Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25215.t1 | RHN48808.1 | 96.1 | 584 | 22 | 1 | 11 | 593 | 49 | 632 | 4.10E-223 | 784.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25215.t1 | A0A396H7N9 | 96.1 | 584 | 22 | 1 | 11 | 593 | 49 | 632 | 3.0e-223 | 784.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene25215 | 0.84254 | 2.43E-58 | -1.69E-46 |
MS.gene049254 | MS.gene25215 | 0.809648 | 1.71E-50 | -1.69E-46 |
MS.gene049368 | MS.gene25215 | 0.801274 | 9.73E-49 | -1.69E-46 |
MS.gene049452 | MS.gene25215 | 0.816232 | 6.15E-52 | -1.69E-46 |
MS.gene049499 | MS.gene25215 | 0.80965 | 1.70E-50 | -1.69E-46 |
MS.gene049567 | MS.gene25215 | 0.803038 | 4.22E-49 | -1.69E-46 |
MS.gene049801 | MS.gene25215 | 0.803319 | 3.69E-49 | -1.69E-46 |
MS.gene049807 | MS.gene25215 | 0.807986 | 3.87E-50 | -1.69E-46 |
MS.gene049983 | MS.gene25215 | 0.82877 | 7.47E-55 | -1.69E-46 |
MS.gene050224 | MS.gene25215 | 0.802713 | 4.92E-49 | -1.69E-46 |
MS.gene050759 | MS.gene25215 | 0.804582 | 2.02E-49 | -1.69E-46 |
MS.gene050941 | MS.gene25215 | 0.809856 | 1.54E-50 | -1.69E-46 |
MS.gene051198 | MS.gene25215 | 0.8031 | 4.09E-49 | -1.69E-46 |
MS.gene051279 | MS.gene25215 | 0.822946 | 1.80E-53 | -1.69E-46 |
MS.gene051490 | MS.gene25215 | 0.808969 | 2.39E-50 | -1.69E-46 |
MS.gene051541 | MS.gene25215 | 0.810382 | 1.18E-50 | -1.69E-46 |
MS.gene051744 | MS.gene25215 | 0.838072 | 3.57E-57 | -1.69E-46 |
MS.gene051800 | MS.gene25215 | 0.829227 | 5.79E-55 | -1.69E-46 |
MS.gene052016 | MS.gene25215 | 0.808173 | 3.53E-50 | -1.69E-46 |
MS.gene052118 | MS.gene25215 | 0.801228 | 9.94E-49 | -1.69E-46 |
MS.gene052307 | MS.gene25215 | 0.8302 | 3.36E-55 | -1.69E-46 |
MS.gene052463 | MS.gene25215 | 0.82043 | 6.89E-53 | -1.69E-46 |
MS.gene052493 | MS.gene25215 | 0.824753 | 6.80E-54 | -1.69E-46 |
MS.gene052609 | MS.gene25215 | 0.821347 | 4.24E-53 | -1.69E-46 |
MS.gene052677 | MS.gene25215 | 0.801903 | 7.23E-49 | -1.69E-46 |
MS.gene052681 | MS.gene25215 | 0.806023 | 1.01E-49 | -1.69E-46 |
MS.gene053079 | MS.gene25215 | 0.824944 | 6.13E-54 | -1.69E-46 |
MS.gene053296 | MS.gene25215 | 0.80307 | 4.15E-49 | -1.69E-46 |
MS.gene053621 | MS.gene25215 | 0.803282 | 3.76E-49 | -1.69E-46 |
MS.gene05423 | MS.gene25215 | 0.814762 | 1.31E-51 | -1.69E-46 |
MS.gene054491 | MS.gene25215 | 0.805685 | 1.18E-49 | -1.69E-46 |
MS.gene05454 | MS.gene25215 | 0.804793 | 1.82E-49 | -1.69E-46 |
MS.gene054576 | MS.gene25215 | 0.833152 | 6.28E-56 | -1.69E-46 |
MS.gene054641 | MS.gene25215 | 0.8395 | 1.53E-57 | -1.69E-46 |
MS.gene054651 | MS.gene25215 | 0.811057 | 8.47E-51 | -1.69E-46 |
MS.gene054892 | MS.gene25215 | 0.834427 | 3.02E-56 | -1.69E-46 |
MS.gene054893 | MS.gene25215 | 0.834544 | 2.82E-56 | -1.69E-46 |
MS.gene055231 | MS.gene25215 | 0.801051 | 1.08E-48 | -1.69E-46 |
MS.gene055513 | MS.gene25215 | 0.828862 | 7.10E-55 | -1.69E-46 |
MS.gene055864 | MS.gene25215 | 0.867685 | 1.14E-65 | -1.69E-46 |
MS.gene056174 | MS.gene25215 | 0.853718 | 1.99E-61 | -1.69E-46 |
MS.gene056507 | MS.gene25215 | 0.80094 | 1.14E-48 | -1.69E-46 |
MS.gene056699 | MS.gene25215 | 0.807032 | 6.16E-50 | -1.69E-46 |
MS.gene05686 | MS.gene25215 | 0.838325 | 3.08E-57 | -1.69E-46 |
MS.gene05690 | MS.gene25215 | 0.812202 | 4.77E-51 | -1.69E-46 |
MS.gene057598 | MS.gene25215 | 0.800793 | 1.22E-48 | -1.69E-46 |
MS.gene057869 | MS.gene25215 | 0.802056 | 6.72E-49 | -1.69E-46 |
MS.gene058010 | MS.gene25215 | 0.841768 | 3.89E-58 | -1.69E-46 |
MS.gene058289 | MS.gene25215 | 0.821092 | 4.85E-53 | -1.69E-46 |
MS.gene058427 | MS.gene25215 | 0.815777 | 7.77E-52 | -1.69E-46 |
MS.gene058429 | MS.gene25215 | 0.837104 | 6.33E-57 | -1.69E-46 |
