Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09091.t1 | XP_013455961.1 | 92.9 | 254 | 15 | 2 | 1 | 254 | 74 | 324 | 1.80E-82 | 315.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09091.t1 | Q9FJH5 | 58.9 | 265 | 83 | 4 | 1 | 254 | 34 | 283 | 3.4e-34 | 146.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09091.t1 | A0A072UJX7 | 92.9 | 254 | 15 | 2 | 1 | 254 | 74 | 324 | 1.3e-82 | 315.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene09091 | 0.820046 | 8.44E-53 | -1.69E-46 |
| MS.gene049159 | MS.gene09091 | 0.842891 | 1.96E-58 | -1.69E-46 |
| MS.gene049190 | MS.gene09091 | 0.807751 | 4.34E-50 | -1.69E-46 |
| MS.gene049501 | MS.gene09091 | 0.845737 | 3.37E-59 | -1.69E-46 |
| MS.gene049850 | MS.gene09091 | 0.83641 | 9.51E-57 | -1.69E-46 |
| MS.gene049887 | MS.gene09091 | 0.801458 | 8.92E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene09091 | 0.814988 | 1.16E-51 | -1.69E-46 |
| MS.gene050719 | MS.gene09091 | 0.817065 | 4.00E-52 | -1.69E-46 |
| MS.gene050721 | MS.gene09091 | 0.813624 | 2.33E-51 | -1.69E-46 |
| MS.gene050724 | MS.gene09091 | 0.817277 | 3.59E-52 | -1.69E-46 |
| MS.gene050780 | MS.gene09091 | 0.803052 | 4.19E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene09091 | 0.818328 | 2.08E-52 | -1.69E-46 |
| MS.gene050815 | MS.gene09091 | 0.825584 | 4.33E-54 | -1.69E-46 |
| MS.gene050844 | MS.gene09091 | 0.821934 | 3.10E-53 | -1.69E-46 |
| MS.gene050959 | MS.gene09091 | 0.828433 | 9.01E-55 | -1.69E-46 |
| MS.gene051247 | MS.gene09091 | 0.856824 | 2.48E-62 | -1.69E-46 |
| MS.gene051279 | MS.gene09091 | 0.801379 | 9.26E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene09091 | 0.808155 | 3.56E-50 | -1.69E-46 |
| MS.gene051388 | MS.gene09091 | 0.831857 | 1.32E-55 | -1.69E-46 |
| MS.gene05157 | MS.gene09091 | 0.811764 | 5.95E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene09091 | 0.801869 | 7.34E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene09091 | 0.841736 | 3.97E-58 | -1.69E-46 |
| MS.gene051720 | MS.gene09091 | 0.833916 | 4.05E-56 | -1.69E-46 |
| MS.gene051744 | MS.gene09091 | 0.839181 | 1.85E-57 | -1.69E-46 |
| MS.gene052020 | MS.gene09091 | 0.858722 | 6.78E-63 | -1.69E-46 |
| MS.gene052133 | MS.gene09091 | 0.821587 | 3.73E-53 | -1.69E-46 |
| MS.gene052323 | MS.gene09091 | 0.808609 | 2.85E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene09091 | 0.843311 | 1.51E-58 | -1.69E-46 |
| MS.gene052582 | MS.gene09091 | 0.803244 | 3.82E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene09091 | 0.833278 | 5.85E-56 | -1.69E-46 |
| MS.gene052612 | MS.gene09091 | 0.807907 | 4.02E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene09091 | 0.808142 | 3.58E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene09091 | 0.845961 | 2.93E-59 | -1.69E-46 |
