Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28088.t1 | XP_013447005.1 | 69.5 | 269 | 31 | 5 | 1 | 244 | 55 | 297 | 6.00E-88 | 334 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28088.t1 | A0A072TUC9 | 69.5 | 269 | 31 | 5 | 1 | 244 | 55 | 297 | 4.3e-88 | 334.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene28088 | 0.817531 | 3.14E-52 | -1.69E-46 |
| MS.gene049232 | MS.gene28088 | 0.807355 | 5.26E-50 | -1.69E-46 |
| MS.gene049285 | MS.gene28088 | 0.810012 | 1.42E-50 | -1.69E-46 |
| MS.gene049320 | MS.gene28088 | 0.804445 | 2.15E-49 | -1.69E-46 |
| MS.gene049609 | MS.gene28088 | 0.823848 | 1.11E-53 | -1.69E-46 |
| MS.gene049805 | MS.gene28088 | 0.823234 | 1.55E-53 | -1.69E-46 |
| MS.gene05010 | MS.gene28088 | 0.813588 | 2.37E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene28088 | 0.80655 | 7.79E-50 | -1.69E-46 |
| MS.gene050323 | MS.gene28088 | 0.822554 | 2.23E-53 | -1.69E-46 |
| MS.gene050496 | MS.gene28088 | 0.804313 | 2.29E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene28088 | 0.824403 | 8.23E-54 | -1.69E-46 |
| MS.gene050772 | MS.gene28088 | 0.848899 | 4.57E-60 | -1.69E-46 |
| MS.gene050868 | MS.gene28088 | 0.815718 | 8.01E-52 | -1.69E-46 |
| MS.gene050871 | MS.gene28088 | 0.813109 | 3.02E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene28088 | 0.819436 | 1.16E-52 | -1.69E-46 |
| MS.gene052164 | MS.gene28088 | 0.801243 | 9.87E-49 | -1.69E-46 |
| MS.gene052503 | MS.gene28088 | 0.806437 | 8.23E-50 | -1.69E-46 |
| MS.gene052504 | MS.gene28088 | 0.833414 | 5.41E-56 | -1.69E-46 |
| MS.gene052506 | MS.gene28088 | 0.841597 | 4.32E-58 | -1.69E-46 |
| MS.gene052615 | MS.gene28088 | 0.807065 | 6.06E-50 | -1.69E-46 |
| MS.gene052820 | MS.gene28088 | 0.824004 | 1.02E-53 | -1.69E-46 |
| MS.gene052822 | MS.gene28088 | 0.84578 | 3.28E-59 | -1.69E-46 |
| MS.gene052823 | MS.gene28088 | 0.80408 | 2.56E-49 | -1.69E-46 |
| MS.gene052825 | MS.gene28088 | 0.800122 | 1.67E-48 | -1.69E-46 |
| MS.gene052916 | MS.gene28088 | 0.806637 | 7.47E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene28088 | 0.848186 | 7.19E-60 | -1.69E-46 |
| MS.gene053213 | MS.gene28088 | 0.829694 | 4.46E-55 | -1.69E-46 |
| MS.gene053286 | MS.gene28088 | 0.82484 | 6.49E-54 | -1.69E-46 |
| MS.gene053574 | MS.gene28088 | 0.829978 | 3.80E-55 | -1.69E-46 |
| MS.gene053626 | MS.gene28088 | 0.802812 | 4.70E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene28088 | 0.829454 | 5.10E-55 | -1.69E-46 |
| MS.gene054954 | MS.gene28088 | 0.808519 | 2.98E-50 | -1.69E-46 |
| MS.gene055362 | MS.gene28088 | 0.823257 | 1.53E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene28088 | 0.803772 | 2.97E-49 | -1.69E-46 |
| MS.gene055577 | MS.gene28088 | 0.816889 | 4.38E-52 | -1.69E-46 |
| MS.gene055722 | MS.gene28088 | 0.830695 | 2.54E-55 | -1.69E-46 |