MS.gene058979 | MS.gene25215 | 0.808948 | 2.41E-50 | -1.69E-46 |
MS.gene059170 | MS.gene25215 | 0.851807 | 6.97E-61 | -1.69E-46 |
MS.gene059283 | MS.gene25215 | 0.838837 | 2.27E-57 | -1.69E-46 |
MS.gene059439 | MS.gene25215 | 0.809454 | 1.88E-50 | -1.69E-46 |
MS.gene05952 | MS.gene25215 | 0.813088 | 3.05E-51 | -1.69E-46 |
MS.gene059570 | MS.gene25215 | 0.826646 | 2.42E-54 | -1.69E-46 |
MS.gene059625 | MS.gene25215 | 0.800343 | 1.51E-48 | -1.69E-46 |
MS.gene059634 | MS.gene25215 | 0.817559 | 3.10E-52 | -1.69E-46 |
MS.gene059774 | MS.gene25215 | 0.833863 | 4.18E-56 | -1.69E-46 |
MS.gene060167 | MS.gene25215 | 0.811929 | 5.48E-51 | -1.69E-46 |
MS.gene060259 | MS.gene25215 | 0.80076 | 1.24E-48 | -1.69E-46 |
MS.gene060373 | MS.gene25215 | 0.805054 | 1.61E-49 | -1.69E-46 |
MS.gene06052 | MS.gene25215 | 0.851448 | 8.82E-61 | -1.69E-46 |
MS.gene060697 | MS.gene25215 | 0.833863 | 4.18E-56 | -1.69E-46 |
MS.gene060785 | MS.gene25215 | 0.820951 | 5.23E-53 | -1.69E-46 |
MS.gene060840 | MS.gene25215 | 0.806084 | 9.77E-50 | -1.69E-46 |
MS.gene060932 | MS.gene25215 | 0.826471 | 2.66E-54 | -1.69E-46 |
MS.gene060933 | MS.gene25215 | 0.800712 | 1.27E-48 | -1.69E-46 |
MS.gene060937 | MS.gene25215 | 0.805624 | 1.22E-49 | -1.69E-46 |
MS.gene061100 | MS.gene25215 | 0.823005 | 1.75E-53 | -1.69E-46 |
MS.gene06121 | MS.gene25215 | 0.802673 | 5.02E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25215.t1 | MTR_7g106640 | 93.857 | 586 | 35 | 1 | 9 | 593 | 47 | 632 | 0.0 | 1073 |
MS.gene25215.t1 | MTR_7g106640 | 94.178 | 584 | 33 | 1 | 11 | 593 | 49 | 632 | 0.0 | 1070 |
MS.gene25215.t1 | MTR_7g106640 | 93.645 | 535 | 33 | 1 | 60 | 593 | 1 | 535 | 0.0 | 969 |
MS.gene25215.t1 | MTR_7g106640 | 93.978 | 465 | 27 | 1 | 130 | 593 | 1 | 465 | 0.0 | 827 |
MS.gene25215.t1 | MTR_1g055315 | 61.219 | 361 | 113 | 6 | 12 | 353 | 48 | 400 | 9.91e-145 | 432 |
MS.gene25215.t1 | MTR_1g055315 | 37.931 | 116 | 64 | 3 | 468 | 582 | 371 | 479 | 7.17e-12 | 68.6 |
MS.gene25215.t1 | MTR_1g055315 | 60.641 | 343 | 109 | 5 | 29 | 353 | 1 | 335 | 3.12e-137 | 410 |
MS.gene25215.t1 | MTR_1g055315 | 37.931 | 116 | 64 | 3 | 468 | 582 | 306 | 414 | 6.25e-12 | 68.6 |
MS.gene25215.t1 | MTR_2g066850 | 70.614 | 228 | 44 | 4 | 85 | 311 | 732 | 937 | 6.12e-89 | 298 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25215.t1 | AT5G06440 | 55.639 | 266 | 114 | 2 | 13 | 277 | 42 | 304 | 5.69e-104 | 323 |
MS.gene25215.t1 | AT5G06440 | 55.639 | 266 | 114 | 2 | 13 | 277 | 42 | 304 | 5.69e-104 | 323 |
MS.gene25215.t1 | AT5G06440 | 53.480 | 273 | 116 | 3 | 13 | 277 | 42 | 311 | 1.31e-99 | 311 |
MS.gene25215.t1 | AT5G06440 | 59.565 | 230 | 88 | 2 | 49 | 277 | 5 | 230 | 1.08e-98 | 306 |
MS.gene25215.t1 | AT5G06440 | 59.817 | 219 | 83 | 2 | 60 | 277 | 1 | 215 | 1.01e-94 | 296 |
MS.gene25215.t1 | AT5G06440 | 56.118 | 237 | 98 | 3 | 13 | 247 | 42 | 274 | 1.32e-91 | 285 |
MS.gene25215.t1 | AT3G11720 | 46.043 | 278 | 126 | 5 | 16 | 288 | 46 | 304 | 5.72e-82 | 267 |
MS.gene25215.t1 | AT3G11720 | 46.043 | 278 | 126 | 5 | 16 | 288 | 46 | 304 | 5.72e-82 | 267 |
MS.gene25215.t1 | AT3G11720 | 46.043 | 278 | 126 | 5 | 16 | 288 | 100 | 358 | 4.16e-81 | 266 |
MS.gene25215.t1 | AT3G11720 | 49.130 | 230 | 97 | 4 | 60 | 288 | 1 | 211 | 4.53e-74 | 244 |
Find 95 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTGTAATTATTTGCATTT+TGG | 0.186628 | 7.3:+7508340 | None:intergenic |
ATCTTCAATATTTGCTTCTA+TGG | 0.193108 | 7.3:+7507879 | None:intergenic |
ATTCTCACCATTTCTTATAA+AGG | 0.226461 | 7.3:+7509848 | None:intergenic |
CGACAATCTCACAATTCTTT+TGG | 0.239123 | 7.3:+7507920 | None:intergenic |
TTGTAGGGCAATAGGGAATT+TGG | 0.245211 | 7.3:-7508762 | MS.gene25215:intron |
