AlfalfaGEDB | MS.gene061658

M. sativa cultivar XinJiangDaYe / MS.gene061658

KEGG: -
GO: -
PFAM: PF06454.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061658.t1	XP_013466683.1	97	267	8	0	1	267	1	267	3.30E-140	507.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061658.t1	Q9ZUM2	81.0	252	48	0	16	267	22	273	2.2e-116	419.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061658.t1	A0A072VRG4	97.0	267	8	0	1	267	1	267	2.4e-140	507.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049230	MS.gene061658	-0.802258	6.11E-49	-1.69E-46
MS.gene049297	MS.gene061658	-0.83315	6.29E-56	-1.69E-46
MS.gene049378	MS.gene061658	-0.834281	3.28E-56	-1.69E-46
MS.gene049669	MS.gene061658	-0.819374	1.20E-52	-1.69E-46
MS.gene050226	MS.gene061658	-0.809185	2.14E-50	-1.69E-46
MS.gene050227	MS.gene061658	-0.839582	1.45E-57	-1.69E-46
MS.gene050228	MS.gene061658	-0.839802	1.27E-57	-1.69E-46
MS.gene050303	MS.gene061658	-0.814441	1.54E-51	-1.69E-46
MS.gene050330	MS.gene061658	0.859306	4.53E-63	-1.69E-46
MS.gene050442	MS.gene061658	-0.812879	3.40E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061658.t1	MTR_1g033830	97.004	267	8	0	1	267	1	267	0.0	528
MS.gene061658.t1	MTR_1g033830	96.413	223	8	0	1	223	1	223	1.10e-156	435
MS.gene061658.t1	MTR_4g094212	55.466	247	110	0	21	267	13	259	9.15e-102	298
MS.gene061658.t1	MTR_2g022880	56.962	237	97	1	31	267	23	254	1.28e-94	280
MS.gene061658.t1	MTR_4g131930	55.285	246	110	0	22	267	3	248	8.67e-90	267
MS.gene061658.t1	MTR_2g022880	56.744	215	88	1	31	245	23	232	1.52e-82	248
MS.gene061658.t1	MTR_4g131930	54.595	185	84	0	83	267	1	185	6.01e-63	197

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061658.t1	AT2G02180	81.275	251	47	17	267	23	273	2.76e-155	434
MS.gene061658.t1	AT1G14530	78.968	252	53	16	267	12	263	7.81e-143	402
MS.gene061658.t1	AT1G14530	78.855	227	48	16	242	12	238	4.23e-135	381
MS.gene061658.t1	AT4G21790	57.200	250	107	18	267	12	261	3.07e-105	307