| MS.gene052732 | MS.gene09091 | 0.807667 | 4.52E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene09091 | 0.802546 | 5.33E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene09091 | 0.844596 | 6.86E-59 | -1.69E-46 |
| MS.gene052896 | MS.gene09091 | 0.864018 | 1.64E-64 | -1.69E-46 |
| MS.gene053008 | MS.gene09091 | 0.806054 | 9.91E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene09091 | 0.855043 | 8.22E-62 | -1.69E-46 |
| MS.gene053226 | MS.gene09091 | 0.822937 | 1.81E-53 | -1.69E-46 |
| MS.gene053998 | MS.gene09091 | 0.805985 | 1.02E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene09091 | 0.812622 | 3.86E-51 | -1.69E-46 |
| MS.gene054472 | MS.gene09091 | 0.816024 | 6.85E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene09091 | 0.857812 | 1.26E-62 | -1.69E-46 |
| MS.gene05462 | MS.gene09091 | 0.804371 | 2.23E-49 | -1.69E-46 |
| MS.gene05468 | MS.gene09091 | 0.824848 | 6.46E-54 | -1.69E-46 |
| MS.gene055465 | MS.gene09091 | 0.868007 | 8.99E-66 | -1.69E-46 |
| MS.gene055466 | MS.gene09091 | 0.871914 | 4.75E-67 | -1.69E-46 |
| MS.gene055468 | MS.gene09091 | 0.851994 | 6.18E-61 | -1.69E-46 |
| MS.gene055469 | MS.gene09091 | 0.808062 | 3.73E-50 | -1.69E-46 |
| MS.gene055512 | MS.gene09091 | 0.82928 | 5.62E-55 | -1.69E-46 |
| MS.gene055580 | MS.gene09091 | -0.853082 | 3.02E-61 | -1.69E-46 |
| MS.gene055778 | MS.gene09091 | 0.819352 | 1.22E-52 | -1.69E-46 |
| MS.gene056043 | MS.gene09091 | -0.840808 | 6.96E-58 | -1.69E-46 |
| MS.gene05604 | MS.gene09091 | 0.808919 | 2.44E-50 | -1.69E-46 |
| MS.gene056553 | MS.gene09091 | 0.831016 | 2.12E-55 | -1.69E-46 |
| MS.gene057314 | MS.gene09091 | 0.809068 | 2.27E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene09091 | 0.820517 | 6.58E-53 | -1.69E-46 |
| MS.gene057446 | MS.gene09091 | 0.811309 | 7.47E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene09091 | 0.806026 | 1.00E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene09091 | 0.872427 | 3.21E-67 | -1.69E-46 |
| MS.gene058010 | MS.gene09091 | 0.8079 | 4.03E-50 | -1.69E-46 |
| MS.gene058087 | MS.gene09091 | 0.809621 | 1.73E-50 | -1.69E-46 |
| MS.gene058168 | MS.gene09091 | 0.810312 | 1.23E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene09091 | 0.838035 | 3.65E-57 | -1.69E-46 |
| MS.gene058636 | MS.gene09091 | 0.801305 | 9.59E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene09091 | 0.811476 | 6.87E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene09091 | 0.818508 | 1.89E-52 | -1.69E-46 |
| MS.gene059937 | MS.gene09091 | 0.807335 | 5.32E-50 | -1.69E-46 |
| MS.gene060167 | MS.gene09091 | 0.810153 | 1.33E-50 | -1.69E-46 |
| MS.gene060312 | MS.gene09091 | 0.814165 | 1.77E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene09091 | 0.812604 | 3.90E-51 | -1.69E-46 |
