Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072851.t1 | XP_003603333.2 | 98.3 | 479 | 4 | 2 | 1 | 479 | 1 | 475 | 2.60E-204 | 721.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072851.t1 | D2XNR1 | 98.3 | 479 | 4 | 2 | 1 | 479 | 1 | 475 | 6.3e-207 | 721.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072851.t1 | G7JAE5 | 98.3 | 479 | 4 | 2 | 1 | 479 | 1 | 475 | 1.9e-204 | 721.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052053 | MS.gene072851 | 0.834011 | 3.83E-56 | -1.69E-46 |
| MS.gene058628 | MS.gene072851 | 0.806043 | 9.96E-50 | -1.69E-46 |
| MS.gene05884 | MS.gene072851 | 0.801107 | 1.05E-48 | -1.69E-46 |
| MS.gene059428 | MS.gene072851 | 0.808389 | 3.17E-50 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072851.t1 | MTR_3g106430 | 98.539 | 479 | 3 | 2 | 1 | 479 | 1 | 475 | 0.0 | 944 |
| MS.gene072851.t1 | MTR_3g106480 | 92.887 | 478 | 34 | 0 | 1 | 478 | 1 | 478 | 0.0 | 906 |
| MS.gene072851.t1 | MTR_3g106420 | 92.050 | 478 | 38 | 0 | 1 | 478 | 3 | 480 | 0.0 | 870 |
| MS.gene072851.t1 | MTR_3g106485 | 91.632 | 478 | 36 | 2 | 1 | 478 | 1 | 474 | 0.0 | 857 |
| MS.gene072851.t1 | MTR_1g083190 | 91.841 | 478 | 31 | 1 | 1 | 478 | 3 | 472 | 0.0 | 852 |
| MS.gene072851.t1 | MTR_1g073400 | 91.841 | 478 | 35 | 1 | 1 | 478 | 1 | 474 | 0.0 | 845 |
| MS.gene072851.t1 | MTR_1g115145 | 89.144 | 479 | 45 | 3 | 1 | 478 | 1 | 473 | 0.0 | 842 |
| MS.gene072851.t1 | MTR_1g071130 | 86.402 | 478 | 36 | 2 | 1 | 478 | 1 | 449 | 0.0 | 835 |
| MS.gene072851.t1 | MTR_3g106470 | 82.180 | 477 | 29 | 2 | 1 | 477 | 32 | 452 | 0.0 | 742 |
| MS.gene072851.t1 | MTR_8g063830 | 81.075 | 465 | 47 | 5 | 1 | 464 | 1 | 425 | 0.0 | 669 |
| MS.gene072851.t1 | MTR_3g065540 | 66.087 | 115 | 12 | 1 | 40 | 154 | 14 | 101 | 2.38e-41 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072851.t1 | AT5G25260 | 74.419 | 473 | 109 | 2 | 1 | 473 | 1 | 461 | 0.0 | 721 |
| MS.gene072851.t1 | AT5G25250 | 74.841 | 473 | 105 | 2 | 1 | 473 | 1 | 459 | 0.0 | 719 |
| MS.gene072851.t1 | AT5G64870 | 70.763 | 472 | 127 | 1 | 2 | 473 | 3 | 463 | 0.0 | 647 |
Find 120 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAATATTTCTCATATT+TGG | 0.034420 | 3.2:+87582580 | MS.gene072851:CDS |
| GTGAGATTGGTTCGAAATTA+AGG | 0.141080 | 3.2:+87582669 | MS.gene072851:CDS |
| CTGCTTCCATTTGTGTCTTT+TGG | 0.142752 | 3.2:-87582604 | None:intergenic |
| GAGTTTAAACAAGAAGTATT+TGG | 0.198991 | 3.2:+87582479 | MS.gene072851:CDS |
| ACTTCAAAGGTGTAATTTAC+AGG | 0.279006 | 3.2:-87582233 | None:intergenic |
| CATGAATATTTCTCATATTT+GGG | 0.285753 | 3.2:+87582581 | MS.gene072851:CDS |
| AGGGATTACTTAATGATAAA+TGG | 0.291040 | 3.2:+87584090 | MS.gene072851:CDS |
| CTGCTAAAGCCGTAGCTCTA+AGG | 0.291473 | 3.2:+87582909 | MS.gene072851:CDS |
| AACAAGTTCCTTAACATGAT+TGG | 0.309318 | 3.2:-87582381 | None:intergenic |
| AGTTTAAACAAGAAGTATTT+GGG | 0.333241 | 3.2:+87582480 | MS.gene072851:CDS |
| TCACAATACCTTGTGATAAC+TGG | 0.348490 | 3.2:+87582131 | MS.gene072851:CDS |
| AGAGCTATATGCAAAGAAAA+AGG | 0.353826 | 3.2:+87583978 | MS.gene072851:CDS |
| ATCATGAGGGGAAATTAGTT+TGG | 0.369987 | 3.2:-87582351 | None:intergenic |
| TGTAAATCAATAAACCGAAT+TGG | 0.376492 | 3.2:-87582523 | None:intergenic |
| GTAACATTCCCGTTTGTTCA+TGG | 0.378374 | 3.2:-87584287 | None:intergenic |
