Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064481.t1 | XP_003590454.2 | 94.3 | 528 | 30 | 0 | 1 | 528 | 34 | 561 | 6.10E-271 | 943 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064481.t1 | Q9LD95 | 49.1 | 532 | 251 | 6 | 1 | 528 | 32 | 547 | 4.5e-121 | 436.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064481.t1 | G7IA88 | 94.3 | 528 | 30 | 0 | 1 | 528 | 34 | 561 | 4.4e-271 | 943.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene064481 | 0.801649 | 8.15E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene064481 | 0.848697 | 5.20E-60 | -1.69E-46 |
| MS.gene049491 | MS.gene064481 | 0.812397 | 4.33E-51 | -1.69E-46 |
| MS.gene049614 | MS.gene064481 | 0.835952 | 1.24E-56 | -1.69E-46 |
| MS.gene050076 | MS.gene064481 | 0.848144 | 7.39E-60 | -1.69E-46 |
| MS.gene050301 | MS.gene064481 | 0.800866 | 1.18E-48 | -1.69E-46 |
| MS.gene050432 | MS.gene064481 | 0.843708 | 1.19E-58 | -1.69E-46 |
| MS.gene050767 | MS.gene064481 | 0.866134 | 3.56E-65 | -1.69E-46 |
| MS.gene050770 | MS.gene064481 | 0.869894 | 2.20E-66 | -1.69E-46 |
| MS.gene050812 | MS.gene064481 | 0.817014 | 4.11E-52 | -1.69E-46 |
| MS.gene05101 | MS.gene064481 | 0.830149 | 3.46E-55 | -1.69E-46 |
| MS.gene051228 | MS.gene064481 | 0.826955 | 2.04E-54 | -1.69E-46 |
| MS.gene051471 | MS.gene064481 | 0.865012 | 8.04E-65 | -1.69E-46 |
| MS.gene052078 | MS.gene064481 | 0.832201 | 1.08E-55 | -1.69E-46 |
| MS.gene052271 | MS.gene064481 | 0.817211 | 3.71E-52 | -1.69E-46 |
| MS.gene052290 | MS.gene064481 | 0.863069 | 3.24E-64 | -1.69E-46 |
| MS.gene052310 | MS.gene064481 | 0.847698 | 9.81E-60 | -1.69E-46 |
| MS.gene052326 | MS.gene064481 | 0.868018 | 8.92E-66 | -1.69E-46 |
| MS.gene052379 | MS.gene064481 | 0.843583 | 1.28E-58 | -1.69E-46 |
| MS.gene053103 | MS.gene064481 | 0.802327 | 5.91E-49 | -1.69E-46 |
| MS.gene053104 | MS.gene064481 | 0.815131 | 1.08E-51 | -1.69E-46 |
| MS.gene053107 | MS.gene064481 | 0.803802 | 2.93E-49 | -1.69E-46 |
| MS.gene053322 | MS.gene064481 | 0.858427 | 8.30E-63 | -1.69E-46 |
| MS.gene053384 | MS.gene064481 | 0.824208 | 9.14E-54 | -1.69E-46 |
| MS.gene054123 | MS.gene064481 | 0.825609 | 4.27E-54 | -1.69E-46 |
| MS.gene054376 | MS.gene064481 | 0.860531 | 1.94E-63 | -1.69E-46 |
| MS.gene054543 | MS.gene064481 | 0.800346 | 1.50E-48 | -1.69E-46 |
| MS.gene05455 | MS.gene064481 | 0.82608 | 3.30E-54 | -1.69E-46 |
| MS.gene054802 | MS.gene064481 | 0.873051 | 1.98E-67 | -1.69E-46 |
| MS.gene054803 | MS.gene064481 | 0.87437 | 7.12E-68 | -1.69E-46 |
| MS.gene054804 | MS.gene064481 | 0.874925 | 4.61E-68 | -1.69E-46 |
