AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene25215


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25215.t1 MTR_7g106640 93.857 586 35 1 9 593 47 632 0.0 1073
MS.gene25215.t1 MTR_7g106640 94.178 584 33 1 11 593 49 632 0.0 1070
MS.gene25215.t1 MTR_7g106640 93.645 535 33 1 60 593 1 535 0.0 969
MS.gene25215.t1 MTR_7g106640 93.978 465 27 1 130 593 1 465 0.0 827
MS.gene25215.t1 MTR_1g055315 61.219 361 113 6 12 353 48 400 9.91e-145 432
MS.gene25215.t1 MTR_1g055315 37.931 116 64 3 468 582 371 479 7.17e-12 68.6
MS.gene25215.t1 MTR_1g055315 60.641 343 109 5 29 353 1 335 3.12e-137 410
MS.gene25215.t1 MTR_1g055315 37.931 116 64 3 468 582 306 414 6.25e-12 68.6
MS.gene25215.t1 MTR_2g066850 70.614 228 44 4 85 311 732 937 6.12e-89 298
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25215.t1 AT5G06440 55.639 266 114 2 13 277 42 304 5.69e-104 323
MS.gene25215.t1 AT5G06440 55.639 266 114 2 13 277 42 304 5.69e-104 323
MS.gene25215.t1 AT5G06440 53.480 273 116 3 13 277 42 311 1.31e-99 311
MS.gene25215.t1 AT5G06440 59.565 230 88 2 49 277 5 230 1.08e-98 306
MS.gene25215.t1 AT5G06440 59.817 219 83 2 60 277 1 215 1.01e-94 296
MS.gene25215.t1 AT5G06440 56.118 237 98 3 13 247 42 274 1.32e-91 285
MS.gene25215.t1 AT3G11720 46.043 278 126 5 16 288 46 304 5.72e-82 267
MS.gene25215.t1 AT3G11720 46.043 278 126 5 16 288 46 304 5.72e-82 267
MS.gene25215.t1 AT3G11720 46.043 278 126 5 16 288 100 358 4.16e-81 266
MS.gene25215.t1 AT3G11720 49.130 230 97 4 60 288 1 211 4.53e-74 244

Find 95 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTAATTATTTGCATTT+TGG 0.186628 7.3:+7508340 None:intergenic
ATCTTCAATATTTGCTTCTA+TGG 0.193108 7.3:+7507879 None:intergenic
ATTCTCACCATTTCTTATAA+AGG 0.226461 7.3:+7509848 None:intergenic
CGACAATCTCACAATTCTTT+TGG 0.239123 7.3:+7507920 None:intergenic
TTGTAGGGCAATAGGGAATT+TGG 0.245211 7.3:-7508762 MS.gene25215:intron
TTCATTTCAAGGCAACTTAT+TGG 0.246795 7.3:-7508701 MS.gene25215:CDS
GTTAGACTTACCTGAAGTTT+TGG 0.259196 7.3:+7507515 None:intergenic
GCCTTGAAATGAAATTTATA+AGG 0.259631 7.3:+7508711 None:intergenic
TTCAATAAGCAATGTATTAT+AGG 0.275063 7.3:+7510042 None:intergenic
CTCACAACACCCTTTGCTTC+AGG 0.277935 7.3:+7509110 None:intergenic
TATGTTGCTGCTTGGTCCTT+TGG 0.311330 7.3:+7507567 None:intergenic
TTCTCACCATTTCTTATAAA+GGG 0.318688 7.3:+7509849 None:intergenic
CATCTGAAAGAAGTTATTTC+CGG 0.324574 7.3:-7509049 MS.gene25215:intron
GATGTATTGCTTTCCTCAAA+TGG 0.327557 7.3:+7508102 None:intergenic
GTGCTATTTGTTCTCCAGTC+TGG 0.329723 7.3:+7509522 None:intergenic
CCCTTATAAATTTCATTTCA+AGG 0.335848 7.3:-7508712 MS.gene25215:CDS
GAGAACAAATAGCACTAATA+AGG 0.341307 7.3:-7509514 MS.gene25215:intron
CTTATTGAAGGCTATGTAGA+TGG 0.348985 7.3:-7510028 MS.gene25215:CDS
GAGATCGCAGAAGCAGATAT+TGG 0.371598 7.3:-7508027 MS.gene25215:CDS
AAAATTAATGAGACTATTGA+TGG 0.372387 7.3:-7509152 MS.gene25215:CDS
ATCTCGAAATCCAAAACTTC+AGG 0.378941 7.3:-7507525 None:intergenic
AATCATCCCTTTATAAGAAA+TGG 0.382734 7.3:-7509855 MS.gene25215:intron
TCAATAAGCAATGTATTATA+GGG 0.386854 7.3:+7510043 None:intergenic
