Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20223.t1 | XP_013447225.1 | 97 | 169 | 5 | 0 | 1 | 169 | 1 | 169 | 1.60E-63 | 252.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20223.t1 | O65155 | 47.9 | 167 | 84 | 1 | 3 | 169 | 2 | 165 | 1.6e-35 | 150.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20223.t1 | A0A072TUY7 | 97.0 | 169 | 5 | 0 | 1 | 169 | 1 | 169 | 1.2e-63 | 252.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene20223 | 0.829644 | 4.59E-55 | -1.69E-46 |
| MS.gene049254 | MS.gene20223 | 0.810447 | 1.15E-50 | -1.69E-46 |
| MS.gene049343 | MS.gene20223 | 0.815518 | 8.87E-52 | -1.69E-46 |
| MS.gene049350 | MS.gene20223 | 0.845679 | 3.49E-59 | -1.69E-46 |
| MS.gene049368 | MS.gene20223 | 0.803158 | 3.98E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene20223 | 0.837109 | 6.31E-57 | -1.69E-46 |
| MS.gene049807 | MS.gene20223 | 0.822994 | 1.76E-53 | -1.69E-46 |
| MS.gene049824 | MS.gene20223 | 0.822391 | 2.43E-53 | -1.69E-46 |
| MS.gene049825 | MS.gene20223 | 0.808442 | 3.09E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene20223 | 0.8113 | 7.50E-51 | -1.69E-46 |
| MS.gene05045 | MS.gene20223 | 0.811878 | 5.62E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene20223 | 0.812021 | 5.23E-51 | -1.69E-46 |
| MS.gene050901 | MS.gene20223 | 0.816828 | 4.52E-52 | -1.69E-46 |
| MS.gene051700 | MS.gene20223 | 0.814189 | 1.75E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene20223 | 0.831461 | 1.65E-55 | -1.69E-46 |
| MS.gene051720 | MS.gene20223 | 0.832447 | 9.40E-56 | -1.69E-46 |
| MS.gene051744 | MS.gene20223 | 0.839445 | 1.58E-57 | -1.69E-46 |
| MS.gene052072 | MS.gene20223 | 0.808448 | 3.08E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene20223 | 0.802568 | 5.28E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene20223 | 0.80136 | 9.34E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene20223 | 0.804457 | 2.14E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene20223 | 0.825316 | 5.01E-54 | -1.69E-46 |
| MS.gene052773 | MS.gene20223 | 0.817731 | 2.83E-52 | -1.69E-46 |
| MS.gene053079 | MS.gene20223 | 0.813587 | 2.37E-51 | -1.69E-46 |
| MS.gene053122 | MS.gene20223 | 0.830981 | 2.16E-55 | -1.69E-46 |
| MS.gene053144 | MS.gene20223 | 0.817871 | 2.63E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene20223 | 0.86554 | 5.48E-65 | -1.69E-46 |
| MS.gene053581 | MS.gene20223 | 0.818182 | 2.24E-52 | -1.69E-46 |
| MS.gene05364 | MS.gene20223 | 0.846054 | 2.76E-59 | -1.69E-46 |
| MS.gene054142 | MS.gene20223 | 0.837325 | 5.56E-57 | -1.69E-46 |
| MS.gene05423 | MS.gene20223 | 0.813096 | 3.04E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene20223 | 0.805007 | 1.64E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene20223 | 0.831044 | 2.09E-55 | -1.69E-46 |
| MS.gene054651 | MS.gene20223 | 0.835063 | 2.09E-56 | -1.69E-46 |
| MS.gene055512 | MS.gene20223 | 0.812641 | 3.83E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene20223 | 0.8453 | 4.43E-59 | -1.69E-46 |
| MS.gene055537 | MS.gene20223 | 0.810442 | 1.15E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene20223 | -0.825408 | 4.76E-54 | -1.69E-46 |
