | MS.gene061683 | -0.819321 | 1.24E-52 | -1.69E-46 |
| MS.gene050986 | MS.gene061683 | -0.806847 | 6.74E-50 | -1.69E-46 |
| MS.gene051044 | MS.gene061683 | 0.84631 | 2.35E-59 | -1.69E-46 |
| MS.gene05104 | MS.gene061683 | 0.812774 | 3.58E-51 | -1.69E-46 |
| MS.gene051127 | MS.gene061683 | 0.801822 | 7.51E-49 | -1.69E-46 |
| MS.gene051138 | MS.gene061683 | 0.876473 | 1.36E-68 | -1.69E-46 |
| MS.gene051317 | MS.gene061683 | -0.809584 | 1.76E-50 | -1.69E-46 |
| MS.gene051422 | MS.gene061683 | 0.803166 | 3.97E-49 | -1.69E-46 |
| MS.gene051439 | MS.gene061683 | 0.828251 | 9.97E-55 | -1.69E-46 |
| MS.gene051440 | MS.gene061683 | 0.820757 | 5.79E-53 | -1.69E-46 |
| MS.gene051517 | MS.gene061683 | 0.814147 | 1.79E-51 | -1.69E-46 |
| MS.gene051651 | MS.gene061683 | 0.877696 | 5.11E-69 | -1.69E-46 |
| MS.gene051973 | MS.gene061683 | 0.807026 | 6.18E-50 | -1.69E-46 |
| MS.gene052129 | MS.gene061683 | 0.873124 | 1.87E-67 | -1.69E-46 |
| MS.gene052164 | MS.gene061683 | -0.806744 | 7.09E-50 | -1.69E-46 |
| MS.gene05240 | MS.gene061683 | 0.801337 | 9.45E-49 | -1.69E-46 |
| MS.gene052494 | MS.gene061683 | 0.812002 | 5.28E-51 | -1.69E-46 |
| MS.gene052606 | MS.gene061683 | 0.841006 | 6.17E-58 | -1.69E-46 |
| MS.gene052703 | MS.gene061683 | 0.813157 | 2.95E-51 | -1.69E-46 |
| MS.gene052710 | MS.gene061683 | 0.810757 | 9.84E-51 | -1.69E-46 |
| MS.gene053097 | MS.gene061683 | 0.809504 | 1.83E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene061683 | -0.809415 | 1.91E-50 | -1.69E-46 |
| MS.gene053218 | MS.gene061683 | 0.8046 | 2.00E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene061683 | 0.817559 | 3.10E-52 | -1.69E-46 |
| MS.gene053479 | MS.gene061683 | -0.810968 | 8.85E-51 | -1.69E-46 |
| MS.gene053824 | MS.gene061683 | -0.805241 | 1.47E-49 | -1.69E-46 |
| MS.gene053887 | MS.gene061683 | 0.814514 | 1.48E-51 | -1.69E-46 |
| MS.gene054344 | MS.gene061683 | -0.804152 | 2.48E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene061683 | -0.802108 | 6.56E-49 | -1.69E-46 |
| MS.gene054706 | MS.gene061683 | 0.822062 | 2.90E-53 | -1.69E-46 |
| MS.gene05470 | MS.gene061683 | -0.863869 | 1.83E-64 | -1.69E-46 |
| MS.gene054884 | MS.gene061683 | 0.819343 | 1.22E-52 | -1.69E-46 |
| MS.gene054954 | MS.gene061683 | -0.823186 | 1.59E-53 | -1.69E-46 |
| MS.gene054959 | MS.gene061683 | 0.806805 | 6.88E-50 | -1.69E-46 |
| MS.gene055251 | MS.gene061683 | 0.851902 | 6.56E-61 | -1.69E-46 |
| MS.gene055362 | MS.gene061683 | -0.81361 | 2.35E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene061683 | -0.824365 | 8.40E-54 | -1.69E-46 |