TATAATACATTGCTTATTGA+AGG 0.397643 7.3:-7510040 MS.gene25215:CDS
TATCAGCTCAAATGTAAAAC+AGG 0.404649 7.3:-7507761 MS.gene25215:CDS
ATTTCATCAGTTCAGAAATA+CGG 0.409322 7.3:-7507715 MS.gene25215:CDS
CCTTGAAATGAAATTTATAA+GGG 0.411284 7.3:+7508712 None:intergenic
TTAGTCAAAGTAAGCAAGAT+TGG 0.417597 7.3:-7508395 MS.gene25215:CDS
CTTCTTTCGACAGTTAAAAC+AGG 0.422510 7.3:-7510113 MS.gene25215:intron
ATTGAATATGATAATATAAG+AGG 0.428070 7.3:-7507811 MS.gene25215:CDS
TTAGCACATCAAGGACTGAT+TGG 0.429890 7.3:-7510336 MS.gene25215:CDS
CTCCATGGCCACTGTCTACA+AGG 0.436068 7.3:-7509375 MS.gene25215:CDS
TGATACATCTATTGTGCTAA+AGG 0.436279 7.3:-7507944 MS.gene25215:CDS
GGGAGGTTATGTTATACAAA+AGG 0.451155 7.3:-7509075 MS.gene25215:CDS
ATGAACGGCGACAAAGAATT+CGG 0.464485 7.3:-7508540 MS.gene25215:CDS
TCCCGTAGTATGTTGCTGCT+TGG 0.470591 7.3:+7507559 None:intergenic
TGTGACTGACCAACATCAAC+AGG 0.471454 7.3:+7510004 None:intergenic
GTTGTGAGAATTGATTTGTT+GGG 0.475038 7.3:-7509095 MS.gene25215:CDS
AGTACACGACATTCCATTTG+AGG 0.475441 7.3:-7508115 MS.gene25215:CDS
AGGCTTTAGAAACATTAGAA+AGG 0.478529 7.3:-7507741 MS.gene25215:CDS
GATACATCTATTGTGCTAAA+GGG 0.484119 7.3:-7507943 MS.gene25215:CDS
ATCCATAGCATTTGATTCAT+CGG 0.487059 7.3:+7508464 None:intergenic
GGCTTTAGAAACATTAGAAA+GGG 0.487114 7.3:-7507740 MS.gene25215:CDS
AGATATTGTACAAATTGAAA+AGG 0.488307 7.3:-7507860 MS.gene25215:CDS
GTATTATAGGGAGTTCCCTC+TGG 0.491261 7.3:+7510055 None:intergenic
TGACAGCTTTATGCGTCTCA+TGG 0.495714 7.3:-7509879 MS.gene25215:intron
CTTTGACTAAGCTCTTCAGC+AGG 0.503153 7.3:+7508408 None:intergenic
TGTTGTGAGAATTGATTTGT+TGG 0.503261 7.3:-7509096 MS.gene25215:CDS
TAGTCAAAGTAAGCAAGATT+GGG 0.503463 7.3:-7508394 MS.gene25215:CDS
GACCAAGCAGCAACATACTA+CGG 0.504286 7.3:-7507561 MS.gene25215:CDS
TCAAGGCAACTTATTGGCAG+TGG 0.505086 7.3:-7508695 MS.gene25215:CDS
TGTTTGCAGAAGGTCCAGAC+TGG 0.509433 7.3:-7509536 MS.gene25215:CDS
AAGTAAATGACATTTCAGTC+GGG 0.509863 7.3:-7507972 MS.gene25215:CDS
GATGCAGTAACTTTGAAAGT+AGG 0.512463 7.3:+7509563 None:intergenic
TGCATCTGATTGTTTGCAGA+AGG 0.516483 7.3:-7509546 MS.gene25215:CDS
TACCGATGAATCAAATGCTA+TGG 0.518027 7.3:-7508466 MS.gene25215:CDS
AAAGTAAATGACATTTCAGT+CGG 0.519463 7.3:-7507973 MS.gene25215:CDS
ATGAAATTTATAAGGGATGG+AGG 0.526404 7.3:+7508719 None:intergenic
AGGGAATTTGGATATCAAGC+TGG 0.527263 7.3:-7508750 MS.gene25215:CDS
GAAATGAAATTTATAAGGGA+TGG 0.541927 7.3:+7508716 None:intergenic
AAAAGATGTATCACCTTCCT+CGG 0.546283 7.3:+7508242 None:intergenic
GACAGCTTTATGCGTCTCAT+GGG 0.548438 7.3:-7509878 MS.gene25215:intron
AGAGATTGTACAAATTGAGA+AGG 0.555855 7.3:-7508148 MS.gene25215:CDS
AGTGCTTCTGCAGATGAAAG+TGG 0.566002 7.3:-7510364 MS.gene25215:CDS
CATGACATTTCAACCGAGGA+AGG 0.569041 7.3:-7508255 MS.gene25215:CDS
AGAGATTGTACAAAGTGAGA+AGG 0.571592 7.3:-7508292 MS.gene25215:CDS
TCCCTTGTAGACAGTGGCCA+TGG 0.571642 7.3:+7509373 None:intergenic
AAGAAAGGATGAAGCCTCCA+TGG 0.577075 7.3:-7509390 MS.gene25215:intron
ACCAAGCAGCAACATACTAC+GGG 0.580272 7.3:-7507560 MS.gene25215:CDS
TGAATCAAATGCTATGGATG+AGG 0.587498 7.3:-7508460 MS.gene25215:CDS
TGGTTTCAGACTTTATCAGA+AGG 0.594007 7.3:-7508675 MS.gene25215:intron
