Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06194.t1 | XP_003630614.1 | 97.5 | 285 | 7 | 0 | 1 | 285 | 1 | 285 | 8.40E-150 | 539.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06194.t1 | Q9CAF5 | 71.9 | 249 | 70 | 0 | 34 | 282 | 89 | 337 | 3.3e-102 | 372.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06194.t1 | G7LIW2 | 97.5 | 285 | 7 | 0 | 1 | 285 | 1 | 285 | 6.1e-150 | 539.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene06194 | 0.800426 | 1.45E-48 | -1.69E-46 |
| MS.gene049285 | MS.gene06194 | 0.832669 | 8.28E-56 | -1.69E-46 |
| MS.gene049320 | MS.gene06194 | 0.819628 | 1.05E-52 | -1.69E-46 |
| MS.gene050163 | MS.gene06194 | 0.836044 | 1.18E-56 | -1.69E-46 |
| MS.gene050165 | MS.gene06194 | 0.864484 | 1.18E-64 | -1.69E-46 |
| MS.gene050333 | MS.gene06194 | 0.875894 | 2.15E-68 | -1.69E-46 |
| MS.gene050504 | MS.gene06194 | 0.815222 | 1.03E-51 | -1.69E-46 |
| MS.gene050518 | MS.gene06194 | 0.830711 | 2.52E-55 | -1.69E-46 |
| MS.gene050612 | MS.gene06194 | 0.846977 | 1.55E-59 | -1.69E-46 |
| MS.gene050675 | MS.gene06194 | 0.808098 | 3.66E-50 | -1.69E-46 |
| MS.gene050876 | MS.gene06194 | 0.873073 | 1.95E-67 | -1.69E-46 |
| MS.gene05087 | MS.gene06194 | 0.816042 | 6.78E-52 | -1.69E-46 |
| MS.gene050904 | MS.gene06194 | 0.833045 | 6.68E-56 | -1.69E-46 |
| MS.gene05100 | MS.gene06194 | 0.811831 | 5.75E-51 | -1.69E-46 |
| MS.gene051810 | MS.gene06194 | 0.827414 | 1.59E-54 | -1.69E-46 |
| MS.gene051949 | MS.gene06194 | 0.85961 | 3.67E-63 | -1.69E-46 |
| MS.gene054642 | MS.gene06194 | 0.810515 | 1.11E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene06194 | 0.819165 | 1.34E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene06194 | 0.811581 | 6.52E-51 | -1.69E-46 |
| MS.gene055634 | MS.gene06194 | 0.858338 | 8.83E-63 | -1.69E-46 |
| MS.gene055638 | MS.gene06194 | 0.820521 | 6.56E-53 | -1.69E-46 |
| MS.gene055748 | MS.gene06194 | 0.833608 | 4.84E-56 | -1.69E-46 |
| MS.gene055750 | MS.gene06194 | 0.818915 | 1.53E-52 | -1.69E-46 |
| MS.gene055751 | MS.gene06194 | 0.855508 | 6.02E-62 | -1.69E-46 |
| MS.gene055776 | MS.gene06194 | 0.822807 | 1.94E-53 | -1.69E-46 |
| MS.gene055849 | MS.gene06194 | 0.835689 | 1.45E-56 | -1.69E-46 |
| MS.gene056449 | MS.gene06194 | 0.813154 | 2.95E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene06194 | 0.828015 | 1.14E-54 | -1.69E-46 |
| MS.gene056692 | MS.gene06194 | 0.821448 | 4.02E-53 | -1.69E-46 |
| MS.gene057148 | MS.gene06194 | 0.804244 | 2.37E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene06194 | 0.811347 | 7.33E-51 | -1.69E-46 |
| MS.gene058719 | MS.gene06194 | 0.806367 | 8.51E-50 | -1.69E-46 |
| MS.gene058723 | MS.gene06194 | 0.832226 | 1.07E-55 | -1.69E-46 |
| MS.gene058773 | MS.gene06194 | 0.841206 | 5.47E-58 | -1.69E-46 |
| MS.gene059022 | MS.gene06194 | 0.826575 | 2.52E-54 | -1.69E-46 |
| MS.gene059029 | MS.gene06194 | 0.820753 | 5.81E-53 | -1.69E-46 |
| MS.gene059079 | MS.gene06194 | 0.858023 | 1.10E-62 | -1.69E-46 |
| MS.gene059677 | MS.gene06194 | 0.850612 | 1.52E-60 | -1.69E-46 |
| MS.gene059718 | MS.gene06194 | 0.805997 | 1.02E-49 | -1.69E-46 |
| MS.gene060703 | MS.gene06194 | 0.829181 | 5.94E-55 | -1.69E-46 |
| MS.gene060762 | MS.gene06194 | 0.830354 | 3.08E-55 | -1.69E-46 |
| MS.gene06105 | MS.gene06194 | 0.838728 | 2.42E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06194 | MS.gene057128 | PPI |
| MS.gene06194 | MS.gene06683 | PPI |
| MS.gene06194 | MS.gene06894 | PPI |
| MS.gene06194 | MS.gene013566 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06194.t1 | MTR_8g101390 | 97.544 | 285 | 7 | 0 | 1 | 285 | 1 | 285 | 0.0 | 564 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06194.t1 | AT3G10670 | 71.888 | 249 | 70 | 0 | 34 | 282 | 89 | 337 | 2.76e-133 | 381 |