| AAGATTAGCATTTGGACTAA+TGG | 0.384982 | 3.2:+87584171 | MS.gene072851:CDS |
| TATAGGTACAAGAAGCAAAC+TGG | 0.387176 | 3.2:+87583836 | MS.gene072851:intron |
| TGAGATTGGTTCGAAATTAA+GGG | 0.391205 | 3.2:+87582670 | MS.gene072851:CDS |
| TTAGTCCAAATGCTAATCTT+AGG | 0.400981 | 3.2:-87584168 | None:intergenic |
| CAACTTGAACTAAACCAATT+CGG | 0.410262 | 3.2:+87582509 | MS.gene072851:CDS |
| GGCTGAGGCTAATTCTGAAT+TGG | 0.413100 | 3.2:+87582835 | MS.gene072851:CDS |
| TTGAGCCTAAGATTAGCATT+TGG | 0.413132 | 3.2:+87584163 | MS.gene072851:CDS |
| CGGTCCTCGTGTGGATGATA+AGG | 0.423356 | 3.2:+87582310 | MS.gene072851:CDS |
| ACTAATGGTGGTGATAATAG+TGG | 0.431222 | 3.2:+87584186 | MS.gene072851:CDS |
| GAAGAAAGCGGCTTGGACTA+AGG | 0.439534 | 3.2:+87582862 | MS.gene072851:CDS |
| TACCTTGTGATAACTGGAAT+CGG | 0.450729 | 3.2:+87582137 | MS.gene072851:CDS |
| TAAACTCTCCAATCATGTTA+AGG | 0.453562 | 3.2:+87582373 | MS.gene072851:CDS |
| AATGTTACCACCTGCTTGGA+TGG | 0.462701 | 3.2:+87584302 | MS.gene072851:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.470694 | 3.2:-87582281 | None:intergenic |
| CATGTTAAGGAACTTGTTCA+AGG | 0.472007 | 3.2:+87582386 | MS.gene072851:CDS |
| GCTAAGATGAAAGGTGAGAT+TGG | 0.475874 | 3.2:+87582656 | MS.gene072851:CDS |
| CTCCCCGCTGTCTTCACTAT+CGG | 0.478414 | 3.2:+87582290 | MS.gene072851:CDS |
| TAAGACTGTCCATGAACAAA+CGG | 0.483381 | 3.2:+87584278 | MS.gene072851:CDS |
| GGGAATAACTGAAGGTGCCA+TGG | 0.487818 | 3.2:+87584209 | MS.gene072851:CDS |
| GAAACAACTACACAGCTGTA+AGG | 0.490449 | 3.2:+87584070 | MS.gene072851:CDS |
| CTCAAGTCCGCGTACCGCCT+CGG | 0.491620 | 3.2:-87584145 | None:intergenic |
| TTTGGGCCAAAAGACACAAA+TGG | 0.502028 | 3.2:+87582598 | MS.gene072851:CDS |
| CGGGAATGTTACCACCTGCT+TGG | 0.507160 | 3.2:+87584298 | MS.gene072851:CDS |
| TGCTTCAATGACAATGGAAG+AGG | 0.507417 | 3.2:+87582439 | MS.gene072851:CDS |
| CTCAAAATCAACCATGTACA+AGG | 0.508124 | 3.2:+87582097 | None:intergenic |
| CTAAGGGATGCTGAGTTACA+AGG | 0.508698 | 3.2:+87582926 | MS.gene072851:CDS |
| GAGAGAAGCTGAAGTGGCTG+AGG | 0.509792 | 3.2:+87582820 | MS.gene072851:CDS |
| CTTGTTCAAGGAATCATTGA+AGG | 0.510892 | 3.2:+87582398 | MS.gene072851:CDS |
| TTGGACTAAGGCGGCTCAAG+TGG | 0.511474 | 3.2:+87582874 | MS.gene072851:CDS |
| GAATCAGAGAGAAGCTGAAG+TGG | 0.511635 | 3.2:+87582814 | MS.gene072851:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.513050 | 3.2:+87582740 | MS.gene072851:CDS |
| GGACCGATAGTGAAGACAGC+GGG | 0.513792 | 3.2:-87582293 | None:intergenic |
| AAGACTGTCCATGAACAAAC+GGG | 0.515531 | 3.2:+87584279 | MS.gene072851:CDS |
| GGCTCAAGTGGCCGAAGTTG+AGG | 0.521394 | 3.2:+87582886 | MS.gene072851:CDS |
| GCTGGAGAGGGCGACAAGGA+GGG | 0.521545 | 3.2:+87582758 | MS.gene072851:CDS |
| GAAGACGGAGTAGGATTGAC+CGG | 0.524836 | 3.2:-87582201 | None:intergenic |
| GAGGGCTGGAGAGGGCGACA+AGG | 0.525696 | 3.2:+87582754 | MS.gene072851:CDS |
| GTAACACTTGGGAATGCTCA+AGG | 0.527999 | 3.2:+87584015 | MS.gene072851:CDS |
| TGCTAAAGCCGTAGCTCTAA+GGG | 0.534229 | 3.2:+87582910 | MS.gene072851:CDS |
| GGAATAACTGAAGGTGCCAT+GGG | 0.534697 | 3.2:+87584210 | MS.gene072851:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.2:-87584226 | None:intergenic |
| GGCAAGACTCCCATCCAAGC+AGG | 0.534806 | 3.2:-87584312 | None:intergenic |
| GCAGAGGGAATTGTAACACT+TGG | 0.536418 | 3.2:+87584003 | MS.gene072851:CDS |