TTCATTTCAAGGCAACTTAT+TGG | 0.246795 | 7.3:-7508701 | MS.gene25215:CDS |
GTTAGACTTACCTGAAGTTT+TGG | 0.259196 | 7.3:+7507515 | None:intergenic |
GCCTTGAAATGAAATTTATA+AGG | 0.259631 | 7.3:+7508711 | None:intergenic |
TTCAATAAGCAATGTATTAT+AGG | 0.275063 | 7.3:+7510042 | None:intergenic |
CTCACAACACCCTTTGCTTC+AGG | 0.277935 | 7.3:+7509110 | None:intergenic |
TATGTTGCTGCTTGGTCCTT+TGG | 0.311330 | 7.3:+7507567 | None:intergenic |
TTCTCACCATTTCTTATAAA+GGG | 0.318688 | 7.3:+7509849 | None:intergenic |
CATCTGAAAGAAGTTATTTC+CGG | 0.324574 | 7.3:-7509049 | MS.gene25215:intron |
GATGTATTGCTTTCCTCAAA+TGG | 0.327557 | 7.3:+7508102 | None:intergenic |
GTGCTATTTGTTCTCCAGTC+TGG | 0.329723 | 7.3:+7509522 | None:intergenic |
CCCTTATAAATTTCATTTCA+AGG | 0.335848 | 7.3:-7508712 | MS.gene25215:CDS |
GAGAACAAATAGCACTAATA+AGG | 0.341307 | 7.3:-7509514 | MS.gene25215:intron |
CTTATTGAAGGCTATGTAGA+TGG | 0.348985 | 7.3:-7510028 | MS.gene25215:CDS |
GAGATCGCAGAAGCAGATAT+TGG | 0.371598 | 7.3:-7508027 | MS.gene25215:CDS |
AAAATTAATGAGACTATTGA+TGG | 0.372387 | 7.3:-7509152 | MS.gene25215:CDS |
ATCTCGAAATCCAAAACTTC+AGG | 0.378941 | 7.3:-7507525 | None:intergenic |
AATCATCCCTTTATAAGAAA+TGG | 0.382734 | 7.3:-7509855 | MS.gene25215:intron |
TCAATAAGCAATGTATTATA+GGG | 0.386854 | 7.3:+7510043 | None:intergenic |
TATAATACATTGCTTATTGA+AGG | 0.397643 | 7.3:-7510040 | MS.gene25215:CDS |
TATCAGCTCAAATGTAAAAC+AGG | 0.404649 | 7.3:-7507761 | MS.gene25215:CDS |
ATTTCATCAGTTCAGAAATA+CGG | 0.409322 | 7.3:-7507715 | MS.gene25215:CDS |
CCTTGAAATGAAATTTATAA+GGG | 0.411284 | 7.3:+7508712 | None:intergenic |
TTAGTCAAAGTAAGCAAGAT+TGG | 0.417597 | 7.3:-7508395 | MS.gene25215:CDS |
CTTCTTTCGACAGTTAAAAC+AGG | 0.422510 | 7.3:-7510113 | MS.gene25215:intron |
ATTGAATATGATAATATAAG+AGG | 0.428070 | 7.3:-7507811 | MS.gene25215:CDS |
TTAGCACATCAAGGACTGAT+TGG | 0.429890 | 7.3:-7510336 | MS.gene25215:CDS |
CTCCATGGCCACTGTCTACA+AGG | 0.436068 | 7.3:-7509375 | MS.gene25215:CDS |
TGATACATCTATTGTGCTAA+AGG | 0.436279 | 7.3:-7507944 | MS.gene25215:CDS |
GGGAGGTTATGTTATACAAA+AGG | 0.451155 | 7.3:-7509075 | MS.gene25215:CDS |
ATGAACGGCGACAAAGAATT+CGG | 0.464485 | 7.3:-7508540 | MS.gene25215:CDS |
TCCCGTAGTATGTTGCTGCT+TGG | 0.470591 | 7.3:+7507559 | None:intergenic |
TGTGACTGACCAACATCAAC+AGG | 0.471454 | 7.3:+7510004 | None:intergenic |
GTTGTGAGAATTGATTTGTT+GGG | 0.475038 | 7.3:-7509095 | MS.gene25215:CDS |
AGTACACGACATTCCATTTG+AGG | 0.475441 | 7.3:-7508115 | MS.gene25215:CDS |
AGGCTTTAGAAACATTAGAA+AGG | 0.478529 | 7.3:-7507741 | MS.gene25215:CDS |
GATACATCTATTGTGCTAAA+GGG | 0.484119 | 7.3:-7507943 | MS.gene25215:CDS |
ATCCATAGCATTTGATTCAT+CGG | 0.487059 | 7.3:+7508464 | None:intergenic |
GGCTTTAGAAACATTAGAAA+GGG | 0.487114 | 7.3:-7507740 | MS.gene25215:CDS |
AGATATTGTACAAATTGAAA+AGG | 0.488307 | 7.3:-7507860 | MS.gene25215:CDS |
GTATTATAGGGAGTTCCCTC+TGG | 0.491261 | 7.3:+7510055 | None:intergenic |
TGACAGCTTTATGCGTCTCA+TGG | 0.495714 | 7.3:-7509879 | MS.gene25215:intron |
CTTTGACTAAGCTCTTCAGC+AGG | 0.503153 | 7.3:+7508408 | None:intergenic |
TGTTGTGAGAATTGATTTGT+TGG | 0.503261 | 7.3:-7509096 | MS.gene25215:CDS |
TAGTCAAAGTAAGCAAGATT+GGG | 0.503463 | 7.3:-7508394 | MS.gene25215:CDS |
GACCAAGCAGCAACATACTA+CGG | 0.504286 | 7.3:-7507561 | MS.gene25215:CDS |
TCAAGGCAACTTATTGGCAG+TGG | 0.505086 | 7.3:-7508695 | MS.gene25215:CDS |
TGTTTGCAGAAGGTCCAGAC+TGG | 0.509433 | 7.3:-7509536 | MS.gene25215:CDS |
AAGTAAATGACATTTCAGTC+GGG | 0.509863 | 7.3:-7507972 | MS.gene25215:CDS |
GATGCAGTAACTTTGAAAGT+AGG | 0.512463 | 7.3:+7509563 | None:intergenic |
TGCATCTGATTGTTTGCAGA+AGG | 0.516483 | 7.3:-7509546 | MS.gene25215:CDS |