| MS.gene055577 | MS.gene061683 | -0.829208 | 5.85E-55 | -1.69E-46 |
| MS.gene055729 | MS.gene061683 | 0.813802 | 2.13E-51 | -1.69E-46 |
| MS.gene055730 | MS.gene061683 | 0.818461 | 1.94E-52 | -1.69E-46 |
| MS.gene055731 | MS.gene061683 | 0.823394 | 1.42E-53 | -1.69E-46 |
| MS.gene055748 | MS.gene061683 | -0.854555 | 1.14E-61 | -1.69E-46 |
| MS.gene055750 | MS.gene061683 | -0.817319 | 3.51E-52 | -1.69E-46 |
| MS.gene055751 | MS.gene061683 | -0.85887 | 6.12E-63 | -1.69E-46 |
| MS.gene055776 | MS.gene061683 | -0.807714 | 4.42E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene061683 | -0.87199 | 4.48E-67 | -1.69E-46 |
| MS.gene055942 | MS.gene061683 | 0.85766 | 1.40E-62 | -1.69E-46 |
| MS.gene056198 | MS.gene061683 | 0.817664 | 2.93E-52 | -1.69E-46 |
| MS.gene056224 | MS.gene061683 | 0.824756 | 6.79E-54 | -1.69E-46 |
| MS.gene056266 | MS.gene061683 | -0.814085 | 1.84E-51 | -1.69E-46 |
| MS.gene056354 | MS.gene061683 | 0.805004 | 1.65E-49 | -1.69E-46 |
| MS.gene056387 | MS.gene061683 | -0.816029 | 6.82E-52 | -1.69E-46 |
| MS.gene056504 | MS.gene061683 | -0.84217 | 3.05E-58 | -1.69E-46 |
| MS.gene056590 | MS.gene061683 | 0.802744 | 4.85E-49 | -1.69E-46 |
| MS.gene056591 | MS.gene061683 | 0.802428 | 5.64E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene061683 | -0.800215 | 1.60E-48 | -1.69E-46 |
| MS.gene056678 | MS.gene061683 | 0.805049 | 1.61E-49 | -1.69E-46 |
| MS.gene056692 | MS.gene061683 | -0.809918 | 1.49E-50 | -1.69E-46 |
| MS.gene056694 | MS.gene061683 | 0.864386 | 1.26E-64 | -1.69E-46 |
| MS.gene056697 | MS.gene061683 | 0.84901 | 4.25E-60 | -1.69E-46 |
| MS.gene056748 | MS.gene061683 | 0.830301 | 3.17E-55 | -1.69E-46 |
| MS.gene056856 | MS.gene061683 | 0.878552 | 2.56E-69 | -1.69E-46 |
| MS.gene056857 | MS.gene061683 | 0.817256 | 3.62E-52 | -1.69E-46 |
| MS.gene057548 | MS.gene061683 | 0.817535 | 3.14E-52 | -1.69E-46 |
| MS.gene057549 | MS.gene061683 | 0.804235 | 2.38E-49 | -1.69E-46 |
| MS.gene057717 | MS.gene061683 | 0.831101 | 2.02E-55 | -1.69E-46 |
| MS.gene057768 | MS.gene061683 | 0.83797 | 3.80E-57 | -1.69E-46 |
| MS.gene058068 | MS.gene061683 | 0.831172 | 1.94E-55 | -1.69E-46 |
| MS.gene058099 | MS.gene061683 | 0.806576 | 7.69E-50 | -1.69E-46 |
| MS.gene058268 | MS.gene061683 | 0.815212 | 1.04E-51 | -1.69E-46 |
| MS.gene058269 | MS.gene061683 | 0.801923 | 7.16E-49 | -1.69E-46 |
| MS.gene058334 | MS.gene061683 | 0.888041 | 8.39E-73 | -1.69E-46 |
| MS.gene05837 | MS.gene061683 | -0.807469 | 4.98E-50 | -1.69E-46 |
| MS.gene058382 | MS.gene061683 | 0.830016 | 3.72E-55 | -1.69E-46 |