| MS.gene054955 | MS.gene064481 | 0.817431 | 3.31E-52 | -1.69E-46 |
| MS.gene055254 | MS.gene064481 | 0.838462 | 2.83E-57 | -1.69E-46 |
| MS.gene055277 | MS.gene064481 | 0.839485 | 1.54E-57 | -1.69E-46 |
| MS.gene055390 | MS.gene064481 | 0.835387 | 1.73E-56 | -1.69E-46 |
| MS.gene055397 | MS.gene064481 | 0.89634 | 4.05E-76 | -1.69E-46 |
| MS.gene055422 | MS.gene064481 | 0.80295 | 4.40E-49 | -1.69E-46 |
| MS.gene055499 | MS.gene064481 | 0.837312 | 5.60E-57 | -1.69E-46 |
| MS.gene055896 | MS.gene064481 | 0.939385 | 1.39E-99 | -1.69E-46 |
| MS.gene05592 | MS.gene064481 | 0.810751 | 9.86E-51 | -1.69E-46 |
| MS.gene055930 | MS.gene064481 | 0.803827 | 2.90E-49 | -1.69E-46 |
| MS.gene056410 | MS.gene064481 | 0.800829 | 1.20E-48 | -1.69E-46 |
| MS.gene056609 | MS.gene064481 | 0.851438 | 8.87E-61 | -1.69E-46 |
| MS.gene056612 | MS.gene064481 | 0.811431 | 7.02E-51 | -1.69E-46 |
| MS.gene057011 | MS.gene064481 | 0.828328 | 9.56E-55 | -1.69E-46 |
| MS.gene057123 | MS.gene064481 | 0.829571 | 4.78E-55 | -1.69E-46 |
| MS.gene057129 | MS.gene064481 | 0.855866 | 4.73E-62 | -1.69E-46 |
| MS.gene057146 | MS.gene064481 | 0.821091 | 4.85E-53 | -1.69E-46 |
| MS.gene057246 | MS.gene064481 | 0.806264 | 8.95E-50 | -1.69E-46 |
| MS.gene057295 | MS.gene064481 | 0.806641 | 7.45E-50 | -1.69E-46 |
| MS.gene05735 | MS.gene064481 | 0.805799 | 1.12E-49 | -1.69E-46 |
| MS.gene057927 | MS.gene064481 | 0.814202 | 1.74E-51 | -1.69E-46 |
| MS.gene058293 | MS.gene064481 | 0.848828 | 4.78E-60 | -1.69E-46 |
| MS.gene058660 | MS.gene064481 | 0.873511 | 1.39E-67 | -1.69E-46 |
| MS.gene059326 | MS.gene064481 | 0.835507 | 1.61E-56 | -1.69E-46 |
| MS.gene05934 | MS.gene064481 | 0.808652 | 2.79E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene064481 | 0.82083 | 5.57E-53 | -1.69E-46 |
| MS.gene059597 | MS.gene064481 | 0.832302 | 1.02E-55 | -1.69E-46 |
| MS.gene05959 | MS.gene064481 | 0.803999 | 2.67E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene064481 | 0.834832 | 2.39E-56 | -1.69E-46 |
| MS.gene059688 | MS.gene064481 | 0.804355 | 2.25E-49 | -1.69E-46 |
| MS.gene059692 | MS.gene064481 | 0.807591 | 4.69E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene064481 | 0.80815 | 3.57E-50 | -1.69E-46 |
| MS.gene059708 | MS.gene064481 | 0.846363 | 2.28E-59 | -1.69E-46 |
| MS.gene059894 | MS.gene064481 | 0.819349 | 1.22E-52 | -1.69E-46 |
| MS.gene059960 | MS.gene064481 | 0.899523 | 1.82E-77 | -1.69E-46 |
| MS.gene060005 | MS.gene064481 | 0.806461 | 8.13E-50 | -1.69E-46 |
| MS.gene060193 | MS.gene064481 | 0.816884 | 4.39E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene064481 | 0.850616 | 1.51E-60 | -1.69E-46 |