| MS.gene056005 | MS.gene20223 | 0.830391 | 3.02E-55 | -1.69E-46 |
| MS.gene056043 | MS.gene20223 | -0.810594 | 1.07E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene20223 | 0.812636 | 3.84E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene20223 | 0.818631 | 1.77E-52 | -1.69E-46 |
| MS.gene056366 | MS.gene20223 | 0.824911 | 6.24E-54 | -1.69E-46 |
| MS.gene056595 | MS.gene20223 | 0.803199 | 3.91E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene20223 | 0.80501 | 1.64E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene20223 | 0.844141 | 9.08E-59 | -1.69E-46 |
| MS.gene057208 | MS.gene20223 | 0.817722 | 2.85E-52 | -1.69E-46 |
| MS.gene057705 | MS.gene20223 | 0.808765 | 2.64E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene20223 | 0.823245 | 1.54E-53 | -1.69E-46 |
| MS.gene058852 | MS.gene20223 | 0.82601 | 3.43E-54 | -1.69E-46 |
| MS.gene05894 | MS.gene20223 | 0.838175 | 3.36E-57 | -1.69E-46 |
| MS.gene059227 | MS.gene20223 | 0.809669 | 1.69E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene20223 | 0.81985 | 9.35E-53 | -1.69E-46 |
| MS.gene05985 | MS.gene20223 | -0.82577 | 3.91E-54 | -1.69E-46 |
| MS.gene060365 | MS.gene20223 | 0.815705 | 8.06E-52 | -1.69E-46 |
| MS.gene060519 | MS.gene20223 | 0.808638 | 2.81E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene20223 | 0.813026 | 3.15E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene20223 | 0.818334 | 2.07E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene20223 | 0.812778 | 3.57E-51 | -1.69E-46 |
| MS.gene06094 | MS.gene20223 | 0.823858 | 1.10E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene20223 | 0.838488 | 2.79E-57 | -1.69E-46 |
| MS.gene061188 | MS.gene20223 | 0.802196 | 6.29E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20223.t1 | MTR_8g099650 | 95.858 | 169 | 7 | 0 | 1 | 169 | 1 | 169 | 3.25e-98 | 281 |
| MS.gene20223.t1 | MTR_8g099650 | 95.000 | 140 | 7 | 0 | 1 | 140 | 1 | 140 | 2.91e-76 | 224 |
| MS.gene20223.t1 | MTR_3g096690 | 49.296 | 71 | 35 | 1 | 95 | 165 | 37 | 106 | 1.29e-19 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20223.t1 | AT4G10920 | 52.564 | 156 | 71 | 2 | 14 | 169 | 13 | 165 | 8.70e-50 | 158 |
| MS.gene20223.t1 | AT4G10920 | 52.564 | 156 | 71 | 2 | 14 | 169 | 13 | 165 | 8.70e-50 | 158 |
| MS.gene20223.t1 | AT5G09250 | 45.588 | 68 | 37 | 0 | 95 | 162 | 36 | 103 | 1.57e-19 | 79.3 |
| MS.gene20223.t1 | AT5G09250 | 46.032 | 63 | 34 | 0 | 100 | 162 | 44 | 106 | 2.74e-16 | 70.9 |
| MS.gene20223.t1 | AT4G00980 | 32.298 | 161 | 98 | 3 | 9 | 169 | 19 | 168 | 1.64e-15 | 73.6 |
| MS.gene20223.t1 | AT5G09250 | 35.632 | 87 | 54 | 1 | 63 | 149 | 6 | 90 | 7.38e-15 | 67.4 |
| MS.gene20223.t1 | AT5G09240 | 42.424 | 66 | 36 | 1 | 99 | 162 | 39 | 104 | 4.54e-13 | 62.4 |
| MS.gene20223.t1 | AT5G09250 | 47.826 | 46 | 24 | 0 | 95 | 140 | 36 | 81 | 3.48e-12 | 59.7 |
| MS.gene20223.t1 | AT5G09250 | 47.826 | 46 | 24 | 0 | 95 | 140 | 36 | 81 | 3.48e-12 | 59.7 |
Find 33 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGATTCTTCCTTCGGTTT+CGG | 0.291880 | 4.4:+4658777 | None:intergenic |
| AGAACAAGCCATTCAGAAAA+AGG | 0.298415 | 4.4:-4655970 | MS.gene20223:CDS |