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Find 67 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGCGAACCTTAATGTGA+TGG	0.562294	1.3:+18726521	MS.gene061658:CDS
AACTCACCGATTCCTCAACC+TGG	0.591877	1.3:+18719748	MS.gene061658:CDS
AAGATGCGGTCTTGCCAAAC+CGG	0.453837	1.3:-18719792	None:intergenic
ACATCGACGATTCTCCGGTT+TGG	0.476060	1.3:+18719778	MS.gene061658:CDS
ACATTAATTGTATAGAAACT+TGG	0.472412	1.3:-18721529	None:intergenic
ACCGCGCCTGTCACCGACGA+CGG	0.629626	1.3:-18719702	None:intergenic
ACCGTAGAGAAGAAAGCCAA+GGG	0.603119	1.3:-18724374	None:intergenic
ACCTCGCCGTCGTCGGTGAC+AGG	0.458409	1.3:+18719696	MS.gene061658:CDS
ACTTGGCTTCAGTCCATCAG+TGG	0.611275	1.3:-18721512	None:intergenic
AGAATGACTAGTACGCTGAC+TGG	0.622590	1.3:-18724215	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	18719684	18726575	18719684	ID=MS.gene061658
chr1.3	mRNA	18719684	18726575	18719684	ID=MS.gene061658.t1;Parent=MS.gene061658
chr1.3	exon	18719684	18719860	18719684	ID=MS.gene061658.t1.exon1;Parent=MS.gene061658.t1
chr1.3	CDS	18719684	18719860	18719684	ID=cds.MS.gene061658.t1;Parent=MS.gene061658.t1
chr1.3	exon	18720000	18720090	18720000	ID=MS.gene061658.t1.exon2;Parent=MS.gene061658.t1
chr1.3	CDS	18720000	18720090	18720000	ID=cds.MS.gene061658.t1;Parent=MS.gene061658.t1
chr1.3	exon	18720214	18720266	18720214	ID=MS.gene061658.t1.exon3;Parent=MS.gene061658.t1
chr1.3	CDS	18720214	18720266	18720214	ID=cds.MS.gene061658.t1;Parent=MS.gene061658.t1
chr1.3	exon	18721290	18721382	18721290	ID=MS.gene061658.t1.exon4;Parent=MS.gene061658.t1
chr1.3	CDS	18721290	18721382	18721290	ID=cds.MS.gene061658.t1;Parent=MS.gene061658.t1
chr1.3	exon	18721499	18721570	18721499	ID=MS.gene061658.t1.exon5;Parent=MS.gene061658.t1
chr1.3	CDS	18721499	18721570	18721499	ID=cds.MS.gene061658.t1;Parent=MS.gene061658.t1
chr1.3	exon	18724185	18724257	18724185	ID=MS.gene061658.t1.exon6;Parent=MS.gene061658.t1
chr1.3	CDS	18724185	18724257	18724185	ID=cds.MS.gene061658.t1;Parent=MS.gene061658.t1
chr1.3	exon	18724356	18724401	18724356	ID=MS.gene061658.t1.exon7;Parent=MS.gene061658.t1
chr1.3	CDS	18724356	18724401	18724356	ID=cds.MS.gene061658.t1;Parent=MS.gene061658.t1
chr1.3	exon	18724916	18724979	18724916	ID=MS.gene061658.t1.exon8;Parent=MS.gene061658.t1
chr1.3	CDS	18724916	18724979	18724916	ID=cds.MS.gene061658.t1;Parent=MS.gene061658.t1
chr1.3	exon	18726361	18726414	18726361	ID=MS.gene061658.t1.exon9;Parent=MS.gene061658.t1
chr1.3	CDS	18726361	18726414	18726361	ID=cds.MS.gene061658.t1;Parent=MS.gene061658.t1
chr1.3	exon	18726498	18726575	18726498	ID=MS.gene061658.t1.exon10;Parent=MS.gene061658.t1
chr1.3	CDS	18726498	18726575	18726498	ID=cds.MS.gene061658.t1;Parent=MS.gene061658.t1