| MS.gene060818 | MS.gene064481 | 0.833319 | 5.71E-56 | -1.69E-46 |
| MS.gene06090 | MS.gene064481 | 0.803004 | 4.29E-49 | -1.69E-46 |
| MS.gene061041 | MS.gene064481 | 0.82729 | 1.70E-54 | -1.69E-46 |
| MS.gene061051 | MS.gene064481 | -0.821618 | 3.67E-53 | -1.69E-46 |
| MS.gene061200 | MS.gene064481 | 0.872037 | 4.32E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064481.t1 | MTR_1g063850 | 95.833 | 528 | 22 | 0 | 1 | 528 | 34 | 561 | 0.0 | 1035 |
| MS.gene064481.t1 | MTR_7g101840 | 54.579 | 546 | 215 | 7 | 4 | 528 | 24 | 557 | 0.0 | 572 |
| MS.gene064481.t1 | MTR_3g118290 | 35.457 | 361 | 228 | 1 | 163 | 523 | 214 | 569 | 9.72e-70 | 234 |
| MS.gene064481.t1 | MTR_3g033420 | 33.439 | 314 | 203 | 3 | 212 | 524 | 94 | 402 | 3.36e-46 | 167 |
| MS.gene064481.t1 | MTR_1g007370 | 29.630 | 324 | 214 | 3 | 211 | 526 | 232 | 549 | 6.29e-44 | 164 |
| MS.gene064481.t1 | MTR_0172s0030 | 31.677 | 322 | 205 | 7 | 200 | 512 | 174 | 489 | 6.73e-35 | 137 |
| MS.gene064481.t1 | MTR_3g090900 | 30.241 | 291 | 192 | 4 | 228 | 512 | 216 | 501 | 1.77e-29 | 122 |
| MS.gene064481.t1 | MTR_1g007370 | 28.221 | 163 | 110 | 1 | 211 | 366 | 232 | 394 | 8.96e-22 | 97.8 |
| MS.gene064481.t1 | MTR_3g090900 | 28.283 | 198 | 138 | 2 | 228 | 422 | 216 | 412 | 3.48e-18 | 87.8 |
| MS.gene064481.t1 | MTR_3g033150 | 30.263 | 152 | 106 | 0 | 373 | 524 | 2 | 153 | 6.29e-16 | 75.5 |
| MS.gene064481.t1 | MTR_3g090900 | 31.818 | 132 | 87 | 1 | 228 | 356 | 216 | 347 | 4.60e-15 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064481.t1 | AT2G36990 | 50.281 | 533 | 243 | 7 | 1 | 528 | 32 | 547 | 4.96e-164 | 477 |
| MS.gene064481.t1 | AT1G08540 | 39.205 | 352 | 205 | 5 | 163 | 512 | 212 | 556 | 8.09e-77 | 253 |
| MS.gene064481.t1 | AT3G53920 | 28.975 | 283 | 200 | 1 | 231 | 512 | 275 | 557 | 3.24e-43 | 162 |
| MS.gene064481.t1 | AT5G13730 | 33.684 | 285 | 186 | 1 | 228 | 512 | 122 | 403 | 1.25e-40 | 152 |
| MS.gene064481.t1 | AT1G64860 | 31.353 | 303 | 194 | 6 | 219 | 512 | 190 | 487 | 1.30e-34 | 137 |
| MS.gene064481.t1 | AT5G24120 | 33.218 | 289 | 186 | 5 | 228 | 512 | 219 | 504 | 1.76e-34 | 136 |
| MS.gene064481.t1 | AT5G24120 | 33.218 | 289 | 186 | 5 | 228 | 512 | 219 | 504 | 1.76e-34 | 136 |
| MS.gene064481.t1 | AT5G24120 | 33.218 | 289 | 186 | 5 | 228 | 512 | 219 | 504 | 1.76e-34 | 136 |
| MS.gene064481.t1 | AT1G64860 | 28.889 | 270 | 179 | 5 | 219 | 479 | 190 | 455 | 2.66e-28 | 118 |
| MS.gene064481.t1 | AT3G53920 | 26.471 | 136 | 100 | 0 | 231 | 366 | 275 | 410 | 1.04e-18 | 89.0 |