TACCGATGAATCAAATGCTA+TGG | 0.518027 | 7.3:-7508466 | MS.gene25215:CDS |
AAAGTAAATGACATTTCAGT+CGG | 0.519463 | 7.3:-7507973 | MS.gene25215:CDS |
ATGAAATTTATAAGGGATGG+AGG | 0.526404 | 7.3:+7508719 | None:intergenic |
AGGGAATTTGGATATCAAGC+TGG | 0.527263 | 7.3:-7508750 | MS.gene25215:CDS |
GAAATGAAATTTATAAGGGA+TGG | 0.541927 | 7.3:+7508716 | None:intergenic |
AAAAGATGTATCACCTTCCT+CGG | 0.546283 | 7.3:+7508242 | None:intergenic |
GACAGCTTTATGCGTCTCAT+GGG | 0.548438 | 7.3:-7509878 | MS.gene25215:intron |
AGAGATTGTACAAATTGAGA+AGG | 0.555855 | 7.3:-7508148 | MS.gene25215:CDS |
AGTGCTTCTGCAGATGAAAG+TGG | 0.566002 | 7.3:-7510364 | MS.gene25215:CDS |
CATGACATTTCAACCGAGGA+AGG | 0.569041 | 7.3:-7508255 | MS.gene25215:CDS |
AGAGATTGTACAAAGTGAGA+AGG | 0.571592 | 7.3:-7508292 | MS.gene25215:CDS |
TCCCTTGTAGACAGTGGCCA+TGG | 0.571642 | 7.3:+7509373 | None:intergenic |
AAGAAAGGATGAAGCCTCCA+TGG | 0.577075 | 7.3:-7509390 | MS.gene25215:intron |
ACCAAGCAGCAACATACTAC+GGG | 0.580272 | 7.3:-7507560 | MS.gene25215:CDS |
TGAATCAAATGCTATGGATG+AGG | 0.587498 | 7.3:-7508460 | MS.gene25215:CDS |
TGGTTTCAGACTTTATCAGA+AGG | 0.594007 | 7.3:-7508675 | MS.gene25215:intron |
GAAAATGATGTCAGTGCCAA+AGG | 0.594639 | 7.3:-7507583 | MS.gene25215:CDS |
GTGGAGGATTTAGCACATCA+AGG | 0.603076 | 7.3:-7510345 | MS.gene25215:CDS |
GTGAGAATTGATTTGTTGGG+AGG | 0.607741 | 7.3:-7509092 | MS.gene25215:CDS |
CTTGTAGACAGTGGCCATGG+AGG | 0.613608 | 7.3:+7509376 | None:intergenic |
TGATGTGATTCCTGAAGCAA+AGG | 0.614045 | 7.3:-7509120 | MS.gene25215:CDS |
AACATACAACAAGTCAGTCA+AGG | 0.623049 | 7.3:+7508512 | None:intergenic |
GCTGTAGCTTCTAAGATGAA+CGG | 0.631947 | 7.3:-7508555 | MS.gene25215:CDS |
AGTAAATGACATTTCAGTCG+GGG | 0.634575 | 7.3:-7507971 | MS.gene25215:CDS |
GTAGATGGACCTGTTGATGT+TGG | 0.638645 | 7.3:-7510013 | MS.gene25215:intron |
TTCCGCGTTATGTATCGTGA+AGG | 0.644276 | 7.3:-7510079 | MS.gene25215:CDS |
CAAAATGCAAATAATTACAA+TGG | 0.645911 | 7.3:-7508339 | MS.gene25215:CDS |
TCCATGGCCACTGTCTACAA+GGG | 0.652310 | 7.3:-7509374 | MS.gene25215:CDS |
AATACGGATTTCGTTCACGC+AGG | 0.658313 | 7.3:-7507699 | MS.gene25215:CDS |
ATGGCCACTGTCTACAAGGG+AGG | 0.663692 | 7.3:-7509371 | MS.gene25215:CDS |
ATGTATCGTGAAGGACCAGA+GGG | 0.667773 | 7.3:-7510070 | MS.gene25215:CDS |
TATGTATCGTGAAGGACCAG+AGG | 0.674519 | 7.3:-7510071 | MS.gene25215:CDS |
CGGCGACAAAGAATTCGGCA+AGG | 0.680174 | 7.3:-7508535 | MS.gene25215:CDS |
GATGTGATTCCTGAAGCAAA+GGG | 0.685960 | 7.3:-7509119 | MS.gene25215:CDS |
ACAGCCTCCCTTGTAGACAG+TGG | 0.690378 | 7.3:+7509367 | None:intergenic |
GCTTCTGCAGATGAAAGTGG+AGG | 0.692008 | 7.3:-7510361 | MS.gene25215:CDS |
AAAGTAGGAACAGTAAACTG+TGG | 0.716270 | 7.3:+7509578 | None:intergenic |
AGTGCATGACATTTCAACCG+AGG | 0.717008 | 7.3:-7508259 | MS.gene25215:CDS |
ACAGTTAAAACAGGATAACG+AGG | 0.723822 | 7.3:-7510104 | MS.gene25215:intron |
GTCCTTCACGATACATAACG+CGG | 0.774533 | 7.3:+7510077 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACATATCAAAATATATAATA+TGG | + | chr7.3:7508058-7508077 | None:intergenic | 10.0% |
!! | AGAACAATTAATGAAAATTA+TGG | - | chr7.3:7508280-7508299 | MS.gene25215:CDS | 15.0% |
!! | ATTGAATATGATAATATAAG+AGG | - | chr7.3:7510172-7510191 | MS.gene25215:intron | 15.0% |
!! | GATAAAAATAAAACAAAACT+TGG | + | chr7.3:7507702-7507721 | None:intergenic | 15.0% |
!! | TGAAACAAAATATTACTTAT+TGG | + | chr7.3:7509148-7509167 | None:intergenic | 15.0% |
!!! | ATAAGTAATATTTTGTTTCA+TGG | - | chr7.3:7509148-7509167 | MS.gene25215:CDS | 15.0% |
!!! | ATTTTATATCATTTGTTGAT+TGG | - | chr7.3:7509004-7509023 | MS.gene25215:intron | 15.0% |
!!! | ATTTTTCAATTAAATTCTCA+AGG | - | chr7.3:7507830-7507849 | MS.gene25215:CDS | 15.0% |