GAAAATGATGTCAGTGCCAA+AGG 0.594639 7.3:-7507583 MS.gene25215:CDS
GTGGAGGATTTAGCACATCA+AGG 0.603076 7.3:-7510345 MS.gene25215:CDS
GTGAGAATTGATTTGTTGGG+AGG 0.607741 7.3:-7509092 MS.gene25215:CDS
CTTGTAGACAGTGGCCATGG+AGG 0.613608 7.3:+7509376 None:intergenic
TGATGTGATTCCTGAAGCAA+AGG 0.614045 7.3:-7509120 MS.gene25215:CDS
AACATACAACAAGTCAGTCA+AGG 0.623049 7.3:+7508512 None:intergenic
GCTGTAGCTTCTAAGATGAA+CGG 0.631947 7.3:-7508555 MS.gene25215:CDS
AGTAAATGACATTTCAGTCG+GGG 0.634575 7.3:-7507971 MS.gene25215:CDS
GTAGATGGACCTGTTGATGT+TGG 0.638645 7.3:-7510013 MS.gene25215:intron
TTCCGCGTTATGTATCGTGA+AGG 0.644276 7.3:-7510079 MS.gene25215:CDS
CAAAATGCAAATAATTACAA+TGG 0.645911 7.3:-7508339 MS.gene25215:CDS
TCCATGGCCACTGTCTACAA+GGG 0.652310 7.3:-7509374 MS.gene25215:CDS
AATACGGATTTCGTTCACGC+AGG 0.658313 7.3:-7507699 MS.gene25215:CDS
ATGGCCACTGTCTACAAGGG+AGG 0.663692 7.3:-7509371 MS.gene25215:CDS
ATGTATCGTGAAGGACCAGA+GGG 0.667773 7.3:-7510070 MS.gene25215:CDS
TATGTATCGTGAAGGACCAG+AGG 0.674519 7.3:-7510071 MS.gene25215:CDS
CGGCGACAAAGAATTCGGCA+AGG 0.680174 7.3:-7508535 MS.gene25215:CDS
GATGTGATTCCTGAAGCAAA+GGG 0.685960 7.3:-7509119 MS.gene25215:CDS
ACAGCCTCCCTTGTAGACAG+TGG 0.690378 7.3:+7509367 None:intergenic
GCTTCTGCAGATGAAAGTGG+AGG 0.692008 7.3:-7510361 MS.gene25215:CDS
AAAGTAGGAACAGTAAACTG+TGG 0.716270 7.3:+7509578 None:intergenic
AGTGCATGACATTTCAACCG+AGG 0.717008 7.3:-7508259 MS.gene25215:CDS
ACAGTTAAAACAGGATAACG+AGG 0.723822 7.3:-7510104 MS.gene25215:intron
GTCCTTCACGATACATAACG+CGG 0.774533 7.3:+7510077 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATATCAAAATATATAATA+TGG + chr7.3:7508058-7508077 None:intergenic 10.0%
!! AGAACAATTAATGAAAATTA+TGG - chr7.3:7508280-7508299 MS.gene25215:CDS 15.0%
!! ATTGAATATGATAATATAAG+AGG - chr7.3:7510172-7510191 MS.gene25215:intron 15.0%
!! GATAAAAATAAAACAAAACT+TGG + chr7.3:7507702-7507721 None:intergenic 15.0%
!! TGAAACAAAATATTACTTAT+TGG + chr7.3:7509148-7509167 None:intergenic 15.0%
!!! ATAAGTAATATTTTGTTTCA+TGG - chr7.3:7509148-7509167 MS.gene25215:CDS 15.0%
!!! ATTTTATATCATTTGTTGAT+TGG - chr7.3:7509004-7509023 MS.gene25215:intron 15.0%
!!! ATTTTTCAATTAAATTCTCA+AGG - chr7.3:7507830-7507849 MS.gene25215:CDS 15.0%
!!! ATTTTTTGTCAAATTTTGTA+GGG - chr7.3:7509206-7509225 MS.gene25215:intron 15.0%
!!! TATTTTTTGTCAAATTTTGT+AGG - chr7.3:7509205-7509224 MS.gene25215:intron 15.0%
!! AAAATTAATGAGACTATTGA+TGG - chr7.3:7508831-7508850 MS.gene25215:intron 20.0%
!! AGAAATGAAAATTGTGATAA+AGG + chr7.3:7508378-7508397 None:intergenic 20.0%
!! AGATATTGTACAAATTGAAA+AGG - chr7.3:7510123-7510142 MS.gene25215:intron 20.0%
!! CAAAATGCAAATAATTACAA+TGG - chr7.3:7509644-7509663 MS.gene25215:intron 20.0%
!! CCTTGAAATGAAATTTATAA+GGG + chr7.3:7509274-7509293 None:intergenic 20.0%
!! TATAATACATTGCTTATTGA+AGG - chr7.3:7507943-7507962 MS.gene25215:CDS 20.0%
!! TCAATAAGCAATGTATTATA+GGG + chr7.3:7507943-7507962 None:intergenic 20.0%
!! TTAGAAATTTCTCTTTCATT+GGG - chr7.3:7509050-7509069 MS.gene25215:CDS 20.0%
!! TTCAATAAGCAATGTATTAT+AGG + chr7.3:7507944-7507963 None:intergenic 20.0%