Gene Sequence

>MS.gene061658

ATGACCAACAACACCTCGCCGTCGTCGGTGACAGGCGCGGTGGTGAACGCGGTGGCAGCAATTGAACTCACCGATTCCTCAACCTGGTGGAACGACATCGACGATTCTCCGGTTTGGCAAGACCGCATCTTCTACACCCTCGCCGGCCTTTACGGCGTCGTTTCCGCCATAGCTTTGGTACCTTCCCATCCTATTCTCAATCTTAGGGTTCTTCCCTATGCATTCGCTCGTTATTTTATTTTTTATTTTTTTTTAAATATTTTCCAATTTAGGGTTTTATTTACTTAATTTTTTTTATTATGAATTTTTATTTTAGATTCAACTTGTTAGAATACAATTGAGAGTTCCAGAATATGGTTGGACTACCCAGAAGGTGTTTCATTTTCTCAATTTTGTGGTGAATGCAGGTTTGTATCAATTAAGCTTTTTTTCTTAAATTTATATATTTAAGTTAATTTTTATGTGTTTAGTAATTTTATTAATCAGTATAAATTATTAATTAGTGATATGTAAACTTTTTGGTTTTGCAGTTCGATGTTTAGTTTTCATCTTCTTTCGGAATGTACAGAGGTTACAGCCAGAGGTATTATACATCATTGATTTTAGCATTTCATTTGAAGTATTTACTAGCATTTCTTTGAGTGTACTTTGGTTTTGAACTCCGGGGTGGTTGAAATGGAGGAGGGCCTATGGGGTTTTATGTGATATAAAAGTACCGCATAAGCTTAAGGAAATTTTTATCGTAGAACCTTAAGATGGGCGATGCTGTATGAGATAGAGTGTTGGGCAGTAAAGAACTAACATGAGAATAAAATAAGCAAAGCCGAGATTAGAATGTTGCGTTGGATGTGTGGTAAGTCCAGTGTTGTCAAATAGCGGCTATAGCGATGCGAAATTTGAACAAACCGCTAATGTTTTGTGATATGCTATATAGTACAATGTGTTGTCAAATGGCGGTTATAGCGTTGCTGTAGCACTGTTACATAGCGGAATTTGAACAAACCGCTATTTTCCGTGATCCGTGGTTGACAACATTGGGTAAGACTAGACATGATATAATTAGACATGGGGACATTAGAGGGAAAGTTGGGGTACCACCTTTTGTAGAAAATATGGTAGAAACATAGCTTGGGCATGCAAAGAGAAGACCTATAGATTTTGTGGTAAGGAGAGTATATCAAATTAAGGGTAGTCAAATCACTAAAGGCAGATGAATACTTAGAAAAACTATAAGAGAGACTATTAAGAAAGATCTCAAGATTAATGAGTTGGATAGAGATATGATATATGATGAAATATTATGGCAACGATTGATCCATGTAGCCAGCTCCACTTAGTATGATAAGGCTTGGTTGTTGTTGTATATGATTTTTATTAGGATTTACTTCATATACATCAATGTAAAAAAAATTATACCGTTAATCAATTGTAATCATCAATTCGTTAAAAACATTGACTTTAATCACAATTGCTTCTAAATTCACACATATGATTAGTTGACATTGTATTAAAATTAAACACATTTTTATTCTTATTTGTAAAGAACAGGGTTTAATATGGTCACATATCATTCACAATTTCACACTACTTGTGTTTATGTATGTAGATTGTCCAACATATCTTACTTGATGTGCCAAGTCTTGCTTTCTTTACAACATATGCACTTCTGGTCTTGTTCTGGGCTGAGATTTATTACCAGGTAAGTTTGGTATTGGAGTATTTACTCTATCGTCTGTTTTCTTCTTTTGTCTTGGTGTGTTTTGTAGTTTGGTTTTGATGGGATGATGATTGCCTCTGTGCTAAATGTTTTTGCAGGCACGTGCTGTATCCACTGATGGACTGAAGCCAAGTTTCTATACAATTAATGTTGTGGTTTATGCTGTTCAGGTGAAAATTCTTGTCTATGTTTTGTTGTTGTTTTACCTTTTTAAGATCATGGATGTTGCACACAGCTCGATTCATTTTTGGTTAGTTATGTTGAAAATACAATTGACATAAGTATTACTACAATCAAACTTCTGGACAATATAATTTGATGGAGTTAAGCATGTCTAGTAATATGTTCGGTACAATAGTGATAAGAAGAGCCTTAAGCTATTGTAATATAATCAAATGTCAAGTGAAAATTTTGGAGCGTTTATAAAATTTGGATGCAGCAGCATTTATTTGGCGACTGGATTGATATGGAATAGTTTGGCACTAGGCTCGAAAGTCAAGGTGTTTCCATGAATCAATGATTACGGATAATATTATTTCACATGGCACCATTCTCATTTTACTGAATTGTGGGGGACATTTGGCTTAACAATAATTAAAACCTTGCTGAGGATTCTAACATTTCATACTTTAAGAATCTAGAAAACATTTCATATTTACCAACTGCATTTATCCATTTGAGGATTCTAACATTACATGTTTTAAAAATTTGTAAAATATGGAAATACCTTTAAACTCTTCATGTCCATATTACAGTCATTATTTTTTGTCCCAAGGAAAAAGTGATTTTCTAAACAAAGATCTTACACTGGTCACTGTTGTCAAGTAGAGGCCAAGTGCACTGCGGTGGATTTTTTTTTGACAACTGCTATGGCCTGTGTATGAAGGCTGGTGGCACAATGGCGGAAATGGCCTGTTTTTGGCCTTCCACCATGGTCAGCCATCCACAACCATAACATCTTTTCCATCGAAAGCATATTAATCTACCTTTAAATAACGCAATGACAGCAGTTTCATGCTTTTATCCTTTTATTATTTTTTATTTCAACATAGTAATGATCGGATCCTAGTGAAAGTAAAACTGCTGCTTTAAGTGCAAAACTGGATGGCGATGTGAAATTTCTACATCCCCCCCTTTTTTATAAAAACAAAATCAGAGCATATTTTGCTTGTGATGTTTGATAGAAGCCTTTTGATTAAATTCTAGCACTTAAAACTACCTGATGATTGCATATTGCCACTAGTTAAATTTGGCTAGATATCCAATACTGTTCATTGCAAGATCATGATCGTAGAGACAAAGGAATAGCGTGTAGTATTTATATGTTACAAGCCTTTTCTAACAAAGCTAGGTTCAAAATTTAGATCTCTTACCTTTGCTCATTATTAAGCGCCTGTGTCCTGTATGTTGTCACTTTATCTTTGGTGACATCATAGCTTTATTGATACACCTCCTTCCATTTAACAAGTTACTCCCACGCTTATAGCTTCATCATTATCTTCTCTATGCTCTATTTTTGTAGATCTTCGAGAGCTTTGCGTAACTCTCTCCAGCTGTATCTTGCAGTTTGGTCAATATATAAGCAAAATTCAATGAATACAGACCCTACATAAAAGTTAAATGTTCCAGTCACCTCTAGCATCTATTACAAAAATAATATGACAATATAATCCTTGCCACACAACTTGTACGTAATTCCCAAACTAAACACGTGAAACTTAAGTTGTACTTAGATAAAAGTTCTAAACGGGTCTCTCCAAGTGACTCGCATTCCAGCTCAAGATCAATATACTGTTTTCAAACTATGGTACTGTCTACAGGCAGGTTTTGTGAACCTATAGACACTGTGTGTGACCACTTTCTAAGGCTCCACCACCTTGAATTTTAAGGTGGTGTACAGTATATTAGACTGCAACAGTTTTGACTGTACTCTTCATACAGTCATGTTTTCTGTTGAAAGTTACTTAGAAACATCTGGGAAGGCAGTGCATAGCAGCAGTGACGGAAAACAAAAACAAAACATAAATCAGAGAAGTTTAATCCTAAGAGAGGGAGTAGGATATGTGGACGGTTTCCACAAATTAATAGGCTTAGTGACTTAGAAACTAACCGTCGCCCCCTTTCACGTGCTTATAACTAAATTTTATAGCTTTATTTAATTCTAATATTTGTTTTCAAGAAACCAGGTCGCAGACCTGATCTGTGAACAGCTGTTATGCGCAGACGCAAACAGAATCGGACGGTGCACACAGTTCTCCTGGTTCTACGGTTTCTGTGTGGCCCCAGCTTCCCACCAAATTACGATTTTTTGCATGCACGGCGAGACCTAGCCTGTTCACAGAATCGCACGATTCTATGCACTGACTCGCGATTTTAACTACCGTGATCTTGACTGTACTCTTCGTAAAGTCACTGTTTTTGTTGACAGTTACTGCCAGTTAATTAGAAAATCAGGATCTGTTGTTTGTTAAGGGTCTGTTAACAGTTCAGGTGTGATTTATTAAAGATATCAAATCTGCGCGGCTCCTATCGTTATCAGTTATGTCCTCAAGACTCAAACTTATCTCTAACTGTTGATCCGTAATATTCAATAAGTCCATCTTTTGTCTATCATAACTACTAACCAACACATGATGTCTGTATAAAAAAAGAATCTTGTGTGCCATTGGTTCTGATTTCAATATTTATTTTAAGTGTTAAATGACTGTTACTTTTTTGTTCATGAGTTTTGAGTTTGTTGAATGACCAATCTTTTTTTTGTTTTTATTTGTCTATGTATGTCAGATCATTTTGTGGTTGATATTATGGTGGAAACCAGTCAGCGTACTAGTCATTCTGTCTAAGGTGTTCTTTGCAGGTTTGTCTGTTTGAAATTTTGTCTGTCCTTTACTTCTTTCAATTTATCAAGACTTTTACGGGTTTTTGCTAAGTAATATGGTATACATGTTGCAACAGCGGTTTCTTTGTTTGCTGCCCTTGGCTTTCTTCTCTACGGTGGAAGGTATTTTAATTTCTTTTTTTTTTTTTTTGTTGGATTTTCAACTCCCCTTGATGTAATTTGGAATGAAACTTATTGCATCTAGGTTACAAGATACCAATCACATATTAGGCTCATGCAATTCCTTGGAAGTTTATTTGTTAGGGCCTTAGGGGCACATTTCTGTTAGAGTACTGGTATTGGTGTCTATTTGTTTGTTTTATGAGTCCTCGAATGTTTTTCTCATGGTTTCTTAAAGGGCTGATTGTCAGACATGCAGCAAGATTGAAGTGCTTTATATTTTTGAGCTTTTGTGACTTGCTATTTCATTTTATTTTTTTAACTGTAACTTATCCTTCTTTTTCTATTATCTTCTCTTGTTATTTCTTTTTTATCAAAAATTGAAAAATTTAAGGACGATAGACTAAATCAAGTAACTACTGTTCATTTAAGTTAAATGTTGAATTTTATTTGTGTACGCAAATATTATATACCCACTTTTGTAGTATCACTGATTTCCCTATCTGGTTTTGTGTAGACTATTCTTGATGCTGCAACGCTTTCCTGTTGAATCCAAAGGGCGTCGTAAGAAGCTGCAAGAGGTATGCAATCTGACAGGCTGAGTATAGTATTACTAAAACAAGCCCAATCCCACTAATATAATAGAACTACTAACTATAACTATCTGCAGTCCAAATAATCGGTACACATTGCATCCTAACAACTCATAATTTTAATTTCCTAAATTACCCTCATCTGACATGTTTATATTCAATTTAGTCTTATTTGTATTTGCGTTTATCTTTTCACAATCCTATTAATCTTAATTACTCTTATTTTTTACTCCAAAATTATTCTCTCCTCAGTCCTCAAAATCCAAATACAATGCAAAAATCCACAGCTTGTAGTATACAAATATATATCATCTATTTCCTTTTTTTGAATTCTTAAGTTAGCATGACCCAATATATATTAACATCATTAAATCACCTTAATTTCAAAACGAAATAGGAAATACAAAAAATAACTTGTTAAAGTTTGAATGTTGATCAATAATGTAACTAGAAAAAAAAGAGGTTATTTTAGAAATATGAATAAATGCACCAGAATAATAGACACCTGATATTGTGGATCGTTGATAGAAAAATATTGACATAAAAGACAATCGTAATAACTGCCACCATAGCAGGGTCTAGAGAAGGGTTAAACCTCCTGTGGTACGGTTGTATTCAGCCTTACCTTCTATTAGCAAGAGGTCGATTCTACAACTCAAACTTGTGATCTTCTAGTTTCACAGTCGGAATTCCAACCATTAAGTGAACTGTGAAGGCTCTCTTTCCAAATATTAATATATCTCTAATAAAGTAATTATTTGGGTAAGAGTTCTTTGGAAAATGATAATTAAGAGCTATTAGTGGGGTGTTGGAATAGGTAATTGAGTGGATCAACAACCTCACCCCCTATAAGGAAACTGGTGAAATCACACATACACTAGGGATTTAGCCTAATTAGTCCTTCCAAGGGTTGAGAATTTCTGCCCCCCTGAGCTAGCTTTTGAGATTGAGTTGGATCATGCAGATTCTTAGATGGTATCAGAGCTTATCTTTTTGGACCACTCATTTGTACACTCTAAATGTCGTGTTTTTGGTATATTAGCGGGTGCGTTAAGATCTTTGTAATTGAGGCACCCGCATTTCTACATACTCCAGTGACAGTAATGTAAATTTCCGCTTCTAAGCAGCCGTGATCTAGGCTATATATCTCATCACACAACAGAATAGCGGCAAGACAAGATATATAGAAGGCAGTGCTATTTTCTTCCCATGTTTAGGTTATAGGAATTATCTAGAGATAAAGGAGAGAGAGAGTGGAAAGGAAAATGAGAGAATGGTCACTTCAAATAATGGAATTTTATACTGATATTTTGTAGATAATATAAAGAAATTGTAAATATAACTAACAATAAGTGATGTTTCTTTTCAGGTTGGCTATGTGACAACAATATGTTTTCTATGTTTCCTTATCAGAAGTGTTATGGTGAGCCCCTTCTATTTTTAAATCAAAATTGATTCCTATTGGTTGGTTTTTAAATTGAGTCTGATTGTATTTTGTTGTGTCAGATGTGCTTTAATGCATTTGATAAAAACGCGAACCTTAATGTGATGGACCATCCTATTCTAAACTTCATATATTACCTG

Protein sequence

>MS.gene061658.t1

MTNNTSPSSVTGAVVNAVAAIELTDSSTWWNDIDDSPVWQDRIFYTLAGLYGVVSAIALIQLVRIQLRVPEYGWTTQKVFHFLNFVVNAVRCLVFIFFRNVQRLQPEIVQHILLDVPSLAFFTTYALLVLFWAEIYYQARAVSTDGLKPSFYTINVVVYAVQIILWLILWWKPVSVLVILSKVFFAAVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFLCFLIRSVMMCFNAFDKNANLNVMDHPILNFIYYL