Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071700.t1 | XP_003601259.1 | 99.1 | 219 | 2 | 0 | 2 | 220 | 558 | 776 | 2.30E-115 | 424.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071700.t1 | Q8L5Y9 | 90.4 | 218 | 21 | 0 | 3 | 220 | 565 | 782 | 2.6e-107 | 389.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071700.t1 | G7J5F4 | 99.1 | 219 | 2 | 0 | 2 | 220 | 558 | 776 | 1.7e-115 | 424.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049264 | MS.gene071700 | 0.826889 | 2.12E-54 | -1.69E-46 |
| MS.gene049378 | MS.gene071700 | 0.854439 | 1.23E-61 | -1.69E-46 |
| MS.gene050226 | MS.gene071700 | 0.81882 | 1.61E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene071700 | 0.813978 | 1.95E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene071700 | 0.821358 | 4.21E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene071700 | 0.84263 | 2.30E-58 | -1.69E-46 |
| MS.gene050762 | MS.gene071700 | 0.826277 | 2.96E-54 | -1.69E-46 |
| MS.gene050763 | MS.gene071700 | 0.825228 | 5.26E-54 | -1.69E-46 |
| MS.gene050826 | MS.gene071700 | 0.832494 | 9.16E-56 | -1.69E-46 |
| MS.gene051210 | MS.gene071700 | 0.808587 | 2.88E-50 | -1.69E-46 |
| MS.gene051800 | MS.gene071700 | 0.815363 | 9.60E-52 | -1.69E-46 |
| MS.gene051935 | MS.gene071700 | 0.805438 | 1.33E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene071700 | 0.801876 | 7.32E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene071700 | 0.810146 | 1.33E-50 | -1.69E-46 |
| MS.gene052389 | MS.gene071700 | 0.831075 | 2.05E-55 | -1.69E-46 |
| MS.gene052674 | MS.gene071700 | 0.803784 | 2.95E-49 | -1.69E-46 |
| MS.gene052675 | MS.gene071700 | 0.803021 | 4.25E-49 | -1.69E-46 |
| MS.gene052677 | MS.gene071700 | 0.813914 | 2.01E-51 | -1.69E-46 |
| MS.gene053147 | MS.gene071700 | 0.839992 | 1.14E-57 | -1.69E-46 |
| MS.gene05415 | MS.gene071700 | 0.805817 | 1.11E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene071700 | -0.806518 | 7.91E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene071700 | 0.834657 | 2.64E-56 | -1.69E-46 |
| MS.gene054467 | MS.gene071700 | 0.846557 | 2.02E-59 | -1.69E-46 |
| MS.gene054468 | MS.gene071700 | 0.86837 | 6.87E-66 | -1.69E-46 |
| MS.gene054581 | MS.gene071700 | 0.83166 | 1.47E-55 | -1.69E-46 |
| MS.gene054826 | MS.gene071700 | 0.875117 | 3.97E-68 | -1.69E-46 |
| MS.gene054930 | MS.gene071700 | 0.831817 | 1.35E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene071700 | 0.833876 | 4.14E-56 | -1.69E-46 |
| MS.gene055926 | MS.gene071700 | 0.816363 | 5.75E-52 | -1.69E-46 |
| MS.gene05595 | MS.gene071700 | 0.826948 | 2.05E-54 | -1.69E-46 |