| GGCTGGAGAGGGCGACAAGG+AGG | 0.536888 | 3.2:+87582757 | MS.gene072851:CDS |
| GCTCATTGCTTGAACTTCAA+AGG | 0.540493 | 3.2:-87582246 | None:intergenic |
| GCGATGCAGAGGGCTGGAGA+GGG | 0.540981 | 3.2:+87582746 | MS.gene072851:CDS |
| CTCAGCATCCCTTAGAGCTA+CGG | 0.547484 | 3.2:-87582918 | None:intergenic |
| TGCGATGCAGAGGGCTGGAG+AGG | 0.550159 | 3.2:+87582745 | MS.gene072851:CDS |
| ATTGAACGCTAGCTTTGCTA+AGG | 0.553614 | 3.2:-87583003 | None:intergenic |
| TAAAGCTTGCAAAGAAAGCA+TGG | 0.553863 | 3.2:+87582171 | MS.gene072851:CDS |
| TTAGTTTGGCGTATTTGAGA+AGG | 0.553890 | 3.2:-87582337 | None:intergenic |
| TAAAGTGAGGACTGAAGTGA+AGG | 0.556664 | 3.2:+87582784 | MS.gene072851:CDS |
| TGGCTAAGAAGAAAGCGGCT+TGG | 0.558254 | 3.2:+87582855 | MS.gene072851:CDS |
| AAACAGTTAGTTGATGTGCC+AGG | 0.562976 | 3.2:+87582557 | MS.gene072851:CDS |
| TTTGTATGAGAAGAAGGCAG+AGG | 0.567950 | 3.2:+87583894 | MS.gene072851:CDS |
| ATGTTACCACCTGCTTGGAT+GGG | 0.569893 | 3.2:+87584303 | MS.gene072851:CDS |
| GGAGCTGTACAAGAAACAAA+AGG | 0.571542 | 3.2:+87583858 | MS.gene072851:CDS |
| TCATGGACAGTCTTAAACAA+AGG | 0.574375 | 3.2:-87584270 | None:intergenic |
| TGGAAGCAGCGAATCAAGCA+AGG | 0.574713 | 3.2:+87582618 | MS.gene072851:CDS |
| CTTCACTATCGGTCCTCGTG+TGG | 0.576587 | 3.2:+87582301 | MS.gene072851:CDS |
| TGAGAGGTCGAAGACGGAGT+AGG | 0.579128 | 3.2:-87582210 | None:intergenic |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.2:+87584228 | MS.gene072851:CDS |
| TAACACTTGGGAATGCTCAA+GGG | 0.580610 | 3.2:+87584016 | MS.gene072851:CDS |
| CCTCGCTGCTTCAATGACAA+TGG | 0.585018 | 3.2:+87582433 | MS.gene072851:CDS |
| AAACAACTACACAGCTGTAA+GGG | 0.585417 | 3.2:+87584071 | MS.gene072851:CDS |
| CTAATGGTGGTGATAATAGT+GGG | 0.587233 | 3.2:+87584187 | MS.gene072851:CDS |
| GGCTTTAGCAGCCTCAACTT+CGG | 0.588855 | 3.2:-87582897 | None:intergenic |
| ATTAGCATTTGGACTAATGG+TGG | 0.590526 | 3.2:+87584174 | MS.gene072851:CDS |
| GATTGGAGAGTTTATCATGA+GGG | 0.592992 | 3.2:-87582364 | None:intergenic |
| AGTGCACTTCTGAATGCACT+TGG | 0.593608 | 3.2:+87584048 | MS.gene072851:CDS |
| CAAAGGTTATTGCGATGCAG+AGG | 0.594400 | 3.2:+87582735 | MS.gene072851:CDS |
| TTCCGATTCCAGTTATCACA+AGG | 0.603437 | 3.2:-87582139 | None:intergenic |
| GTATCAGAAGCTAAGATGAA+AGG | 0.607033 | 3.2:+87582647 | MS.gene072851:CDS |
| AGTTACAAGGTGAAGTTGAG+AGG | 0.609202 | 3.2:+87582939 | MS.gene072851:CDS |
| ATTGGAGAGTTTATCATGAG+GGG | 0.615848 | 3.2:-87582363 | None:intergenic |
| TGAATTGGCTAAGAAGAAAG+CGG | 0.615999 | 3.2:+87582850 | MS.gene072851:CDS |
| CAGAGGGAATTGTAACACTT+GGG | 0.616845 | 3.2:+87584004 | MS.gene072851:CDS |
| ATAGGTACAAGAAGCAAACT+GGG | 0.617338 | 3.2:+87583837 | MS.gene072851:intron |
| TACAGGTGAGAGGTCGAAGA+CGG | 0.620713 | 3.2:-87582216 | None:intergenic |
| AAAGGTTATTGCGATGCAGA+GGG | 0.625617 | 3.2:+87582736 | MS.gene072851:CDS |
| GTACAAGAAACAAAAGGAGG+CGG | 0.626062 | 3.2:+87583864 | MS.gene072851:CDS |
| AACACTTGGGAATGCTCAAG+GGG | 0.627744 | 3.2:+87584017 | MS.gene072851:CDS |
| AATGGTGGTGATAATAGTGG+GGG | 0.629638 | 3.2:+87584189 | MS.gene072851:CDS |
| AGGTGTAATTTACAGGTGAG+AGG | 0.630097 | 3.2:-87582226 | None:intergenic |
| ATTGGTTCGAAATTAAGGGA+AGG | 0.631020 | 3.2:+87582674 | MS.gene072851:CDS |
| TAATGGTGGTGATAATAGTG+GGG | 0.634711 | 3.2:+87584188 | MS.gene072851:CDS |