| MS.gene06194.t1 | AT5G06530 | 29.817 | 218 | 132 | 6 | 27 | 230 | 147 | 357 | 6.66e-12 | 66.2 |
| MS.gene06194.t1 | AT5G06530 | 29.358 | 218 | 133 | 6 | 27 | 230 | 147 | 357 | 6.79e-12 | 66.2 |
| MS.gene06194.t1 | AT5G06530 | 29.358 | 218 | 133 | 6 | 27 | 230 | 147 | 357 | 6.79e-12 | 66.2 |
Find 71 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCATTAGATTCAACGATTT+TGG | 0.142242 | 4.2:-3526213 | None:intergenic |
| GATCTTGCAGCTTGCAGTTT+TGG | 0.164666 | 4.2:+3527277 | MS.gene06194:CDS |
| CAATCACCTGTTGCAATTCC+TGG | 0.224835 | 4.2:+3526446 | MS.gene06194:CDS |
| CCTTCAAGGGCTCTTTCTTC+AGG | 0.248911 | 4.2:-3526407 | None:intergenic |
| AGGGGAAAATTTGCTTGAAA+TGG | 0.308468 | 4.2:+3526382 | MS.gene06194:CDS |
| AAATGATCAATTTCTTGTTA+TGG | 0.315799 | 4.2:+3526475 | MS.gene06194:CDS |
| ACCTCAAGGGGTCCAAGTTC+AGG | 0.361866 | 4.2:-3526530 | None:intergenic |
| TTGCGGCGAGTGTGTGATTT+GGG | 0.362619 | 4.2:-3526128 | None:intergenic |
| ATTAACGCCGCGGAGAATTT+CGG | 0.363663 | 4.2:-3526234 | None:intergenic |
| CCGCAAATTCGCCTGCTTTG+CGG | 0.385979 | 4.2:+3526145 | MS.gene06194:CDS |
| GGAGAAGAACGGAATTGAAA+TGG | 0.406711 | 4.2:-3526107 | None:intergenic |
| TTTGCGGCGAGTGTGTGATT+TGG | 0.406874 | 4.2:-3526129 | None:intergenic |
| GATTGGATGTTGATGCGCTC+AGG | 0.409831 | 4.2:+3527336 | MS.gene06194:CDS |
| CCACTAGTAACTTCATAATC+TGG | 0.412502 | 4.2:-3526344 | None:intergenic |
| CTCGAAGATCGTTGACTTGG+AGG | 0.414656 | 4.2:-3526190 | None:intergenic |
| CACTTTCGCTAAGGTTCTTG+TGG | 0.418543 | 4.2:+3526316 | MS.gene06194:CDS |
| CCGCAAAGCAGGCGAATTTG+CGG | 0.425082 | 4.2:-3526145 | None:intergenic |
| AAACTTGGTCTTCCTGAACT+TGG | 0.426220 | 4.2:+3526518 | MS.gene06194:CDS |
| GGTGCTCGCCGCCGCAAAGC+AGG | 0.429445 | 4.2:-3526156 | None:intergenic |
| ACCCTCCCATGTCCATGTTA+TGG | 0.431294 | 4.2:+3527448 | MS.gene06194:CDS |
| ACATTTCTATTGAGAAAGTC+AGG | 0.433555 | 4.2:-3527215 | None:intergenic |
| AGGCGAAATTCACGCTATCA+TGG | 0.454010 | 4.2:+3526271 | MS.gene06194:CDS |
| AACTCATGAAAAGACCTTCA+AGG | 0.456874 | 4.2:-3526421 | None:intergenic |
| AATGTCAACGAAGGGTTTAG+TGG | 0.459977 | 4.2:+3527233 | MS.gene06194:CDS |
| ACTTTCGCTAAGGTTCTTGT+GGG | 0.463802 | 4.2:+3526317 | MS.gene06194:CDS |
| AAGGACAGGCGACCTATCTA+TGG | 0.465705 | 4.2:+3529016 | MS.gene06194:CDS |
| GAAACACCAGGAATTGCAAC+AGG | 0.465860 | 4.2:-3526452 | None:intergenic |
| ATCATCAACAGAGAATTCTC+TGG | 0.472195 | 4.2:-3527392 | None:intergenic |
| GGATGAAATTGATTCGGGAT+TGG | 0.478013 | 4.2:+3527319 | MS.gene06194:CDS |
| CCTGAAGAAAGAGCCCTTGA+AGG | 0.481223 | 4.2:+3526407 | MS.gene06194:CDS |
| TGAGGCAGATGGATATGAAC+TGG | 0.490578 | 4.2:+3529049 | MS.gene06194:CDS |
| TTGTTATGGCTTATAATGCT+CGG | 0.498223 | 4.2:+3526489 | MS.gene06194:CDS |
| TCCTGAACTTGGACCCCTTG+AGG | 0.506534 | 4.2:+3526529 | MS.gene06194:CDS |
| TGGCTCGAAGATCGTTGACT+TGG | 0.513953 | 4.2:-3526193 | None:intergenic |
| CAAATTCGCCTGCTTTGCGG+CGG | 0.518445 | 4.2:+3526148 | MS.gene06194:CDS |
| TGTTGATGCGCTCAGGGATG+TGG | 0.524984 | 4.2:+3527343 | MS.gene06194:CDS |
| TGGTAAAAGCACTTTCGCTA+AGG | 0.531262 | 4.2:+3526307 | MS.gene06194:CDS |
| CTCAATAGAAATGTCAACGA+AGG | 0.535504 | 4.2:+3527224 | MS.gene06194:CDS |
| TCATCAACAGAGAATTCTCT+GGG | 0.539796 | 4.2:-3527391 | None:intergenic |
| CAATTGCATCTACCATAGAT+AGG | 0.540712 | 4.2:-3529028 | None:intergenic |
| AACGGAAGAATTGCAAGGAC+AGG | 0.551372 | 4.2:+3529002 | MS.gene06194:CDS |
| ACTCATGAAAAGACCTTCAA+GGG | 0.552552 | 4.2:-3526420 | None:intergenic |
| ATCTATGGTAGATGCAATTG+AGG | 0.552780 | 4.2:+3529031 | MS.gene06194:CDS |
| GACTTGGAGGAGGGGAACCT+CGG | 0.553003 | 4.2:-3526177 | None:intergenic |
| AAATGAATAATGAACCTCAA+GGG | 0.553158 | 4.2:-3526543 | None:intergenic |