| TGAGGCTTGCTTTCGAATCT+TGG | 0.308290 | 4.4:+4658702 | None:intergenic |
| CGTCCATGTTTGATTCTTGA+AGG | 0.351225 | 4.4:+4658737 | None:intergenic |
| AAAGAGAAAGGTGACAATTC+AGG | 0.366183 | 4.4:-4658350 | MS.gene20223:CDS |
| TGTTTCTTCGATTCTTCCTT+CGG | 0.372782 | 4.4:+4658771 | None:intergenic |
| AAAGCAAGCCTCAAATGAAT+TGG | 0.387647 | 4.4:-4658692 | MS.gene20223:CDS |
| AGCACTGTTTATGATGATTC+CGG | 0.391789 | 4.4:-4658517 | MS.gene20223:CDS |
| CTTGGTATAAAACTCTCTAA+TGG | 0.394017 | 4.4:+4658303 | None:intergenic |
| AAAGAACTTCCTTCTTCTAA+AGG | 0.401625 | 4.4:-4658274 | MS.gene20223:intron |
| TGAATGGCTTGTTCTATGTC+AGG | 0.401909 | 4.4:+4655978 | None:intergenic |
| TTGCTTTCGAATCTTGGATT+CGG | 0.412374 | 4.4:+4658708 | None:intergenic |
| AGGAAGTTCTTTGCCATCCT+TGG | 0.414306 | 4.4:+4658285 | None:intergenic |
| CTTTGAAGGGAGGCTGAGAT+AGG | 0.417924 | 4.4:+4658662 | None:intergenic |
| TTGCTTGACGAAGGCTTTGA+AGG | 0.429051 | 4.4:+4658648 | None:intergenic |
| AGAAGAAGAAGAGAAACAAC+AGG | 0.454315 | 4.4:-4658566 | MS.gene20223:CDS |
| ACAACTTTACCTTTAGAAGA+AGG | 0.476393 | 4.4:+4658265 | None:intergenic |
| GCAGCAAGAACAACAGAAAG+AGG | 0.479297 | 4.4:-4658599 | MS.gene20223:CDS |
| GTTAAGATCCAATTCATTTG+AGG | 0.479566 | 4.4:+4658684 | None:intergenic |
| GTGACAATTCAGGATTTCAA+AGG | 0.497487 | 4.4:-4658340 | MS.gene20223:CDS |
| CAAGAACAACAGAAAGAGGA+AGG | 0.526477 | 4.4:-4658595 | MS.gene20223:CDS |
| TGACAATTCAGGATTTCAAA+GGG | 0.528976 | 4.4:-4658339 | MS.gene20223:CDS |
| TTCAGGAATAAGTTTGACTC+AGG | 0.531614 | 4.4:-4656030 | MS.gene20223:intron |
| TTCGATGATTTGCTTGACGA+AGG | 0.545920 | 4.4:+4658639 | None:intergenic |
| TGCTTGACGAAGGCTTTGAA+GGG | 0.552385 | 4.4:+4658649 | None:intergenic |
| ATGGATGACGCCGAAACCGA+AGG | 0.555360 | 4.4:-4658787 | MS.gene20223:CDS |
| GAAACAACAGGTTAAACAAG+AGG | 0.566821 | 4.4:-4658554 | MS.gene20223:CDS |
| TTGACGAAGGCTTTGAAGGG+AGG | 0.568942 | 4.4:+4658652 | None:intergenic |
| CTCGCAGATGACTAGATCAC+CGG | 0.601997 | 4.4:+4658498 | None:intergenic |
| TAAGTTTGACTCAGGAGCAG+TGG | 0.602755 | 4.4:-4656022 | MS.gene20223:CDS |
| AAACAACAGGTTAAACAAGA+GGG | 0.617440 | 4.4:-4658553 | MS.gene20223:CDS |
| GATCCTTCAAGAATCAAACA+TGG | 0.657064 | 4.4:-4658740 | MS.gene20223:CDS |
| CGGTGATCTAGTCATCTGCG+AGG | 0.722262 | 4.4:-4658497 | MS.gene20223:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATTTGAAAATGATAA+AGG | - | chr4.4:4657439-4657458 | MS.gene20223:intron | 10.0% |
| !!! | TATTTTTTTTTACTTTTCAT+TGG | - | chr4.4:4658056-4658075 | MS.gene20223:intron | 10.0% |
| !! | AATGTTTCTTAGATATTAAA+TGG | + | chr4.4:4657904-4657923 | None:intergenic | 15.0% |
| !! | CATACAAAAAAAAAAAATCA+TGG | + | chr4.4:4657347-4657366 | None:intergenic | 15.0% |
| !! | GTCATATTATATAAAAGAAA+TGG | + | chr4.4:4656877-4656896 | None:intergenic | 15.0% |
| !! | TCATATATAATTTAGCAAAT+AGG | - | chr4.4:4658335-4658354 | MS.gene20223:CDS | 15.0% |
| !! | TTAATATCTAAGAAACATTA+GGG | - | chr4.4:4657905-4657924 | MS.gene20223:intron | 15.0% |
| !! | TTCTACCTATTTATAATAAA+AGG | + | chr4.4:4657416-4657435 | None:intergenic | 15.0% |
| !! | TTTAATATCTAAGAAACATT+AGG | - | chr4.4:4657904-4657923 | MS.gene20223:intron | 15.0% |