| MS.gene056046 | MS.gene28088 | 0.806325 | 8.69E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene28088 | 0.826944 | 2.05E-54 | -1.69E-46 |
| MS.gene056510 | MS.gene28088 | 0.819367 | 1.21E-52 | -1.69E-46 |
| MS.gene056657 | MS.gene28088 | 0.809855 | 1.54E-50 | -1.69E-46 |
| MS.gene056878 | MS.gene28088 | 0.805813 | 1.11E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene28088 | 0.812565 | 3.98E-51 | -1.69E-46 |
| MS.gene057856 | MS.gene28088 | 0.814934 | 1.20E-51 | -1.69E-46 |
| MS.gene057857 | MS.gene28088 | 0.812452 | 4.21E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene28088 | 0.81415 | 1.78E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene28088 | 0.807277 | 5.47E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene28088 | 0.808908 | 2.46E-50 | -1.69E-46 |
| MS.gene059718 | MS.gene28088 | 0.819815 | 9.53E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene28088 | 0.821324 | 4.29E-53 | -1.69E-46 |
| MS.gene060482 | MS.gene28088 | 0.829957 | 3.85E-55 | -1.69E-46 |
| MS.gene060762 | MS.gene28088 | 0.81396 | 1.96E-51 | -1.69E-46 |
| MS.gene06077 | MS.gene28088 | 0.809811 | 1.57E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene28088 | 0.817197 | 3.74E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28088.t1 | MTR_8g096960 | 69.517 | 269 | 31 | 5 | 1 | 244 | 55 | 297 | 6.70e-114 | 328 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28088.t1 | AT2G32500 | 46.565 | 262 | 98 | 3 | 3 | 244 | 37 | 276 | 3.46e-79 | 239 |
| MS.gene28088.t1 | AT2G32500 | 57.534 | 146 | 46 | 1 | 3 | 148 | 37 | 166 | 9.91e-55 | 175 |
Find 47 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACGGACCTTTACTGATTT+TGG | 0.106637 | 4.4:+10587334 | MS.gene28088:CDS |
| TCCTTACATCTTTATATTCT+TGG | 0.165785 | 4.4:-10588177 | None:intergenic |
| TTTCTCATTAAATGAAATTA+AGG | 0.202402 | 4.4:-10587628 | None:intergenic |
| TAATACCACCCATTTGATAT+TGG | 0.215952 | 4.4:-10586521 | None:intergenic |
| AATGAAGAGACAGTGATTTC+AGG | 0.265594 | 4.4:-10588619 | None:intergenic |
| CTTGAGAACCTTCAAGTAAA+AGG | 0.266883 | 4.4:-10587205 | None:intergenic |
| GGTATTATTGCTATTTCATT+AGG | 0.307379 | 4.4:+10586537 | MS.gene28088:CDS |
| AATACCACCCATTTGATATT+GGG | 0.311535 | 4.4:-10586520 | None:intergenic |
| TTTCCTCTGATAAGCGAGAT+TGG | 0.384256 | 4.4:-10586292 | None:intergenic |
| GATAAGCGAGATTGGAGCTT+TGG | 0.414590 | 4.4:-10586284 | None:intergenic |
| GTACACAACCCAATATCAAA+TGG | 0.421767 | 4.4:+10586512 | MS.gene28088:CDS |
| GACAGTGATTTCAGGACAAT+AGG | 0.441297 | 4.4:-10588611 | None:intergenic |
| CATTTCTCTGTTGATCCAGT+GGG | 0.450126 | 4.4:+10588638 | MS.gene28088:CDS |
| ATCTCGCTTATCAGAGGAAA+AGG | 0.455399 | 4.4:+10586295 | MS.gene28088:CDS |
| TCATTTCTCTGTTGATCCAG+TGG | 0.484155 | 4.4:+10588637 | MS.gene28088:CDS |
| TTTACATGTTGGTGCATACA+TGG | 0.488043 | 4.4:-10587248 | None:intergenic |
| GTAATAGATCCCACATTAAG+TGG | 0.492120 | 4.4:-10587590 | None:intergenic |