| TCAATAGAAATGTCAACGAA+GGG | 0.553262 | 4.2:+3527225 | MS.gene06194:CDS |
| TGTTGATGATTACTCACTAT+CGG | 0.557313 | 4.2:+3527405 | MS.gene06194:CDS |
| GAAGATCGTTGACTTGGAGG+AGG | 0.561738 | 4.2:-3526187 | None:intergenic |
| GGCGAAATTCACGCTATCAT+GGG | 0.562057 | 4.2:+3526272 | MS.gene06194:CDS |
| AATTGATCATTTGAAACACC+AGG | 0.564779 | 4.2:-3526464 | None:intergenic |
| GTAGATGCAATTGAGGCAGA+TGG | 0.567240 | 4.2:+3529038 | MS.gene06194:CDS |
| AACTTACCATAACATGGACA+TGG | 0.572749 | 4.2:-3527454 | None:intergenic |
| AAGATCGTTGACTTGGAGGA+GGG | 0.579227 | 4.2:-3526186 | None:intergenic |
| ATTGGATGTTGATGCGCTCA+GGG | 0.588735 | 4.2:+3527337 | MS.gene06194:CDS |
| ACCATAACATGGACATGGGA+GGG | 0.592038 | 4.2:-3527449 | None:intergenic |
| CTTTGCGGCGGCGAGCACCG+AGG | 0.592980 | 4.2:+3526160 | MS.gene06194:CDS |
| AATGCTCGGAGAAAGAAACT+TGG | 0.594310 | 4.2:+3526503 | MS.gene06194:CDS |
| AGATCGTTGACTTGGAGGAG+GGG | 0.602773 | 4.2:-3526185 | None:intergenic |
| AATGAATAATGAACCTCAAG+GGG | 0.611116 | 4.2:-3526542 | None:intergenic |
| CCAGATTATGAAGTTACTAG+TGG | 0.621960 | 4.2:+3526344 | MS.gene06194:CDS |
| TACCATAACATGGACATGGG+AGG | 0.624925 | 4.2:-3527450 | None:intergenic |
| CTTCTAAACTATCAGGACAA+CGG | 0.631876 | 4.2:+3528984 | MS.gene06194:intron |
| ACTTACCATAACATGGACAT+GGG | 0.633255 | 4.2:-3527453 | None:intergenic |
| GCTCAGGGATGTGGCAAGTG+CGG | 0.643242 | 4.2:+3527352 | MS.gene06194:CDS |
| GTCAACGAAGGGTTTAGTGG+AGG | 0.664376 | 4.2:+3527236 | MS.gene06194:CDS |
| AGGACAACGGAAGAATTGCA+AGG | 0.667405 | 4.2:+3528997 | MS.gene06194:intron |
| TGTGTGATTTGGGAGAAGAA+CGG | 0.680750 | 4.2:-3526118 | None:intergenic |
| GTTAATCTCACTATCAACAG+AGG | 0.703089 | 4.2:+3526251 | MS.gene06194:CDS |
| TGATAGTGAGATTAACGCCG+CGG | 0.730942 | 4.2:-3526244 | None:intergenic |
| CATCAACAGAGAATTCTCTG+GGG | 0.787412 | 4.2:-3527390 | None:intergenic |
| TCTAATGCCGAAATTCTCCG+CGG | 0.794861 | 4.2:+3526227 | MS.gene06194:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTCTTTTTTTTTTTAAAA+CGG | + | chr4.2:3526864-3526883 | MS.gene06194:intron | 10.0% |
| !!! | TATTTTATTTTTTATGGTAA+TGG | - | chr4.2:3527945-3527964 | None:intergenic | 10.0% |
| !! | CAAAAGAAAATTAGTAAAAA+AGG | - | chr4.2:3527810-3527829 | None:intergenic | 15.0% |
| !! | AAATGATCAATTTCTTGTTA+TGG | + | chr4.2:3526475-3526494 | MS.gene06194:CDS | 20.0% |
| !! | AACTATTTAGATAGATTTAG+AGG | + | chr4.2:3528112-3528131 | MS.gene06194:intron | 20.0% |
| !! | CTAAATCTATCTAAATAGTT+AGG | - | chr4.2:3528112-3528131 | None:intergenic | 20.0% |
| !! | TACATTATATGCTCATTTAT+TGG | + | chr4.2:3528644-3528663 | MS.gene06194:intron | 20.0% |
| !! | TGATAGTTTAGAAGAAAAAA+AGG | - | chr4.2:3528978-3528997 | None:intergenic | 20.0% |
| !!! | AATGTTTTGTTTAATGGTTT+AGG | + | chr4.2:3528444-3528463 | MS.gene06194:intron | 20.0% |
| !!! | ACCTTTTTAAATGAAATCAA+TGG | - | chr4.2:3528845-3528864 | None:intergenic | 20.0% |
| !!! | ATTTCATTTAAAAAGGTACA+TGG | + | chr4.2:3528848-3528867 | MS.gene06194:intron | 20.0% |
| !!! | GACTTATTTTAGCTTATTTA+TGG | + | chr4.2:3526729-3526748 | MS.gene06194:intron | 20.0% |
| !!! | TATTTTGGATGAAATTGATT+CGG | + | chr4.2:3527313-3527332 | MS.gene06194:CDS | 20.0% |
| !!! | TTTTTTTCTTCTAAACTATC+AGG | + | chr4.2:3528977-3528996 | MS.gene06194:intron | 20.0% |
| ! | AAATGAATAATGAACCTCAA+GGG | - | chr4.2:3526546-3526565 | None:intergenic | 25.0% |
| ! | AACTAAAATTGCAAGTTAGT+GGG | - | chr4.2:3528817-3528836 | None:intergenic | 25.0% |
| ! | AAGTCAGAAACCATAAAAAA+GGG | - | chr4.2:3527124-3527143 | None:intergenic | 25.0% |
| ! | AATGATTCTCCAAAATATCA+AGG | - | chr4.2:3526689-3526708 | None:intergenic | 25.0% |
| ! | ACGTTAAAATAAAATGTGAG+AGG | - | chr4.2:3528721-3528740 | None:intergenic | 25.0% |