| MS.gene058419 | MS.gene061683 | -0.824315 | 8.63E-54 | -1.69E-46 |
| MS.gene058452 | MS.gene061683 | 0.809482 | 1.85E-50 | -1.69E-46 |
| MS.gene058544 | MS.gene061683 | -0.823865 | 1.10E-53 | -1.69E-46 |
| MS.gene058603 | MS.gene061683 | 0.854992 | 8.50E-62 | -1.69E-46 |
| MS.gene058838 | MS.gene061683 | -0.82221 | 2.68E-53 | -1.69E-46 |
| MS.gene059022 | MS.gene061683 | -0.832522 | 9.01E-56 | -1.69E-46 |
| MS.gene059023 | MS.gene061683 | -0.831702 | 1.44E-55 | -1.69E-46 |
| MS.gene05914 | MS.gene061683 | -0.813629 | 2.32E-51 | -1.69E-46 |
| MS.gene05926 | MS.gene061683 | 0.839771 | 1.30E-57 | -1.69E-46 |
| MS.gene059304 | MS.gene061683 | 0.840921 | 6.50E-58 | -1.69E-46 |
| MS.gene05960 | MS.gene061683 | 0.80678 | 6.97E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene061683 | -0.826589 | 2.50E-54 | -1.69E-46 |
| MS.gene059699 | MS.gene061683 | 0.808007 | 3.83E-50 | -1.69E-46 |
| MS.gene059701 | MS.gene061683 | 0.812145 | 4.91E-51 | -1.69E-46 |
| MS.gene059703 | MS.gene061683 | 0.819063 | 1.41E-52 | -1.69E-46 |
| MS.gene059865 | MS.gene061683 | -0.850607 | 1.52E-60 | -1.69E-46 |
| MS.gene06000 | MS.gene061683 | -0.825579 | 4.34E-54 | -1.69E-46 |
| MS.gene060076 | MS.gene061683 | 0.82556 | 4.39E-54 | -1.69E-46 |
| MS.gene060077 | MS.gene061683 | 0.804879 | 1.75E-49 | -1.69E-46 |
| MS.gene06027 | MS.gene061683 | -0.807709 | 4.43E-50 | -1.69E-46 |
| MS.gene060405 | MS.gene061683 | 0.836012 | 1.20E-56 | -1.69E-46 |
| MS.gene060593 | MS.gene061683 | 0.800815 | 1.21E-48 | -1.69E-46 |
| MS.gene060762 | MS.gene061683 | -0.845572 | 3.74E-59 | -1.69E-46 |
| MS.gene06077 | MS.gene061683 | -0.81451 | 1.48E-51 | -1.69E-46 |
| MS.gene060823 | MS.gene061683 | 0.820214 | 7.72E-53 | -1.69E-46 |
| MS.gene06084 | MS.gene061683 | 0.826531 | 2.58E-54 | -1.69E-46 |
| MS.gene060982 | MS.gene061683 | -0.843995 | 9.94E-59 | -1.69E-46 |
| MS.gene061044 | MS.gene061683 | 0.9413 | 5.29E-101 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061683.t1 | MTR_1g034320 | 96.761 | 247 | 8 | 0 | 1 | 247 | 1 | 247 | 5.98e-178 | 498 |
| MS.gene061683.t1 | MTR_1g034330 | 82.072 | 251 | 41 | 1 | 1 | 247 | 1 | 251 | 1.50e-151 | 431 |
| MS.gene061683.t1 | MTR_4g068550 | 63.968 | 247 | 85 | 3 | 1 | 247 | 1 | 243 | 5.73e-109 | 322 |
| MS.gene061683.t1 | MTR_3g111530 | 50.847 | 236 | 110 | 4 | 13 | 247 | 89 | 319 | 8.99e-71 | 226 |
| MS.gene061683.t1 | MTR_1g021652 | 48.333 | 240 | 118 | 4 | 8 | 247 | 52 | 285 | 9.23e-70 | 223 |