| TACACAACCCAATATCAAAT+GGG | 0.498209 | 4.4:+10586513 | MS.gene28088:CDS |
| TCCGTGTCAAAACGTTCATA+AGG | 0.508554 | 4.4:-10587318 | None:intergenic |
| ACAGCATGAGTATAGTGGTC+AGG | 0.516130 | 4.4:-10587132 | None:intergenic |
| TACATAAGCTCGGTTCCCAC+TGG | 0.518561 | 4.4:-10588653 | None:intergenic |
| TGTAAACAGCATGAGTATAG+TGG | 0.519619 | 4.4:-10587137 | None:intergenic |
| TGGGATCTATTACAAAGTGT+GGG | 0.529495 | 4.4:+10587600 | MS.gene28088:CDS |
| CTACTCCATGAGTATACTCC+TGG | 0.538053 | 4.4:-10588017 | None:intergenic |
| GTGGGATCTATTACAAAGTG+TGG | 0.539295 | 4.4:+10587599 | MS.gene28088:CDS |
| GTGGATCCCACCACTTAATG+TGG | 0.540812 | 4.4:+10587580 | MS.gene28088:CDS |
| AAAGTAGTGTTGTTAAATAG+CGG | 0.552618 | 4.4:-10587979 | None:intergenic |
| TGTCGCCAGGAGTATACTCA+TGG | 0.554151 | 4.4:+10588012 | MS.gene28088:CDS |
| TTCATGTAGAAGAAAAGTTG+TGG | 0.555269 | 4.4:+10586419 | MS.gene28088:intron |
| AAAGGAGAAATTATCTGAAG+AGG | 0.557579 | 4.4:+10586464 | MS.gene28088:CDS |
| GTGATTTCAGGACAATAGGC+TGG | 0.558184 | 4.4:-10588607 | None:intergenic |
| AATTAATCCAAAATCAGTAA+AGG | 0.560345 | 4.4:-10587341 | None:intergenic |
| GTAGTGATACGATTTCGATC+AGG | 0.566672 | 4.4:+10588036 | MS.gene28088:CDS |
| ATACTCATGCTGTTTACATG+CGG | 0.603282 | 4.4:+10587142 | MS.gene28088:CDS |
| TAGATCCCACATTAAGTGGT+GGG | 0.605992 | 4.4:-10587586 | None:intergenic |
| TTATCCTCACTACATAAGCT+CGG | 0.606028 | 4.4:-10588663 | None:intergenic |
| CATTTGTCTGCTCAAAGCAA+AGG | 0.608614 | 4.4:+10586446 | MS.gene28088:CDS |
| ATGATTTATATATTTCACAA+AGG | 0.621324 | 4.4:+10587397 | MS.gene28088:CDS |
| GCTCCAATCTCGCTTATCAG+AGG | 0.623806 | 4.4:+10586289 | MS.gene28088:CDS |
| TTATATATTTCACAAAGGAG+AGG | 0.623975 | 4.4:+10587402 | MS.gene28088:CDS |
| ATAGATCCCACATTAAGTGG+TGG | 0.633275 | 4.4:-10587587 | None:intergenic |
| TGGATCCCACCACTTAATGT+GGG | 0.643474 | 4.4:+10587581 | MS.gene28088:CDS |
| GTGTCAAAACGTTCATAAGG+AGG | 0.646664 | 4.4:-10587315 | None:intergenic |
| ACAACCCAATATCAAATGGG+TGG | 0.673588 | 4.4:+10586516 | MS.gene28088:CDS |
| GGGATCTATTACAAAGTGTG+GGG | 0.683110 | 4.4:+10587601 | MS.gene28088:CDS |
| GCTGCGTATAAATATCTCGA+AGG | 0.686766 | 4.4:-10588155 | None:intergenic |
| TTCATTGGATGAGATCAATG+TGG | 0.704567 | 4.4:+10587561 | MS.gene28088:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAACTAAACTATATT+TGG | + | chr4.4:10588554-10588573 | MS.gene28088:intron | 10.0% |
| !!! | TATTTCAGTTTTTTTTTTTA+AGG | - | chr4.4:10588492-10588511 | None:intergenic | 10.0% |
| !! | ATGATTTATATATTTCACAA+AGG | + | chr4.4:10587397-10587416 | MS.gene28088:CDS | 15.0% |
| !! | TAATAATGTTATTACGTATT+AGG | + | chr4.4:10586336-10586355 | MS.gene28088:intron | 15.0% |
| !! | TTTCTCATTAAATGAAATTA+AGG | - | chr4.4:10587631-10587650 | None:intergenic | 15.0% |
| !!! | TAAAACATTATTTTATGCTT+AGG | + | chr4.4:10588222-10588241 | MS.gene28088:intron | 15.0% |