| ! | ATGTATATACTTGCATCTTA+TGG | + | chr4.2:3527761-3527780 | MS.gene06194:intron | 25.0% |
| ! | TAAATGAATAATGAACCTCA+AGG | - | chr4.2:3526547-3526566 | None:intergenic | 25.0% |
| ! | TATGATAGTCTAATAGTTAG+AGG | + | chr4.2:3528065-3528084 | MS.gene06194:intron | 25.0% |
| ! | TGTATATACTTGCATCTTAT+GGG | + | chr4.2:3527762-3527781 | MS.gene06194:intron | 25.0% |
| ! | TTGAAATTGATGAATGCTTT+GGG | + | chr4.2:3527899-3527918 | MS.gene06194:intron | 25.0% |
| !! | ATTCTAAGTTTTCAACTTGA+AGG | + | chr4.2:3527504-3527523 | MS.gene06194:intron | 25.0% |
| !! | TTCTAAGTTTTCAACTTGAA+GGG | + | chr4.2:3527505-3527524 | MS.gene06194:intron | 25.0% |
| !! | TTTGAAATTGATGAATGCTT+TGG | + | chr4.2:3527898-3527917 | MS.gene06194:intron | 25.0% |
| !! | TTTTCATACACTGTCTATAA+CGG | - | chr4.2:3528915-3528934 | None:intergenic | 25.0% |
| !! | TTTTCTTAGAAAATGGATGT+AGG | + | chr4.2:3528686-3528705 | MS.gene06194:intron | 25.0% |
| !!! | AGATTGCTTTTCTTAGAAAA+TGG | + | chr4.2:3528679-3528698 | MS.gene06194:intron | 25.0% |
| !!! | ATTTTGGATGAAATTGATTC+GGG | + | chr4.2:3527314-3527333 | MS.gene06194:CDS | 25.0% |
| !!! | GCAGTGTTTTTCTTATTTAA+TGG | + | chr4.2:3527166-3527185 | MS.gene06194:intron | 25.0% |
| !!! | GCCATTGATTTCATTTAAAA+AGG | + | chr4.2:3528841-3528860 | MS.gene06194:intron | 25.0% |
| !!! | GTTCTGAATGTTTTGTTTAA+TGG | + | chr4.2:3528438-3528457 | MS.gene06194:intron | 25.0% |
| !!! | GTTTTTAACTTACCATAACA+TGG | - | chr4.2:3527463-3527482 | None:intergenic | 25.0% |
| AAAAGCAATCTTCTACCAAA+TGG | - | chr4.2:3528670-3528689 | None:intergenic | 30.0% | |
| AAAATAAGTCGATCCAATCA+AGG | - | chr4.2:3526719-3526738 | None:intergenic | 30.0% | |
| AAGCTATCTTGGATAACTTA+GGG | - | chr4.2:3526835-3526854 | None:intergenic | 30.0% | |
| AAGTGTGTGTTATGTAATAC+AGG | - | chr4.2:3528396-3528415 | None:intergenic | 30.0% | |
| AATGAATAATGAACCTCAAG+GGG | - | chr4.2:3526545-3526564 | None:intergenic | 30.0% | |
| ACATTTCTATTGAGAAAGTC+AGG | - | chr4.2:3527218-3527237 | None:intergenic | 30.0% | |
| AGAAAAGACCTACTTTCTTT+AGG | - | chr4.2:3528245-3528264 | None:intergenic | 30.0% | |
| AGAAAATGGATGTAGGTATT+AGG | + | chr4.2:3528693-3528712 | MS.gene06194:intron | 30.0% | |
| ATCATTGTTAAAGCCTTGAT+TGG | + | chr4.2:3526703-3526722 | MS.gene06194:intron | 30.0% | |
| CAAGTCAGAAACCATAAAAA+AGG | - | chr4.2:3527125-3527144 | None:intergenic | 30.0% | |
| CCAAAATATCAAGGATTATG+AGG | - | chr4.2:3526680-3526699 | None:intergenic | 30.0% | |
| CCAATACTATGAATTAACCA+CGG | - | chr4.2:3528369-3528388 | None:intergenic | 30.0% | |
| CTATTGTCTTCTCAACTATA+GGG | - | chr4.2:3527979-3527998 | None:intergenic | 30.0% | |
| CTTGATATTGTGGTAAAATG+TGG | + | chr4.2:3526585-3526604 | MS.gene06194:intron | 30.0% | |
| GAACTAAAATTGCAAGTTAG+TGG | - | chr4.2:3528818-3528837 | None:intergenic | 30.0% | |
| GCTATAACATTATCCTTTGA+GGG | - | chr4.2:3528289-3528308 | None:intergenic | 30.0% | |
| GTAGCTAGCAGAAAATATAT+GGG | - | chr4.2:3528497-3528516 | None:intergenic | 30.0% | |
| TAAGCTATCTTGGATAACTT+AGG | - | chr4.2:3526836-3526855 | None:intergenic | 30.0% | |
| TAATAGTTAGAGGTAGATCA+AGG | + | chr4.2:3528075-3528094 | MS.gene06194:intron | 30.0% | |
| TATCTAAATAGTTAGGCCAA+TGG | - | chr4.2:3528105-3528124 | None:intergenic | 30.0% | |
| TATTGTCTTCTCAACTATAG+GGG | - | chr4.2:3527978-3527997 | None:intergenic | 30.0% | |
| TCAATAGAAATGTCAACGAA+GGG | + | chr4.2:3527225-3527244 | MS.gene06194:CDS | 30.0% | |
| TCTATTGTCTTCTCAACTAT+AGG | - | chr4.2:3527980-3527999 | None:intergenic | 30.0% | |
| TGAGATGTATTCACATAATG+TGG | - | chr4.2:3528746-3528765 | None:intergenic | 30.0% | |
| TGCTATAACATTATCCTTTG+AGG | - | chr4.2:3528290-3528309 | None:intergenic | 30.0% | |
| TTCCATTTCCTAAAGAAAGT+AGG | + | chr4.2:3528234-3528253 | MS.gene06194:intron | 30.0% | |