| MS.gene060429 | MS.gene09091 | 0.803586 | 3.25E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene09091 | 0.805558 | 1.26E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene09091 | 0.815243 | 1.02E-51 | -1.69E-46 |
| MS.gene060803 | MS.gene09091 | 0.80245 | 5.58E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09091.t1 | MTR_4g057765 | 95.669 | 254 | 8 | 3 | 1 | 254 | 74 | 324 | 1.10e-169 | 471 |
| MS.gene09091.t1 | MTR_2g095480 | 56.410 | 156 | 64 | 3 | 1 | 155 | 73 | 225 | 6.66e-45 | 154 |
| MS.gene09091.t1 | MTR_7g101930 | 35.045 | 331 | 136 | 7 | 1 | 254 | 21 | 349 | 1.07e-42 | 148 |
| MS.gene09091.t1 | MTR_7g101930 | 41.573 | 89 | 49 | 1 | 80 | 165 | 3 | 91 | 1.39e-12 | 67.0 |
| MS.gene09091.t1 | MTR_1g063210 | 39.216 | 306 | 130 | 5 | 1 | 254 | 32 | 333 | 3.98e-37 | 133 |
| MS.gene09091.t1 | MTR_0041s0140 | 42.735 | 234 | 101 | 6 | 1 | 215 | 21 | 240 | 3.30e-35 | 126 |
| MS.gene09091.t1 | MTR_0041s0140 | 41.573 | 89 | 49 | 1 | 80 | 165 | 3 | 91 | 4.88e-12 | 64.3 |
| MS.gene09091.t1 | MTR_3g435930 | 30.469 | 256 | 124 | 6 | 1 | 254 | 34 | 237 | 3.31e-29 | 110 |
| MS.gene09091.t1 | MTR_8g096700 | 29.856 | 278 | 156 | 6 | 1 | 254 | 59 | 321 | 3.55e-25 | 101 |
| MS.gene09091.t1 | MTR_2g026685 | 33.594 | 256 | 141 | 4 | 1 | 254 | 1 | 229 | 1.44e-24 | 98.2 |
| MS.gene09091.t1 | MTR_2g026685 | 33.594 | 256 | 141 | 4 | 1 | 254 | 41 | 269 | 4.75e-24 | 97.8 |
| MS.gene09091.t1 | MTR_2g026685 | 33.594 | 256 | 141 | 4 | 1 | 254 | 42 | 270 | 4.84e-24 | 97.8 |
| MS.gene09091.t1 | MTR_3g093020 | 28.352 | 261 | 158 | 5 | 1 | 253 | 44 | 283 | 4.75e-21 | 89.7 |
| MS.gene09091.t1 | MTR_8g010540 | 29.771 | 262 | 137 | 6 | 1 | 251 | 37 | 262 | 4.12e-20 | 87.0 |
| MS.gene09091.t1 | MTR_3g099040 | 29.057 | 265 | 173 | 5 | 1 | 254 | 42 | 302 | 4.96e-18 | 82.0 |
| MS.gene09091.t1 | MTR_3g099030 | 33.557 | 149 | 96 | 2 | 1 | 148 | 42 | 188 | 5.89e-18 | 81.3 |
| MS.gene09091.t1 | MTR_5g069180 | 27.097 | 155 | 104 | 2 | 1 | 155 | 61 | 206 | 3.85e-16 | 77.0 |
| MS.gene09091.t1 | MTR_4g006650 | 35.088 | 114 | 72 | 2 | 1 | 113 | 175 | 287 | 9.87e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09091.t1 | AT5G60800 | 47.955 | 269 | 106 | 4 | 1 | 254 | 34 | 283 | 1.58e-53 | 174 |
| MS.gene09091.t1 | AT5G60800 | 47.584 | 269 | 107 | 4 | 1 | 254 | 34 | 283 | 1.56e-52 | 172 |
| MS.gene09091.t1 | AT5G03380 | 40.415 | 193 | 82 | 3 | 1 | 160 | 5 | 197 | 4.40e-34 | 126 |
| MS.gene09091.t1 | AT5G03380 | 40.415 | 193 | 82 | 3 | 1 | 160 | 32 | 224 | 9.46e-34 | 126 |
| MS.gene09091.t1 | AT2G36950 | 34.940 | 332 | 135 | 8 | 1 | 254 | 58 | 386 | 3.76e-30 | 116 |
| MS.gene09091.t1 | AT2G28090 | 43.396 | 159 | 78 | 3 | 1 | 155 | 37 | 187 | 1.50e-28 | 108 |
| MS.gene09091.t1 | AT5G50740 | 30.682 | 264 | 158 | 5 | 1 | 254 | 35 | 283 | 2.93e-26 | 103 |