| !!! | TATCTATTTTTTTCAACATT+AGG | + | chr4.4:10586926-10586945 | MS.gene28088:intron | 15.0% |
| !! | AACTAAACTATATTTGGATT+TGG | + | chr4.4:10588560-10588579 | MS.gene28088:intron | 20.0% |
| !! | AATCATAATGACATGAAAAA+TGG | - | chr4.4:10586372-10586391 | None:intergenic | 20.0% |
| !! | AATTAATCCAAAATCAGTAA+AGG | - | chr4.4:10587344-10587363 | None:intergenic | 20.0% |
| !! | TAAGAGTAACAGAAAAATAA+AGG | - | chr4.4:10587289-10587308 | None:intergenic | 20.0% |
| !! | TGTAAAATGTATTTATCTAC+AGG | - | chr4.4:10588452-10588471 | None:intergenic | 20.0% |
| !!! | AAATTTAAGTTAGTTTAACC+AGG | + | chr4.4:10586562-10586581 | MS.gene28088:intron | 20.0% |
| !!! | ACAACATTTACTTTGTTATT+AGG | + | chr4.4:10586621-10586640 | MS.gene28088:intron | 20.0% |
| !!! | ACAAGGTTAGTTTAATATTT+AGG | + | chr4.4:10586802-10586821 | MS.gene28088:intron | 20.0% |
| !!! | ATTAAACTAACCTTGTTTTT+TGG | - | chr4.4:10586798-10586817 | None:intergenic | 20.0% |
| !!! | TGATTTTGGATTAATTAATG+TGG | + | chr4.4:10587348-10587367 | MS.gene28088:CDS | 20.0% |
| ! | AAAATAAAGGAAAAGAGAGT+CGG | - | chr4.4:10587276-10587295 | None:intergenic | 25.0% |
| ! | ACACTCAAACACATTAAATT+GGG | + | chr4.4:10586663-10586682 | MS.gene28088:intron | 25.0% |
| ! | ATAACTCAGGATATTTGTTT+GGG | + | chr4.4:10588285-10588304 | MS.gene28088:intron | 25.0% |
| ! | ATCCTGAGTTATATAGTTTA+CGG | - | chr4.4:10588277-10588296 | None:intergenic | 25.0% |
| ! | ATTCTAGATGAAATTCATGT+GGG | - | chr4.4:10586709-10586728 | None:intergenic | 25.0% |
| ! | TATAACTCAGGATATTTGTT+TGG | + | chr4.4:10588284-10588303 | MS.gene28088:intron | 25.0% |
| ! | TCCTTACATCTTTATATTCT+TGG | - | chr4.4:10588180-10588199 | None:intergenic | 25.0% |
| ! | TTATATATTTCACAAAGGAG+AGG | + | chr4.4:10587402-10587421 | MS.gene28088:CDS | 25.0% |
| !! | AAAGTAGTGTTGTTAAATAG+CGG | - | chr4.4:10587982-10588001 | None:intergenic | 25.0% |
| !! | AGTTTTCATAGAACTTTTCA+AGG | - | chr4.4:10587185-10587204 | None:intergenic | 25.0% |
| !! | TATATTTGGATTTGGTAAAC+AGG | + | chr4.4:10588568-10588587 | MS.gene28088:intron | 25.0% |
| !!! | GGTATTATTGCTATTTCATT+AGG | + | chr4.4:10586537-10586556 | MS.gene28088:CDS | 25.0% |
| AAAGGAGAAATTATCTGAAG+AGG | + | chr4.4:10586464-10586483 | MS.gene28088:CDS | 30.0% | |
| AATACCACCCATTTGATATT+GGG | - | chr4.4:10586523-10586542 | None:intergenic | 30.0% | |
| ATCCTAAGACTGAAGTATAT+AGG | - | chr4.4:10587781-10587800 | None:intergenic | 30.0% | |
| CAATTCATATTTGACCATAG+AGG | + | chr4.4:10587490-10587509 | MS.gene28088:intron | 30.0% | |
| CACACTCAAACACATTAAAT+TGG | + | chr4.4:10586662-10586681 | MS.gene28088:intron | 30.0% | |
| CATTCTAGATGAAATTCATG+TGG | - | chr4.4:10586710-10586729 | None:intergenic | 30.0% | |
| CCATCTATTACCAAAAAACA+AGG | + | chr4.4:10586785-10586804 | MS.gene28088:intron | 30.0% | |
| GATCCAGAAAGAACAAAAAA+AGG | + | chr4.4:10587017-10587036 | MS.gene28088:intron | 30.0% | |