| TTGTTATGGCTTATAATGCT+CGG | + | chr4.2:3526489-3526508 | MS.gene06194:CDS | 30.0% | |
| TTTAAATGAAATCAATGGCG+TGG | - | chr4.2:3528840-3528859 | None:intergenic | 30.0% | |
| TTTAAGAATAAAGGCAGCTT+TGG | + | chr4.2:3528537-3528556 | MS.gene06194:intron | 30.0% | |
| TTTCATACACTGTCTATAAC+GGG | - | chr4.2:3528914-3528933 | None:intergenic | 30.0% | |
| TTTGCGACTTAATTGGATTT+GGG | + | chr4.2:3527073-3527092 | MS.gene06194:intron | 30.0% | |
| ! | AATTGATCATTTGAAACACC+AGG | - | chr4.2:3526467-3526486 | None:intergenic | 30.0% |
| ! | AATTTTATCACGACATCACT+TGG | - | chr4.2:3527880-3527899 | None:intergenic | 30.0% |
| ! | ATGAAGATTTTACAGCTTGT+TGG | + | chr4.2:3527727-3527746 | MS.gene06194:intron | 30.0% |
| ! | ATGATTTTCAATTTACTCCG+TGG | + | chr4.2:3528349-3528368 | MS.gene06194:intron | 30.0% |
| ! | CACATTTTACCACAATATCA+AGG | - | chr4.2:3526587-3526606 | None:intergenic | 30.0% |
| ! | CCTCATAATCCTTGATATTT+TGG | + | chr4.2:3526677-3526696 | MS.gene06194:intron | 30.0% |
| ! | TAAACAACGTATAGCTTGTA+TGG | + | chr4.2:3526895-3526914 | MS.gene06194:intron | 30.0% |
| ! | TTTTGCGACTTAATTGGATT+TGG | + | chr4.2:3527072-3527091 | MS.gene06194:intron | 30.0% |
| !! | TGTTGATGATTACTCACTAT+CGG | + | chr4.2:3527405-3527424 | MS.gene06194:CDS | 30.0% |
| !!! | CCTTAAGTTTTGAGGAAAAT+GGG | + | chr4.2:3527584-3527603 | MS.gene06194:intron | 30.0% |
| !!! | CTTAAGTTTTGAGGAAAATG+GGG | + | chr4.2:3527585-3527604 | MS.gene06194:intron | 30.0% |
| !!! | GTTGTTTTGATAAGCTATCT+TGG | - | chr4.2:3526846-3526865 | None:intergenic | 30.0% |
| !!! | TCCTTAAGTTTTGAGGAAAA+TGG | + | chr4.2:3527583-3527602 | MS.gene06194:intron | 30.0% |
| AACTCATGAAAAGACCTTCA+AGG | - | chr4.2:3526424-3526443 | None:intergenic | 35.0% | |
| AACTTACCATAACATGGACA+TGG | - | chr4.2:3527457-3527476 | None:intergenic | 35.0% | |
| ACAAATGGAAAGTAGCTGAA+GGG | - | chr4.2:3527637-3527656 | None:intergenic | 35.0% | |
| ACAATAGAACACCGTTGTTT+AGG | + | chr4.2:3527992-3528011 | MS.gene06194:intron | 35.0% | |
| ACTCATGAAAAGACCTTCAA+GGG | - | chr4.2:3526423-3526442 | None:intergenic | 35.0% | |
| ACTTACCATAACATGGACAT+GGG | - | chr4.2:3527456-3527475 | None:intergenic | 35.0% | |
| ATAAAGGCCAGACATATACT+AGG | - | chr4.2:3528157-3528176 | None:intergenic | 35.0% | |
| ATCATCAACAGAGAATTCTC+TGG | - | chr4.2:3527395-3527414 | None:intergenic | 35.0% | |
| ATCTATGGTAGATGCAATTG+AGG | + | chr4.2:3529031-3529050 | MS.gene06194:CDS | 35.0% | |
| ATGCTCATTTATTGGCCATT+TGG | + | chr4.2:3528652-3528671 | MS.gene06194:intron | 35.0% | |
| ATTAAGCTGGTTATCCAGAT+AGG | + | chr4.2:3526991-3527010 | MS.gene06194:intron | 35.0% | |
| CAATTGCATCTACCATAGAT+AGG | - | chr4.2:3529031-3529050 | None:intergenic | 35.0% | |
| CCAATTAAGTCGCAAAATCA+AGG | - | chr4.2:3527069-3527088 | None:intergenic | 35.0% | |
| CCACTAGTAACTTCATAATC+TGG | - | chr4.2:3526347-3526366 | None:intergenic | 35.0% | |
| CCAGATTATGAAGTTACTAG+TGG | + | chr4.2:3526344-3526363 | MS.gene06194:CDS | 35.0% | |
| CCGTGGTTAATTCATAGTAT+TGG | + | chr4.2:3528366-3528385 | MS.gene06194:intron | 35.0% | |
| CGTAGCTAGCAGAAAATATA+TGG | - | chr4.2:3528498-3528517 | None:intergenic | 35.0% | |
| CGTTGTTATCCTTGATATTG+TGG | + | chr4.2:3526575-3526594 | MS.gene06194:intron | 35.0% | |
| CTCAATAGAAATGTCAACGA+AGG | + | chr4.2:3527224-3527243 | MS.gene06194:CDS | 35.0% | |
| CTTCTAAACTATCAGGACAA+CGG | + | chr4.2:3528984-3529003 | MS.gene06194:intron | 35.0% | |
| GCATAAGTACTTGATTAAGC+TGG | + | chr4.2:3526978-3526997 | MS.gene06194:intron | 35.0% | |
| GTATACAGACGATCTAATTC+AGG | - | chr4.2:3528627-3528646 | None:intergenic | 35.0% | |
| GTCTATCTCAAATCATGCTA+TGG | - | chr4.2:3528789-3528808 | None:intergenic | 35.0% | |
| GTTAATCTCACTATCAACAG+AGG | + | chr4.2:3526251-3526270 | MS.gene06194:CDS | 35.0% | |