| MS.gene05604 | MS.gene071700 | 0.810139 | 1.34E-50 | -1.69E-46 |
| MS.gene056480 | MS.gene071700 | 0.826988 | 2.00E-54 | -1.69E-46 |
| MS.gene057026 | MS.gene071700 | 0.809379 | 1.95E-50 | -1.69E-46 |
| MS.gene05761 | MS.gene071700 | 0.833986 | 3.89E-56 | -1.69E-46 |
| MS.gene057869 | MS.gene071700 | 0.805767 | 1.14E-49 | -1.69E-46 |
| MS.gene057929 | MS.gene071700 | 0.820639 | 6.17E-53 | -1.69E-46 |
| MS.gene058651 | MS.gene071700 | 0.806699 | 7.25E-50 | -1.69E-46 |
| MS.gene05872 | MS.gene071700 | 0.851814 | 6.95E-61 | -1.69E-46 |
| MS.gene059161 | MS.gene071700 | 0.814579 | 1.43E-51 | -1.69E-46 |
| MS.gene059439 | MS.gene071700 | 0.803675 | 3.11E-49 | -1.69E-46 |
| MS.gene059440 | MS.gene071700 | 0.81315 | 2.96E-51 | -1.69E-46 |
| MS.gene059952 | MS.gene071700 | 0.802466 | 5.54E-49 | -1.69E-46 |
| MS.gene060122 | MS.gene071700 | -0.801971 | 7.00E-49 | -1.69E-46 |
| MS.gene060167 | MS.gene071700 | 0.800424 | 1.45E-48 | -1.69E-46 |
| MS.gene060322 | MS.gene071700 | 0.805916 | 1.06E-49 | -1.69E-46 |
| MS.gene060373 | MS.gene071700 | 0.832889 | 7.30E-56 | -1.69E-46 |
| MS.gene06052 | MS.gene071700 | 0.860293 | 2.28E-63 | -1.69E-46 |
| MS.gene060683 | MS.gene071700 | 0.811293 | 7.53E-51 | -1.69E-46 |
| MS.gene060685 | MS.gene071700 | 0.813428 | 2.57E-51 | -1.69E-46 |
| MS.gene060802 | MS.gene071700 | 0.808631 | 2.82E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene071700 | 0.827195 | 1.79E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071700.t1 | MTR_3g077740 | 99.087 | 219 | 2 | 0 | 2 | 220 | 558 | 776 | 4.27e-151 | 442 |
| MS.gene071700.t1 | MTR_1g076720 | 36.916 | 214 | 126 | 4 | 6 | 217 | 64 | 270 | 4.21e-41 | 143 |
| MS.gene071700.t1 | MTR_6g060550 | 35.514 | 214 | 129 | 4 | 6 | 217 | 62 | 268 | 4.78e-40 | 140 |
| MS.gene071700.t1 | MTR_6g060550 | 35.514 | 214 | 129 | 4 | 6 | 217 | 62 | 268 | 7.80e-40 | 140 |
| MS.gene071700.t1 | MTR_6g060550 | 35.981 | 214 | 128 | 4 | 6 | 217 | 103 | 309 | 1.17e-39 | 140 |
| MS.gene071700.t1 | MTR_1g076730 | 36.279 | 215 | 129 | 3 | 5 | 217 | 216 | 424 | 1.34e-37 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071700.t1 | AT4G32180 | 90.367 | 218 | 21 | 0 | 3 | 220 | 565 | 782 | 3.45e-137 | 403 |
| MS.gene071700.t1 | AT4G32180 | 90.367 | 218 | 21 | 0 | 3 | 220 | 565 | 782 | 3.45e-137 | 403 |
| MS.gene071700.t1 | AT4G32180 | 90.367 | 218 | 21 | 0 | 3 | 220 | 565 | 782 | 7.77e-136 | 403 |
| MS.gene071700.t1 | AT2G17320 | 38.785 | 214 | 122 | 4 | 6 | 217 | 56 | 262 | 7.59e-44 | 150 |
| MS.gene071700.t1 | AT2G17320 | 38.785 | 214 | 122 | 4 | 6 | 217 | 56 | 262 | 8.53e-44 | 150 |