| MS.gene09091.t1 | AT5G50740 | 30.682 | 264 | 158 | 5 | 1 | 254 | 35 | 283 | 2.93e-26 | 103 |
| MS.gene09091.t1 | AT5G50740 | 30.682 | 264 | 158 | 5 | 1 | 254 | 42 | 290 | 3.37e-26 | 103 |
| MS.gene09091.t1 | AT3G02960 | 30.620 | 258 | 120 | 8 | 1 | 254 | 44 | 246 | 9.48e-26 | 101 |
| MS.gene09091.t1 | AT5G24580 | 26.616 | 263 | 175 | 4 | 1 | 253 | 64 | 318 | 1.14e-21 | 92.4 |
| MS.gene09091.t1 | AT5G24580 | 26.616 | 263 | 175 | 4 | 1 | 253 | 64 | 318 | 1.14e-21 | 92.4 |
| MS.gene09091.t1 | AT5G24580 | 26.616 | 263 | 175 | 4 | 1 | 253 | 63 | 317 | 1.26e-21 | 92.0 |
| MS.gene09091.t1 | AT5G24580 | 26.236 | 263 | 173 | 5 | 1 | 253 | 64 | 315 | 2.55e-18 | 82.8 |
| MS.gene09091.t1 | AT1G29000 | 31.410 | 156 | 106 | 1 | 1 | 155 | 23 | 178 | 5.81e-16 | 75.9 |
| MS.gene09091.t1 | AT1G29000 | 31.410 | 156 | 106 | 1 | 1 | 155 | 23 | 178 | 5.81e-16 | 75.9 |
| MS.gene09091.t1 | AT5G50740 | 36.000 | 125 | 62 | 3 | 1 | 116 | 35 | 150 | 3.89e-15 | 71.2 |
| MS.gene09091.t1 | AT5G50740 | 36.000 | 125 | 62 | 3 | 1 | 116 | 42 | 157 | 6.07e-15 | 70.9 |
| MS.gene09091.t1 | AT5G63530 | 34.459 | 148 | 96 | 1 | 1 | 147 | 66 | 213 | 1.05e-14 | 73.2 |
| MS.gene09091.t1 | AT5G63530 | 34.459 | 148 | 96 | 1 | 1 | 147 | 81 | 228 | 1.07e-14 | 73.2 |
| MS.gene09091.t1 | AT5G24580 | 26.180 | 233 | 154 | 4 | 31 | 253 | 7 | 231 | 2.55e-14 | 70.5 |
Find 57 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTGTTGTTATCCTTCT+TGG | 0.114690 | 4.1:+40123376 | None:intergenic |
| CCACCTTCCTTGTCTTTCTT+TGG | 0.170033 | 4.1:+40122876 | None:intergenic |
| GTTCAACAACCCTTTGGTTT+TGG | 0.297632 | 4.1:-40122732 | MS.gene09091:CDS |
| TTCTTGTTGTTATCCTTCTT+GGG | 0.350090 | 4.1:+40123377 | None:intergenic |
| GATGGAAATGAAGGAGGAGG+TGG | 0.350616 | 4.1:-40122837 | MS.gene09091:CDS |
| GGAAATGAAGGAGGAGGTGG+GGG | 0.362659 | 4.1:-40122834 | MS.gene09091:CDS |
| TCAAACCTTTGATGCTGTTA+AGG | 0.370035 | 4.1:+40123672 | None:intergenic |
| TGGAAATGAAGGAGGAGGTG+GGG | 0.385436 | 4.1:-40122835 | MS.gene09091:CDS |
| CAAGGATGTATTGATAAGAT+TGG | 0.393223 | 4.1:-40123153 | MS.gene09091:CDS |
| AGGAGGAGAAGTTAAGATAA+TGG | 0.394798 | 4.1:-40122763 | MS.gene09091:CDS |
| TTTGATGCTGTTAAGGTGTT+TGG | 0.396644 | 4.1:+40123679 | None:intergenic |
| ATCACAGAAGCTTAAGAGAA+AGG | 0.414583 | 4.1:-40122913 | MS.gene09091:CDS |
| TATGAATATTTAACATCTCT+TGG | 0.428843 | 4.1:+40122664 | None:intergenic |
| TATATAGTTCAACAACCCTT+TGG | 0.433495 | 4.1:-40122738 | MS.gene09091:CDS |
| GACAAGGAAGGTGGTGGTGG+TGG | 0.446982 | 4.1:-40122867 | MS.gene09091:CDS |
| ATGGAAATGAAGGAGGAGGT+GGG | 0.453141 | 4.1:-40122836 | MS.gene09091:CDS |
| AAGGATGTATTGATAAGATT+GGG | 0.459716 | 4.1:-40123152 | MS.gene09091:CDS |
| TTGTTATCCTTCTTGGGAAG+TGG | 0.460354 | 4.1:+40123383 | None:intergenic |
| GGTGGTGGTGGTGAGAAGGA+TGG | 0.477883 | 4.1:-40122855 | MS.gene09091:CDS |