| TATACTTGCATCTTATGGGA+AGG | + | chr4.2:3527766-3527785 | MS.gene06194:intron | 35.0% | |
| TCATCAACAGAGAATTCTCT+GGG | - | chr4.2:3527394-3527413 | None:intergenic | 35.0% | |
| TCCATTTGTGTGAATGTACT+CGG | + | chr4.2:3527648-3527667 | MS.gene06194:intron | 35.0% | |
| TCTCATAGATGCCTAAACAA+CGG | - | chr4.2:3528006-3528025 | None:intergenic | 35.0% | |
| TTAAGCTGGTTATCCAGATA+GGG | + | chr4.2:3526992-3527011 | MS.gene06194:intron | 35.0% | |
| TTATGGACGTAAACATCTGT+GGG | + | chr4.2:3526746-3526765 | MS.gene06194:intron | 35.0% | |
| TTCATACACTGTCTATAACG+GGG | - | chr4.2:3528913-3528932 | None:intergenic | 35.0% | |
| TTTATGGACGTAAACATCTG+TGG | + | chr4.2:3526745-3526764 | MS.gene06194:intron | 35.0% | |
| TTTCCTCAAAACTTAAGGAG+AGG | - | chr4.2:3527582-3527601 | None:intergenic | 35.0% | |
| ! | AAACATCTGTGGGATTGTTT+TGG | + | chr4.2:3526756-3526775 | MS.gene06194:intron | 35.0% |
| ! | AGGGGAAAATTTGCTTGAAA+TGG | + | chr4.2:3526382-3526401 | MS.gene06194:CDS | 35.0% |
| ! | CCCATTTTCCTCAAAACTTA+AGG | - | chr4.2:3527587-3527606 | None:intergenic | 35.0% |
| ! | CCTTGATTTTGCGACTTAAT+TGG | + | chr4.2:3527066-3527085 | MS.gene06194:intron | 35.0% |
| ! | GACCTACTTTCTTTAGGAAA+TGG | - | chr4.2:3528239-3528258 | None:intergenic | 35.0% |
| ! | GGCATTAGATTCAACGATTT+TGG | - | chr4.2:3526216-3526235 | None:intergenic | 35.0% |
| ! | TAGTATATGTCTGGCCTTTA+TGG | + | chr4.2:3528156-3528175 | MS.gene06194:intron | 35.0% |
| ! | TTTCCTCTCCTTAAGTTTTG+AGG | + | chr4.2:3527576-3527595 | MS.gene06194:intron | 35.0% |
| !! | AATGTACTCGGTTTTAGCAA+AGG | + | chr4.2:3527660-3527679 | MS.gene06194:intron | 35.0% |
| !! | TAATGGTTTAGGTGCTGATT+TGG | + | chr4.2:3528455-3528474 | MS.gene06194:intron | 35.0% |
| !!! | AGTGGTAGTGTTGTTTTCAA+AGG | + | chr4.2:3526362-3526381 | MS.gene06194:CDS | 35.0% |
| !!! | GTGGTAGTGTTGTTTTCAAA+GGG | + | chr4.2:3526363-3526382 | MS.gene06194:CDS | 35.0% |
| !!! | TGGTAGTGTTGTTTTCAAAG+GGG | + | chr4.2:3526364-3526383 | MS.gene06194:CDS | 35.0% |
| AATGCTCGGAGAAAGAAACT+TGG | + | chr4.2:3526503-3526522 | MS.gene06194:CDS | 40.0% | |
| AATGTCAACGAAGGGTTTAG+TGG | + | chr4.2:3527233-3527252 | MS.gene06194:CDS | 40.0% | |
| ACCGAGTACATTCACACAAA+TGG | - | chr4.2:3527652-3527671 | None:intergenic | 40.0% | |
| ACTTCAGCTGATAATCCTCT+AGG | - | chr4.2:3528210-3528229 | None:intergenic | 40.0% | |
| ACTTTCGCTAAGGTTCTTGT+GGG | + | chr4.2:3526317-3526336 | MS.gene06194:CDS | 40.0% | |
| ATCATGGGAAAAAACGGTTC+TGG | + | chr4.2:3526287-3526306 | MS.gene06194:CDS | 40.0% | |
| ATCTGATCTTCTCTCCCTAT+CGG | - | chr4.2:3528044-3528063 | None:intergenic | 40.0% | |
| CACAAATGGAAAGTAGCTGA+AGG | - | chr4.2:3527638-3527657 | None:intergenic | 40.0% | |
| CACGCTATCATGGGAAAAAA+CGG | + | chr4.2:3526281-3526300 | MS.gene06194:CDS | 40.0% | |
| CATCAACAGAGAATTCTCTG+GGG | - | chr4.2:3527393-3527412 | None:intergenic | 40.0% | |
| CTCTGATCCTAGTATATGTC+TGG | + | chr4.2:3528147-3528166 | MS.gene06194:intron | 40.0% | |
| GGAGAAGAACGGAATTGAAA+TGG | - | chr4.2:3526110-3526129 | None:intergenic | 40.0% | |
| GGTAGATCAAGGAAAACCAT+TGG | + | chr4.2:3528086-3528105 | MS.gene06194:intron | 40.0% | |
| GTGGGTTCATCTACATTGAA+GGG | - | chr4.2:3528188-3528207 | None:intergenic | 40.0% | |
| GTTGTTTAGGCATCTATGAG+AGG | + | chr4.2:3528005-3528024 | MS.gene06194:intron | 40.0% | |
| TAAAAAAGGGCTACACACAG+TGG | - | chr4.2:3527111-3527130 | None:intergenic | 40.0% | |
| TCAGTCTCAGACTTTAAGTG+AGG | + | chr4.2:3527534-3527553 | MS.gene06194:intron | 40.0% | |
| ! | AAACTTGGTCTTCCTGAACT+TGG | + | chr4.2:3526518-3526537 | MS.gene06194:CDS | 40.0% |
| ! | AACATTATCCTTTGAGGGAC+TGG | - | chr4.2:3528284-3528303 | None:intergenic | 40.0% |