| MS.gene071700.t1 | AT4G35360 | 38.785 | 214 | 122 | 4 | 6 | 217 | 62 | 268 | 5.78e-43 | 148 |
| MS.gene071700.t1 | AT4G35360 | 38.785 | 214 | 122 | 4 | 6 | 217 | 62 | 268 | 5.78e-43 | 148 |
| MS.gene071700.t1 | AT2G17340 | 37.981 | 208 | 120 | 4 | 12 | 217 | 68 | 268 | 1.44e-41 | 145 |
| MS.gene071700.t1 | AT4G35360 | 41.765 | 170 | 91 | 3 | 49 | 217 | 9 | 171 | 1.01e-39 | 137 |
Find 0 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATCATTTTTTTAAGATT+TGG | + | 21149:11096-11115 | MS.gene071700:intron | 10.0% |
| !!! | AATTTAGTAATTTTAATGAA+TGG | + | 21149:11941-11960 | MS.gene071700:intron | 10.0% |
| !!! | AATTTATATTTTTATCCTGT+GGG | - | 21149:10323-10342 | MS.gene071700:intergenic | 15.0% |
| !!! | ATTTTCTAGTTTCTATATTT+TGG | + | 21149:11837-11856 | MS.gene071700:intron | 15.0% |
| !!! | TAATAAGTTTTCAAAAATCA+TGG | + | 21149:10554-10573 | MS.gene071700:intron | 15.0% |
| !! | AAAAATATAAATTGCTCAGA+TGG | + | 21149:10330-10349 | MS.gene071700:intron | 20.0% |
| !! | ATAGTATAAACAAGTGATAA+TGG | - | 21149:11333-11352 | MS.gene071700:intergenic | 20.0% |
| !! | TAGTATAAACAAGTGATAAT+GGG | - | 21149:11332-11351 | MS.gene071700:intergenic | 20.0% |
| !! | TAGTATAATTATTGAAGCAT+GGG | + | 21149:9941-9960 | MS.gene071700:intron | 20.0% |
| !! | TCAAAAAAATCCAAAACAAA+CGG | + | 21149:11305-11324 | MS.gene071700:intron | 20.0% |
| !! | TCTAGCATAAAAAAGATTTA+AGG | + | 21149:10248-10267 | MS.gene071700:intron | 20.0% |
| !! | TGTACAGATTTAAATAGAAA+AGG | - | 21149:10756-10775 | MS.gene071700:intergenic | 20.0% |
| !! | TTAGTATAATTATTGAAGCA+TGG | + | 21149:9940-9959 | MS.gene071700:intron | 20.0% |
| !!! | AGTAATTTTAATGAATGGAT+TGG | + | 21149:11946-11965 | MS.gene071700:intron | 20.0% |
| !!! | ATTTTTCCATGTGTAATATT+GGG | + | 21149:10973-10992 | MS.gene071700:intron | 20.0% |
| !!! | CAATTTATATTTTTATCCTG+TGG | - | 21149:10324-10343 | MS.gene071700:intergenic | 20.0% |
| !!! | GTTTAGAAAGAAATAGATTT+TGG | + | 21149:11143-11162 | MS.gene071700:intron | 20.0% |
| !!! | TCTATTTCTTTCTAAACATA+AGG | - | 21149:11140-11159 | MS.gene071700:intergenic | 20.0% |
| !!! | TCTTTTTTATGCTAGAAATT+TGG | - | 21149:10244-10263 | MS.gene071700:intergenic | 20.0% |
| !!! | TTATTTGTATGATTTGTATG+TGG | + | 21149:10820-10839 | MS.gene071700:intron | 20.0% |
| !!! | TTTTTATACCAAGATAACAA+TGG | + | 21149:12391-12410 | MS.gene071700:intron | 20.0% |
| ! | AGAGGATTGTAGTATTAATA+AGG | - | 21149:10922-10941 | MS.gene071700:intergenic | 25.0% |
| ! | ATATCGTATCCACAAAAAAT+AGG | - | 21149:10150-10169 | MS.gene071700:intergenic | 25.0% |
| ! | ATTTAACTGAAGTATAACAC+AGG | - | 21149:12150-12169 | MS.gene071700:intergenic | 25.0% |
