AlfalfaGEDB | MS.gene067635

M. sativa cultivar XinJiangDaYe / MS.gene067635

KEGG: -
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF04548.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067635.t1	XP_003605489.2	95.3	254	12	0	1	254	2	255	1.70E-107	399.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067635.t1	F4HT21	50.0	254	117	2	1	254	6	249	1.8e-62	241.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067635.t1	G7JN49	95.3	254	12	0	1	254	2	255	1.2e-107	399.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049230	MS.gene067635	0.834639	2.67E-56	-1.69E-46
MS.gene049424	MS.gene067635	0.85845	8.17E-63	-1.69E-46
MS.gene049650	MS.gene067635	0.813058	3.10E-51	-1.69E-46
MS.gene049653	MS.gene067635	0.82605	3.36E-54	-1.69E-46
MS.gene049861	MS.gene067635	0.813553	2.42E-51	-1.69E-46
MS.gene049951	MS.gene067635	0.822434	2.37E-53	-1.69E-46
MS.gene050277	MS.gene067635	0.80752	4.86E-50	-1.69E-46
MS.gene050987	MS.gene067635	0.809806	1.58E-50	-1.69E-46
MS.gene051245	MS.gene067635	0.800345	1.51E-48	-1.69E-46
MS.gene051349	MS.gene067635	0.816431	5.55E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene009458	MS.gene067635	PPI
MS.gene51627	MS.gene067635	PPI
MS.gene56256	MS.gene067635	PPI
MS.gene63514	MS.gene067635	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067635.t1	MTR_4g032220	92.197	346	26	1	1	345	2	347	0.0	607
MS.gene067635.t1	MTR_4g032240	86.455	347	45	1	1	345	2	348	0.0	592
MS.gene067635.t1	MTR_4g032300	68.481	349	97	4	1	345	1	340	9.56e-169	473
MS.gene067635.t1	MTR_4g032350	70.336	327	91	1	8	334	10	330	7.19e-164	462
MS.gene067635.t1	MTR_4g032330	64.179	67	23	1	280	345	17	83	7.23e-17	75.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067635.t1	AT1G33970	56.560	343	136	3	1	340	6	338	2.06e-125	363
MS.gene067635.t1	AT1G33970	56.560	343	136	3	1	340	6	338	2.06e-125	363
MS.gene067635.t1	AT1G33970	56.560	343	136	3	1	340	6	338	2.06e-125	363
MS.gene067635.t1	AT1G33970	56.560	343	136	3	1	340	6	338	2.06e-125	363
MS.gene067635.t1	AT1G33970	57.500	280	109	2	1	280	6	275	5.70e-105	309
MS.gene067635.t1	AT1G33960	50.000	318	146	5	8	313	15	331	6.60e-91	276
MS.gene067635.t1	AT1G33960	50.000	318	146	5	8	313	39	355	1.85e-90	276
MS.gene067635.t1	AT1G33950	48.571	280	143	1	16	295	4	282	7.40e-90	272
MS.gene067635.t1	AT1G33930	46.939	294	149	2	8	295	9	301	1.48e-88	270
MS.gene067635.t1	AT1G33900	46.259	294	149	3	24	316	14	299	1.74e-88	269