!! TTCGTTGTTAAACTTAAAAA+GGG + chr7.3:7508033-7508052 None:intergenic 20.0%
!!! AATACATCTTTTGTACTAAA+AGG - chr7.3:7509896-7509915 MS.gene25215:intron 20.0%
!!! CATTGTAATTATTTGCATTT+TGG + chr7.3:7509646-7509665 None:intergenic 20.0%
!!! TTTATGCTTAATTTTATCTC+AGG - chr7.3:7508794-7508813 MS.gene25215:intron 20.0%
! AAAGTAAATGACATTTCAGT+CGG - chr7.3:7510010-7510029 MS.gene25215:intron 25.0%
! AATCATCCCTTTATAAGAAA+TGG - chr7.3:7508128-7508147 MS.gene25215:CDS 25.0%
! ACTCATGAATATCTATGTAA+GGG - chr7.3:7508249-7508268 MS.gene25215:CDS 25.0%
! ATCTTCAATATTTGCTTCTA+TGG + chr7.3:7510107-7510126 None:intergenic 25.0%
! ATTCTCACCATTTCTTATAA+AGG + chr7.3:7508138-7508157 None:intergenic 25.0%
! ATTTCATCAGTTCAGAAATA+CGG - chr7.3:7510268-7510287 MS.gene25215:intron 25.0%
! CCCTTATAAATTTCATTTCA+AGG - chr7.3:7509271-7509290 MS.gene25215:intron 25.0%
! CTTCGTTGTTAAACTTAAAA+AGG + chr7.3:7508034-7508053 None:intergenic 25.0%
! GAAATGAAATTTATAAGGGA+TGG + chr7.3:7509270-7509289 None:intergenic 25.0%
! GCCTTGAAATGAAATTTATA+AGG + chr7.3:7509275-7509294 None:intergenic 25.0%
! GTATGCTTAATAATATCAGT+TGG + chr7.3:7508316-7508335 None:intergenic 25.0%
! GTTAGAAATTTCTCTTTCAT+TGG - chr7.3:7509049-7509068 MS.gene25215:intron 25.0%
! TCATCCTTTCTTACAAAATA+TGG + chr7.3:7508585-7508604 None:intergenic 25.0%
! TTCTCACCATTTCTTATAAA+GGG + chr7.3:7508137-7508156 None:intergenic 25.0%
!! ATTGATAACTTCATTTCAGA+AGG - chr7.3:7507724-7507743 MS.gene25215:CDS 25.0%
!! TATCACAATTTTCATTTCTC+AGG - chr7.3:7508379-7508398 MS.gene25215:CDS 25.0%
!! TCTGAAATGAAGTTATCAAT+TGG + chr7.3:7507724-7507743 None:intergenic 25.0%
!! TGTTCCATATTTTGTAAGAA+AGG - chr7.3:7508578-7508597 MS.gene25215:intron 25.0%
!! TTGATAACTTCATTTCAGAA+GGG - chr7.3:7507725-7507744 MS.gene25215:CDS 25.0%
!!! GATAGTAGTTCTTTTGAAAA+CGG - chr7.3:7508678-7508697 MS.gene25215:CDS 25.0%
!!! TCTATTTCTTTTTTTGTTGC+AGG - chr7.3:7507535-7507554 MS.gene25215:CDS 25.0%
AAGTAAATGACATTTCAGTC+GGG - chr7.3:7510011-7510030 MS.gene25215:intron 30.0%
ACTCACTTAAAAAAACTCAC+CGG + chr7.3:7508956-7508975 None:intergenic 30.0%
AGAAACAGAAAAAAAGATCG+AGG + chr7.3:7508710-7508729 None:intergenic 30.0%
AGAGATTGTACAAATTGAGA+AGG - chr7.3:7509835-7509854 MS.gene25215:intron 30.0%
ATACAAGCATTCAAAAGTGA+AGG + chr7.3:7508558-7508577 None:intergenic 30.0%
ATCCATAGCATTTGATTCAT+CGG + chr7.3:7509522-7509541 None:intergenic 30.0%
ATGAAATTTATAAGGGATGG+AGG + chr7.3:7509267-7509286 None:intergenic 30.0%
ATTGGGTGAAAAATATGTCT+CGG - chr7.3:7509606-7509625 MS.gene25215:intron 30.0%
ATTGTTACACAAGATTGCAT+TGG + chr7.3:7507767-7507786 None:intergenic 30.0%
CACTCATGAATATCTATGTA+AGG - chr7.3:7508248-7508267 MS.gene25215:CDS 30.0%
GAGAACAAATAGCACTAATA+AGG - chr7.3:7508469-7508488 MS.gene25215:CDS 30.0%
GATACATCTATTGTGCTAAA+GGG - chr7.3:7510040-7510059 MS.gene25215:CDS 30.0%
TAGTCAAAGTAAGCAAGATT+GGG - chr7.3:7509589-7509608 MS.gene25215:intron 30.0%
TATCAGCTCAAATGTAAAAC+AGG - chr7.3:7510222-7510241 MS.gene25215:intron 30.0%
TGATAACTTCATTTCAGAAG+GGG - chr7.3:7507726-7507745 MS.gene25215:CDS 30.0%