| ! | ATTTCTACCATTGATATTTG+CGG | + | 21149:12325-12344 | MS.gene071700:intron | 25.0% |
| ! | CAAGTAATATTATGATCGAT+TGG | + | 21149:12063-12082 | MS.gene071700:intron | 25.0% |
| ! | TAAATCTCCAAAGTCAAATA+TGG | + | 21149:11993-12012 | MS.gene071700:intron | 25.0% |
| ! | TATTCAACTATCAACTATGA+TGG | - | 21149:11619-11638 | MS.gene071700:intergenic | 25.0% |
| !! | ATGATTTGTATGTGGATAAT+AGG | + | 21149:10828-10847 | MS.gene071700:intron | 25.0% |
| !! | CATTTTTCCATGTGTAATAT+TGG | + | 21149:10972-10991 | MS.gene071700:intron | 25.0% |
| !! | TGAAATAGCTTTTCATTTTG+AGG | + | 21149:11176-11195 | MS.gene071700:intron | 25.0% |
| !! | TGATTTGTATGTGGATAATA+GGG | + | 21149:10829-10848 | MS.gene071700:intron | 25.0% |
| !!! | TTACTGTTTGTTGATAATTC+AGG | + | 21149:11745-11764 | MS.gene071700:CDS | 25.0% |
| AAAAATAGGATCATGGTGTT+TGG | - | 21149:10136-10155 | None:intergenic | 30.0% | |
| AAGATTTATAGTGCGTTTCA+TGG | + | 21149:10056-10075 | MS.gene071700:intron | 30.0% | |
| ACTTCATAATCAACCCAATT+TGG | - | 21149:10400-10419 | MS.gene071700:intergenic | 30.0% | |
| AGATTTATTAGAAGCTAGAG+CGG | - | 21149:11365-11384 | MS.gene071700:intergenic | 30.0% | |
| ATCCACAAAAAATAGGATCA+TGG | - | 21149:10143-10162 | MS.gene071700:intergenic | 30.0% | |
| ATCTGTTATCTTTGATCAAC+TGG | + | 21149:10018-10037 | MS.gene071700:intron | 30.0% | |
| GTCACAAAAACGAACAAATT+AGG | - | 21149:10188-10207 | MS.gene071700:intergenic | 30.0% | |
| TATCACTCTAGTTATCTAGA+TGG | + | 21149:9964-9983 | MS.gene071700:intron | 30.0% | |
| TCATTATTACCTTGACAAGT+GGG | - | 21149:9897-9916 | MS.gene071700:intergenic | 30.0% | |
| TCTTCAAAGAGAGAATGTTA+GGG | + | 21149:11686-11705 | MS.gene071700:CDS | 30.0% | |
| TTATACTAAGCTATCAAAGC+AGG | - | 21149:9929-9948 | MS.gene071700:intergenic | 30.0% | |
| TTTCTACCATTGATATTTGC+GGG | + | 21149:12326-12345 | MS.gene071700:intron | 30.0% | |
| ! | ACATCAAATGAATAGGTTGA+TGG | + | 21149:10612-10631 | MS.gene071700:intron | 30.0% |
| ! | GTTTGTAGAACTTGATAGTA+TGG | + | 21149:10886-10905 | MS.gene071700:CDS | 30.0% |
| ! | TGTGTTGATCTCTATCATAA+AGG | + | 21149:11490-11509 | MS.gene071700:CDS | 30.0% |
| AAAGAACCCGCAAATATCAA+TGG | - | 21149:12335-12354 | None:intergenic | 35.0% | |
| AACAACATGCATTTCACAAG+AGG | - | 21149:10448-10467 | MS.gene071700:intergenic | 35.0% | |
| AACAGTAAAGCTCTTCTATG+AGG | - | 21149:11733-11752 | MS.gene071700:intergenic | 35.0% | |
| AAGTATTCCAGCTCCAAATT+GGG | + | 21149:10384-10403 | MS.gene071700:intron | 35.0% | |
| ACAGTAAAGCTCTTCTATGA+GGG | - | 21149:11732-11751 | MS.gene071700:intergenic | 35.0% | |
| ACCAAAGAGTCTCATATTAC+TGG | - | 21149:11396-11415 | MS.gene071700:intergenic | 35.0% | |