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Find 73 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGATAACACCACAAGGA+TGG	0.595518	4.1:+69188532	None:intergenic
AACGATTCCCACACAAAGAG+AGG	0.592811	4.1:+69187634	None:intergenic
AACTTGATAGTATCACAGAA+TGG	0.627543	4.1:-69187537	MS.gene067635:CDS
AAGCTATGTTGAAGATGATT+GGG	0.476526	4.1:-69189837	MS.gene067635:CDS
AAGGACGAAAAGAAGCGATC+TGG	0.516709	4.1:-69187588	MS.gene067635:CDS
AAGTCTAGGGCTAGCTCGTC+CGG	0.453629	4.1:-69189683	MS.gene067635:CDS
ACGATGAAATACGAGAACTA+AGG	0.583971	4.1:-69185255	MS.gene067635:CDS
ACTAAGGAAGCATCTTGAGG+AGG	0.684028	4.1:-69185239	MS.gene067635:CDS
ACTCTGCAAGCGAGGTGGCA+AGG	0.548096	4.1:-69185206	MS.gene067635:CDS
AGAACTAAGGAAGCATCTTG+AGG	0.630454	4.1:-69185242	MS.gene067635:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATACGAGAGAAAAATGAC+AGG	+	chr4.1:69187144-69187163	None:intergenic	30.0%
AAATCTCCAAATGGTTCAAA+TGG	+	chr4.1:69187010-69187029	None:intergenic	30.0%
AAATTCCCATTTGAACCATT+TGG	-	chr4.1:69187001-69187020	MS.gene067635:intron	30.0%
AAGCTATGTTGAAGATGATT+GGG	-	chr4.1:69185197-69185216	MS.gene067635:CDS	30.0%
AAGTAAGGACTAAACTTACA+AGG	+	chr4.1:69188801-69188820	None:intergenic	30.0%
AAGTAAGGACTAAACTTAGA+AGG	-	chr4.1:69189245-69189264	MS.gene067635:intron	30.0%
AATACGAGAGAAAAATGACA+GGG	+	chr4.1:69187143-69187162	None:intergenic	30.0%
AATATGTCTTCTTACGCATT+TGG	-	chr4.1:69186914-69186933	MS.gene067635:intron	30.0%
AATCTCCAAATGGTTCAAAT+GGG	+	chr4.1:69187009-69187028	None:intergenic	30.0%
AGTTATGAAAACTGCAAGTT+GGG	-	chr4.1:69188691-69188710	MS.gene067635:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	69185189	69189867	69185189	ID=MS.gene067635
chr4.1	mRNA	69185189	69189867	69185189	ID=MS.gene067635.t1;Parent=MS.gene067635
chr4.1	exon	69189609	69189867	69189609	ID=MS.gene067635.t1.exon1;Parent=MS.gene067635.t1
chr4.1	CDS	69189609	69189867	69189609	ID=cds.MS.gene067635.t1;Parent=MS.gene067635.t1
chr4.1	exon	69188361	69188638	69188361	ID=MS.gene067635.t1.exon2;Parent=MS.gene067635.t1
chr4.1	CDS	69188361	69188638	69188361	ID=cds.MS.gene067635.t1;Parent=MS.gene067635.t1
chr4.1	exon	69187497	69187661	69187497	ID=MS.gene067635.t1.exon3;Parent=MS.gene067635.t1
chr4.1	CDS	69187497	69187661	69187497	ID=cds.MS.gene067635.t1;Parent=MS.gene067635.t1
chr4.1	exon	69187276	69187410	69187276	ID=MS.gene067635.t1.exon4;Parent=MS.gene067635.t1
chr4.1	CDS	69187276	69187410	69187276	ID=cds.MS.gene067635.t1;Parent=MS.gene067635.t1
chr4.1	exon	69185189	69185389	69185189	ID=MS.gene067635.t1.exon5;Parent=MS.gene067635.t1
chr4.1	CDS	69185189	69185389	69185189	ID=cds.MS.gene067635.t1;Parent=MS.gene067635.t1