TGATACATCTATTGTGCTAA+AGG - chr7.3:7510039-7510058 MS.gene25215:CDS 30.0%
TTAGTCAAAGTAAGCAAGAT+TGG - chr7.3:7509588-7509607 MS.gene25215:intron 30.0%
TTCATTTCAAGGCAACTTAT+TGG - chr7.3:7509282-7509301 MS.gene25215:intron 30.0%
! AATGGTCAGATTTTAGATAC+AGG - chr7.3:7509662-7509681 MS.gene25215:intron 30.0%
! CATCTGAAAGAAGTTATTTC+CGG - chr7.3:7508934-7508953 MS.gene25215:intron 30.0%
! CCTTGGTTATTTAACTTCTT+CGG - chr7.3:7509079-7509098 MS.gene25215:CDS 30.0%
! GATACATCTTTTGTACTACA+TGG - chr7.3:7509752-7509771 MS.gene25215:intron 30.0%
! TAATAATATCAGTTGGTGTC+TGG + chr7.3:7508309-7508328 None:intergenic 30.0%
! TCAAATTTTGTAGGGCAATA+GGG - chr7.3:7509214-7509233 MS.gene25215:intron 30.0%
! TGAACAAGTTTTGCAGAATA+CGG + chr7.3:7510370-7510389 None:intergenic 30.0%
!! AAAAGTGAAGGCGTTTAATA+TGG + chr7.3:7508546-7508565 None:intergenic 30.0%
!! AGGCTTTAGAAACATTAGAA+AGG - chr7.3:7510242-7510261 MS.gene25215:intron 30.0%
!! GGCTTTAGAAACATTAGAAA+GGG - chr7.3:7510243-7510262 MS.gene25215:intron 30.0%
!! GTTGTGAGAATTGATTTGTT+GGG - chr7.3:7508888-7508907 MS.gene25215:intron 30.0%
!! TGTTGTGAGAATTGATTTGT+TGG - chr7.3:7508887-7508906 MS.gene25215:intron 30.0%
!!! TTTTTTTGTTGCAGGATATG+AGG - chr7.3:7507543-7507562 MS.gene25215:CDS 30.0%
AAAAGATGTATCACCTTCCT+CGG + chr7.3:7509744-7509763 None:intergenic 35.0%
AAAGTAGGAACAGTAAACTG+TGG + chr7.3:7508408-7508427 None:intergenic 35.0%
AACATACAACAAGTCAGTCA+AGG + chr7.3:7509474-7509493 None:intergenic 35.0%
AACATTAGTAGTAGCTTGGA+AGG - chr7.3:7508981-7509000 MS.gene25215:intron 35.0%
ACAGTTAAAACAGGATAACG+AGG - chr7.3:7507879-7507898 MS.gene25215:CDS 35.0%
AGAGATTGTACAAAGTGAGA+AGG - chr7.3:7509691-7509710 MS.gene25215:intron 35.0%
AGTAAATGACATTTCAGTCG+GGG - chr7.3:7510012-7510031 MS.gene25215:intron 35.0%
ATGGCGAGTGAGATTAAAAT+GGG + chr7.3:7508527-7508546 None:intergenic 35.0%
CAGAAGGGGAAAAAATTCAA+TGG - chr7.3:7507740-7507759 MS.gene25215:CDS 35.0%
CATGAATATCTATGTAAGGG+TGG - chr7.3:7508252-7508271 MS.gene25215:CDS 35.0%
CCGAAGAAGTTAAATAACCA+AGG + chr7.3:7509082-7509101 None:intergenic 35.0%
CTCAAACATTAGTAGTAGCT+TGG - chr7.3:7508977-7508996 MS.gene25215:intron 35.0%
CTTATTGAAGGCTATGTAGA+TGG - chr7.3:7507955-7507974 MS.gene25215:CDS 35.0%
CTTCTTTCGACAGTTAAAAC+AGG - chr7.3:7507870-7507889 MS.gene25215:CDS 35.0%
GATGTATTGCTTTCCTCAAA+TGG + chr7.3:7509884-7509903 None:intergenic 35.0%
GGGAGGTTATGTTATACAAA+AGG - chr7.3:7508908-7508927 MS.gene25215:intron 35.0%
TACCGATGAATCAAATGCTA+TGG - chr7.3:7509517-7509536 MS.gene25215:CDS 35.0%
TATGGCGAGTGAGATTAAAA+TGG + chr7.3:7508528-7508547 None:intergenic 35.0%
TGAATCAAATGCTATGGATG+AGG - chr7.3:7509523-7509542 MS.gene25215:CDS 35.0%
TGGTTTCAGACTTTATCAGA+AGG - chr7.3:7509308-7509327 MS.gene25215:CDS 35.0%
TTGGGTGAAAAATATGTCTC+GGG - chr7.3:7509607-7509626 MS.gene25215:intron 35.0%
! CACAATTTTCATTTCTCAGG+TGG - chr7.3:7508382-7508401 MS.gene25215:CDS 35.0%
! CGACAATCTCACAATTCTTT+TGG + chr7.3:7510066-7510085 None:intergenic 35.0%
! CTGACATCATTTTCAACAGA+TGG + chr7.3:7510394-7510413 None:intergenic 35.0%
! GATGCAGTAACTTTGAAAGT+AGG + chr7.3:7508423-7508442 None:intergenic 35.0%