| AGACTGCTTACTCTAATTGA+AGG | + | 21149:11427-11446 | MS.gene071700:CDS | 35.0% | |
| ATGAAGCTCAAATCTCAGAA+AGG | - | 21149:11912-11931 | MS.gene071700:intergenic | 35.0% | |
| ATTGATATTTGCGGGTTCTT+TGG | + | 21149:12334-12353 | MS.gene071700:intron | 35.0% | |
| CACTTGCACATCAAATGAAT+AGG | + | 21149:10605-10624 | MS.gene071700:intron | 35.0% | |
| CCTCTGCTTTATACTTCTAT+AGG | - | 21149:10725-10744 | MS.gene071700:intergenic | 35.0% | |
| CTCTTCAAAGAGAGAATGTT+AGG | + | 21149:11685-11704 | MS.gene071700:CDS | 35.0% | |
| GAAACTTGTGCAACAACAAA+TGG | + | 21149:9986-10005 | MS.gene071700:intron | 35.0% | |
| GTCATTATTACCTTGACAAG+TGG | - | 21149:9898-9917 | MS.gene071700:intergenic | 35.0% | |
| TAAGTATTCCAGCTCCAAAT+TGG | + | 21149:10383-10402 | MS.gene071700:intron | 35.0% | |
| TACTGTAACAACAAACTAGC+TGG | - | 21149:12178-12197 | MS.gene071700:intergenic | 35.0% | |
| TCAAGTTCTACAAACAAGTC+AGG | - | 21149:10881-10900 | MS.gene071700:intergenic | 35.0% | |
| TGTGGATAATAGGGAAAATG+AGG | + | 21149:10838-10857 | MS.gene071700:intron | 35.0% | |
| TTCCCTCATTTCCAATAGAT+TGG | - | 21149:10671-10690 | MS.gene071700:intergenic | 35.0% | |
| TTCTATAGGCATCAACAAAC+TGG | - | 21149:10711-10730 | MS.gene071700:intergenic | 35.0% | |
| TTGATGTGCAAGTGCATTAA+TGG | - | 21149:10599-10618 | MS.gene071700:intergenic | 35.0% | |
| TTTGAATGATGTGACTGCAA+TGG | + | 21149:12449-12468 | MS.gene071700:CDS | 35.0% | |
| ! | AACTGATGATGCCAAAAGAA+GGG | + | 21149:9844-9863 | MS.gene071700:CDS | 35.0% |
| ! | AGAACTTGATAGTATGGATG+AGG | + | 21149:10892-10911 | MS.gene071700:CDS | 35.0% |
| ! | ATCCTCTCAATTTTCCCTAT+AGG | + | 21149:10935-10954 | MS.gene071700:intron | 35.0% |
| ! | CCTATAGAAGTATAAAGCAG+AGG | + | 21149:10722-10741 | MS.gene071700:CDS | 35.0% |
| ! | GCTAGAAATTTGGTTGACTT+TGG | - | 21149:10234-10253 | MS.gene071700:intergenic | 35.0% |
| ! | GTTCAGAGTTTCAATCGTTT+TGG | + | 21149:10488-10507 | MS.gene071700:intron | 35.0% |
| ! | TCCTCTCAATTTTCCCTATA+GGG | + | 21149:10936-10955 | MS.gene071700:intron | 35.0% |
| ! | TGGCTACATTCTAGTTAAAC+TGG | + | 21149:11966-11985 | MS.gene071700:intron | 35.0% |
| ! | TTCCTCTTTCACAGTTTTAC+TGG | + | 21149:10284-10303 | MS.gene071700:intron | 35.0% |
| !! | GTTCGTTTTTGTGACAACTT+GGG | + | 21149:10193-10212 | MS.gene071700:intron | 35.0% |
| !! | TCAAATGAATAGGTTGATGG+AGG | + | 21149:10615-10634 | MS.gene071700:intron | 35.0% |
| !! | TGTTCGTTTTTGTGACAACT+TGG | + | 21149:10192-10211 | MS.gene071700:intron | 35.0% |
| !!! | CACCATGATCCTATTTTTTG+TGG | + | 21149:10138-10157 | MS.gene071700:intron | 35.0% |
| AAAAAAACTGCGCCAAAGAG+AGG | - | 21149:12035-12054 | None:intergenic | 40.0% | |