| !!! | AAACACCTTTTATTATAAAT+AGG | - | chr4.4:4657408-4657427 | MS.gene20223:intron | 15.0% |
| !!! | AAGTATATCTACTTTTAATA+TGG | - | chr4.4:4657695-4657714 | MS.gene20223:intron | 15.0% |
| !! | AAAGAAAAAAAACATGAGTA+TGG | - | chr4.4:4657586-4657605 | MS.gene20223:intron | 20.0% |
| !! | AATTTATACAGTTTGAACTT+TGG | - | chr4.4:4657826-4657845 | MS.gene20223:intron | 20.0% |
| !! | AGACTAATTGATAGAAATTA+TGG | + | chr4.4:4656540-4656559 | None:intergenic | 20.0% |
| !! | ATTTCGATTCAAATGTTTAT+CGG | - | chr4.4:4658511-4658530 | MS.gene20223:CDS | 20.0% |
| !! | GAAACACAAAAATTAGAATT+TGG | + | chr4.4:4658696-4658715 | None:intergenic | 20.0% |
| !! | TGTGCAAGTTAATAATAATT+TGG | + | chr4.4:4656744-4656763 | None:intergenic | 20.0% |
| !!! | AATTCTAATTTTTGTGTTTC+AGG | - | chr4.4:4658696-4658715 | MS.gene20223:CDS | 20.0% |
| !!! | ATCTACTTTTAATATGGTAT+TGG | - | chr4.4:4657701-4657720 | MS.gene20223:intron | 20.0% |
| !!! | ATTTTAATGCCAAACTTAAA+AGG | + | chr4.4:4658185-4658204 | None:intergenic | 20.0% |
| !!! | GCTAATTAGCTTAAATTTAA+CGG | + | chr4.4:4656606-4656625 | None:intergenic | 20.0% |
| !!! | GTTTTATCTATAACTTTTCA+CGG | + | chr4.4:4658480-4658499 | None:intergenic | 20.0% |
| !!! | TAAGTTCTAACTAGTAAAAT+TGG | + | chr4.4:4658111-4658130 | None:intergenic | 20.0% |
| ! | AATGCAGTTTCGAATAAATA+GGG | + | chr4.4:4657077-4657096 | None:intergenic | 25.0% |
| ! | ACTACTCATACTATCATATA+GGG | + | chr4.4:4658264-4658283 | None:intergenic | 25.0% |
| ! | AGATTTCATCTTTCATTCTA+AGG | + | chr4.4:4656721-4656740 | None:intergenic | 25.0% |
| ! | ATAGTTACGTTCTATAATTG+AGG | - | chr4.4:4658663-4658682 | MS.gene20223:CDS | 25.0% |
| ! | ATTAGGGTTCAAAATAAGTT+GGG | - | chr4.4:4657921-4657940 | MS.gene20223:intron | 25.0% |
| ! | ATTTCTTGACAATAGAACTT+AGG | + | chr4.4:4656776-4656795 | None:intergenic | 25.0% |
| ! | ATTTGAAAATGATAAAGGCA+TGG | - | chr4.4:4657444-4657463 | MS.gene20223:intron | 25.0% |
| ! | CCAAAATAATAATGTTAACC+AGG | + | chr4.4:4656352-4656371 | None:intergenic | 25.0% |
| ! | GAGAGTAAAAAATTACGAAA+CGG | + | chr4.4:4656273-4656292 | None:intergenic | 25.0% |
| ! | TAACGATGAAATCAATTCAT+GGG | - | chr4.4:4656314-4656333 | MS.gene20223:intron | 25.0% |
| ! | TACTACTCATACTATCATAT+AGG | + | chr4.4:4658265-4658284 | None:intergenic | 25.0% |
| ! | TAGTTACGTTCTATAATTGA+GGG | - | chr4.4:4658664-4658683 | MS.gene20223:CDS | 25.0% |
| ! | TGAACAGAGTTAAGTAATAT+TGG | + | chr4.4:4657957-4657976 | None:intergenic | 25.0% |
| ! | TTAACGATGAAATCAATTCA+TGG | - | chr4.4:4656313-4656332 | MS.gene20223:intron | 25.0% |
| ! | TTGTCAAGAAATATCAAGAT+TGG | - | chr4.4:4656784-4656803 | MS.gene20223:intron | 25.0% |
| !! | ACGTAACTATGTGTTTTATA+AGG | + | chr4.4:4658653-4658672 | None:intergenic | 25.0% |
| !! | AGTAGATATACTTGTGATTT+TGG | + | chr4.4:4657688-4657707 | None:intergenic | 25.0% |
| !! | ATTGGATTAGAAACAGTTAA+AGG | - | chr4.4:4656802-4656821 | MS.gene20223:intron | 25.0% |
| !! | CCTGGTTAACATTATTATTT+TGG | - | chr4.4:4656349-4656368 | MS.gene20223:intron | 25.0% |
| !! | GCTTATATGAACCTTTAAAA+AGG | + | chr4.4:4657278-4657297 | None:intergenic | 25.0% |