! GTCAAATTTTGTAGGGCAAT+AGG - chr7.3:7509213-7509232 MS.gene25215:intron 35.0%
ACAGCCTATAACAACACCAA+GGG + chr7.3:7509413-7509432 None:intergenic 40.0%
AGGGAATTTGGATATCAAGC+TGG - chr7.3:7509233-7509252 MS.gene25215:intron 40.0%
AGTACACGACATTCCATTTG+AGG - chr7.3:7509868-7509887 MS.gene25215:CDS 40.0%
ATGAACGGCGACAAAGAATT+CGG - chr7.3:7509443-7509462 MS.gene25215:intron 40.0%
CTTTCATTGGGTTTGAACCT+TGG - chr7.3:7509062-7509081 MS.gene25215:CDS 40.0%
GAAAATGATGTCAGTGCCAA+AGG - chr7.3:7510400-7510419 MS.gene25215:CDS 40.0%
GATGTGATTCCTGAAGCAAA+GGG - chr7.3:7508864-7508883 MS.gene25215:intron 40.0%
TACAGCCTATAACAACACCA+AGG + chr7.3:7509414-7509433 None:intergenic 40.0%
TCAAGGACTGATTGGAAAGT+AGG - chr7.3:7507655-7507674 MS.gene25215:CDS 40.0%
TGATGTGATTCCTGAAGCAA+AGG - chr7.3:7508863-7508882 MS.gene25215:intron 40.0%
TGCATCTGATTGTTTGCAGA+AGG - chr7.3:7508437-7508456 MS.gene25215:CDS 40.0%
TTAGCACATCAAGGACTGAT+TGG - chr7.3:7507647-7507666 MS.gene25215:CDS 40.0%
TTGTAGGGCAATAGGGAATT+TGG - chr7.3:7509221-7509240 MS.gene25215:intron 40.0%
! CTTTTGTACTACATGGCAGT+AGG - chr7.3:7509759-7509778 MS.gene25215:intron 40.0%
!! GCTGTAGCTTCTAAGATGAA+CGG - chr7.3:7509428-7509447 MS.gene25215:intron 40.0%
!! GTGAGAATTGATTTGTTGGG+AGG - chr7.3:7508891-7508910 MS.gene25215:intron 40.0%
AAGAAAGGATGAAGCCTCCA+TGG - chr7.3:7508593-7508612 MS.gene25215:intron 45.0%
AATACGGATTTCGTTCACGC+AGG - chr7.3:7510284-7510303 MS.gene25215:intron 45.0%
ACCAAGCAGCAACATACTAC+GGG - chr7.3:7510423-7510442 MS.gene25215:CDS 45.0%
AGTGCATGACATTTCAACCG+AGG - chr7.3:7509724-7509743 MS.gene25215:intron 45.0%
AGTGCTTCTGCAGATGAAAG+TGG - chr7.3:7507619-7507638 MS.gene25215:CDS 45.0%
ATGTATCGTGAAGGACCAGA+GGG - chr7.3:7507913-7507932 MS.gene25215:CDS 45.0%
CATGACATTTCAACCGAGGA+AGG - chr7.3:7509728-7509747 MS.gene25215:intron 45.0%
CTTTGACTAAGCTCTTCAGC+AGG + chr7.3:7509578-7509597 None:intergenic 45.0%
GACCAAGCAGCAACATACTA+CGG - chr7.3:7510422-7510441 MS.gene25215:CDS 45.0%
GAGATCGCAGAAGCAGATAT+TGG - chr7.3:7509956-7509975 MS.gene25215:intron 45.0%
GGTGAAAAATATGTCTCGGG+AGG - chr7.3:7509610-7509629 MS.gene25215:intron 45.0%
GTAGATGGACCTGTTGATGT+TGG - chr7.3:7507970-7507989 MS.gene25215:CDS 45.0%
GTATTATAGGGAGTTCCCTC+TGG + chr7.3:7507931-7507950 None:intergenic 45.0%
GTCCTTCACGATACATAACG+CGG + chr7.3:7507909-7507928 None:intergenic 45.0%
GTGGAGGATTTAGCACATCA+AGG - chr7.3:7507638-7507657 MS.gene25215:CDS 45.0%
TATGTATCGTGAAGGACCAG+AGG - chr7.3:7507912-7507931 MS.gene25215:CDS 45.0%
TCAAGGCAACTTATTGGCAG+TGG - chr7.3:7509288-7509307 MS.gene25215:intron 45.0%
TGTGACTGACCAACATCAAC+AGG + chr7.3:7507982-7508001 None:intergenic 45.0%
TTCCGCGTTATGTATCGTGA+AGG - chr7.3:7507904-7507923 MS.gene25215:CDS 45.0%
! GACAGCTTTATGCGTCTCAT+GGG - chr7.3:7508105-7508124 MS.gene25215:CDS 45.0%
! TATGTTGCTGCTTGGTCCTT+TGG + chr7.3:7510419-7510438 None:intergenic 45.0%
! TGACAGCTTTATGCGTCTCA+TGG - chr7.3:7508104-7508123 MS.gene25215:CDS 45.0%
!! GTGCTATTTGTTCTCCAGTC+TGG + chr7.3:7508464-7508483 None:intergenic 45.0%
CCTATAACAACACCAAGGGC+TGG + chr7.3:7509409-7509428 None:intergenic 50.0%