Find 110 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATTATCCTTCTTTCTTT+AGG | 0.163412 | 1.4:+52393459 | None:intergenic |
| CCTTCTTGCTAATTCTTCTT+TGG | 0.187020 | 1.4:+52406366 | None:intergenic |
| TCAGAAATCGGGGAAATATT+TGG | 0.212988 | 1.4:-52393396 | MS.gene064481:CDS |
| ACAAGTCTTCAATCTCAATT+TGG | 0.259684 | 1.4:-52407934 | MS.gene064481:CDS |
| GCTGAATGGGCTGAGGGTGC+AGG | 0.288139 | 1.4:-52407895 | MS.gene064481:CDS |
| GCTGACAATTCAATTCCTTT+TGG | 0.290203 | 1.4:-52408454 | MS.gene064481:CDS |
| GAATTATCCTTCTTTCTTTA+GGG | 0.290624 | 1.4:+52393460 | None:intergenic |
| AGTAACCTGTCAACCTTATC+TGG | 0.324085 | 1.4:+52406331 | None:intergenic |
| CAGCATTGAGGACTTATTAC+AGG | 0.330546 | 1.4:-52407752 | MS.gene064481:intron |
| ACAGTGTTCTGCATAGAAAT+TGG | 0.335474 | 1.4:+52406292 | None:intergenic |
| CTTGCTAATTCTTCTTTGGT+TGG | 0.337398 | 1.4:+52406370 | None:intergenic |
| GAGAGATCTTTATCAGAAAT+CGG | 0.345293 | 1.4:-52393408 | MS.gene064481:CDS |
| TTGCTAATTCTTCTTTGGTT+GGG | 0.347443 | 1.4:+52406371 | None:intergenic |
| GACAATGAAACTTATCTTGC+CGG | 0.348504 | 1.4:-52408211 | MS.gene064481:CDS |
| ATTTGGAAGGGAACCGACTA+TGG | 0.349105 | 1.4:-52407917 | MS.gene064481:CDS |
| TGTCCTGGAATGATTATATA+TGG | 0.357270 | 1.4:+52407140 | None:intergenic |
| AGGATAATTCGGCTAAGATT+TGG | 0.366663 | 1.4:-52393447 | MS.gene064481:CDS |
| GTAACAGGAATTATTGAGAT+TGG | 0.367209 | 1.4:-52407968 | MS.gene064481:intron |
| CCTGCATCTCTTGCCTCGTC+TGG | 0.375111 | 1.4:-52408762 | MS.gene064481:CDS |
| TTCCTCACAAACAGGAGAAA+TGG | 0.380976 | 1.4:-52408590 | MS.gene064481:CDS |
| ATCAGGTAGCACGTGACTTC+AGG | 0.385184 | 1.4:-52408790 | MS.gene064481:CDS |
| GGTGGATAAAACAAGCAATA+AGG | 0.390831 | 1.4:-52407167 | MS.gene064481:CDS |
| TGAGACAGATACAACTTTCC+AGG | 0.392181 | 1.4:-52406263 | MS.gene064481:intron |
| AAGTAAAGGTTCAGCCGAAC+TGG | 0.401281 | 1.4:+52408315 | None:intergenic |
| CTGAATGGGCTGAGGGTGCA+GGG | 0.405222 | 1.4:-52407894 | MS.gene064481:CDS |
| TAACAAACTTAGCAAGGTAT+TGG | 0.408770 | 1.4:-52406431 | MS.gene064481:CDS |
| CTAAAGAAAGAAGGATAATT+CGG | 0.411136 | 1.4:-52393458 | MS.gene064481:CDS |
| CTGTAGGCGCAACTTGTTCC+CGG | 0.411671 | 1.4:+52409458 | None:intergenic |
| GTACAAAAGAAGATAAATAA+AGG | 0.414473 | 1.4:-52408160 | MS.gene064481:CDS |
| TGCTACCTGATCAGTGTTGC+TGG | 0.422020 | 1.4:+52408802 | None:intergenic |
| GCAGTTGGTTGTTCAGATAC+AGG | 0.431565 | 1.4:-52408059 | MS.gene064481:intron |
| AGTTCGGCTGAACCTTTACT+TGG | 0.432097 | 1.4:-52408313 | MS.gene064481:CDS |
| AGAGATCTTTATCAGAAATC+GGG | 0.432214 | 1.4:-52393407 | MS.gene064481:CDS |