| GATTACTTAATGATAAATGG+TGG | 0.642965 | 3.2:+87584093 | MS.gene072851:CDS |
| TGGACAGTCTTAAACAAAGG+TGG | 0.647859 | 3.2:-87584267 | None:intergenic |
| TATGAGAAATATTCATGACC+TGG | 0.653740 | 3.2:-87582575 | None:intergenic |
| ATTAATGCCGAGGCGGTACG+CGG | 0.654409 | 3.2:+87584138 | MS.gene072851:CDS |
| GATTGCGAAGATTAATGCCG+AGG | 0.654995 | 3.2:+87584128 | MS.gene072851:CDS |
| AAGACGGAGTAGGATTGACC+GGG | 0.657113 | 3.2:-87582200 | None:intergenic |
| TAGCGTTCAATATGAAACCA+AGG | 0.661629 | 3.2:+87583015 | MS.gene072851:CDS |
| AAGAAAGCATGGATTCTACC+CGG | 0.664070 | 3.2:+87582182 | MS.gene072851:CDS |
| GGAAGCAGCGAATCAAGCAA+GGG | 0.666342 | 3.2:+87582619 | MS.gene072851:CDS |
| TGATTGGAGAGTTTATCATG+AGG | 0.672105 | 3.2:-87582365 | None:intergenic |
| AAGACTCCCATCCAAGCAGG+TGG | 0.679480 | 3.2:-87584309 | None:intergenic |
| TGCGAAGATTAATGCCGAGG+CGG | 0.680837 | 3.2:+87584131 | MS.gene072851:CDS |
| ACAAGGAGGGAATTAAAGTG+AGG | 0.693697 | 3.2:+87582771 | MS.gene072851:CDS |
| CTTTCCTTATCATCCACACG+AGG | 0.701431 | 3.2:-87582314 | None:intergenic |
| CCATTGTCATTGAAGCAGCG+AGG | 0.707893 | 3.2:-87582433 | None:intergenic |
| GACCGATAGTGAAGACAGCG+GGG | 0.713902 | 3.2:-87582292 | None:intergenic |
| GCTGTACAAGAAACAAAAGG+AGG | 0.725038 | 3.2:+87583861 | MS.gene072851:CDS |
| GAAAGCGGCTTGGACTAAGG+CGG | 0.747622 | 3.2:+87582865 | MS.gene072851:CDS |
| AGGACCGATAGTGAAGACAG+CGG | 0.753084 | 3.2:-87582294 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAGTTAATACCTATT+AGG | + | chr3.2:87583739-87583758 | MS.gene072851:intron | 15.0% |
| !! | TAGGTATTAACTATTAATTT+AGG | - | chr3.2:87583737-87583756 | None:intergenic | 15.0% |
| !!! | GTTGCATTTTTTTAAATAAT+TGG | + | chr3.2:87583467-87583486 | MS.gene072851:intron | 15.0% |
| !!! | TGATTATTGATTCTTTTATA+TGG | + | chr3.2:87583434-87583453 | MS.gene072851:intron | 15.0% |
| !! | CATGAATATTTCTCATATTT+GGG | + | chr3.2:87582581-87582600 | MS.gene072851:CDS | 20.0% |
| !! | TCATGAATATTTCTCATATT+TGG | + | chr3.2:87582580-87582599 | MS.gene072851:CDS | 20.0% |
| !!! | AGTTTAAACAAGAAGTATTT+GGG | + | chr3.2:87582480-87582499 | MS.gene072851:CDS | 20.0% |
| ! | AATTCTCTATTAAGCTGTTA+TGG | - | chr3.2:87583523-87583542 | None:intergenic | 25.0% |
| ! | AGGGATTACTTAATGATAAA+TGG | + | chr3.2:87584090-87584109 | MS.gene072851:CDS | 25.0% |
| ! | ATGCATTATACAATTACAAG+TGG | + | chr3.2:87583691-87583710 | MS.gene072851:intron | 25.0% |
| ! | ATTTATTTACTAGGCCTAAT+AGG | - | chr3.2:87583756-87583775 | None:intergenic | 25.0% |
| ! | CATTTGGTTAAACCTTAAAA+GGG | - | chr3.2:87583294-87583313 | None:intergenic | 25.0% |
| ! | GATTACTTAATGATAAATGG+TGG | + | chr3.2:87584093-87584112 | MS.gene072851:CDS | 25.0% |
| ! | TAGCAACAAGATTAATAGTT+TGG | + | chr3.2:87583169-87583188 | MS.gene072851:intron | 25.0% |
| ! | TCATTTGGTTAAACCTTAAA+AGG | - | chr3.2:87583295-87583314 | None:intergenic | 25.0% |
| ! | TGTAAATCAATAAACCGAAT+TGG | - | chr3.2:87582526-87582545 | None:intergenic | 25.0% |
| !!! | GAGTTTAAACAAGAAGTATT+TGG | + | chr3.2:87582479-87582498 | MS.gene072851:CDS | 25.0% |
| !!! | TTTTTTCGTGATTGAAATTC+TGG | + | chr3.2:87583809-87583828 | MS.gene072851:intron | 25.0% |
| AAAAATTGATGCAGAGACAA+AGG | + | chr3.2:87582718-87582737 | MS.gene072851:CDS | 30.0% | |
| AACAAGTTCCTTAACATGAT+TGG | - | chr3.2:87582384-87582403 | None:intergenic | 30.0% | |