Gene Sequence

>MS.gene067635

ATGGGGGGAAGCTATGTTGAAGATGATTGGGAATTGGCGTCAGCTGGATCAGCTAGCGAGGTTCAGATTTCAGCTAATGAAGCTCGGACAGTGGTTTTGGTTGGACGTACTGGCAATGGGAAGAGTGCAACCGGTAATAGTATTCTTGGGAAAAAGGTCTTTAAGTCTAGGGCTAGCTCGTCCGGTGTCACTTCCTCTTGTGAAATGCAGACTGCTGAGTTGAGTGATGGACAAATTGTCAATGTTATTGACACTCCAGGTAAATACAAGCCAACTTAGGCTATGGAGAGTTACTAATTGAAACCGTAGTTTTTATTTTATTTTAAATTATCTCAATTTTTACCGGTGTCTGTTGTTTTTGGCATCCGCGTTTGTGTTAGTGCTTCGTAGGATGAAATGTTAGAGTAGACATGATGATTAGTCTAGTTTGAACCCTGGAAATAAAACAATGTTCGAACTTTTGAGGGACAACTTGTCATAAGCACTCCATCTCGTTTTTGGTGTCCATATCTGTGTTTTGTAGGATGAAATGTTAGACTACATGATGATTAGTCGAGTTTAAACTGAGGGGCAACTTATCATAAGCACTCCATTCCCATTCCTTCAAAACCCTTTACACACAAAGGAGATGATTTTCATGTTTCTTACAAGATTGAATTGTTTTGAACAGAATTAACTTAAACATTCCGATGATTTTTATTATCAAAGGAGAGGTTGGGTTGTTGGTAAAGTAGATTTTGTGAGATGGGAATGAAATTTGATGTGTGGATCTTCTTTTTGAAAAAGTTTAAAGGAGCTTTACAGATTTGGCAAACATTTTTTTTCAATAATGCCCTAGAATAATATTCTTGGCATGATGTTTTTTGGAATGTCATTCACAAGGATTGATTTGAGGGGTAACCTTGGCGCAACTGGTAAAGTTGTTGTCATGTGACTGAAAGGTCATGGGTTCAAGTGCTGGAAGCAGCCTCTTGTGTAAAAACATGGTAAGGCTGCGTACAATACACCAAATATGGTGGGACCCCTTCCCGGACCCTGCGTATGCGGGAGCTTTAGTGCACCGGGTTGGCCTTTTTGTTTTTATTCACAAGGATTGATTTATATGACCTGAAACACGTAACACCTATGGCTTTGAATGAGTTATGAAGTGCATGTTGATTGTGATTACTTAATTATTTCCTTCTACTTCTTGAAAAGTTTGTGTCGCTTTAACCTGAAAAGTTTTACAGGATTATTTGAAGTTTCTGCTGGATCTGAGTTTATTGGGAAAGAAATAGCCAAGTGCATTGACTTTGCCATGGATGGTATCCATGCCATCCTTGTGGTGTTATCTGTTAGATCACGATTTAGTGAGGAAGAAGAAAATGCTCTACGCAGCTTGCAGACATTATTTGGAAGCAAGATTGTTGACTATATGATTGTGGTCTTCACGGGAGGGGATGGGTTAGAAGACGATGAAGATACACTTGACGACTATTTAGGTCGTGAATGTCCAGAATCTTTGAAGGTATTTATTAGTATTATAGTTTAGATTAATCGCTATTTCTTTTTTTATTCCATGGATTATTTTTTTTTCATTGAAGCATTTAACTGTTTGTGAAAAATTTAAGCATTGAATATATTTGCATTGCACAAACATACAATGTATTAATACTCTTAATAAAAGGATAACATAAAACTTTATTATGCCTTCTTGAACTCCCTCCTTTATTGATACGAATCACTAATATGTCTTCTTACGCATTTGGATAACCTTTAAAATATGCCCCTTTGTGATATATGTTTTTTCTGGATAAGCTTATAAACAAATTTAAATTCCCATTTGAACCATTTGGAGATTTAAAACAGTGATACACAGAAGGACAAATGAACTCTATGTAGGTTATTAGCCTTTCTTGGTTGTTTTGCTCTTCTATCTTGTAATCTTATGGAAAAGCATCATATTTTGTACCCCTGTCATTTTTCTCTCGTATTTGTTAATGCCTTCCTTATTTTATCTGGAAAAAATTAGGATAGTTTAGCAGCATAAACATTCTTTTTCAGAATGTTAAACTTACTCTGTTTGCATGTTGTTATAATTGGTAATGCTGCATATTTTTATGTATGTTGCTTGAGTATCTAGAATTATAGGAAAGTTTATCTGCTGAACCTCTATAGAAAAATTAATAATTTTGTTGATCTTTAATTGGCTTTAATAATATTGTAGCGAATCCTCTCTTTGTGTGGGAATCGTTGTGTTCTCTTTGACAACAAGACTAAGGACGAAAAGAAGCGATCTGGACAAGTTCAACAACTTCTCTCGTTTGTAAACTTGATAGTATCACAGAATGGCGGGCAACCTTATACAGATGAGTTATTTGCAAAACTAAAGGTGGAGGTTTTTGCAAGTTTCACTATCTTGTTTCTTTAATCTTGGAAAAGTATCATGATATCAGTGAATTCATATATTTATTGCAGAAAGGAGCAATGAAACTGCATAGCGGGCAAAGAAAGATTGATTCCTTGGAAGAACATTCAAAAGAAGAAATATCAGAGCTTAAAAAGCATATGCAGCAAACATATGAGGAGCAGCTAAAACATATTACTGAGATGGTACGTTTTATGTCTATATTTTTCAATATTCATCGTCATTTCATTTCGATGTTATTTAACTCAATTTTCTCACGTAGTGACATTTTATTTTTTTGATATTTTTTGGAAATTTGTATAGTAGATATATACATGCATTACTGCATGGTGCATACTAACTTAATAAGAAAGTTTAAGTTAATTAAAACAACAATTGCATAAGTTTGAACTTACCAATTAGTTGCATTCATTGCTGTTAGCTATTATTGGTGTTTTGACTTGATGTCACTTAGGATCTAATTTTGCTTAAAGCTCGTTCAATATCAGTAATTAAGTAATGGGCGACTATATTCTTTTTCCATTTCATGGTTCATAGGTCCAATGGCCTTGTGAATTTGTAACAGACATTAAATAGACACGTGCTTCCATTTTTGGGCGTGTGTGCTGTTTCCATTTTTGTATGTACGGACCAACTTTTAATAAGGAAAATAATTATGGAGGGTATCTTCCACAAGGATTAAACAATGAGATTAGTAGATTAGTTATTTGCGCTTCCTGTAGGAGTCAGAACCTTTGATAGCTAGGTAGGGGAAATTGTATTGGGAAGGTGTCTTTTGCAAATAGATCCTGATCAAAATGCAAGTAGATCTTGATCAATTGGTTAAGCAATAAATTGTCAAACCTAGTTTGGCATCACATCTTGATCATAAATCTCAAGGTGTTGAACATATGTTATTCTTTTACTCAACTCAACCAACTCCTTCCTAATTAATGTGAAAATTGAATATCTAACAAAATTAATTCACTTTGGGCTGAGATGGTAAGAGGACCCATTTATGGTATGGTGTGACATATTGAAATGTGCATTAGGGATCAAAATGCAGGAATTGATACAATTGAGTATGTGAGCCTGATTCCATGAGTTTGTAATATGAGTTATGAAAACTGCAAGTTGGGTGGGGGAAGGTGCCAAGAATAAATTATATTTGAACATCAAAGTTTAAAGGGTTAATTATGTTTTTGGTCCCTACAAAATTGCGACCTTGTAAGTTTAGTCCTTACTTAATTTTAATAGCATTTTTAATCCCTGCAAAAAAATTCTACACTCAATATTAGTCCTTACTCAATCCAAATTTGTTTAATTTATGCTTAAACTCTTAAGTTTTTCAACAATTTTTTACAGGCGTGTTAAGAACGTTATTAAAAGGTCATCCGAAAAAAATATCGCAAAAATTTGATTTCTACGTCCATATTTTTGTTACTTATATCTTAAACTTCTGACGTTTTAAAAAATTCATATTTAATTTATTTCATGTTAAAAAATTATAGATTTTAGTAAATGAACCTTTCATAGTGTTCTAAACTTGTATAAAAAGAATCGTTAAAAAATTTAAGAGTTTAAGGATAATTAAACAAAATTTATTTTAGCAGGGACTAAAATTATAAGTAATTTTTTTTTTTGTAGGGATTAAAAAATCTATTAAAATTAAGTAAGGACTAAACTTAGAAGGTCGCAATTTTATAGGGACCAAAAACATATTTAACCCAAGTTTAAAATTAAATTGCAACAGATTGTAATTTCTAATAAGTAGAATGTTGCTAAGATTACACAAGAAAATTTACAATGTTAGTCTGATATGATTTTGTTTTAGATTTTATCAAAAAAGGAGGCTTGTATGTGCAGCTGTAAGCCCTCTTAGCAGGAGAAGTAAATTGCTTATGAAGTATATGAAGTAAATTGCTAAATCAGTTTGATGTTATTGTCGAAAATATGTGTATTATTATAAGCTTGAACTTTATTTGGAATCTTAGCCTCTAAATATTCTCATGACAGAATATGATATATTATCTTACATAGTTGAATATTTCCCCTAGTATTTTTGTGTTTGATCAATTATATGGTTTTGTAGATTGAGTCAAAGTTGAAGGAGGCAACTACAAGGCTTGAGGAACAACTGAAAGAAGAGCAAGCTGCAAGATTAAAAGCAGAAGACAATGCAAAGTTGGCTCAAGAGAAATCAAACGATGAAATACGAGAACTAAGGAAGCATCTTGAGGAGGCGCATGAAGAACTCTGCAAGCGAGGTGGCAAGGGTTGTACCATTCTATGA

Protein sequence

>MS.gene067635.t1

MGGSYVEDDWELASAGSASEVQISANEARTVVLVGRTGNGKSATGNSILGKKVFKSRASSSGVTSSCEMQTAELSDGQIVNVIDTPGLFEVSAGSEFIGKEIAKCIDFAMDGIHAILVVLSVRSRFSEEEENALRSLQTLFGSKIVDYMIVVFTGGDGLEDDEDTLDDYLGRECPESLKRILSLCGNRCVLFDNKTKDEKKRSGQVQQLLSFVNLIVSQNGGQPYTDELFAKLKKGAMKLHSGQRKIDSLEEHSKEEISELKKHMQQTYEEQLKHITEMIESKLKEATTRLEEQLKEEQAARLKAEDNAKLAQEKSNDEIRELRKHLEEAHEELCKRGGKGCTIL