!!! | ATTTTTTGTCAAATTTTGTA+GGG | - | chr7.3:7509206-7509225 | MS.gene25215:intron | 15.0% |
!!! | TATTTTTTGTCAAATTTTGT+AGG | - | chr7.3:7509205-7509224 | MS.gene25215:intron | 15.0% |
!! | AAAATTAATGAGACTATTGA+TGG | - | chr7.3:7508831-7508850 | MS.gene25215:intron | 20.0% |
!! | AGAAATGAAAATTGTGATAA+AGG | + | chr7.3:7508378-7508397 | None:intergenic | 20.0% |
!! | AGATATTGTACAAATTGAAA+AGG | - | chr7.3:7510123-7510142 | MS.gene25215:intron | 20.0% |
!! | CAAAATGCAAATAATTACAA+TGG | - | chr7.3:7509644-7509663 | MS.gene25215:intron | 20.0% |
!! | CCTTGAAATGAAATTTATAA+GGG | + | chr7.3:7509274-7509293 | None:intergenic | 20.0% |
!! | TATAATACATTGCTTATTGA+AGG | - | chr7.3:7507943-7507962 | MS.gene25215:CDS | 20.0% |
!! | TCAATAAGCAATGTATTATA+GGG | + | chr7.3:7507943-7507962 | None:intergenic | 20.0% |
!! | TTAGAAATTTCTCTTTCATT+GGG | - | chr7.3:7509050-7509069 | MS.gene25215:CDS | 20.0% |
!! | TTCAATAAGCAATGTATTAT+AGG | + | chr7.3:7507944-7507963 | None:intergenic | 20.0% |
!! | TTCGTTGTTAAACTTAAAAA+GGG | + | chr7.3:7508033-7508052 | None:intergenic | 20.0% |
!!! | AATACATCTTTTGTACTAAA+AGG | - | chr7.3:7509896-7509915 | MS.gene25215:intron | 20.0% |
!!! | CATTGTAATTATTTGCATTT+TGG | + | chr7.3:7509646-7509665 | None:intergenic | 20.0% |
!!! | TTTATGCTTAATTTTATCTC+AGG | - | chr7.3:7508794-7508813 | MS.gene25215:intron | 20.0% |
! | AAAGTAAATGACATTTCAGT+CGG | - | chr7.3:7510010-7510029 | MS.gene25215:intron | 25.0% |
! | AATCATCCCTTTATAAGAAA+TGG | - | chr7.3:7508128-7508147 | MS.gene25215:CDS | 25.0% |
! | ACTCATGAATATCTATGTAA+GGG | - | chr7.3:7508249-7508268 | MS.gene25215:CDS | 25.0% |
! | ATCTTCAATATTTGCTTCTA+TGG | + | chr7.3:7510107-7510126 | None:intergenic | 25.0% |
! | ATTCTCACCATTTCTTATAA+AGG | + | chr7.3:7508138-7508157 | None:intergenic | 25.0% |
! | ATTTCATCAGTTCAGAAATA+CGG | - | chr7.3:7510268-7510287 | MS.gene25215:intron | 25.0% |
! | CCCTTATAAATTTCATTTCA+AGG | - | chr7.3:7509271-7509290 | MS.gene25215:intron | 25.0% |
! | CTTCGTTGTTAAACTTAAAA+AGG | + | chr7.3:7508034-7508053 | None:intergenic | 25.0% |
! | GAAATGAAATTTATAAGGGA+TGG | + | chr7.3:7509270-7509289 | None:intergenic | 25.0% |
! | GCCTTGAAATGAAATTTATA+AGG | + | chr7.3:7509275-7509294 | None:intergenic | 25.0% |
! | GTATGCTTAATAATATCAGT+TGG | + | chr7.3:7508316-7508335 | None:intergenic | 25.0% |
! | GTTAGAAATTTCTCTTTCAT+TGG | - | chr7.3:7509049-7509068 | MS.gene25215:intron | 25.0% |
! | TCATCCTTTCTTACAAAATA+TGG | + | chr7.3:7508585-7508604 | None:intergenic | 25.0% |
! | TTCTCACCATTTCTTATAAA+GGG | + | chr7.3:7508137-7508156 | None:intergenic | 25.0% |
!! | ATTGATAACTTCATTTCAGA+AGG | - | chr7.3:7507724-7507743 | MS.gene25215:CDS | 25.0% |
!! | TATCACAATTTTCATTTCTC+AGG | - | chr7.3:7508379-7508398 | MS.gene25215:CDS | 25.0% |
!! | TCTGAAATGAAGTTATCAAT+TGG | + | chr7.3:7507724-7507743 | None:intergenic | 25.0% |
!! | TGTTCCATATTTTGTAAGAA+AGG | - | chr7.3:7508578-7508597 | MS.gene25215:intron | 25.0% |
!! | TTGATAACTTCATTTCAGAA+GGG | - | chr7.3:7507725-7507744 | MS.gene25215:CDS | 25.0% |
!!! | GATAGTAGTTCTTTTGAAAA+CGG | - | chr7.3:7508678-7508697 | MS.gene25215:CDS | 25.0% |
!!! | TCTATTTCTTTTTTTGTTGC+AGG | - | chr7.3:7507535-7507554 | MS.gene25215:CDS | 25.0% |
AAGTAAATGACATTTCAGTC+GGG | - | chr7.3:7510011-7510030 | MS.gene25215:intron | 30.0% | |
ACTCACTTAAAAAAACTCAC+CGG | + | chr7.3:7508956-7508975 | None:intergenic | 30.0% | |
AGAAACAGAAAAAAAGATCG+AGG | + | chr7.3:7508710-7508729 | None:intergenic | 30.0% | |
AGAGATTGTACAAATTGAGA+AGG | - | chr7.3:7509835-7509854 | MS.gene25215:intron | 30.0% | |
ATACAAGCATTCAAAAGTGA+AGG | + | chr7.3:7508558-7508577 | None:intergenic | 30.0% | |