| !!! | ATAATATGACATTGATTCTC+AGG | - | chr4.4:4656887-4656906 | MS.gene20223:intron | 25.0% |
| AAACAACAGGTTAAACAAGA+GGG | - | chr4.4:4656190-4656209 | MS.gene20223:intron | 30.0% | |
| AAAGAACTTCCTTCTTCTAA+AGG | - | chr4.4:4656469-4656488 | MS.gene20223:intron | 30.0% | |
| AAGTTCTTGAGTCTCTAATT+TGG | + | chr4.4:4657502-4657521 | None:intergenic | 30.0% | |
| ACCAAGAAATTCAGAAAAGA+TGG | - | chr4.4:4658365-4658384 | MS.gene20223:intron | 30.0% | |
| AGAACAATAGAGAGAAGAAA+GGG | - | chr4.4:4656998-4657017 | MS.gene20223:intron | 30.0% | |
| ATAACATGACTACATGAGTA+TGG | - | chr4.4:4657553-4657572 | MS.gene20223:intron | 30.0% | |
| ATATTAAATGGAGCACAACA+AGG | + | chr4.4:4657892-4657911 | None:intergenic | 30.0% | |
| CATGATAAAAATTAGTCCAC+CGG | - | chr4.4:4658437-4658456 | MS.gene20223:intron | 30.0% | |
| CATTAGGGTTCAAAATAAGT+TGG | - | chr4.4:4657920-4657939 | MS.gene20223:intron | 30.0% | |
| CTACTCATACTATCATATAG+GGG | + | chr4.4:4658263-4658282 | None:intergenic | 30.0% | |
| CTCTTAATTAATACTCGATG+CGG | - | chr4.4:4657186-4657205 | MS.gene20223:intron | 30.0% | |
| CTTGGTATAAAACTCTCTAA+TGG | + | chr4.4:4656443-4656462 | None:intergenic | 30.0% | |
| GAAATCAATTCATGGGAAAA+GGG | - | chr4.4:4656321-4656340 | MS.gene20223:intron | 30.0% | |
| GAATGCAGTTTCGAATAAAT+AGG | + | chr4.4:4657078-4657097 | None:intergenic | 30.0% | |
| GACACGATGATCTATATATT+TGG | - | chr4.4:4657527-4657546 | MS.gene20223:intron | 30.0% | |
| GCTTATTTAGTGCTAAATTC+TGG | - | chr4.4:4658221-4658240 | MS.gene20223:intron | 30.0% | |
| GGAAACATCTTATGAACTTA+TGG | + | chr4.4:4656519-4656538 | None:intergenic | 30.0% | |
| GTTAAGATCCAATTCATTTG+AGG | + | chr4.4:4656062-4656081 | None:intergenic | 30.0% | |
| GTTAAGTAATATTGGCAACA+AGG | + | chr4.4:4657949-4657968 | None:intergenic | 30.0% | |
| TAGTTAGAACTTAGATGTCT+CGG | - | chr4.4:4658118-4658137 | MS.gene20223:intron | 30.0% | |
| TATTAAATGGAGCACAACAA+GGG | + | chr4.4:4657891-4657910 | None:intergenic | 30.0% | |
| TCAGATTTGTCATTGTTGAT+AGG | + | chr4.4:4657320-4657339 | None:intergenic | 30.0% | |
| TCTTAAAAGCTAGCTATCAA+GGG | - | chr4.4:4657150-4657169 | MS.gene20223:intron | 30.0% | |
| TCTTAATTAATACTCGATGC+GGG | - | chr4.4:4657187-4657206 | MS.gene20223:intron | 30.0% | |
| TGAAATCAATTCATGGGAAA+AGG | - | chr4.4:4656320-4656339 | MS.gene20223:intron | 30.0% | |
| TGAATCGAAATCTCTGTTAA+TGG | + | chr4.4:4658502-4658521 | None:intergenic | 30.0% | |
| TGACAATTCAGGATTTCAAA+GGG | - | chr4.4:4656404-4656423 | MS.gene20223:intron | 30.0% | |
| TTAAAAGGAAGTTCTCAACT+GGG | + | chr4.4:4658170-4658189 | None:intergenic | 30.0% | |
| TTAGGGTTCAAAATAAGTTG+GGG | - | chr4.4:4657922-4657941 | MS.gene20223:intron | 30.0% | |
| TTATTCGAAACTGCATTCTA+AGG | - | chr4.4:4657080-4657099 | MS.gene20223:intron | 30.0% | |
| ! | AAAATGATAAAGGCATGGAA+TGG | - | chr4.4:4657449-4657468 | MS.gene20223:intron | 30.0% |
| ! | ACAACTTTACCTTTAGAAGA+AGG | + | chr4.4:4656481-4656500 | None:intergenic | 30.0% |
| ! | ACCATCTTTTCTGAATTTCT+TGG | + | chr4.4:4658369-4658388 | None:intergenic | 30.0% |
| ! | ATCATAAACAGTGCTTTTGT+TGG | + | chr4.4:4656221-4656240 | None:intergenic | 30.0% |