| ! | ACATTATCCTTTGAGGGACT+GGG | - | chr4.2:3528283-3528302 | None:intergenic | 40.0% |
| ! | ATCTTGCAGCTTGCAGTTTT+GGG | + | chr4.2:3527278-3527297 | MS.gene06194:CDS | 40.0% |
| ! | GGGTTCAGGTGCTTAATTTT+AGG | + | chr4.2:3527605-3527624 | MS.gene06194:intron | 40.0% |
| ! | TGTGTGATTTGGGAGAAGAA+CGG | - | chr4.2:3526121-3526140 | None:intergenic | 40.0% |
| !! | CTGATTTGGCAACTTTAGCA+GGG | + | chr4.2:3528469-3528488 | MS.gene06194:intron | 40.0% |
| !! | GGATGAAATTGATTCGGGAT+TGG | + | chr4.2:3527319-3527338 | MS.gene06194:CDS | 40.0% |
| !! | TGGTAAAAGCACTTTCGCTA+AGG | + | chr4.2:3526307-3526326 | MS.gene06194:CDS | 40.0% |
| !! | TTTTGAGGAAAATGGGGTTC+AGG | + | chr4.2:3527591-3527610 | MS.gene06194:intron | 40.0% |
| !!! | CTGTGTGTAGCCCTTTTTTA+TGG | + | chr4.2:3527111-3527130 | MS.gene06194:intron | 40.0% |
| !!! | GGATTGTTTTGGAGAGCTTT+TGG | + | chr4.2:3526767-3526786 | MS.gene06194:intron | 40.0% |
| AACGGAAGAATTGCAAGGAC+AGG | + | chr4.2:3529002-3529021 | MS.gene06194:CDS | 45.0% | |
| AACTGCATTTAGGCCCTATC+TGG | - | chr4.2:3527008-3527027 | None:intergenic | 45.0% | |
| ACCATAACATGGACATGGGA+GGG | - | chr4.2:3527452-3527471 | None:intergenic | 45.0% | |
| AGGACAACGGAAGAATTGCA+AGG | + | chr4.2:3528997-3529016 | MS.gene06194:intron | 45.0% | |
| AGGCGAAATTCACGCTATCA+TGG | + | chr4.2:3526271-3526290 | MS.gene06194:CDS | 45.0% | |
| ATGTAGATGAACCCACCTAG+AGG | + | chr4.2:3528192-3528211 | MS.gene06194:intron | 45.0% | |
| ATTAACGCCGCGGAGAATTT+CGG | - | chr4.2:3526237-3526256 | None:intergenic | 45.0% | |
| ATTGGATGTTGATGCGCTCA+GGG | + | chr4.2:3527337-3527356 | MS.gene06194:CDS | 45.0% | |
| CAATCACCTGTTGCAATTCC+TGG | + | chr4.2:3526446-3526465 | MS.gene06194:CDS | 45.0% | |
| CACGACATCACTTGGTACAA+TGG | - | chr4.2:3527872-3527891 | None:intergenic | 45.0% | |
| CACTTTCGCTAAGGTTCTTG+TGG | + | chr4.2:3526316-3526335 | MS.gene06194:CDS | 45.0% | |
| CAGCTGATAATCCTCTAGGT+GGG | - | chr4.2:3528206-3528225 | None:intergenic | 45.0% | |
| GAAACACCAGGAATTGCAAC+AGG | - | chr4.2:3526455-3526474 | None:intergenic | 45.0% | |
| GGCGAAATTCACGCTATCAT+GGG | + | chr4.2:3526272-3526291 | MS.gene06194:CDS | 45.0% | |
| GTAGATGCAATTGAGGCAGA+TGG | + | chr4.2:3529038-3529057 | MS.gene06194:CDS | 45.0% | |
| GTTCATCTACATTGAAGGGC+CGG | - | chr4.2:3528184-3528203 | None:intergenic | 45.0% | |
| TACCATAACATGGACATGGG+AGG | - | chr4.2:3527453-3527472 | None:intergenic | 45.0% | |
| TCAGCTGATAATCCTCTAGG+TGG | - | chr4.2:3528207-3528226 | None:intergenic | 45.0% | |
| TCTAATGCCGAAATTCTCCG+CGG | + | chr4.2:3526227-3526246 | MS.gene06194:CDS | 45.0% | |
| TGAGGCAGATGGATATGAAC+TGG | + | chr4.2:3529049-3529068 | MS.gene06194:CDS | 45.0% | |
| TGCATGCCTGACTGCAATTA+AGG | - | chr4.2:3527038-3527057 | None:intergenic | 45.0% | |
| TTAGTTTCCCAGTCCCTCAA+AGG | + | chr4.2:3528273-3528292 | MS.gene06194:intron | 45.0% | |
| ! | GATCTTGCAGCTTGCAGTTT+TGG | + | chr4.2:3527277-3527296 | MS.gene06194:CDS | 45.0% |
| ! | GGTGGGTTCATCTACATTGA+AGG | - | chr4.2:3528189-3528208 | None:intergenic | 45.0% |
| ! | TCTTGCAGCTTGCAGTTTTG+GGG | + | chr4.2:3527279-3527298 | MS.gene06194:CDS | 45.0% |
| ! | TGATAGTGAGATTAACGCCG+CGG | - | chr4.2:3526247-3526266 | None:intergenic | 45.0% |
| !! | AAGATCGTTGACTTGGAGGA+GGG | - | chr4.2:3526189-3526208 | None:intergenic | 45.0% |
| !! | GCTGATTTGGCAACTTTAGC+AGG | + | chr4.2:3528468-3528487 | MS.gene06194:intron | 45.0% |
| !!! | TCATTTTATTTTATTTTTTA+TGG | - | chr4.2:3527951-3527970 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTAAGAATAA+AGG | + | chr4.2:3528528-3528547 | MS.gene06194:intron | 5.0% |
| AAGGACAGGCGACCTATCTA+TGG | + | chr4.2:3529016-3529035 | MS.gene06194:CDS | 50.0% | |
| AAGGGCTACACACAGTGGTT+TGG | - | chr4.2:3527106-3527125 | None:intergenic | 50.0% | |