ATCCATAGCATTTGATTCAT+CGG | + | chr7.3:7509522-7509541 | None:intergenic | 30.0% | |
ATGAAATTTATAAGGGATGG+AGG | + | chr7.3:7509267-7509286 | None:intergenic | 30.0% | |
ATTGGGTGAAAAATATGTCT+CGG | - | chr7.3:7509606-7509625 | MS.gene25215:intron | 30.0% | |
ATTGTTACACAAGATTGCAT+TGG | + | chr7.3:7507767-7507786 | None:intergenic | 30.0% | |
CACTCATGAATATCTATGTA+AGG | - | chr7.3:7508248-7508267 | MS.gene25215:CDS | 30.0% | |
GAGAACAAATAGCACTAATA+AGG | - | chr7.3:7508469-7508488 | MS.gene25215:CDS | 30.0% | |
GATACATCTATTGTGCTAAA+GGG | - | chr7.3:7510040-7510059 | MS.gene25215:CDS | 30.0% | |
TAGTCAAAGTAAGCAAGATT+GGG | - | chr7.3:7509589-7509608 | MS.gene25215:intron | 30.0% | |
TATCAGCTCAAATGTAAAAC+AGG | - | chr7.3:7510222-7510241 | MS.gene25215:intron | 30.0% | |
TGATAACTTCATTTCAGAAG+GGG | - | chr7.3:7507726-7507745 | MS.gene25215:CDS | 30.0% | |
TGATACATCTATTGTGCTAA+AGG | - | chr7.3:7510039-7510058 | MS.gene25215:CDS | 30.0% | |
TTAGTCAAAGTAAGCAAGAT+TGG | - | chr7.3:7509588-7509607 | MS.gene25215:intron | 30.0% | |
TTCATTTCAAGGCAACTTAT+TGG | - | chr7.3:7509282-7509301 | MS.gene25215:intron | 30.0% | |
! | AATGGTCAGATTTTAGATAC+AGG | - | chr7.3:7509662-7509681 | MS.gene25215:intron | 30.0% |
! | CATCTGAAAGAAGTTATTTC+CGG | - | chr7.3:7508934-7508953 | MS.gene25215:intron | 30.0% |
! | CCTTGGTTATTTAACTTCTT+CGG | - | chr7.3:7509079-7509098 | MS.gene25215:CDS | 30.0% |
! | GATACATCTTTTGTACTACA+TGG | - | chr7.3:7509752-7509771 | MS.gene25215:intron | 30.0% |
! | TAATAATATCAGTTGGTGTC+TGG | + | chr7.3:7508309-7508328 | None:intergenic | 30.0% |
! | TCAAATTTTGTAGGGCAATA+GGG | - | chr7.3:7509214-7509233 | MS.gene25215:intron | 30.0% |
! | TGAACAAGTTTTGCAGAATA+CGG | + | chr7.3:7510370-7510389 | None:intergenic | 30.0% |
!! | AAAAGTGAAGGCGTTTAATA+TGG | + | chr7.3:7508546-7508565 | None:intergenic | 30.0% |
!! | AGGCTTTAGAAACATTAGAA+AGG | - | chr7.3:7510242-7510261 | MS.gene25215:intron | 30.0% |
!! | GGCTTTAGAAACATTAGAAA+GGG | - | chr7.3:7510243-7510262 | MS.gene25215:intron | 30.0% |
!! | GTTGTGAGAATTGATTTGTT+GGG | - | chr7.3:7508888-7508907 | MS.gene25215:intron | 30.0% |
!! | TGTTGTGAGAATTGATTTGT+TGG | - | chr7.3:7508887-7508906 | MS.gene25215:intron | 30.0% |
!!! | TTTTTTTGTTGCAGGATATG+AGG | - | chr7.3:7507543-7507562 | MS.gene25215:CDS | 30.0% |
AAAAGATGTATCACCTTCCT+CGG | + | chr7.3:7509744-7509763 | None:intergenic | 35.0% | |
AAAGTAGGAACAGTAAACTG+TGG | + | chr7.3:7508408-7508427 | None:intergenic | 35.0% | |
AACATACAACAAGTCAGTCA+AGG | + | chr7.3:7509474-7509493 | None:intergenic | 35.0% | |
AACATTAGTAGTAGCTTGGA+AGG | - | chr7.3:7508981-7509000 | MS.gene25215:intron | 35.0% | |
ACAGTTAAAACAGGATAACG+AGG | - | chr7.3:7507879-7507898 | MS.gene25215:CDS | 35.0% | |
AGAGATTGTACAAAGTGAGA+AGG | - | chr7.3:7509691-7509710 | MS.gene25215:intron | 35.0% | |
AGTAAATGACATTTCAGTCG+GGG | - | chr7.3:7510012-7510031 | MS.gene25215:intron | 35.0% | |
ATGGCGAGTGAGATTAAAAT+GGG | + | chr7.3:7508527-7508546 | None:intergenic | 35.0% | |
CAGAAGGGGAAAAAATTCAA+TGG | - | chr7.3:7507740-7507759 | MS.gene25215:CDS | 35.0% | |
CATGAATATCTATGTAAGGG+TGG | - | chr7.3:7508252-7508271 | MS.gene25215:CDS | 35.0% | |
CCGAAGAAGTTAAATAACCA+AGG | + | chr7.3:7509082-7509101 | None:intergenic | 35.0% | |
CTCAAACATTAGTAGTAGCT+TGG | - | chr7.3:7508977-7508996 | MS.gene25215:intron | 35.0% | |
CTTATTGAAGGCTATGTAGA+TGG | - | chr7.3:7507955-7507974 | MS.gene25215:CDS | 35.0% | |
CTTCTTTCGACAGTTAAAAC+AGG | - | chr7.3:7507870-7507889 | MS.gene25215:CDS | 35.0% | |
GATGTATTGCTTTCCTCAAA+TGG | + | chr7.3:7509884-7509903 | None:intergenic | 35.0% | |
GGGAGGTTATGTTATACAAA+AGG | - | chr7.3:7508908-7508927 | MS.gene25215:intron | 35.0% | |
TACCGATGAATCAAATGCTA+TGG | - | chr7.3:7509517-7509536 | MS.gene25215:CDS | 35.0% | |
TATGGCGAGTGAGATTAAAA+TGG | + | chr7.3:7508528-7508547 | None:intergenic | 35.0% | |
TGAATCAAATGCTATGGATG+AGG | - | chr7.3:7509523-7509542 | MS.gene25215:CDS | 35.0% | |
TGGTTTCAGACTTTATCAGA+AGG | - | chr7.3:7509308-7509327 | MS.gene25215:CDS | 35.0% | |
TTGGGTGAAAAATATGTCTC+GGG | - | chr7.3:7509607-7509626 | MS.gene25215:intron | 35.0% | |
! | CACAATTTTCATTTCTCAGG+TGG | - | chr7.3:7508382-7508401 | MS.gene25215:CDS | 35.0% |
! | CGACAATCTCACAATTCTTT+TGG | + | chr7.3:7510066-7510085 | None:intergenic | 35.0% |
! | CTGACATCATTTTCAACAGA+TGG | + | chr7.3:7510394-7510413 | None:intergenic | 35.0% |
! | GATGCAGTAACTTTGAAAGT+AGG | + | chr7.3:7508423-7508442 | None:intergenic | 35.0% |
! | GTCAAATTTTGTAGGGCAAT+AGG | - | chr7.3:7509213-7509232 | MS.gene25215:intron | 35.0% |
ACAGCCTATAACAACACCAA+GGG | + | chr7.3:7509413-7509432 | None:intergenic | 40.0% | |
AGGGAATTTGGATATCAAGC+TGG | - | chr7.3:7509233-7509252 | MS.gene25215:intron | 40.0% | |
AGTACACGACATTCCATTTG+AGG | - | chr7.3:7509868-7509887 | MS.gene25215:CDS | 40.0% | |
ATGAACGGCGACAAAGAATT+CGG | - | chr7.3:7509443-7509462 | MS.gene25215:intron | 40.0% | |
CTTTCATTGGGTTTGAACCT+TGG | - | chr7.3:7509062-7509081 | MS.gene25215:CDS | 40.0% | |
GAAAATGATGTCAGTGCCAA+AGG | - | chr7.3:7510400-7510419 | MS.gene25215:CDS | 40.0% | |
GATGTGATTCCTGAAGCAAA+GGG | - | chr7.3:7508864-7508883 | MS.gene25215:intron | 40.0% | |
TACAGCCTATAACAACACCA+AGG | + | chr7.3:7509414-7509433 | None:intergenic | 40.0% | |
TCAAGGACTGATTGGAAAGT+AGG | - | chr7.3:7507655-7507674 | MS.gene25215:CDS | 40.0% | |
TGATGTGATTCCTGAAGCAA+AGG | - | chr7.3:7508863-7508882 | MS.gene25215:intron | 40.0% | |
TGCATCTGATTGTTTGCAGA+AGG | - | chr7.3:7508437-7508456 | MS.gene25215:CDS | 40.0% | |
TTAGCACATCAAGGACTGAT+TGG | - | chr7.3:7507647-7507666 | MS.gene25215:CDS | 40.0% | |
TTGTAGGGCAATAGGGAATT+TGG | - | chr7.3:7509221-7509240 | MS.gene25215:intron | 40.0% | |
! | CTTTTGTACTACATGGCAGT+AGG | - | chr7.3:7509759-7509778 | MS.gene25215:intron | 40.0% |
!! | GCTGTAGCTTCTAAGATGAA+CGG | - | chr7.3:7509428-7509447 | MS.gene25215:intron | 40.0% |
!! | GTGAGAATTGATTTGTTGGG+AGG | - | chr7.3:7508891-7508910 | MS.gene25215:intron | 40.0% |
AAGAAAGGATGAAGCCTCCA+TGG | - | chr7.3:7508593-7508612 | MS.gene25215:intron | 45.0% | |
AATACGGATTTCGTTCACGC+AGG | - | chr7.3:7510284-7510303 | MS.gene25215:intron | 45.0% | |
ACCAAGCAGCAACATACTAC+GGG | - | chr7.3:7510423-7510442 | MS.gene25215:CDS | 45.0% | |
AGTGCATGACATTTCAACCG+AGG | - | chr7.3:7509724-7509743 | MS.gene25215:intron | 45.0% | |
AGTGCTTCTGCAGATGAAAG+TGG | - | chr7.3:7507619-7507638 | MS.gene25215:CDS | 45.0% | |
ATGTATCGTGAAGGACCAGA+GGG | - | chr7.3:7507913-7507932 | MS.gene25215:CDS | 45.0% | |
CATGACATTTCAACCGAGGA+AGG | - | chr7.3:7509728-7509747 | MS.gene25215:intron | 45.0% | |
CTTTGACTAAGCTCTTCAGC+AGG | + | chr7.3:7509578-7509597 | None:intergenic | 45.0% | |
GACCAAGCAGCAACATACTA+CGG | - | chr7.3:7510422-7510441 | MS.gene25215:CDS | 45.0% | |
GAGATCGCAGAAGCAGATAT+TGG | - | chr7.3:7509956-7509975 | MS.gene25215:intron | 45.0% | |
GGTGAAAAATATGTCTCGGG+AGG | - | chr7.3:7509610-7509629 | MS.gene25215:intron | 45.0% | |
GTAGATGGACCTGTTGATGT+TGG | - | chr7.3:7507970-7507989 | MS.gene25215:CDS | 45.0% | |
GTATTATAGGGAGTTCCCTC+TGG | + | chr7.3:7507931-7507950 | None:intergenic | 45.0% | |
GTCCTTCACGATACATAACG+CGG | + | chr7.3:7507909-7507928 | None:intergenic | 45.0% | |
GTGGAGGATTTAGCACATCA+AGG | - | chr7.3:7507638-7507657 | MS.gene25215:CDS | 45.0% | |