| AAGATTAGCATTTGGACTAA+TGG | + | chr3.2:87584171-87584190 | MS.gene072851:CDS | 30.0% | |
| AGAGCTATATGCAAAGAAAA+AGG | + | chr3.2:87583978-87583997 | MS.gene072851:CDS | 30.0% | |
| ATATTATTCTATCGAGTAGC+GGG | - | chr3.2:87583673-87583692 | None:intergenic | 30.0% | |
| ATTGAAATTCTGGATGGTAT+AGG | + | chr3.2:87583819-87583838 | MS.gene072851:intron | 30.0% | |
| CAACTTGAACTAAACCAATT+CGG | + | chr3.2:87582509-87582528 | MS.gene072851:CDS | 30.0% | |
| CATATTATTCTATCGAGTAG+CGG | - | chr3.2:87583674-87583693 | None:intergenic | 30.0% | |
| TAAACTCTCCAATCATGTTA+AGG | + | chr3.2:87582373-87582392 | MS.gene072851:CDS | 30.0% | |
| TACTATAATGAGATCACAGT+TGG | + | chr3.2:87583618-87583637 | MS.gene072851:intron | 30.0% | |
| TATGAGAAATATTCATGACC+TGG | - | chr3.2:87582578-87582597 | None:intergenic | 30.0% | |
| TTAGTCCAAATGCTAATCTT+AGG | - | chr3.2:87584171-87584190 | None:intergenic | 30.0% | |
| ! | ACTTCAAAGGTGTAATTTAC+AGG | - | chr3.2:87582236-87582255 | None:intergenic | 30.0% |
| ! | TCAACACTATTTTACAACCT+TGG | + | chr3.2:87583542-87583561 | MS.gene072851:intron | 30.0% |
| !! | GTTTTAAACTCTCCCTTTTA+AGG | + | chr3.2:87583279-87583298 | MS.gene072851:intron | 30.0% |
| !! | TATTTTACAACCTTGGTGAT+TGG | + | chr3.2:87583549-87583568 | MS.gene072851:intron | 30.0% |
| !! | TGAGATTGGTTCGAAATTAA+GGG | + | chr3.2:87582670-87582689 | MS.gene072851:CDS | 30.0% |
| AAACAACTACACAGCTGTAA+GGG | + | chr3.2:87584071-87584090 | MS.gene072851:CDS | 35.0% | |
| ACTCATGATCAATGGACAAT+GGG | + | chr3.2:87583320-87583339 | MS.gene072851:intron | 35.0% | |
| ATAGGTACAAGAAGCAAACT+GGG | + | chr3.2:87583837-87583856 | MS.gene072851:intron | 35.0% | |
| ATCATGAGGGGAAATTAGTT+TGG | - | chr3.2:87582354-87582373 | None:intergenic | 35.0% | |
| ATTAGCATTTGGACTAATGG+TGG | + | chr3.2:87584174-87584193 | MS.gene072851:CDS | 35.0% | |
| ATTGGAGAGTTTATCATGAG+GGG | - | chr3.2:87582366-87582385 | None:intergenic | 35.0% | |
| CTTGTTCAAGGAATCATTGA+AGG | + | chr3.2:87582398-87582417 | MS.gene072851:CDS | 35.0% | |
| GATTGGAGAGTTTATCATGA+GGG | - | chr3.2:87582367-87582386 | None:intergenic | 35.0% | |
| GCTATATGCAAAGAAAAAGG+AGG | + | chr3.2:87583981-87584000 | MS.gene072851:CDS | 35.0% | |
| GTATCAGAAGCTAAGATGAA+AGG | + | chr3.2:87582647-87582666 | MS.gene072851:CDS | 35.0% | |
| TAAAGCTTGCAAAGAAAGCA+TGG | + | chr3.2:87582171-87582190 | MS.gene072851:CDS | 35.0% | |
| TAAGACTGTCCATGAACAAA+CGG | + | chr3.2:87584278-87584297 | MS.gene072851:CDS | 35.0% | |
| TACCTTGTGATAACTGGAAT+CGG | + | chr3.2:87582137-87582156 | MS.gene072851:CDS | 35.0% | |
| TAGCGTTCAATATGAAACCA+AGG | + | chr3.2:87583015-87583034 | MS.gene072851:CDS | 35.0% | |
| TATAGGTACAAGAAGCAAAC+TGG | + | chr3.2:87583836-87583855 | MS.gene072851:intron | 35.0% | |
| TATTATTCTATCGAGTAGCG+GGG | - | chr3.2:87583672-87583691 | None:intergenic | 35.0% | |
| TCACAATACCTTGTGATAAC+TGG | + | chr3.2:87582131-87582150 | MS.gene072851:CDS | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | - | chr3.2:87584273-87584292 | None:intergenic | 35.0% | |
| TGAATTGGCTAAGAAGAAAG+CGG | + | chr3.2:87582850-87582869 | MS.gene072851:CDS | 35.0% | |
| TGATTGGAGAGTTTATCATG+AGG | - | chr3.2:87582368-87582387 | None:intergenic | 35.0% | |
| TGCATGTACTAAACTAACCT+TGG | - | chr3.2:87583035-87583054 | None:intergenic | 35.0% | |