| TTCTCATCACTAAACATTTG+TGG | 0.482907 | 4.1:+40122627 | None:intergenic |
| GTGAAAGCAGAGAGTGAAAC+CGG | 0.485601 | 4.1:-40123494 | MS.gene09091:CDS |
| GGGGTCCACATTTCCGGTGA+CGG | 0.497438 | 4.1:+40123463 | None:intergenic |
| CATTTCACCACTTCCCAAGA+AGG | 0.504323 | 4.1:-40123390 | MS.gene09091:CDS |
| GATGGTAATAACAATGAAGC+AGG | 0.507061 | 4.1:-40122783 | MS.gene09091:CDS |
| AAAGACAAGGAAGGTGGTGG+TGG | 0.508002 | 4.1:-40122870 | MS.gene09091:CDS |
| TATGGAAATGTGAATGTTGA+AGG | 0.513188 | 4.1:-40122708 | MS.gene09091:CDS |
| CACATGACAATGCAAGCATT+AGG | 0.517378 | 4.1:+40122603 | None:intergenic |
| AAAATTGTTATGAAAACTAA+AGG | 0.517522 | 4.1:-40123129 | MS.gene09091:intron |
| GAGGTAAGAAGAAGAACAAG+GGG | 0.518923 | 4.1:-40122812 | MS.gene09091:CDS |
| GAAAGATAATGTGACTGTGA+AGG | 0.527421 | 4.1:-40122970 | MS.gene09091:CDS |
| AAGGATGGAAATGAAGGAGG+AGG | 0.528175 | 4.1:-40122840 | MS.gene09091:CDS |
| GAAGCTTAAGAGAAAGGTTG+AGG | 0.546953 | 4.1:-40122907 | MS.gene09091:CDS |
| ACCGGAAAAGTAACCGTCAC+CGG | 0.547833 | 4.1:-40123476 | MS.gene09091:CDS |
| TTTCCATAACCAAAACCAAA+GGG | 0.548425 | 4.1:+40122723 | None:intergenic |
| AAAGATAATGTGACTGTGAA+GGG | 0.555744 | 4.1:-40122969 | MS.gene09091:CDS |
| AAACACCTTAACAGCATCAA+AGG | 0.557937 | 4.1:-40123677 | MS.gene09091:intron |
| GGTGAGAAGGATGGAAATGA+AGG | 0.559036 | 4.1:-40122846 | MS.gene09091:CDS |
| GGTAAGAAGAAGAACAAGGG+GGG | 0.560885 | 4.1:-40122810 | MS.gene09091:CDS |
| AGGTAAGAAGAAGAACAAGG+GGG | 0.566617 | 4.1:-40122811 | MS.gene09091:CDS |
| TACCAATTTCAAAACAGAAG+TGG | 0.568866 | 4.1:+40123185 | None:intergenic |
| AGTAACCGTCACCGGAAATG+TGG | 0.571019 | 4.1:-40123468 | MS.gene09091:CDS |
| GAGAAGGATGGAAATGAAGG+AGG | 0.571182 | 4.1:-40122843 | MS.gene09091:CDS |
| CAAGAAGGATAACAACAAGA+AGG | 0.577155 | 4.1:-40123375 | MS.gene09091:CDS |
| GGAGGTAAGAAGAAGAACAA+GGG | 0.601818 | 4.1:-40122813 | MS.gene09091:CDS |
| GGGAGGTAAGAAGAAGAACA+AGG | 0.606219 | 4.1:-40122814 | MS.gene09091:CDS |
| AAAGTTTATATGCATTGCGA+CGG | 0.606923 | 4.1:-40123719 | None:intergenic |
| ATTTCCATAACCAAAACCAA+AGG | 0.608318 | 4.1:+40122722 | None:intergenic |
| GCTTAAGAGAAAGGTTGAGG+TGG | 0.623795 | 4.1:-40122904 | MS.gene09091:CDS |
| AAATTGGTACTACACTGTCA+AGG | 0.625937 | 4.1:-40123171 | MS.gene09091:CDS |
| TCATCACTAAACATTTGTGG+TGG | 0.630320 | 4.1:+40122630 | None:intergenic |
| AAGAAAGACAAGGAAGGTGG+TGG | 0.634788 | 4.1:-40122873 | MS.gene09091:CDS |
| GGTAATAACAATGAAGCAGG+AGG | 0.639502 | 4.1:-40122780 | MS.gene09091:CDS |
| TGTGACTGTGAAGGGTACAA+TGG | 0.642558 | 4.1:-40122961 | MS.gene09091:CDS |
| CCAAAGAAAGACAAGGAAGG+TGG | 0.648516 | 4.1:-40122876 | MS.gene09091:CDS |
| CAACCAAAGAAAGACAAGGA+AGG | 0.655515 | 4.1:-40122879 | MS.gene09091:CDS |
| ATGGAAATGTGAATGTTGAA+GGG | 0.655852 | 4.1:-40122707 | MS.gene09091:CDS |