TATGTATCGTGAAGGACCAG+AGG | - | chr7.3:7507912-7507931 | MS.gene25215:CDS | 45.0% | |
TCAAGGCAACTTATTGGCAG+TGG | - | chr7.3:7509288-7509307 | MS.gene25215:intron | 45.0% | |
TGTGACTGACCAACATCAAC+AGG | + | chr7.3:7507982-7508001 | None:intergenic | 45.0% | |
TTCCGCGTTATGTATCGTGA+AGG | - | chr7.3:7507904-7507923 | MS.gene25215:CDS | 45.0% | |
! | GACAGCTTTATGCGTCTCAT+GGG | - | chr7.3:7508105-7508124 | MS.gene25215:CDS | 45.0% |
! | TATGTTGCTGCTTGGTCCTT+TGG | + | chr7.3:7510419-7510438 | None:intergenic | 45.0% |
! | TGACAGCTTTATGCGTCTCA+TGG | - | chr7.3:7508104-7508123 | MS.gene25215:CDS | 45.0% |
!! | GTGCTATTTGTTCTCCAGTC+TGG | + | chr7.3:7508464-7508483 | None:intergenic | 45.0% |
CCTATAACAACACCAAGGGC+TGG | + | chr7.3:7509409-7509428 | None:intergenic | 50.0% | |
CTCACAACACCCTTTGCTTC+AGG | + | chr7.3:7508876-7508895 | None:intergenic | 50.0% | |
GCTTCTGCAGATGAAAGTGG+AGG | - | chr7.3:7507622-7507641 | MS.gene25215:CDS | 50.0% | |
TCCATGGCCACTGTCTACAA+GGG | - | chr7.3:7508609-7508628 | MS.gene25215:intron | 50.0% | |
TCCCGTAGTATGTTGCTGCT+TGG | + | chr7.3:7510427-7510446 | None:intergenic | 50.0% | |
TGTTTGCAGAAGGTCCAGAC+TGG | - | chr7.3:7508447-7508466 | MS.gene25215:CDS | 50.0% | |
TTCTGACACTAACCAGCCCT+TGG | - | chr7.3:7509394-7509413 | MS.gene25215:intron | 50.0% | |
!! | CCAGCCCTTGGTGTTGTTAT+AGG | - | chr7.3:7509406-7509425 | MS.gene25215:intron | 50.0% |
ACAGCCTCCCTTGTAGACAG+TGG | + | chr7.3:7508619-7508638 | None:intergenic | 55.0% | |
ATGGCCACTGTCTACAAGGG+AGG | - | chr7.3:7508612-7508631 | MS.gene25215:intron | 55.0% | |
CGGCGACAAAGAATTCGGCA+AGG | - | chr7.3:7509448-7509467 | MS.gene25215:intron | 55.0% | |
CTCCATGGCCACTGTCTACA+AGG | - | chr7.3:7508608-7508627 | MS.gene25215:intron | 55.0% | |
CTTGTAGACAGTGGCCATGG+AGG | + | chr7.3:7508610-7508629 | None:intergenic | 55.0% | |
TCCCTTGTAGACAGTGGCCA+TGG | + | chr7.3:7508613-7508632 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 7507526 | 7510479 | 7507526 | ID=MS.gene25215 |
chr7.3 | mRNA | 7507526 | 7510479 | 7507526 | ID=MS.gene25215.t1;Parent=MS.gene25215 |
chr7.3 | exon | 7510333 | 7510479 | 7510333 | ID=MS.gene25215.t1.exon1;Parent=MS.gene25215.t1 |
chr7.3 | CDS | 7510333 | 7510479 | 7510333 | ID=cds.MS.gene25215.t1;Parent=MS.gene25215.t1 |
chr7.3 | exon | 7510014 | 7510122 | 7510014 | ID=MS.gene25215.t1.exon2;Parent=MS.gene25215.t1 |
chr7.3 | CDS | 7510014 | 7510122 | 7510014 | ID=cds.MS.gene25215.t1;Parent=MS.gene25215.t1 |
chr7.3 | exon | 7509856 | 7509895 | 7509856 | ID=MS.gene25215.t1.exon3;Parent=MS.gene25215.t1 |
chr7.3 | CDS | 7509856 | 7509895 | 7509856 | ID=cds.MS.gene25215.t1;Parent=MS.gene25215.t1 |
chr7.3 | exon | 7509515 | 7509604 | 7509515 | ID=MS.gene25215.t1.exon4;Parent=MS.gene25215.t1 |
chr7.3 | CDS | 7509515 | 7509604 | 7509515 | ID=cds.MS.gene25215.t1;Parent=MS.gene25215.t1 |
chr7.3 | exon | 7509306 | 7509405 | 7509306 | ID=MS.gene25215.t1.exon5;Parent=MS.gene25215.t1 |
chr7.3 | CDS | 7509306 | 7509405 | 7509306 | ID=cds.MS.gene25215.t1;Parent=MS.gene25215.t1 |
chr7.3 | exon | 7509050 | 7509189 | 7509050 | ID=MS.gene25215.t1.exon6;Parent=MS.gene25215.t1 |
chr7.3 | CDS | 7509050 | 7509189 | 7509050 | ID=cds.MS.gene25215.t1;Parent=MS.gene25215.t1 |
chr7.3 | exon | 7508676 | 7508778 | 7508676 | ID=MS.gene25215.t1.exon7;Parent=MS.gene25215.t1 |
chr7.3 | CDS | 7508676 | 7508778 | 7508676 | ID=cds.MS.gene25215.t1;Parent=MS.gene25215.t1 |
chr7.3 | exon | 7507526 | 7508577 | 7507526 | ID=MS.gene25215.t1.exon8;Parent=MS.gene25215.t1 |
chr7.3 | CDS | 7507526 | 7508577 | 7507526 | ID=cds.MS.gene25215.t1;Parent=MS.gene25215.t1 |
Gene Sequence |
Protein sequence |