| ! | GAATTGATTTCATCGTTAAC+CGG | + | chr4.4:4656312-4656331 | None:intergenic | 30.0% |
| ! | TGAACCTTTAAAAAGGAACA+CGG | + | chr4.4:4657271-4657290 | None:intergenic | 30.0% |
| !! | CATTAGAGAGTTTTATACCA+AGG | - | chr4.4:4656441-4656460 | MS.gene20223:intron | 30.0% |
| !!! | AAGATGGTTAGTGTTGTTTT+AGG | - | chr4.4:4658381-4658400 | MS.gene20223:intron | 30.0% |
| !!! | TGAGAACTTCCTTTTAAGTT+TGG | - | chr4.4:4658173-4658192 | MS.gene20223:intron | 30.0% |
| !!! | TTTTAATATGGTATTGGCCT+TGG | - | chr4.4:4657707-4657726 | MS.gene20223:intron | 30.0% |
| AAAGAGAAAGGTGACAATTC+AGG | - | chr4.4:4656393-4656412 | MS.gene20223:intron | 35.0% | |
| AAAGCAAGCCTCAAATGAAT+TGG | - | chr4.4:4656051-4656070 | MS.gene20223:intron | 35.0% | |
| AAATAGGGAAGCTATGCAAT+TGG | + | chr4.4:4657062-4657081 | None:intergenic | 35.0% | |
| AAATTTAACGGCCAAGGATA+AGG | + | chr4.4:4656594-4656613 | None:intergenic | 35.0% | |
| AAGCTAATTAGCAAAAAGCG+AGG | - | chr4.4:4656614-4656633 | MS.gene20223:intron | 35.0% | |
| AATTTAACGGCCAAGGATAA+GGG | + | chr4.4:4656593-4656612 | None:intergenic | 35.0% | |
| AGAACAAGCCATTCAGAAAA+AGG | - | chr4.4:4658773-4658792 | MS.gene20223:CDS | 35.0% | |
| AGAAGAAGAAGAGAAACAAC+AGG | - | chr4.4:4656177-4656196 | MS.gene20223:intron | 35.0% | |
| AGCACTGTTTATGATGATTC+CGG | - | chr4.4:4656226-4656245 | MS.gene20223:intron | 35.0% | |
| ATAAAAATTAGTCCACCGGT+TGG | - | chr4.4:4658441-4658460 | MS.gene20223:intron | 35.0% | |
| CCACCTATAGTATATAACCA+AGG | + | chr4.4:4657727-4657746 | None:intergenic | 35.0% | |
| CCTTGGTTATATACTATAGG+TGG | - | chr4.4:4657724-4657743 | MS.gene20223:intron | 35.0% | |
| CGCATCGAGTATTAATTAAG+AGG | + | chr4.4:4657188-4657207 | None:intergenic | 35.0% | |
| CTCTTAAAAGCTAGCTATCA+AGG | - | chr4.4:4657149-4657168 | MS.gene20223:intron | 35.0% | |
| CTTAAAAGCTAGCTATCAAG+GGG | - | chr4.4:4657151-4657170 | MS.gene20223:intron | 35.0% | |
| CTTAAAAGGAAGTTCTCAAC+TGG | + | chr4.4:4658171-4658190 | None:intergenic | 35.0% | |
| GAAACAACAGGTTAAACAAG+AGG | - | chr4.4:4656189-4656208 | MS.gene20223:intron | 35.0% | |
| GAGAACAATAGAGAGAAGAA+AGG | - | chr4.4:4656997-4657016 | MS.gene20223:intron | 35.0% | |
| GATCCTTCAAGAATCAAACA+TGG | - | chr4.4:4656003-4656022 | MS.gene20223:CDS | 35.0% | |
| GTGACAATTCAGGATTTCAA+AGG | - | chr4.4:4656403-4656422 | MS.gene20223:intron | 35.0% | |
| TAGCATTTCTCATGGATGTT+TGG | - | chr4.4:4657784-4657803 | MS.gene20223:intron | 35.0% | |
| TAGCTTAAATTTAACGGCCA+AGG | + | chr4.4:4656600-4656619 | None:intergenic | 35.0% | |
| TCAGCTTGGAAAAAAGAGAA+AGG | - | chr4.4:4656381-4656400 | MS.gene20223:intron | 35.0% | |
| TCATACTATCATATAGGGGA+AGG | + | chr4.4:4658259-4658278 | None:intergenic | 35.0% | |
| TCGGATTAAGGATGTTGATA+GGG | + | chr4.4:4657234-4657253 | None:intergenic | 35.0% | |
| TCTCACTTTAGCATTTCTCA+TGG | - | chr4.4:4657776-4657795 | MS.gene20223:intron | 35.0% | |
| TGGAATGTGACAGTTTACAA+TGG | - | chr4.4:4657028-4657047 | MS.gene20223:intron | 35.0% | |
| TGTTTCTTCGATTCTTCCTT+CGG | + | chr4.4:4655975-4655994 | None:intergenic | 35.0% | |
| TTCAGGAATAAGTTTGACTC+AGG | - | chr4.4:4658713-4658732 | MS.gene20223:CDS | 35.0% | |
| TTCGGATTAAGGATGTTGAT+AGG | + | chr4.4:4657235-4657254 | None:intergenic | 35.0% | |