| TTCGTGATTGAAATTCTGGA+TGG | + | chr3.2:87583813-87583832 | MS.gene072851:intron | 35.0% | |
| TTGAGCCTAAGATTAGCATT+TGG | + | chr3.2:87584163-87584182 | MS.gene072851:CDS | 35.0% | |
| TTGATTGATACCAATCACCA+AGG | - | chr3.2:87583562-87583581 | None:intergenic | 35.0% | |
| ! | ACTAATGGTGGTGATAATAG+TGG | + | chr3.2:87584186-87584205 | MS.gene072851:CDS | 35.0% |
| ! | AGCGATTTTGTATGAGAAGA+AGG | + | chr3.2:87583888-87583907 | MS.gene072851:CDS | 35.0% |
| ! | CATGTTAAGGAACTTGTTCA+AGG | + | chr3.2:87582386-87582405 | MS.gene072851:CDS | 35.0% |
| ! | CTAATGGTGGTGATAATAGT+GGG | + | chr3.2:87584187-87584206 | MS.gene072851:CDS | 35.0% |
| ! | TAATGGTGGTGATAATAGTG+GGG | + | chr3.2:87584188-87584207 | MS.gene072851:CDS | 35.0% |
| ! | TTAGTTTGGCGTATTTGAGA+AGG | - | chr3.2:87582340-87582359 | None:intergenic | 35.0% |
| !! | ATTGGTTCGAAATTAAGGGA+AGG | + | chr3.2:87582674-87582693 | MS.gene072851:CDS | 35.0% |
| !! | GTGAGATTGGTTCGAAATTA+AGG | + | chr3.2:87582669-87582688 | MS.gene072851:CDS | 35.0% |
| AAAGGTTATTGCGATGCAGA+GGG | + | chr3.2:87582736-87582755 | MS.gene072851:CDS | 40.0% | |
| AAGACTGTCCATGAACAAAC+GGG | + | chr3.2:87584279-87584298 | MS.gene072851:CDS | 40.0% | |
| ACAAGGAGGGAATTAAAGTG+AGG | + | chr3.2:87582771-87582790 | MS.gene072851:CDS | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | - | chr3.2:87584229-87584248 | None:intergenic | 40.0% | |
| AGGTGTAATTTACAGGTGAG+AGG | - | chr3.2:87582229-87582248 | None:intergenic | 40.0% | |
| AGTTACAAGGTGAAGTTGAG+AGG | + | chr3.2:87582939-87582958 | MS.gene072851:CDS | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | + | chr3.2:87584228-87584247 | MS.gene072851:CDS | 40.0% | |
| ATTATTCTATCGAGTAGCGG+GGG | - | chr3.2:87583671-87583690 | None:intergenic | 40.0% | |
| CACTCATGATCAATGGACAA+TGG | + | chr3.2:87583319-87583338 | MS.gene072851:intron | 40.0% | |
| CAGAGGGAATTGTAACACTT+GGG | + | chr3.2:87584004-87584023 | MS.gene072851:CDS | 40.0% | |
| GAAACAACTACACAGCTGTA+AGG | + | chr3.2:87584070-87584089 | MS.gene072851:CDS | 40.0% | |
| GATCATGAGTGTGACTCATT+TGG | - | chr3.2:87583310-87583329 | None:intergenic | 40.0% | |
| GCTAAGATGAAAGGTGAGAT+TGG | + | chr3.2:87582656-87582675 | MS.gene072851:CDS | 40.0% | |
| GCTCATTGCTTGAACTTCAA+AGG | - | chr3.2:87582249-87582268 | None:intergenic | 40.0% | |
| GCTGTACAAGAAACAAAAGG+AGG | + | chr3.2:87583861-87583880 | MS.gene072851:CDS | 40.0% | |
| GGAGCTGTACAAGAAACAAA+AGG | + | chr3.2:87583858-87583877 | MS.gene072851:CDS | 40.0% | |
| GTAACATTCCCGTTTGTTCA+TGG | - | chr3.2:87584290-87584309 | None:intergenic | 40.0% | |
| GTACAAGAAACAAAAGGAGG+CGG | + | chr3.2:87583864-87583883 | MS.gene072851:CDS | 40.0% | |
| TAAAGTGAGGACTGAAGTGA+AGG | + | chr3.2:87582784-87582803 | MS.gene072851:CDS | 40.0% | |
| TAACACTTGGGAATGCTCAA+GGG | + | chr3.2:87584016-87584035 | MS.gene072851:CDS | 40.0% | |
| TGAGTCACACTCATGATCAA+TGG | + | chr3.2:87583312-87583331 | MS.gene072851:intron | 40.0% | |
| TGCTTCAATGACAATGGAAG+AGG | + | chr3.2:87582439-87582458 | MS.gene072851:CDS | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | - | chr3.2:87584270-87584289 | None:intergenic | 40.0% | |
| TTCCGATTCCAGTTATCACA+AGG | - | chr3.2:87582142-87582161 | None:intergenic | 40.0% | |
| TTTGGGCCAAAAGACACAAA+TGG | + | chr3.2:87582598-87582617 | MS.gene072851:CDS | 40.0% | |