| CAGTCTAGCCTCTTCCAGTT+CGG | 0.434200 | 1.4:-52408329 | MS.gene064481:CDS |
| AAGCTCAAGAAGTGTCTTGT+TGG | 0.438338 | 1.4:-52393327 | MS.gene064481:CDS |
| GGTAGGAATTTCACCAGATA+AGG | 0.449825 | 1.4:-52406344 | MS.gene064481:CDS |
| TTCTTAGAAATATGCAATAG+AGG | 0.460431 | 1.4:+52409355 | None:intergenic |
| AGATTAACTTCCTCACAAAC+AGG | 0.464965 | 1.4:-52408598 | MS.gene064481:CDS |
| GGAACCGACTATGGCTGAAT+GGG | 0.470550 | 1.4:-52407908 | MS.gene064481:CDS |
| AGGCCATATATAATCATTCC+AGG | 0.471211 | 1.4:-52407143 | MS.gene064481:CDS |
| GGGAACCGACTATGGCTGAA+TGG | 0.475910 | 1.4:-52407909 | MS.gene064481:CDS |
| TAAATACAACGCAGATGGAT+AGG | 0.479182 | 1.4:-52408850 | MS.gene064481:CDS |
| TATTTGGTTTATCTAGAGAA+AGG | 0.480775 | 1.4:-52393380 | MS.gene064481:CDS |
| TAAGAAAGACAAGACATGTC+AGG | 0.481264 | 1.4:-52409338 | MS.gene064481:intron |
| TTGATGCAGGAGGGAAGCAC+AGG | 0.484071 | 1.4:-52407255 | MS.gene064481:intron |
| ACTCTGTAGGAACTTGTTCA+AGG | 0.491792 | 1.4:+52408120 | None:intergenic |
| TGACACCAGCAACACTGATC+AGG | 0.494024 | 1.4:-52408807 | MS.gene064481:CDS |
| CCAGACGAGGCAAGAGATGC+AGG | 0.494650 | 1.4:+52408762 | None:intergenic |
| TCGGCTGAACCTTTACTTGG+AGG | 0.495395 | 1.4:-52408310 | MS.gene064481:CDS |
| AAGAGCAGTGTGATGAGTAT+AGG | 0.500553 | 1.4:-52409378 | MS.gene064481:CDS |
| ATTTGGTTTATCTAGAGAAA+GGG | 0.501595 | 1.4:-52393379 | MS.gene064481:CDS |
| CAAAGAAGAATTAGCAAGAA+GGG | 0.504770 | 1.4:-52406365 | MS.gene064481:CDS |
| TCTTGAGCTTGTAGAGTGCC+CGG | 0.505531 | 1.4:+52393340 | None:intergenic |
| TTGCTAGTTATGCATATTGG+TGG | 0.510435 | 1.4:-52407185 | MS.gene064481:CDS |
| AATATGCATAACTAGCAAAT+CGG | 0.513716 | 1.4:+52407190 | None:intergenic |
| GTCTTCAATCTCAATTTGGA+AGG | 0.513916 | 1.4:-52407930 | MS.gene064481:CDS |
| TTTCACCAGATAAGGTTGAC+AGG | 0.514551 | 1.4:-52406336 | MS.gene064481:CDS |
| GAAGAATTAGCAAGAAGGGT+AGG | 0.515944 | 1.4:-52406361 | MS.gene064481:CDS |
| GATTTGCTAGTTATGCATAT+TGG | 0.516441 | 1.4:-52407188 | MS.gene064481:CDS |
| TCCCTCAAAACAAGCAGCCT+CGG | 0.518683 | 1.4:-52408515 | MS.gene064481:CDS |
| GATTCAAGCAAATTTACGCT+TGG | 0.521413 | 1.4:-52407812 | MS.gene064481:CDS |
| GAAGGTAGAACTAACCCAAA+AGG | 0.521833 | 1.4:+52408439 | None:intergenic |
| CAAACTTAGCAAGGTATTGG+AGG | 0.522948 | 1.4:-52406428 | MS.gene064481:CDS |
| GAGACGAGCAAAAGAGAGAA+AGG | 0.524521 | 1.4:-52408254 | MS.gene064481:CDS |
| AGGTTCAGCCGAACTGGAAG+AGG | 0.525196 | 1.4:+52408321 | None:intergenic |
| TCTTGTAAAAGAACTGAAGT+AGG | 0.526396 | 1.4:+52409397 | None:intergenic |
| TTCCAGGACAATCCGTCTAC+CGG | 0.528158 | 1.4:-52407127 | MS.gene064481:intron |