| ACCCTCCCATGTCCATGTTA+TGG | + | chr4.2:3527448-3527467 | MS.gene06194:CDS | 50.0% | |
| AGGCCGCATCAACTGCATTT+AGG | - | chr4.2:3527018-3527037 | None:intergenic | 50.0% | |
| ATGCGGCCTTAATTGCAGTC+AGG | + | chr4.2:3527029-3527048 | MS.gene06194:intron | 50.0% | |
| CCTGAAGAAAGAGCCCTTGA+AGG | + | chr4.2:3526407-3526426 | MS.gene06194:CDS | 50.0% | |
| CCTTCAAGGGCTCTTTCTTC+AGG | - | chr4.2:3526410-3526429 | None:intergenic | 50.0% | |
| GATTGGATGTTGATGCGCTC+AGG | + | chr4.2:3527336-3527355 | MS.gene06194:CDS | 50.0% | |
| GGCATCTATGAGAGGACATG+TGG | + | chr4.2:3528013-3528032 | MS.gene06194:intron | 50.0% | |
| GTCAACGAAGGGTTTAGTGG+AGG | + | chr4.2:3527236-3527255 | MS.gene06194:CDS | 50.0% | |
| TTGCGGCGAGTGTGTGATTT+GGG | - | chr4.2:3526131-3526150 | None:intergenic | 50.0% | |
| TTTGCGGCGAGTGTGTGATT+TGG | - | chr4.2:3526132-3526151 | None:intergenic | 50.0% | |
| ! | ATGTCTGGCCTTTATGGCAC+CGG | + | chr4.2:3528162-3528181 | MS.gene06194:intron | 50.0% |
| ! | CACTGTCTATAACGGGGATC+AGG | - | chr4.2:3528907-3528926 | None:intergenic | 50.0% |
| ! | GGGCCTAAATGCAGTTGATG+CGG | + | chr4.2:3527012-3527031 | MS.gene06194:intron | 50.0% |
| ! | GGGGGCAGATTTGGCTATTT+TGG | + | chr4.2:3527298-3527317 | MS.gene06194:CDS | 50.0% |
| ! | TGGCTCGAAGATCGTTGACT+TGG | - | chr4.2:3526196-3526215 | None:intergenic | 50.0% |
| !! | AGATCGTTGACTTGGAGGAG+GGG | - | chr4.2:3526188-3526207 | None:intergenic | 50.0% |
| !! | CTCGAAGATCGTTGACTTGG+AGG | - | chr4.2:3526193-3526212 | None:intergenic | 50.0% |
| !! | CTTGCAGCTTGCAGTTTTGG+GGG | + | chr4.2:3527280-3527299 | MS.gene06194:CDS | 50.0% |
| !! | GAAGATCGTTGACTTGGAGG+AGG | - | chr4.2:3526190-3526209 | None:intergenic | 50.0% |
| !! | GACATGTGGAAGCACCGATA+GGG | + | chr4.2:3528027-3528046 | MS.gene06194:intron | 50.0% |
| !!! | TGCAGTTTTGGGGGCAGATT+TGG | + | chr4.2:3527289-3527308 | MS.gene06194:CDS | 50.0% |
| ACCTCAAGGGGTCCAAGTTC+AGG | - | chr4.2:3526533-3526552 | None:intergenic | 55.0% | |
| CAAATTCGCCTGCTTTGCGG+CGG | + | chr4.2:3526148-3526167 | MS.gene06194:CDS | 55.0% | |
| CCGCAAAGCAGGCGAATTTG+CGG | - | chr4.2:3526148-3526167 | None:intergenic | 55.0% | |
| CCGCAAATTCGCCTGCTTTG+CGG | + | chr4.2:3526145-3526164 | MS.gene06194:CDS | 55.0% | |
| TCCTGAACTTGGACCCCTTG+AGG | + | chr4.2:3526529-3526548 | MS.gene06194:CDS | 55.0% | |
| TGTTGATGCGCTCAGGGATG+TGG | + | chr4.2:3527343-3527362 | MS.gene06194:CDS | 55.0% | |
| !! | GGACATGTGGAAGCACCGAT+AGG | + | chr4.2:3528026-3528045 | MS.gene06194:intron | 55.0% |
| !! | TTGAAGGGCCGGTGCCATAA+AGG | - | chr4.2:3528173-3528192 | None:intergenic | 55.0% |
| GACTTGGAGGAGGGGAACCT+CGG | - | chr4.2:3526180-3526199 | None:intergenic | 60.0% | |
| GCTCAGGGATGTGGCAAGTG+CGG | + | chr4.2:3527352-3527371 | MS.gene06194:CDS | 60.0% | |
| GGTGCTCGCCGCCGCAAAGC+AGG | - | chr4.2:3526159-3526178 | None:intergenic | 75.0% | |
| ! | CTTTGCGGCGGCGAGCACCG+AGG | + | chr4.2:3526160-3526179 | MS.gene06194:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 3526083 | 3529088 | 3526083 | ID=MS.gene06194 |
| chr4.2 | mRNA | 3526083 | 3529088 | 3526083 | ID=MS.gene06194.t1;Parent=MS.gene06194 |
| chr4.2 | exon | 3526083 | 3526550 | 3526083 | ID=MS.gene06194.t1.exon1;Parent=MS.gene06194.t1 |
| chr4.2 | CDS | 3526083 | 3526550 | 3526083 | ID=cds.MS.gene06194.t1;Parent=MS.gene06194.t1 |
| chr4.2 | exon | 3527170 | 3527469 | 3527170 | ID=MS.gene06194.t1.exon2;Parent=MS.gene06194.t1 |
| chr4.2 | CDS | 3527170 | 3527469 | 3527170 | ID=cds.MS.gene06194.t1;Parent=MS.gene06194.t1 |
| chr4.2 | exon | 3528999 | 3529088 | 3528999 | ID=MS.gene06194.t1.exon3;Parent=MS.gene06194.t1 |
| chr4.2 | CDS | 3528999 | 3529088 | 3528999 | ID=cds.MS.gene06194.t1;Parent=MS.gene06194.t1 |
| Gene Sequence |
| Protein sequence |