| TTTGTATGAGAAGAAGGCAG+AGG | + | chr3.2:87583894-87583913 | MS.gene072851:CDS | 40.0% | |
| ! | AAACAGTTAGTTGATGTGCC+AGG | + | chr3.2:87582557-87582576 | MS.gene072851:CDS | 40.0% |
| ! | AAGAAAGCATGGATTCTACC+CGG | + | chr3.2:87582182-87582201 | MS.gene072851:CDS | 40.0% |
| ! | AATAGTGGGGGAATAACTGA+AGG | + | chr3.2:87584201-87584220 | MS.gene072851:CDS | 40.0% |
| ! | AATGGTGGTGATAATAGTGG+GGG | + | chr3.2:87584189-87584208 | MS.gene072851:CDS | 40.0% |
| ! | ACAATGGAAGAGGTTTTCAG+AGG | + | chr3.2:87582449-87582468 | MS.gene072851:CDS | 40.0% |
| ! | CTGCTTCCATTTGTGTCTTT+TGG | - | chr3.2:87582607-87582626 | None:intergenic | 40.0% |
| !! | ATTGAACGCTAGCTTTGCTA+AGG | - | chr3.2:87583006-87583025 | None:intergenic | 40.0% |
| AACACTTGGGAATGCTCAAG+GGG | + | chr3.2:87584017-87584036 | MS.gene072851:CDS | 45.0% | |
| AATGTTACCACCTGCTTGGA+TGG | + | chr3.2:87584302-87584321 | MS.gene072851:CDS | 45.0% | |
| AGTGCACTTCTGAATGCACT+TGG | + | chr3.2:87584048-87584067 | MS.gene072851:CDS | 45.0% | |
| ATGTTACCACCTGCTTGGAT+GGG | + | chr3.2:87584303-87584322 | MS.gene072851:CDS | 45.0% | |
| CAAAGGTTATTGCGATGCAG+AGG | + | chr3.2:87582735-87582754 | MS.gene072851:CDS | 45.0% | |
| CTAAGGGATGCTGAGTTACA+AGG | + | chr3.2:87582926-87582945 | MS.gene072851:CDS | 45.0% | |
| CTTTCCTTATCATCCACACG+AGG | - | chr3.2:87582317-87582336 | None:intergenic | 45.0% | |
| GAATCAGAGAGAAGCTGAAG+TGG | + | chr3.2:87582814-87582833 | MS.gene072851:CDS | 45.0% | |
| GATTGCGAAGATTAATGCCG+AGG | + | chr3.2:87584128-87584147 | MS.gene072851:CDS | 45.0% | |
| GCAAAGAAAAAGGAGGCAGA+GGG | + | chr3.2:87583988-87584007 | MS.gene072851:CDS | 45.0% | |
| GCAGAGGGAATTGTAACACT+TGG | + | chr3.2:87584003-87584022 | MS.gene072851:CDS | 45.0% | |
| GGCTGAGGCTAATTCTGAAT+TGG | + | chr3.2:87582835-87582854 | MS.gene072851:CDS | 45.0% | |
| GTAACACTTGGGAATGCTCA+AGG | + | chr3.2:87584015-87584034 | MS.gene072851:CDS | 45.0% | |
| TGCAAAGAAAAAGGAGGCAG+AGG | + | chr3.2:87583987-87584006 | MS.gene072851:CDS | 45.0% | |
| !! | GGAATAACTGAAGGTGCCAT+GGG | + | chr3.2:87584210-87584229 | MS.gene072851:CDS | 45.0% |
| !! | TGCTAAAGCCGTAGCTCTAA+GGG | + | chr3.2:87582910-87582929 | MS.gene072851:CDS | 45.0% |
| !! | ATATATATAATTTATTTACT+AGG | - | chr3.2:87583765-87583784 | None:intergenic | 5.0% |
| !!! | ATAAAAGATTAATATTTTTA+AGG | + | chr3.2:87583345-87583364 | MS.gene072851:intron | 5.0% |
| AAGACAGCGGGGAGAACAAA+AGG | - | chr3.2:87582284-87582303 | None:intergenic | 50.0% | |
| AAGACGGAGTAGGATTGACC+GGG | - | chr3.2:87582203-87582222 | None:intergenic | 50.0% | |
| AGGACCGATAGTGAAGACAG+CGG | - | chr3.2:87582297-87582316 | None:intergenic | 50.0% | |
| CCATTGTCATTGAAGCAGCG+AGG | - | chr3.2:87582436-87582455 | None:intergenic | 50.0% | |
| CCTCGCTGCTTCAATGACAA+TGG | + | chr3.2:87582433-87582452 | MS.gene072851:CDS | 50.0% | |
| CTCAGCATCCCTTAGAGCTA+CGG | - | chr3.2:87582921-87582940 | None:intergenic | 50.0% | |
| GAAGACGGAGTAGGATTGAC+CGG | - | chr3.2:87582204-87582223 | None:intergenic | 50.0% | |
| GGAAGCAGCGAATCAAGCAA+GGG | + | chr3.2:87582619-87582638 | MS.gene072851:CDS | 50.0% | |
| TACAGGTGAGAGGTCGAAGA+CGG | - | chr3.2:87582219-87582238 | None:intergenic | 50.0% | |
| TGCGAAGATTAATGCCGAGG+CGG | + | chr3.2:87584131-87584150 | MS.gene072851:CDS | 50.0% | |