CTCACAACACCCTTTGCTTC+AGG + chr7.3:7508876-7508895 None:intergenic 50.0%
GCTTCTGCAGATGAAAGTGG+AGG - chr7.3:7507622-7507641 MS.gene25215:CDS 50.0%
TCCATGGCCACTGTCTACAA+GGG - chr7.3:7508609-7508628 MS.gene25215:intron 50.0%
TCCCGTAGTATGTTGCTGCT+TGG + chr7.3:7510427-7510446 None:intergenic 50.0%
TGTTTGCAGAAGGTCCAGAC+TGG - chr7.3:7508447-7508466 MS.gene25215:CDS 50.0%
TTCTGACACTAACCAGCCCT+TGG - chr7.3:7509394-7509413 MS.gene25215:intron 50.0%
!! CCAGCCCTTGGTGTTGTTAT+AGG - chr7.3:7509406-7509425 MS.gene25215:intron 50.0%
ACAGCCTCCCTTGTAGACAG+TGG + chr7.3:7508619-7508638 None:intergenic 55.0%
ATGGCCACTGTCTACAAGGG+AGG - chr7.3:7508612-7508631 MS.gene25215:intron 55.0%
CGGCGACAAAGAATTCGGCA+AGG - chr7.3:7509448-7509467 MS.gene25215:intron 55.0%
CTCCATGGCCACTGTCTACA+AGG - chr7.3:7508608-7508627 MS.gene25215:intron 55.0%
CTTGTAGACAGTGGCCATGG+AGG + chr7.3:7508610-7508629 None:intergenic 55.0%
TCCCTTGTAGACAGTGGCCA+TGG + chr7.3:7508613-7508632 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 7507526 7510479 7507526 ID=MS.gene25215
chr7.3 mRNA 7507526 7510479 7507526 ID=MS.gene25215.t1;Parent=MS.gene25215
chr7.3 exon 7510333 7510479 7510333 ID=MS.gene25215.t1.exon1;Parent=MS.gene25215.t1
chr7.3 CDS 7510333 7510479 7510333 ID=cds.MS.gene25215.t1;Parent=MS.gene25215.t1
chr7.3 exon 7510014 7510122 7510014 ID=MS.gene25215.t1.exon2;Parent=MS.gene25215.t1
chr7.3 CDS 7510014 7510122 7510014 ID=cds.MS.gene25215.t1;Parent=MS.gene25215.t1
chr7.3 exon 7509856 7509895 7509856 ID=MS.gene25215.t1.exon3;Parent=MS.gene25215.t1
chr7.3 CDS 7509856 7509895 7509856 ID=cds.MS.gene25215.t1;Parent=MS.gene25215.t1
chr7.3 exon 7509515 7509604 7509515 ID=MS.gene25215.t1.exon4;Parent=MS.gene25215.t1
chr7.3 CDS 7509515 7509604 7509515 ID=cds.MS.gene25215.t1;Parent=MS.gene25215.t1
chr7.3 exon 7509306 7509405 7509306 ID=MS.gene25215.t1.exon5;Parent=MS.gene25215.t1
chr7.3 CDS 7509306 7509405 7509306 ID=cds.MS.gene25215.t1;Parent=MS.gene25215.t1
chr7.3 exon 7509050 7509189 7509050 ID=MS.gene25215.t1.exon6;Parent=MS.gene25215.t1
chr7.3 CDS 7509050 7509189 7509050 ID=cds.MS.gene25215.t1;Parent=MS.gene25215.t1
chr7.3 exon 7508676 7508778 7508676 ID=MS.gene25215.t1.exon7;Parent=MS.gene25215.t1
chr7.3 CDS 7508676 7508778 7508676 ID=cds.MS.gene25215.t1;Parent=MS.gene25215.t1
chr7.3 exon 7507526 7508577 7507526 ID=MS.gene25215.t1.exon8;Parent=MS.gene25215.t1
chr7.3 CDS 7507526 7508577 7507526 ID=cds.MS.gene25215.t1;Parent=MS.gene25215.t1
Gene Sequence

>MS.gene25215

ATGAGTTTATCTATTTCTTTTTTTGTTGCAGGATATGAGGAGAAACTAGAAATTAAGACTGCTGAGTTATCAAACTTTCTTGATATGATGAGAAGTGCTTCTGCAGATGAAAGTGGAGGATTTAGCACATCAAGGACTGATTGGAAAGTAGGCTATCTACTCTATAATTTTGACCAAGTTTTGTTTTATTTTTATCCAATTGATAACTTCATTTCAGAAGGGGAAAAAATTCAATGGACCAATGCAATCTTGTGTAACAATTGTGTTCTGAAGTCTAATTTTGCTTTCATCATTAGATACATGAATTTTTCAATTAAATTCTCAAGGCAATTTTGATCGTTTTTCTTCTTTCGACAGTTAAAACAGGATAACGAGGAATTCCGCGTTATGTATCGTGAAGGACCAGAGGGAACTCCCTATAATACATTGCTTATTGAAGGCTATGTAGATGGACCTGTTGATGTTGGTCAGTCACATTAAATCAGTCAATTTTTTTTAGCATCACCCTTTTTAAGTTTAACAACGAAGACCATATTATATATTTTGATATGTGAAATTTTAATGAATTATTTTGTTGATGACAGCTTTATGCGTCTCATGGGAATCATCCCTTTATAAGAAATGGTGAGAATCATCATGATCATTAAGATGATGTACTTTCAGTTTTCTTCGTATTTGTCTCATAATGACATGACATTGAAAACTAATGTAATTTATTTTTTCACTCATGAATATCTATGTAAGGGTGGTAATTAGAACAATTAATGAAAATTATGGCTACCAGACACCAACTGATATTATTAAGCATACAAATTAATTTGAATCTAAGTGAGATACTTGATAAAATAACCTTTATCACAATTTTCATTTCTCAGGTGGCCACAGTTTACTGTTCCTACTTTCAAAGTTACTGCATCTGATTGTTTGCAGAAGGTCCAGACTGGAGAACAAATAGCACTAATAAGGTTTGTATTGCAAGCAACAATTGAAAAAAGTATCCCATTTTAATCTCACTCGCCATATTAAACGCCTTCACTTTTGAATGCTTGTATTGTTCCATATTTTGTAAGAAAGGATGAAGCCTCCATGGCCACTGTCTACAAGGGAGGCTGTAGCGCATTATTATCTGTTTGAGTACATTCAAGATGACTTGATAGTAGTTCTTTTGAAAACGGTACTCACCTCGATCTTTTTTTCTGTTTCTTTTTTCTTTTCTTTTCTTTCTGTAGAAAGTTAACTATGAAGTATTATCTTTATGTTTTAAGAAATTTATGCTTAATTTTATCTCAGGTCACTGAGTCAGAGAAAATTAATGAGACTATTGATGGCTTCAGCAATGATGTGATTCCTGAAGCAAAGGGTGTTGTGAGAATTGATTTGTTGGGAGGTTATGTTATACAAAAGGTGACATCTGAAAGAAGTTATTTCCGGTGAGTTTTTTTAAGTGAGTACTCAAACATTAGTAGTAGCTTGGAAGGATTTTATATCATTTGTTGATTGGAAAATGTTAGTATAGAAGTTATGTTAGAAATTTCTCTTTCATTGGGTTTGAACCTTGGTTATTTAACTTCTTCGGATAGATAATTTTTATCATTGATTTTGCAAATAGCTGCTTTTTGCCAATAAGTAATATTTTGTTTCATGGAAAATTATGATCGAGTATTGTAATGTATTTTAATTATTTTTTGTCAAATTTTGTAGGGCAATAGGGAATTTGGATATCAAGCTGGATTTTATGCCTCCATCCCTTATAAATTTCATTTCAAGGCAACTTATTGGCAGTGGTTTCAGACTTTATCAGAAGGTTGTACATTCTTTTCAGATATGTTTCTTTTAAAAACTATATTTGTAAGTTCTTTTTTATCATCTTCTGACACTAACCAGCCCTTGGTGTTGTTATAGGCTGTAGCTTCTAAGATGAACGGCGACAAAGAATTCGGCAAGGCCTTGACTGACTTGTTGTATGTTAGAATTCGTGAAGCTCTATACAATACCGATGAATCAAATGCTATGGATGAGGACGAGCTTAAGCAAGTTGCAAGCATTTTTCCTGCTGAAGAGCTTAGTCAAAGTAAGCAAGATTGGGTGAAAAATATGTCTCGGGAGGATAGAAGCAACCAAAATGCAAATAATTACAATGGTCAGATTTTAGATACAGGTAGTGAAGAGATTGTACAAAGTGAGAAGGATTTCAAGAAAGTGCATGACATTTCAACCGAGGAAGGTGATACATCTTTTGTACTACATGGCAGTAGGAATTGTGAGATTGTCAACGCAGACAGTGAAGAGATTGTAGAAGAAAATATTGAAGAGATTGTACAAATTGAGAAGGATGTCAAGAAAGTACACGACATTCCATTTGAGGAAAGCAATACATCTTTTGTACTAAAAGGAAATAGTAACTGTGAGATTGTAGATGCAGATAGAGAAGAGATCGCAGAAGCAGATATTGGAGAGATTGTACAAATTGAAAAGAATGTAAAGAAAGTAAATGACATTTCAGTCGGGGAAGTTGATACATCTATTGTGCTAAAGGGCCAAAAGAATTGTGAGATTGTCGACGCAGATAGTGAAGAGACCATAGAAGCAAATATTGAAGATATTGTACAAATTGAAAAGGATGTGAATAAAGAACATGACGTTTCAATTGAATATGATAATATAAGAGGTGTATTGAAGAGAAAGAGTAATGTATATATCAGCTCAAATGTAAAACAGGCTTTAGAAACATTAGAAAGGGCTATTTCATCAGTTCAGAAATACGGATTTCGTTCACGCAGGTTCTCTTTTAGCTTTGTTAATGATGAGACAAGCTGCAAAGAAAAAGACGACAAAGAGTATCCGTATTCTGCAAAACTTGTTCAGCCATCTGTTGAAAATGATGTCAGTGCCAAAGGACCAAGCAGCAACATACTACGGGAAAGTTTAGATGATCTCGAAATCCAAAACTTCAG

Protein sequence

>MS.gene25215.t1

MSLSISFFVAGYEEKLEIKTAELSNFLDMMRSASADESGGFSTSRTDWKLKQDNEEFRVMYREGPEGTPYNTLLIEGYVDGPVDVALCVSWESSLYKKWWPQFTVPTFKVTASDCLQKVQTGEQIALIRMKPPWPLSTREAVAHYYLFEYIQDDLIVVLLKTVTESEKINETIDGFSNDVIPEAKGVVRIDLLGGYVIQKVTSERSYFRAIGNLDIKLDFMPPSLINFISRQLIGSGFRLYQKAVASKMNGDKEFGKALTDLLYVRIREALYNTDESNAMDEDELKQVASIFPAEELSQSKQDWVKNMSREDRSNQNANNYNGQILDTGSEEIVQSEKDFKKVHDISTEEGDTSFVLHGSRNCEIVNADSEEIVEENIEEIVQIEKDVKKVHDIPFEESNTSFVLKGNSNCEIVDADREEIAEADIGEIVQIEKNVKKVNDISVGEVDTSIVLKGQKNCEIVDADSEETIEANIEDIVQIEKDVNKEHDVSIEYDNIRGVLKRKSNVYISSNVKQALETLERAISSVQKYGFRSRRFSFSFVNDETSCKEKDDKEYPYSAKLVQPSVENDVSAKGPSSNILRESLDDLEIQNF