| GGTTCAACCAAAGAAAGACA+AGG | 0.710411 | 4.1:-40122883 | MS.gene09091:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGATTTGTTTTAATTTTT+TGG | - | chr4.1:40123065-40123084 | MS.gene09091:intron | 10.0% |
| !!! | ATGATTTGTTTTAATTTTTT+GGG | - | chr4.1:40123066-40123085 | MS.gene09091:intron | 10.0% |
| !!! | TTTATTTTTTTTCTATGATT+TGG | - | chr4.1:40123244-40123263 | MS.gene09091:intron | 10.0% |
| !! | AAAATTGTTATGAAAACTAA+AGG | - | chr4.1:40123183-40123202 | MS.gene09091:CDS | 15.0% |
| !! | TATGAATATTTAACATCTCT+TGG | + | chr4.1:40123651-40123670 | None:intergenic | 20.0% |
| ! | GAAAAATGAAGACAAAAAAG+AGG | - | chr4.1:40122991-40123010 | MS.gene09091:CDS | 25.0% |
| !! | AAGGATGTATTGATAAGATT+GGG | - | chr4.1:40123160-40123179 | MS.gene09091:CDS | 25.0% |
| !!! | TGTTTTTTAAGGTGTTGATA+CGG | - | chr4.1:40122796-40122815 | MS.gene09091:CDS | 25.0% |
| !!! | TTCGTTTTGTGTGTTTTTTA+AGG | - | chr4.1:40122785-40122804 | MS.gene09091:CDS | 25.0% |
| !!! | TTCTCATCAGATTTTTTGTT+TGG | + | chr4.1:40122971-40122990 | None:intergenic | 25.0% |
| AAACACACAAAACGAAAACA+TGG | + | chr4.1:40122781-40122800 | None:intergenic | 30.0% | |
| AAAGATAATGTGACTGTGAA+GGG | - | chr4.1:40123343-40123362 | MS.gene09091:CDS | 30.0% | |
| ATGGAAATGTGAATGTTGAA+GGG | - | chr4.1:40123605-40123624 | MS.gene09091:intron | 30.0% | |
| ATTTCCATAACCAAAACCAA+AGG | + | chr4.1:40123593-40123612 | None:intergenic | 30.0% | |
| TACCAATTTCAAAACAGAAG+TGG | + | chr4.1:40123130-40123149 | None:intergenic | 30.0% | |
| TATATAGTTCAACAACCCTT+TGG | - | chr4.1:40123574-40123593 | MS.gene09091:intron | 30.0% | |
| TATGGAAATGTGAATGTTGA+AGG | - | chr4.1:40123604-40123623 | MS.gene09091:intron | 30.0% | |
| TTCTCATCACTAAACATTTG+TGG | + | chr4.1:40123688-40123707 | None:intergenic | 30.0% | |
| TTTCCATAACCAAAACCAAA+GGG | + | chr4.1:40123592-40123611 | None:intergenic | 30.0% | |
| ! | CAAGGATGTATTGATAAGAT+TGG | - | chr4.1:40123159-40123178 | MS.gene09091:CDS | 30.0% |
| !! | CATATGATTTTGATGTGTGT+AGG | - | chr4.1:40123292-40123311 | MS.gene09091:intron | 30.0% |
| !! | TTCTTGTTGTTATCCTTCTT+GGG | + | chr4.1:40122938-40122957 | None:intergenic | 30.0% |
| !!! | CTATACATTTTTTCCGATCT+GGG | - | chr4.1:40122685-40122704 | MS.gene09091:CDS | 30.0% |
| !!! | TACCACTTCTGTTTTGAAAT+TGG | - | chr4.1:40123125-40123144 | MS.gene09091:intron | 30.0% |
| !!! | TCTATACATTTTTTCCGATC+TGG | - | chr4.1:40122684-40122703 | MS.gene09091:CDS | 30.0% |
| AAACACCTTAACAGCATCAA+AGG | - | chr4.1:40122635-40122654 | MS.gene09091:CDS | 35.0% | |
| AAATTGGTACTACACTGTCA+AGG | - | chr4.1:40123141-40123160 | MS.gene09091:CDS | 35.0% | |
| ACATTGATGAAAACCCAGAT+CGG | + | chr4.1:40122701-40122720 | None:intergenic | 35.0% | |
| AGGAGGAGAAGTTAAGATAA+TGG | - | chr4.1:40123549-40123568 | MS.gene09091:intron | 35.0% | |