| TTGCTTTCGAATCTTGGATT+CGG | + | chr4.4:4656038-4656057 | None:intergenic | 35.0% | |
| ! | CAAACCGTGTTCCTTTTTAA+AGG | - | chr4.4:4657264-4657283 | MS.gene20223:intron | 35.0% |
| ! | CTGGCTTATTTCTCACAATA+GGG | - | chr4.4:4657120-4657139 | MS.gene20223:intron | 35.0% |
| ! | TAGGGTTCAAAATAAGTTGG+GGG | - | chr4.4:4657923-4657942 | MS.gene20223:intron | 35.0% |
| ! | TGGCCTTGGTTATATACTAT+AGG | - | chr4.4:4657721-4657740 | MS.gene20223:intron | 35.0% |
| !! | AGAGAGTTTTATACCAAGGA+TGG | - | chr4.4:4656445-4656464 | MS.gene20223:intron | 35.0% |
| !! | TGTAGAAGCATTTCGGATTA+AGG | + | chr4.4:4657246-4657265 | None:intergenic | 35.0% |
| !!! | ATGGTTAGTGTTGTTTTAGG+TGG | - | chr4.4:4658384-4658403 | MS.gene20223:intron | 35.0% |
| !!! | TTTGGTTTTGCATTTCAGCT+TGG | - | chr4.4:4656367-4656386 | MS.gene20223:intron | 35.0% |
| AGAGAAGAAAGGGATTTGAG+TGG | - | chr4.4:4657008-4657027 | MS.gene20223:intron | 40.0% | |
| ATTAGCAAAAAGCGAGGCAA+CGG | - | chr4.4:4656620-4656639 | MS.gene20223:intron | 40.0% | |
| CAAGAACAACAGAAAGAGGA+AGG | - | chr4.4:4656148-4656167 | MS.gene20223:intron | 40.0% | |
| CGTCCATGTTTGATTCTTGA+AGG | + | chr4.4:4656009-4656028 | None:intergenic | 40.0% | |
| GAGCTTTCATGATTCGTGTA+AGG | + | chr4.4:4657999-4658018 | None:intergenic | 40.0% | |
| GCCAAATTGATCTGCTTTGT+TGG | - | chr4.4:4658303-4658322 | MS.gene20223:CDS | 40.0% | |
| GCCAACAAAGCAGATCAATT+TGG | + | chr4.4:4658307-4658326 | None:intergenic | 40.0% | |
| GTAGTTATCGTTTCTGTCTG+AGG | - | chr4.4:4657635-4657654 | MS.gene20223:intron | 40.0% | |
| TCCAAACAAACCCTTATCCT+TGG | - | chr4.4:4656580-4656599 | MS.gene20223:intron | 40.0% | |
| TTCGATTCTTCCTTCGGTTT+CGG | + | chr4.4:4655969-4655988 | None:intergenic | 40.0% | |
| ! | ACGTGACTCCTTTTTCTGAA+TGG | + | chr4.4:4658784-4658803 | None:intergenic | 40.0% |
| ! | GCTGGCTTATTTCTCACAAT+AGG | - | chr4.4:4657119-4657138 | MS.gene20223:intron | 40.0% |
| ! | GTCAGGCACAATTTTCTTGA+AGG | + | chr4.4:4658751-4658770 | None:intergenic | 40.0% |
| ! | TTAAGGATGTTGATAGGGAC+CGG | + | chr4.4:4657229-4657248 | None:intergenic | 40.0% |
| !! | CACGGTTTGTAGAAGCATTT+CGG | + | chr4.4:4657253-4657272 | None:intergenic | 40.0% |
| !! | TGAATGGCTTGTTCTATGTC+AGG | + | chr4.4:4658768-4658787 | None:intergenic | 40.0% |
| !! | TTCGATGATTTGCTTGACGA+AGG | + | chr4.4:4656107-4656126 | None:intergenic | 40.0% |
| AGGAAGTTCTTTGCCATCCT+TGG | + | chr4.4:4656461-4656480 | None:intergenic | 45.0% | |
| AGGAGACATCTGATGGAAAC+TGG | - | chr4.4:4656907-4656926 | MS.gene20223:intron | 45.0% | |
| ATACAACCAACTCCGTGTAG+TGG | - | chr4.4:4658585-4658604 | MS.gene20223:CDS | 45.0% | |
| CATGGGAAAAGGGTTATTCC+TGG | - | chr4.4:4656331-4656350 | MS.gene20223:intron | 45.0% | |
| CTAAGCTTTCTCCCACTACA+CGG | + | chr4.4:4658600-4658619 | None:intergenic | 45.0% | |
| GATTCTCAGGAGACATCTGA+TGG | - | chr4.4:4656900-4656919 | MS.gene20223:intron | 45.0% | |
| GCAGCAAGAACAACAGAAAG+AGG | - | chr4.4:4656144-4656163 | MS.gene20223:intron | 45.0% | |
| GCTATCAAGGGGTAAGAAAC+AGG | - | chr4.4:4657162-4657181 | MS.gene20223:intron | 45.0% | |
| GCTCAAGAGTCATGAGAAGA+AGG | - | chr4.4:4657372-4657391 | MS.gene20223:intron | 45.0% | |