| AAAAAACTGCGCCAAAGAGA+GGG | - | 21149:12034-12053 | None:intergenic | 40.0% | |
| AAACTGTGAAAGAGGAAGAG+TGG | - | 21149:10281-10300 | None:intergenic | 40.0% | |
| AAAGAGAGAATGTTAGGGAC+CGG | + | 21149:11691-11710 | MS.gene071700:CDS | 40.0% | |
| AACGCACCCAATATTACACA+TGG | - | 21149:10982-11001 | MS.gene071700:intergenic | 40.0% | |
| ACCAAGATAACAATGGATGC+AGG | + | 21149:12398-12417 | MS.gene071700:intron | 40.0% | |
| ACCTGCATCCATTGTTATCT+TGG | - | 21149:12402-12421 | MS.gene071700:intergenic | 40.0% | |
| AGCCAGTAAAACTGTGAAAG+AGG | - | 21149:10289-10308 | MS.gene071700:intergenic | 40.0% | |
| AGTAAAGCTCTTCTATGAGG+GGG | - | 21149:11730-11749 | MS.gene071700:intergenic | 40.0% | |
| ATAGAGATCAACACATGCAC+GGG | - | 21149:11485-11504 | MS.gene071700:intergenic | 40.0% | |
| ATATGAGACTCTTTGGTTGC+AGG | + | 21149:11399-11418 | MS.gene071700:intron | 40.0% | |
| ATGCTCAAATTCCCTCTCTT+TGG | + | 21149:12020-12039 | MS.gene071700:intron | 40.0% | |
| CAGTAAAGCTCTTCTATGAG+GGG | - | 21149:11731-11750 | MS.gene071700:intergenic | 40.0% | |
| CTTGTTAAGCTTGCATAGTC+AGG | + | 21149:12222-12241 | MS.gene071700:intron | 40.0% | |
| GAGAGGAATTTGAGAAAGAC+AGG | - | 21149:12298-12317 | MS.gene071700:intergenic | 40.0% | |
| GATAGAGATCAACACATGCA+CGG | - | 21149:11486-11505 | MS.gene071700:intergenic | 40.0% | |
| GCCAGTAATATGAGACTCTT+TGG | + | 21149:11392-11411 | MS.gene071700:intron | 40.0% | |
| GGAGCTGGAATACTTATTTC+TGG | - | 21149:10379-10398 | MS.gene071700:intergenic | 40.0% | |
| GGCCAATCTATTGGAAATGA+GGG | + | 21149:10666-10685 | MS.gene071700:CDS | 40.0% | |
| TGGCCAATCTATTGGAAATG+AGG | + | 21149:10665-10684 | MS.gene071700:CDS | 40.0% | |
| ! | ACTGATGATGCCAAAAGAAG+GGG | + | 21149:9845-9864 | MS.gene071700:CDS | 40.0% |
| ! | CATGCAGCCATATTTGACTT+TGG | - | 21149:12003-12022 | MS.gene071700:intergenic | 40.0% |
| ! | CCTCTCAATTTTCCCTATAG+GGG | + | 21149:10937-10956 | MS.gene071700:intron | 40.0% |
| ! | CTCTCAATTTTCCCTATAGG+GGG | + | 21149:10938-10957 | MS.gene071700:intron | 40.0% |
| ! | GAACTGATGATGCCAAAAGA+AGG | + | 21149:9843-9862 | MS.gene071700:CDS | 40.0% |
| ! | TAATCAACCCAATTTGGAGC+TGG | - | 21149:10394-10413 | MS.gene071700:intergenic | 40.0% |
| ! | TCGCTGCAAACATTTTTGAC+TGG | + | 21149:11455-11474 | MS.gene071700:CDS | 40.0% |
| ! | TCTCAATTTTCCCTATAGGG+GGG | + | 21149:10939-10958 | MS.gene071700:intron | 40.0% |
| ! | TCTTTCACAGTTTTACTGGC+TGG | + | 21149:10288-10307 | MS.gene071700:intron | 40.0% |
| !! | AATATTGACTCCCCCCTATA+GGG | - | 21149:10952-10971 | MS.gene071700:intergenic | 40.0% |