| TGGAAGCAGCGAATCAAGCA+AGG | + | chr3.2:87582618-87582637 | MS.gene072851:CDS | 50.0% | |
| TGGCTAAGAAGAAAGCGGCT+TGG | + | chr3.2:87582855-87582874 | MS.gene072851:CDS | 50.0% | |
| ! | CTGCTAAAGCCGTAGCTCTA+AGG | + | chr3.2:87582909-87582928 | MS.gene072851:CDS | 50.0% |
| ! | GAAGAAAGCGGCTTGGACTA+AGG | + | chr3.2:87582862-87582881 | MS.gene072851:CDS | 50.0% |
| ! | GGCTTTAGCAGCCTCAACTT+CGG | - | chr3.2:87582900-87582919 | None:intergenic | 50.0% |
| ! | TAGCGGGGGAGCTAACTTTT+GGG | - | chr3.2:87583657-87583676 | None:intergenic | 50.0% |
| !! | GGGAATAACTGAAGGTGCCA+TGG | + | chr3.2:87584209-87584228 | MS.gene072851:CDS | 50.0% |
| AAGACTCCCATCCAAGCAGG+TGG | - | chr3.2:87584312-87584331 | None:intergenic | 55.0% | |
| ATTAATGCCGAGGCGGTACG+CGG | + | chr3.2:87584138-87584157 | MS.gene072851:CDS | 55.0% | |
| CGGGAATGTTACCACCTGCT+TGG | + | chr3.2:87584298-87584317 | MS.gene072851:CDS | 55.0% | |
| CGGTCCTCGTGTGGATGATA+AGG | + | chr3.2:87582310-87582329 | MS.gene072851:CDS | 55.0% | |
| CTCCCCGCTGTCTTCACTAT+CGG | + | chr3.2:87582290-87582309 | MS.gene072851:CDS | 55.0% | |
| CTTCACTATCGGTCCTCGTG+TGG | + | chr3.2:87582301-87582320 | MS.gene072851:CDS | 55.0% | |
| GACCGATAGTGAAGACAGCG+GGG | - | chr3.2:87582295-87582314 | None:intergenic | 55.0% | |
| GAGAGAAGCTGAAGTGGCTG+AGG | + | chr3.2:87582820-87582839 | MS.gene072851:CDS | 55.0% | |
| GGACCGATAGTGAAGACAGC+GGG | - | chr3.2:87582296-87582315 | None:intergenic | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | + | chr3.2:87582740-87582759 | MS.gene072851:CDS | 55.0% | |
| TGAGAGGTCGAAGACGGAGT+AGG | - | chr3.2:87582213-87582232 | None:intergenic | 55.0% | |
| TTGGACTAAGGCGGCTCAAG+TGG | + | chr3.2:87582874-87582893 | MS.gene072851:CDS | 55.0% | |
| ! | GAAAGCGGCTTGGACTAAGG+CGG | + | chr3.2:87582865-87582884 | MS.gene072851:CDS | 55.0% |
| !! | GTAGCGGGGGAGCTAACTTT+TGG | - | chr3.2:87583658-87583677 | None:intergenic | 55.0% |
| GGCAAGACTCCCATCCAAGC+AGG | - | chr3.2:87584315-87584334 | None:intergenic | 60.0% | |
| GGCTCAAGTGGCCGAAGTTG+AGG | + | chr3.2:87582886-87582905 | MS.gene072851:CDS | 60.0% | |
| CTCAAGTCCGCGTACCGCCT+CGG | - | chr3.2:87584148-87584167 | None:intergenic | 65.0% | |
| GCGATGCAGAGGGCTGGAGA+GGG | + | chr3.2:87582746-87582765 | MS.gene072851:CDS | 65.0% | |
| GCTGGAGAGGGCGACAAGGA+GGG | + | chr3.2:87582758-87582777 | MS.gene072851:CDS | 65.0% | |
| TGCGATGCAGAGGGCTGGAG+AGG | + | chr3.2:87582745-87582764 | MS.gene072851:CDS | 65.0% | |
| GAGGGCTGGAGAGGGCGACA+AGG | + | chr3.2:87582754-87582773 | MS.gene072851:CDS | 70.0% | |
| GGCTGGAGAGGGCGACAAGG+AGG | + | chr3.2:87582757-87582776 | MS.gene072851:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 87582110 | 87584353 | 87582110 | ID=MS.gene072851 |
| chr3.2 | mRNA | 87582110 | 87584353 | 87582110 | ID=MS.gene072851.t1;Parent=MS.gene072851 |
| chr3.2 | exon | 87582110 | 87583036 | 87582110 | ID=MS.gene072851.t1.exon1;Parent=MS.gene072851.t1 |
| chr3.2 | CDS | 87582110 | 87583036 | 87582110 | ID=cds.MS.gene072851.t1;Parent=MS.gene072851.t1 |
| chr3.2 | exon | 87583841 | 87584353 | 87583841 | ID=MS.gene072851.t1.exon2;Parent=MS.gene072851.t1 |
| chr3.2 | CDS | 87583841 | 87584353 | 87583841 | ID=cds.MS.gene072851.t1;Parent=MS.gene072851.t1 |
| Gene Sequence |
| Protein sequence |