| TAAGTTTGACTCAGGAGCAG+TGG | - | chr4.4:4658721-4658740 | MS.gene20223:CDS | 45.0% | |
| TACAACCAACTCCGTGTAGT+GGG | - | chr4.4:4658586-4658605 | MS.gene20223:CDS | 45.0% | |
| TTGATAGGGACCGGTATTGT+GGG | + | chr4.4:4657220-4657239 | None:intergenic | 45.0% | |
| ! | GCCAAGGATAAGGGTTTGTT+TGG | + | chr4.4:4656584-4656603 | None:intergenic | 45.0% |
| ! | TGAGGCTTGCTTTCGAATCT+TGG | + | chr4.4:4656044-4656063 | None:intergenic | 45.0% |
| ! | TTGCTTGACGAAGGCTTTGA+AGG | + | chr4.4:4656098-4656117 | None:intergenic | 45.0% |
| !! | TGCTTGACGAAGGCTTTGAA+GGG | + | chr4.4:4656097-4656116 | None:intergenic | 45.0% |
| AGATGTCTCGGCGTTGCAAT+TGG | - | chr4.4:4658130-4658149 | MS.gene20223:intron | 50.0% | |
| AGGGAAGCTATGCAATTGGC+AGG | + | chr4.4:4657058-4657077 | None:intergenic | 50.0% | |
| CTCGCAGATGACTAGATCAC+CGG | + | chr4.4:4656248-4656267 | None:intergenic | 50.0% | |
| GGCACAACTATGACACAAGC+TGG | - | chr4.4:4657101-4657120 | MS.gene20223:intron | 50.0% | |
| GGGAAGCTATGCAATTGGCA+GGG | + | chr4.4:4657057-4657076 | None:intergenic | 50.0% | |
| GGTATCCACCTAACTCCAAC+CGG | + | chr4.4:4658459-4658478 | None:intergenic | 50.0% | |
| TAGGTGGTCTGTGCATACAG+CGG | - | chr4.4:4658400-4658419 | MS.gene20223:intron | 50.0% | |
| TGATAGGGACCGGTATTGTG+GGG | + | chr4.4:4657219-4657238 | None:intergenic | 50.0% | |
| TTTCTCCCACTACACGGAGT+TGG | + | chr4.4:4658594-4658613 | None:intergenic | 50.0% | |
| ! | CTTTGAAGGGAGGCTGAGAT+AGG | + | chr4.4:4656084-4656103 | None:intergenic | 50.0% |
| ! | GTTGATAGGGACCGGTATTG+TGG | + | chr4.4:4657221-4657240 | None:intergenic | 50.0% |
| ! | TTAGTCCACCGGTTGGAGTT+AGG | - | chr4.4:4658448-4658467 | MS.gene20223:intron | 50.0% |
| !! | TTGACGAAGGCTTTGAAGGG+AGG | + | chr4.4:4656094-4656113 | None:intergenic | 50.0% |
| ATCCACCTAACTCCAACCGG+TGG | + | chr4.4:4658456-4658475 | None:intergenic | 55.0% | |
| ATGGATGACGCCGAAACCGA+AGG | - | chr4.4:4655956-4655975 | MS.gene20223:CDS | 55.0% | |
| CGGTGATCTAGTCATCTGCG+AGG | - | chr4.4:4656246-4656265 | MS.gene20223:intron | 55.0% | |
| CTCTTTCGCACGCACTTCAC+CGG | - | chr4.4:4656290-4656309 | MS.gene20223:intron | 55.0% | |
| GGGACTTGACCCCACAATAC+CGG | - | chr4.4:4657207-4657226 | MS.gene20223:intron | 55.0% | |
| ! | GTCCACCGGTTGGAGTTAGG+TGG | - | chr4.4:4658451-4658470 | MS.gene20223:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 4655956 | 4658809 | 4655956 | ID=MS.gene20223 |
| chr4.4 | mRNA | 4655956 | 4658809 | 4655956 | ID=MS.gene20223.t1;Parent=MS.gene20223 |
| chr4.4 | exon | 4658498 | 4658809 | 4658498 | ID=MS.gene20223.t1.exon1;Parent=MS.gene20223.t1 |
| chr4.4 | CDS | 4658498 | 4658809 | 4658498 | ID=cds.MS.gene20223.t1;Parent=MS.gene20223.t1 |
| chr4.4 | exon | 4658275 | 4658380 | 4658275 | ID=MS.gene20223.t1.exon2;Parent=MS.gene20223.t1 |
| chr4.4 | CDS | 4658275 | 4658380 | 4658275 | ID=cds.MS.gene20223.t1;Parent=MS.gene20223.t1 |
| chr4.4 | exon | 4655956 | 4656047 | 4655956 | ID=MS.gene20223.t1.exon3;Parent=MS.gene20223.t1 |
| chr4.4 | CDS | 4655956 | 4656047 | 4655956 | ID=cds.MS.gene20223.t1;Parent=MS.gene20223.t1 |
| Gene Sequence |
| Protein sequence |