| MS.gene061683.t1 | MTR_2g087890 | 39.149 | 235 | 137 | 4 | 14 | 246 | 22 | 252 | 7.20e-44 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061683.t1 | AT5G42650 | 46.610 | 236 | 121 | 3 | 12 | 247 | 49 | 279 | 1.40e-68 | 220 |
| MS.gene061683.t1 | AT4G15440 | 36.184 | 152 | 94 | 2 | 94 | 245 | 4 | 152 | 4.73e-19 | 85.5 |
Find 50 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGATTGAAGATGGGCTTTC+TGG | 0.174432 | 1.3:+19054315 | MS.gene061683:CDS |
| CTTGCTCCACTTGCAACTTT+AGG | 0.254713 | 1.3:+19054486 | MS.gene061683:CDS |
| TCAAGATAATTGAAAATCTT+AGG | 0.276501 | 1.3:-19054513 | None:intergenic |
| TGCTATGACTCTTGGGTTTG+AGG | 0.356639 | 1.3:-19054052 | None:intergenic |
| GTCCTAAAATGTTTGATACT+TGG | 0.383207 | 1.3:+19054451 | MS.gene061683:CDS |
| TCTAAAAGTGCTATGACTCT+TGG | 0.437203 | 1.3:-19054060 | None:intergenic |
| CTAAAAGTGCTATGACTCTT+GGG | 0.446715 | 1.3:-19054059 | None:intergenic |
| AGAAGAATTTGTCTCTTCCC+TGG | 0.447129 | 1.3:-19053963 | None:intergenic |
| CCTTTCCTGCTTGTTTGACA+AGG | 0.452440 | 1.3:+19054559 | MS.gene061683:CDS |
| AAAGGGAGGCCATAGCTGCC+TGG | 0.458877 | 1.3:-19053901 | None:intergenic |
| CCTTTGATAAGTGCATGGTT+TGG | 0.464225 | 1.3:-19054213 | None:intergenic |
| AAACAAATCCCAGGCAGCTA+TGG | 0.478988 | 1.3:+19053892 | MS.gene061683:CDS |
| TCTTGGGTTTGAGGAAATGA+AGG | 0.480085 | 1.3:-19054043 | None:intergenic |
| GGTTTGGTTCAGTTGTGTCT+AGG | 0.483967 | 1.3:-19054197 | None:intergenic |
| CCTTGTCAAACAAGCAGGAA+AGG | 0.488909 | 1.3:-19054559 | None:intergenic |
| TAGTGGGAGCTCTTTGTTGG+TGG | 0.491046 | 1.3:-19053869 | None:intergenic |
| GAAACTATCCTTGGTGATCA+AGG | 0.500468 | 1.3:+19054429 | MS.gene061683:CDS |
| AACCCTTCTGAAACTATCCT+TGG | 0.510155 | 1.3:+19054420 | MS.gene061683:CDS |
| TAGTCGTGTCGGTCGAAGAT+CGG | 0.514893 | 1.3:-19053931 | None:intergenic |
| TTCAGAACCAACATGCCTCC+AGG | 0.517385 | 1.3:+19054018 | MS.gene061683:CDS |
| CGAAGATCGGTCCGATGAAA+GGG | 0.519863 | 1.3:-19053918 | None:intergenic |
| GATGGGCTTTCTGGTAAAAG+TGG | 0.524979 | 1.3:+19054324 | MS.gene061683:CDS |
| TCGAAGATCGGTCCGATGAA+AGG | 0.525790 | 1.3:-19053919 | None:intergenic |
| AGCTATGGCCTCCCTTTCAT+CGG | 0.539465 | 1.3:+19053907 | MS.gene061683:CDS |
| AAGGGAGGCCATAGCTGCCT+GGG | 0.542022 | 1.3:-19053900 | None:intergenic |
| CCAAACCATGCACTTATCAA+AGG | 0.547827 | 1.3:+19054213 | MS.gene061683:CDS |
| CTTGTCAAACAAGCAGGAAA+GGG | 0.552808 | 1.3:-19054558 | None:intergenic |
| AAAGTATAGTCTTAAAGAGA+GGG | 0.558116 | 1.3:-19054278 | None:intergenic |
| GAAAGTATAGTCTTAAAGAG+AGG | 0.560352 | 1.3:-19054279 | None:intergenic |
| AGAAACCTTTGATAAGTGCA+TGG | 0.573003 | 1.3:-19054218 | None:intergenic |