| ATCACAGAAGCTTAAGAGAA+AGG | - | chr4.1:40123399-40123418 | MS.gene09091:CDS | 35.0% | |
| CAAGAAGGATAACAACAAGA+AGG | - | chr4.1:40122937-40122956 | MS.gene09091:CDS | 35.0% | |
| GAAAGATAATGTGACTGTGA+AGG | - | chr4.1:40123342-40123361 | MS.gene09091:CDS | 35.0% | |
| GATGGTAATAACAATGAAGC+AGG | - | chr4.1:40123529-40123548 | MS.gene09091:intron | 35.0% | |
| TCAAACCTTTGATGCTGTTA+AGG | + | chr4.1:40122643-40122662 | None:intergenic | 35.0% | |
| TCATCACTAAACATTTGTGG+TGG | + | chr4.1:40123685-40123704 | None:intergenic | 35.0% | |
| ! | AAGATTGTCTCTCAGTTTTG+TGG | + | chr4.1:40122873-40122892 | None:intergenic | 35.0% |
| ! | TTTGATGCTGTTAAGGTGTT+TGG | + | chr4.1:40122636-40122655 | None:intergenic | 35.0% |
| !! | AGATTGTCTCTCAGTTTTGT+GGG | + | chr4.1:40122872-40122891 | None:intergenic | 35.0% |
| !! | CTTCTTGTTGTTATCCTTCT+TGG | + | chr4.1:40122939-40122958 | None:intergenic | 35.0% |
| AGGTAAGAAGAAGAACAAGG+GGG | - | chr4.1:40123501-40123520 | MS.gene09091:CDS | 40.0% | |
| CAACCAAAGAAAGACAAGGA+AGG | - | chr4.1:40123433-40123452 | MS.gene09091:CDS | 40.0% | |
| CACATGACAATGCAAGCATT+AGG | + | chr4.1:40123712-40123731 | None:intergenic | 40.0% | |
| GAAGCTTAAGAGAAAGGTTG+AGG | - | chr4.1:40123405-40123424 | MS.gene09091:CDS | 40.0% | |
| GAGGTAAGAAGAAGAACAAG+GGG | - | chr4.1:40123500-40123519 | MS.gene09091:CDS | 40.0% | |
| GGAGGTAAGAAGAAGAACAA+GGG | - | chr4.1:40123499-40123518 | MS.gene09091:CDS | 40.0% | |
| GGTAATAACAATGAAGCAGG+AGG | - | chr4.1:40123532-40123551 | MS.gene09091:intron | 40.0% | |
| GGTTCAACCAAAGAAAGACA+AGG | - | chr4.1:40123429-40123448 | MS.gene09091:CDS | 40.0% | |
| TTGTTATCCTTCTTGGGAAG+TGG | + | chr4.1:40122932-40122951 | None:intergenic | 40.0% | |
| !! | GATTGTCTCTCAGTTTTGTG+GGG | + | chr4.1:40122871-40122890 | None:intergenic | 40.0% |
| !! | GTTCAACAACCCTTTGGTTT+TGG | - | chr4.1:40123580-40123599 | MS.gene09091:intron | 40.0% |
| !!! | CAACCCTTTGGTTTTGGTTA+TGG | - | chr4.1:40123586-40123605 | MS.gene09091:intron | 40.0% |
| AAGAAAGACAAGGAAGGTGG+TGG | - | chr4.1:40123439-40123458 | MS.gene09091:CDS | 45.0% | |
| AAGGATGGAAATGAAGGAGG+AGG | - | chr4.1:40123472-40123491 | MS.gene09091:CDS | 45.0% | |
| ATGGAAATGAAGGAGGAGGT+GGG | - | chr4.1:40123476-40123495 | MS.gene09091:CDS | 45.0% | |
| CATTTCACCACTTCCCAAGA+AGG | - | chr4.1:40122922-40122941 | MS.gene09091:CDS | 45.0% | |
| CCAAAGAAAGACAAGGAAGG+TGG | - | chr4.1:40123436-40123455 | MS.gene09091:CDS | 45.0% | |
| CCACCTTCCTTGTCTTTCTT+TGG | + | chr4.1:40123439-40123458 | None:intergenic | 45.0% | |
| GAGAAGGATGGAAATGAAGG+AGG | - | chr4.1:40123469-40123488 | MS.gene09091:CDS | 45.0% | |
| GCTTAAGAGAAAGGTTGAGG+TGG | - | chr4.1:40123408-40123427 | MS.gene09091:CDS | 45.0% | |
| GGGAGGTAAGAAGAAGAACA+AGG | - | chr4.1:40123498-40123517 | MS.gene09091:CDS | 45.0% | |