| !! | CGCTGCAAACATTTTTGACT+GGG | + | 21149:11456-11475 | MS.gene071700:CDS | 40.0% |
| !! | GCTGCAAACATTTTTGACTG+GGG | + | 21149:11457-11476 | MS.gene071700:CDS | 40.0% |
| !!! | AAAAGCATCACCCCTTCTTT+TGG | - | 21149:9858-9877 | MS.gene071700:intergenic | 40.0% |
| !!! | GATAATGGGTCCGTTTGTTT+TGG | - | 21149:11318-11337 | MS.gene071700:intergenic | 40.0% |
| AACTCACTTCAGTTCCACGA+CGG | - | 21149:11816-11835 | MS.gene071700:intergenic | 45.0% | |
| AAGAGAGAATGTTAGGGACC+GGG | + | 21149:11692-11711 | MS.gene071700:CDS | 45.0% | |
| ATAAAATGCGCAGACCTTGG+CGG | + | 21149:11545-11564 | MS.gene071700:CDS | 45.0% | |
| ATCATCAGTTCCACCTTCAC+TGG | - | 21149:9834-9853 | MS.gene071700:intergenic | 45.0% | |
| CCCCTATAGGGAAAATTGAG+AGG | - | 21149:10940-10959 | MS.gene071700:intergenic | 45.0% | |
| GCAATAAAATGCGCAGACCT+TGG | + | 21149:11542-11561 | MS.gene071700:CDS | 45.0% | |
| GCAGTCACATCATTCAAAGC+AGG | - | 21149:12447-12466 | MS.gene071700:intergenic | 45.0% | |
| GCTTCCTGATATTGTAGCTG+AGG | + | 21149:12473-12492 | MS.gene071700:CDS | 45.0% | |
| GTTAGGCTTGGCCAATCTAT+TGG | + | 21149:10657-10676 | MS.gene071700:CDS | 45.0% | |
| TGGCTGCTATACAGTCACTT+TGG | + | 21149:12354-12373 | MS.gene071700:intron | 45.0% | |
| TGGTAGAAATTCGTGCAGAG+AGG | - | 21149:12315-12334 | MS.gene071700:intergenic | 45.0% | |
| !! | AAATGAGGGAAGAGTGCTTG+AGG | + | 21149:10680-10699 | MS.gene071700:CDS | 45.0% |
| !! | AATGAGGGAAGAGTGCTTGA+GGG | + | 21149:10681-10700 | MS.gene071700:CDS | 45.0% |
| !! | CAGGTGCTGACATTGTTCTA+GGG | + | 21149:11764-11783 | MS.gene071700:CDS | 45.0% |
| !! | GAATATTGACTCCCCCCTAT+AGG | - | 21149:10953-10972 | MS.gene071700:intergenic | 45.0% |
| !! | TCAGGTGCTGACATTGTTCT+AGG | + | 21149:11763-11782 | MS.gene071700:CDS | 45.0% |
| !! | AAAAAAAAAAAAAATTATGT+TGG | - | 21149:11642-11661 | MS.gene071700:intergenic | 5.0% |
| !!! | AAATTATTTTTTTAACAAAA+TGG | + | 21149:11203-11222 | MS.gene071700:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTAATCT+AGG | + | 21149:11648-11667 | MS.gene071700:intron | 5.0% |
| AGAGAGAATGTTAGGGACCG+GGG | + | 21149:11693-11712 | MS.gene071700:CDS | 50.0% | |
| ATGGAGGAGCCTTCTGCATA+CGG | + | 21149:10631-10650 | MS.gene071700:CDS | 50.0% | |
| CCTTCTGCATACGGCAAGTT+AGG | + | 21149:10640-10659 | MS.gene071700:CDS | 50.0% | |
| GCAGCCTCAGCTACAATATC+AGG | - | 21149:12480-12499 | MS.gene071700:intergenic | 50.0% | |
| GCAGTGCAGTGTGTAATTGC+AGG | - | 21149:12257-12276 | MS.gene071700:intergenic | 50.0% | |
| TAAAATGCGCAGACCTTGGC+GGG | + | 21149:11546-11565 | MS.gene071700:CDS | 50.0% | |
| TGCATACGGCAAGTTAGGCT+TGG | + | 21149:10645-10664 | MS.gene071700:CDS | 50.0% | |