| CACGACTACTTCTACAACCA+GGG | 0.577411 | 1.3:+19053946 | MS.gene061683:CDS |
| TCTCACCTTGTCAAACAAGC+AGG | 0.589767 | 1.3:-19054564 | None:intergenic |
| ACACGACTACTTCTACAACC+AGG | 0.590429 | 1.3:+19053945 | MS.gene061683:CDS |
| GAAGGGACCTGGAGGCATGT+TGG | 0.593712 | 1.3:-19054025 | None:intergenic |
| TCACCAAGGATAGTTTCAGA+AGG | 0.597461 | 1.3:-19054423 | None:intergenic |
| CACCAAGGATAGTTTCAGAA+GGG | 0.600780 | 1.3:-19054422 | None:intergenic |
| AGATAATTGAAAATCTTAGG+AGG | 0.601465 | 1.3:-19054510 | None:intergenic |
| TTTGAGGAAATGAAGGGACC+TGG | 0.609736 | 1.3:-19054036 | None:intergenic |
| AGCACATACACGGTAACCAC+CGG | 0.615577 | 1.3:-19054172 | None:intergenic |
| CTCCCACTAAAACAAATCCC+AGG | 0.620738 | 1.3:+19053883 | MS.gene061683:CDS |
| GGAGGTCCTAAAGTTGCAAG+TGG | 0.621056 | 1.3:-19054492 | None:intergenic |
| CTTGGGTTTGAGGAAATGAA+GGG | 0.627221 | 1.3:-19054042 | None:intergenic |
| ATGCCGTCGACAAAATTCAC+CGG | 0.643799 | 1.3:+19054153 | MS.gene061683:CDS |
| AGATCGGTCCGATGAAAGGG+AGG | 0.647150 | 1.3:-19053915 | None:intergenic |
| GGTTGTAGAAGTAGTCGTGT+CGG | 0.648799 | 1.3:-19053942 | None:intergenic |
| ACGGCATGTAAGTGCCGTCG+AGG | 0.653207 | 1.3:-19054137 | None:intergenic |
| GAAGAGGATCGGGAAAGATG+CGG | 0.653874 | 1.3:-19054085 | None:intergenic |
| GAGGAAATGAAGGGACCTGG+AGG | 0.681898 | 1.3:-19054033 | None:intergenic |
| CCGTCGACAAAATTCACCGG+TGG | 0.696972 | 1.3:+19054156 | MS.gene061683:CDS |
| TGTCTAGGTAAGCACATACA+CGG | 0.697884 | 1.3:-19054182 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAGATAATTGAAAATCTT+AGG | - | chr1.3:19054516-19054535 | None:intergenic | 20.0% |
| !!! | AGATTGTTGAATTGTATTTT+TGG | - | chr1.3:19053999-19054018 | None:intergenic | 20.0% |
| ! | AGATAATTGAAAATCTTAGG+AGG | - | chr1.3:19054513-19054532 | None:intergenic | 25.0% |
| !! | AAAGTATAGTCTTAAAGAGA+GGG | - | chr1.3:19054281-19054300 | None:intergenic | 25.0% |
| !! | AACCAAGTATCAAACATTTT+AGG | - | chr1.3:19054456-19054475 | None:intergenic | 25.0% |
| !!! | TTTTAACTCTATTATGAGTG+TGG | + | chr1.3:19054356-19054375 | MS.gene061683:CDS | 25.0% |
| GTCCTAAAATGTTTGATACT+TGG | + | chr1.3:19054451-19054470 | MS.gene061683:CDS | 30.0% | |
| ! | CTTTTAGTGAGATTGAAGAT+GGG | + | chr1.3:19054307-19054326 | MS.gene061683:CDS | 30.0% |
| ! | GAAAGTATAGTCTTAAAGAG+AGG | - | chr1.3:19054282-19054301 | None:intergenic | 30.0% |
| ! | TGAAGATATTTTGCTACGTA+CGG | + | chr1.3:19054533-19054552 | MS.gene061683:CDS | 30.0% |
| AGAAACCTTTGATAAGTGCA+TGG | - | chr1.3:19054221-19054240 | None:intergenic | 35.0% | |
| ! | GCTTTTAGTGAGATTGAAGA+TGG | + | chr1.3:19054306-19054325 | MS.gene061683:CDS | 35.0% |