| GGTCCGTCAGTTAGAGAGCC+GGG | 0.530333 | 1.4:-52393358 | MS.gene064481:CDS |
| TACCGGTAGACGGATTGTCC+TGG | 0.531638 | 1.4:+52407125 | None:intergenic |
| GCTTAACTGTCGGAAAATGA+AGG | 0.532157 | 1.4:-52407872 | MS.gene064481:CDS |
| GGGTCCGTCAGTTAGAGAGC+CGG | 0.535719 | 1.4:-52393359 | MS.gene064481:CDS |
| CCAAAGAAGAATTAGCAAGA+AGG | 0.540683 | 1.4:-52406366 | MS.gene064481:CDS |
| ATTTCTATGCAGAACACTGT+GGG | 0.541514 | 1.4:-52406289 | MS.gene064481:CDS |
| AAATACAACGCAGATGGATA+GGG | 0.548297 | 1.4:-52408849 | MS.gene064481:CDS |
| TTGGAGGCAACAAAACTGTA+AGG | 0.550271 | 1.4:-52408294 | MS.gene064481:CDS |
| GACTATGGCTGAATGGGCTG+AGG | 0.550713 | 1.4:-52407902 | MS.gene064481:CDS |
| CAATGCTGAGACCACGCCCT+TGG | 0.557076 | 1.4:+52407767 | None:intergenic |
| TCTTACGCCCTAAAGAAAGA+AGG | 0.558734 | 1.4:-52393467 | MS.gene064481:CDS |
| ATCCATTTCTCCTGTTTGTG+AGG | 0.561909 | 1.4:+52408588 | None:intergenic |
| CTATATAAGCAAGTCTGCAT+AGG | 0.570446 | 1.4:+52393290 | None:intergenic |
| GCTTCGAATCAGAACTCTGT+AGG | 0.570606 | 1.4:+52408107 | None:intergenic |
| CAACTAAACTTACCGGTAGA+CGG | 0.572741 | 1.4:+52407115 | None:intergenic |
| GGTATATAACAAACTTAGCA+AGG | 0.574798 | 1.4:-52406437 | MS.gene064481:CDS |
| CTCTGTAGGAACTTGTTCAA+GGG | 0.576974 | 1.4:+52408121 | None:intergenic |
| AACATTAAATACAACGCAGA+TGG | 0.578908 | 1.4:-52408855 | MS.gene064481:CDS |
| AAGAAGTGTCTTGTTGGTCA+AGG | 0.579678 | 1.4:-52393321 | MS.gene064481:CDS |
| TTGCGCCTACAGTCACAGCC+TGG | 0.580774 | 1.4:-52409447 | MS.gene064481:CDS |
| TCTTCAATCTCAATTTGGAA+GGG | 0.583713 | 1.4:-52407929 | MS.gene064481:CDS |
| TACATTGCTAAAAGTTACCA+AGG | 0.583869 | 1.4:-52407784 | MS.gene064481:CDS |
| TCTTACAAGTTCTCCAGACG+AGG | 0.588352 | 1.4:+52408749 | None:intergenic |
| TTCTGAACAAGAGTCGCAGT+TGG | 0.594000 | 1.4:-52408074 | MS.gene064481:CDS |
| GCTAAAAGTTACCAAGGGCG+TGG | 0.602278 | 1.4:-52407778 | MS.gene064481:CDS |
| AGATGAAAATCTAGTACACC+AGG | 0.605649 | 1.4:+52409429 | None:intergenic |
| ATAACTAGCAAATCGGCACC+CGG | 0.618916 | 1.4:+52407197 | None:intergenic |
| AGGGCGTGGTCTCAGCATTG+AGG | 0.623349 | 1.4:-52407764 | MS.gene064481:CDS |
| AGGGTGCAGGGCTTAACTGT+CGG | 0.624002 | 1.4:-52407882 | MS.gene064481:CDS |
| GATAAAACAAGCAATAAGGA+AGG | 0.626347 | 1.4:-52407163 | MS.gene064481:CDS |
| GTACACCAGGCTGTGACTGT+AGG | 0.636883 | 1.4:+52409442 | None:intergenic |
| GAGATCTTTATCAGAAATCG+GGG | 0.638019 | 1.4:-52393406 | MS.gene064481:CDS |
| TATTAAGTCTTCAGCTACCG+AGG | 0.640013 | 1.4:+52408498 | None:intergenic |
| ATGAAGGCGCAACTTCGTTG+TGG | 0.640554 | 1.4:-52407856 | MS.gene064481:CDS |