| TTAATTCCACCTACCCGCCA+AGG | - | 21149:11562-11581 | MS.gene071700:intergenic | 50.0% | |
| ! | CCTAACTTGCCGTATGCAGA+AGG | - | 21149:10643-10662 | MS.gene071700:intergenic | 50.0% |
| ! | CGTTTTCTGCCCACTTGTCA+AGG | + | 21149:9885-9904 | MS.gene071700:CDS | 50.0% |
| !! | TGTTCTAGGGATGCTTCCTC+TGG | + | 21149:11777-11796 | MS.gene071700:CDS | 50.0% |
| AGGGATGCTTCCTCTGGCTA+GGG | + | 21149:11783-11802 | MS.gene071700:CDS | 55.0% | |
| ATGCAGGCTGTTGCCAGTGA+AGG | + | 21149:9818-9837 | MS.gene071700:CDS | 55.0% | |
| GGCTGGATCATGAATCCCAC+AGG | + | 21149:10305-10324 | MS.gene071700:intron | 55.0% | |
| TAGGGATGCTTCCTCTGGCT+AGG | + | 21149:11782-11801 | MS.gene071700:CDS | 55.0% | |
| TCACTTCAGTTCCACGACGG+AGG | - | 21149:11813-11832 | MS.gene071700:intergenic | 55.0% | |
| AGGGGGCTTCTTCTTGTCCC+CGG | - | 21149:11713-11732 | MS.gene071700:intergenic | 60.0% | |
| CAGGCTGTTGCCAGTGAAGG+TGG | + | 21149:9821-9840 | MS.gene071700:CDS | 60.0% | |
| ! | ATGCGCAGACCTTGGCGGGT+AGG | + | 21149:11550-11569 | MS.gene071700:intron | 65.0% |
| CGGAGGAGCTCCCTAGCCAG+AGG | - | 21149:11796-11815 | MS.gene071700:intergenic | 70.0% | |
| GCTAGGGAGCTCCTCCGTCG+TGG | + | 21149:11799-11818 | MS.gene071700:CDS | 70.0% | |
| ! | CGCAGACCTTGGCGGGTAGG+TGG | + | 21149:11553-11572 | MS.gene071700:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 21149 | gene | 9818 | 12503 | 9818 | ID=MS.gene071700 |
| 21149 | mRNA | 9818 | 12503 | 9818 | ID=MS.gene071700.t1;Parent=MS.gene071700 |
| 21149 | exon | 9818 | 9906 | 9818 | ID=MS.gene071700.t1.exon1;Parent=MS.gene071700.t1 |
| 21149 | CDS | 9818 | 9906 | 9818 | ID=cds.MS.gene071700.t1;Parent=MS.gene071700.t1 |
| 21149 | exon | 10627 | 10743 | 10627 | ID=MS.gene071700.t1.exon2;Parent=MS.gene071700.t1 |
| 21149 | CDS | 10627 | 10743 | 10627 | ID=cds.MS.gene071700.t1;Parent=MS.gene071700.t1 |
| 21149 | exon | 10850 | 10913 | 10850 | ID=MS.gene071700.t1.exon3;Parent=MS.gene071700.t1 |
| 21149 | CDS | 10850 | 10913 | 10850 | ID=cds.MS.gene071700.t1;Parent=MS.gene071700.t1 |
| 21149 | exon | 11421 | 11567 | 11421 | ID=MS.gene071700.t1.exon4;Parent=MS.gene071700.t1 |
| 21149 | CDS | 11421 | 11567 | 11421 | ID=cds.MS.gene071700.t1;Parent=MS.gene071700.t1 |
| 21149 | exon | 11670 | 11828 | 11670 | ID=MS.gene071700.t1.exon5;Parent=MS.gene071700.t1 |
| 21149 | CDS | 11670 | 11828 | 11670 | ID=cds.MS.gene071700.t1;Parent=MS.gene071700.t1 |
| 21149 | exon | 12420 | 12503 | 12420 | ID=MS.gene071700.t1.exon6;Parent=MS.gene071700.t1 |
| 21149 | CDS | 12420 | 12503 | 12420 | ID=cds.MS.gene071700.t1;Parent=MS.gene071700.t1 |
| Gene Sequence |
| Protein sequence |