| GGTAAGAAGAAGAACAAGGG+GGG | - | chr4.1:40123502-40123521 | MS.gene09091:CDS | 45.0% | |
| GGTGAGAAGGATGGAAATGA+AGG | - | chr4.1:40123466-40123485 | MS.gene09091:CDS | 45.0% | |
| GTGAAAGCAGAGAGTGAAAC+CGG | - | chr4.1:40122818-40122837 | MS.gene09091:CDS | 45.0% | |
| ! | TGTGACTGTGAAGGGTACAA+TGG | - | chr4.1:40123351-40123370 | MS.gene09091:CDS | 45.0% |
| ! | TTTTGTGGGGTCCACATTTC+CGG | + | chr4.1:40122858-40122877 | None:intergenic | 45.0% |
| AAGAAGAAGAACAAGGGGGG+TGG | - | chr4.1:40123505-40123524 | MS.gene09091:CDS | 50.0% | |
| ACCGGAAAAGTAACCGTCAC+CGG | - | chr4.1:40122836-40122855 | MS.gene09091:CDS | 50.0% | |
| AGTAACCGTCACCGGAAATG+TGG | - | chr4.1:40122844-40122863 | MS.gene09091:CDS | 50.0% | |
| GATGGAAATGAAGGAGGAGG+TGG | - | chr4.1:40123475-40123494 | MS.gene09091:CDS | 50.0% | |
| TGGAAATGAAGGAGGAGGTG+GGG | - | chr4.1:40123477-40123496 | MS.gene09091:CDS | 50.0% | |
| ! | AAAGACAAGGAAGGTGGTGG+TGG | - | chr4.1:40123442-40123461 | MS.gene09091:CDS | 50.0% |
| !!! | TCCGGTGACGGTTACTTTTC+CGG | + | chr4.1:40122840-40122859 | None:intergenic | 50.0% |
| AAGAACAAGGGGGGTGGAGA+TGG | - | chr4.1:40123511-40123530 | MS.gene09091:intron | 55.0% | |
| GGAAATGAAGGAGGAGGTGG+GGG | - | chr4.1:40123478-40123497 | MS.gene09091:CDS | 55.0% | |
| AATGAAGGAGGAGGTGGGGG+AGG | - | chr4.1:40123481-40123500 | MS.gene09091:CDS | 60.0% | |
| GGGGTCCACATTTCCGGTGA+CGG | + | chr4.1:40122852-40122871 | None:intergenic | 60.0% | |
| !! | AGGTGGTGGTGGTGGTGAGA+AGG | - | chr4.1:40123453-40123472 | MS.gene09091:CDS | 60.0% |
| !! | GACAAGGAAGGTGGTGGTGG+TGG | - | chr4.1:40123445-40123464 | MS.gene09091:CDS | 60.0% |
| !! | GGTGGTGGTGGTGAGAAGGA+TGG | - | chr4.1:40123457-40123476 | MS.gene09091:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 40122602 | 40123732 | 40122602 | ID=MS.gene09091 |
| chr4.1 | mRNA | 40122602 | 40123732 | 40122602 | ID=MS.gene09091.t1;Parent=MS.gene09091 |
| chr4.1 | exon | 40123678 | 40123732 | 40123678 | ID=MS.gene09091.t1.exon1;Parent=MS.gene09091.t1 |
| chr4.1 | CDS | 40123678 | 40123732 | 40123678 | ID=cds.MS.gene09091.t1;Parent=MS.gene09091.t1 |
| chr4.1 | exon | 40123322 | 40123527 | 40123322 | ID=MS.gene09091.t1.exon2;Parent=MS.gene09091.t1 |
| chr4.1 | CDS | 40123322 | 40123527 | 40123322 | ID=cds.MS.gene09091.t1;Parent=MS.gene09091.t1 |
| chr4.1 | exon | 40123130 | 40123214 | 40123130 | ID=MS.gene09091.t1.exon3;Parent=MS.gene09091.t1 |
| chr4.1 | CDS | 40123130 | 40123214 | 40123130 | ID=cds.MS.gene09091.t1;Parent=MS.gene09091.t1 |
| chr4.1 | exon | 40122602 | 40123020 | 40122602 | ID=MS.gene09091.t1.exon4;Parent=MS.gene09091.t1 |
| chr4.1 | CDS | 40122602 | 40123020 | 40122602 | ID=cds.MS.gene09091.t1;Parent=MS.gene09091.t1 |
| Gene Sequence |
| Protein sequence |