| AATTTCTATGCAGAACACTG+TGG | 0.643164 | 1.4:-52406290 | MS.gene064481:CDS |
| TCAGCCCATTCAGCCATAGT+CGG | 0.648437 | 1.4:+52407904 | None:intergenic |
| TCACAAACAGGAGAAATGGA+TGG | 0.652953 | 1.4:-52408586 | MS.gene064481:CDS |
| ACTATGGCTGAATGGGCTGA+GGG | 0.662679 | 1.4:-52407901 | MS.gene064481:CDS |
| AAAAGTTTAAAACTCAAACC+GGG | 0.667831 | 1.4:-52407215 | MS.gene064481:CDS |
| GTGCCCGGCTCTCTAACTGA+CGG | 0.674530 | 1.4:+52393355 | None:intergenic |
| TTTCTATGCAGAACACTGTG+GGG | 0.686425 | 1.4:-52406288 | MS.gene064481:CDS |
| AATATCAATTAAAGCTGACG+AGG | 0.690371 | 1.4:-52408479 | MS.gene064481:CDS |
| ACATTGCTAAAAGTTACCAA+GGG | 0.718877 | 1.4:-52407783 | MS.gene064481:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 52393290 | 52409485 | 52393290 | ID=MS.gene064481 |
| chr1.4 | mRNA | 52393290 | 52409485 | 52393290 | ID=MS.gene064481.t1;Parent=MS.gene064481 |
| chr1.4 | exon | 52409339 | 52409485 | 52409339 | ID=MS.gene064481.t1.exon1;Parent=MS.gene064481.t1 |
| chr1.4 | CDS | 52409339 | 52409485 | 52409339 | ID=cds.MS.gene064481.t1;Parent=MS.gene064481.t1 |
| chr1.4 | exon | 52408755 | 52408879 | 52408755 | ID=MS.gene064481.t1.exon2;Parent=MS.gene064481.t1 |
| chr1.4 | CDS | 52408755 | 52408879 | 52408755 | ID=cds.MS.gene064481.t1;Parent=MS.gene064481.t1 |
| chr1.4 | exon | 52408454 | 52408618 | 52408454 | ID=MS.gene064481.t1.exon3;Parent=MS.gene064481.t1 |
| chr1.4 | CDS | 52408454 | 52408618 | 52408454 | ID=cds.MS.gene064481.t1;Parent=MS.gene064481.t1 |
| chr1.4 | exon | 52408060 | 52408348 | 52408060 | ID=MS.gene064481.t1.exon4;Parent=MS.gene064481.t1 |
| chr1.4 | CDS | 52408060 | 52408348 | 52408060 | ID=cds.MS.gene064481.t1;Parent=MS.gene064481.t1 |
| chr1.4 | exon | 52407753 | 52407983 | 52407753 | ID=MS.gene064481.t1.exon5;Parent=MS.gene064481.t1 |
| chr1.4 | CDS | 52407753 | 52407983 | 52407753 | ID=cds.MS.gene064481.t1;Parent=MS.gene064481.t1 |
| chr1.4 | exon | 52407128 | 52407268 | 52407128 | ID=MS.gene064481.t1.exon6;Parent=MS.gene064481.t1 |
| chr1.4 | CDS | 52407128 | 52407268 | 52407128 | ID=cds.MS.gene064481.t1;Parent=MS.gene064481.t1 |
| chr1.4 | exon | 52406264 | 52406464 | 52406264 | ID=MS.gene064481.t1.exon7;Parent=MS.gene064481.t1 |
| chr1.4 | CDS | 52406264 | 52406464 | 52406264 | ID=cds.MS.gene064481.t1;Parent=MS.gene064481.t1 |
| chr1.4 | exon | 52393290 | 52393577 | 52393290 | ID=MS.gene064481.t1.exon8;Parent=MS.gene064481.t1 |
| chr1.4 | CDS | 52393290 | 52393577 | 52393290 | ID=cds.MS.gene064481.t1;Parent=MS.gene064481.t1 |
| Gene Sequence |
| Protein sequence |