| !! | CTAAAAGTGCTATGACTCTT+GGG | - | chr1.3:19054062-19054081 | None:intergenic | 35.0% |
| !! | TCTAAAAGTGCTATGACTCT+TGG | - | chr1.3:19054063-19054082 | None:intergenic | 35.0% |
| !! | TTTTTGTTGTCGAAGAGGAT+CGG | - | chr1.3:19054099-19054118 | None:intergenic | 35.0% |
| AGAAGAATTTGTCTCTTCCC+TGG | - | chr1.3:19053966-19053985 | None:intergenic | 40.0% | |
| CACCAAGGATAGTTTCAGAA+GGG | - | chr1.3:19054425-19054444 | None:intergenic | 40.0% | |
| CCAAACCATGCACTTATCAA+AGG | + | chr1.3:19054213-19054232 | MS.gene061683:CDS | 40.0% | |
| CCTTTGATAAGTGCATGGTT+TGG | - | chr1.3:19054216-19054235 | None:intergenic | 40.0% | |
| CTTGGGTTTGAGGAAATGAA+GGG | - | chr1.3:19054045-19054064 | None:intergenic | 40.0% | |
| CTTGTCAAACAAGCAGGAAA+GGG | - | chr1.3:19054561-19054580 | None:intergenic | 40.0% | |
| TCACCAAGGATAGTTTCAGA+AGG | - | chr1.3:19054426-19054445 | None:intergenic | 40.0% | |
| TCTTGGGTTTGAGGAAATGA+AGG | - | chr1.3:19054046-19054065 | None:intergenic | 40.0% | |
| TGTCTAGGTAAGCACATACA+CGG | - | chr1.3:19054185-19054204 | None:intergenic | 40.0% | |
| ! | GAAACTATCCTTGGTGATCA+AGG | + | chr1.3:19054429-19054448 | MS.gene061683:CDS | 40.0% |
| ! | TTTTAGTGGGAGCTCTTTGT+TGG | - | chr1.3:19053875-19053894 | None:intergenic | 40.0% |
| !! | AACCCTTCTGAAACTATCCT+TGG | + | chr1.3:19054420-19054439 | MS.gene061683:CDS | 40.0% |
| !! | TTTTGTTGTCGAAGAGGATC+GGG | - | chr1.3:19054098-19054117 | None:intergenic | 40.0% |
| !!! | CGACTTTTTTGTTGTCGAAG+AGG | - | chr1.3:19054104-19054123 | None:intergenic | 40.0% |
| !!! | TGCCTGGGATTTGTTTTAGT+GGG | - | chr1.3:19053888-19053907 | None:intergenic | 40.0% |
| !!! | TTTTAGGACCTTGATCACCA+AGG | - | chr1.3:19054440-19054459 | None:intergenic | 40.0% |
| AAACAAATCCCAGGCAGCTA+TGG | + | chr1.3:19053892-19053911 | MS.gene061683:CDS | 45.0% | |
| ACACGACTACTTCTACAACC+AGG | + | chr1.3:19053945-19053964 | MS.gene061683:CDS | 45.0% | |
| ATGCCGTCGACAAAATTCAC+CGG | + | chr1.3:19054153-19054172 | MS.gene061683:CDS | 45.0% | |
| CACGACTACTTCTACAACCA+GGG | + | chr1.3:19053946-19053965 | MS.gene061683:CDS | 45.0% | |
| CCTTGTCAAACAAGCAGGAA+AGG | - | chr1.3:19054562-19054581 | None:intergenic | 45.0% | |
| CCTTTCCTGCTTGTTTGACA+AGG | + | chr1.3:19054559-19054578 | MS.gene061683:CDS | 45.0% | |
| CTCCCACTAAAACAAATCCC+AGG | + | chr1.3:19053883-19053902 | MS.gene061683:CDS | 45.0% | |
| CTTGCTCCACTTGCAACTTT+AGG | + | chr1.3:19054486-19054505 | MS.gene061683:CDS | 45.0% | |
| GAAAAACTCAACGTCCTCGA+CGG | + | chr1.3:19054123-19054142 | MS.gene061683:CDS | 45.0% | |
| GGTTGTAGAAGTAGTCGTGT+CGG | - | chr1.3:19053945-19053964 | None:intergenic | 45.0% | |
| TGCTATGACTCTTGGGTTTG+AGG | - | chr1.3:19054055-19054074 | None:intergenic | 45.0% | |
| TTTGAGGAAATGAAGGGACC+TGG | - | chr1.3:19054039-19054058 | None:intergenic | 45.0% | |
| ! | GAGATTGAAGATGGGCTTTC+TGG | + | chr1.3:19054315-19054334 | MS.gene061683:CDS | 45.0% |
| ! | GATGGGCTTTCTGGTAAAAG+TGG | + | chr1.3:19054324-19054343 | MS.gene061683:CDS | 45.0% |
| ! | GGTTTGGTTCAGTTGTGTCT+AGG | - | chr1.3:19054200-19054219 | None:intergenic | 45.0% |
| !!! | CTGCCTGGGATTTGTTTTAG+TGG | - | chr1.3:19053889-19053908 | None:intergenic | 45.0% |
| AGCACATACACGGTAACCAC+CGG | - | chr1.3:19054175-19054194 | None:intergenic | 50.0% | |
| AGCTATGGCCTCCCTTTCAT+CGG | + | chr1.3:19053907-19053926 | MS.gene061683:CDS | 50.0% | |
| CGAAGATCGGTCCGATGAAA+GGG | - | chr1.3:19053921-19053940 | None:intergenic | 50.0% | |
| GAAGAGGATCGGGAAAGATG+CGG | - | chr1.3:19054088-19054107 | None:intergenic | 50.0% | |
| GGAGGTCCTAAAGTTGCAAG+TGG | - | chr1.3:19054495-19054514 | None:intergenic | 50.0% | |
| TAGTGGGAGCTCTTTGTTGG+TGG | - | chr1.3:19053872-19053891 | None:intergenic | 50.0% | |
| TCGAAGATCGGTCCGATGAA+AGG | - | chr1.3:19053922-19053941 | None:intergenic | 50.0% | |
| TTCAGAACCAACATGCCTCC+AGG | + | chr1.3:19054018-19054037 | MS.gene061683:CDS | 50.0% | |
| ! | CCACCGGTGAATTTTGTCGA+CGG | - | chr1.3:19054159-19054178 | None:intergenic | 50.0% |
| ! | TAGTCGTGTCGGTCGAAGAT+CGG | - | chr1.3:19053934-19053953 | None:intergenic | 50.0% |
| AGATCGGTCCGATGAAAGGG+AGG | - | chr1.3:19053918-19053937 | None:intergenic | 55.0% | |
| CCGTCGACAAAATTCACCGG+TGG | + | chr1.3:19054156-19054175 | MS.gene061683:CDS | 55.0% | |
| GAGGAAATGAAGGGACCTGG+AGG | - | chr1.3:19054036-19054055 | None:intergenic | 55.0% | |
| AAAGGGAGGCCATAGCTGCC+TGG | - | chr1.3:19053904-19053923 | None:intergenic | 60.0% | |
| AAGGGAGGCCATAGCTGCCT+GGG | - | chr1.3:19053903-19053922 | None:intergenic | 60.0% | |
| ! | ACGGCATGTAAGTGCCGTCG+AGG | - | chr1.3:19054140-19054159 | None:intergenic | 60.0% |
| ! | GAAGGGACCTGGAGGCATGT+TGG | - | chr1.3:19054028-19054047 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 19053841 | 19054584 | 19053841 | ID=MS.gene061683 |
| chr1.3 | mRNA | 19053841 | 19054584 | 19053841 | ID=MS.gene061683.t1;Parent=MS.gene061683 |
| chr1.3 | exon | 19053841 | 19054584 | 19053841 | ID=MS.gene061683.t1.exon1;Parent=MS.gene061683.t1 |
| chr1.3 | CDS | 19053841 | 19054584 | 19053841 | ID=cds.MS.gene061683.t1;Parent=MS.gene061683.t1 |
| Gene Sequence |
| Protein sequence |