| GCCAAGAATATAAAGATGTA+AGG | + | chr4.4:10588176-10588195 | MS.gene28088:intron | 30.0% | |
| TAACTCAGGATATTTGTTTG+GGG | + | chr4.4:10588286-10588305 | MS.gene28088:intron | 30.0% | |
| TAATACCACCCATTTGATAT+TGG | - | chr4.4:10586524-10586543 | None:intergenic | 30.0% | |
| TACACAACCCAATATCAAAT+GGG | + | chr4.4:10586513-10586532 | MS.gene28088:CDS | 30.0% | |
| TCAATTTATCGATCCATAAG+AGG | - | chr4.4:10587447-10587466 | None:intergenic | 30.0% | |
| TCCTGAGTTATATAGTTTAC+GGG | - | chr4.4:10588276-10588295 | None:intergenic | 30.0% | |
| TTCATGTAGAAGAAAAGTTG+TGG | + | chr4.4:10586419-10586438 | MS.gene28088:intron | 30.0% | |
| TTCCTATATACTTCAGTCTT+AGG | + | chr4.4:10587776-10587795 | MS.gene28088:intron | 30.0% | |
| ! | TGAAAACTCCTTTTACTTGA+AGG | + | chr4.4:10587197-10587216 | MS.gene28088:CDS | 30.0% |
| ! | TTTAAATGAATTTTGTCGCC+AGG | + | chr4.4:10587999-10588018 | MS.gene28088:CDS | 30.0% |
| !! | CTGATTTACTTTTCCTCTTA+TGG | + | chr4.4:10587431-10587450 | MS.gene28088:intron | 30.0% |
| !!! | CCTTGTTTTTTGGTAATAGA+TGG | - | chr4.4:10586788-10586807 | None:intergenic | 30.0% |
| !!! | GATTTTTTTTCCTCCCAATT+TGG | + | chr4.4:10588085-10588104 | MS.gene28088:intron | 30.0% |
| !!! | TAGCCTTTTTTTGTTCTTTC+TGG | - | chr4.4:10587023-10587042 | None:intergenic | 30.0% |
| AAAATGAACATAGTTGCTCC+TGG | + | chr4.4:10587739-10587758 | MS.gene28088:intron | 35.0% | |
| AAATGAACATAGTTGCTCCT+GGG | + | chr4.4:10587740-10587759 | MS.gene28088:intron | 35.0% | |
| AATGAAGAGACAGTGATTTC+AGG | - | chr4.4:10588622-10588641 | None:intergenic | 35.0% | |
| ATCATGCTATCATTTCCTCT+TGG | + | chr4.4:10588309-10588328 | MS.gene28088:intron | 35.0% | |
| ATGATGTCATACACCAGAAT+GGG | - | chr4.4:10588120-10588139 | None:intergenic | 35.0% | |
| CAGATATAAACCGTGAGATT+GGG | - | chr4.4:10588066-10588085 | None:intergenic | 35.0% | |
| CTTGAGAACCTTCAAGTAAA+AGG | - | chr4.4:10587208-10587227 | None:intergenic | 35.0% | |
| GTAATAGATCCCACATTAAG+TGG | - | chr4.4:10587593-10587612 | None:intergenic | 35.0% | |
| GTACACAACCCAATATCAAA+TGG | + | chr4.4:10586512-10586531 | MS.gene28088:CDS | 35.0% | |
| TCAGATATAAACCGTGAGAT+TGG | - | chr4.4:10588067-10588086 | None:intergenic | 35.0% | |
| TCCCGTAAACTATATAACTC+AGG | + | chr4.4:10588272-10588291 | MS.gene28088:intron | 35.0% | |
| TGGGATCTATTACAAAGTGT+GGG | + | chr4.4:10587600-10587619 | MS.gene28088:CDS | 35.0% | |
| TGTAAACAGCATGAGTATAG+TGG | - | chr4.4:10587140-10587159 | None:intergenic | 35.0% | |
| TGTGTTCGACATGTTACATT+TGG | - | chr4.4:10586836-10586855 | None:intergenic | 35.0% | |
| TTAGTACTCACTCTCTTCAT+TGG | + | chr4.4:10587546-10587565 | MS.gene28088:intron | 35.0% | |
| TTCATTGGATGAGATCAATG+TGG | + | chr4.4:10587561-10587580 | MS.gene28088:intron | 35.0% | |
| TTGACTAATAGCAGCTATAG+TGG | - | chr4.4:10587877-10587896 | None:intergenic | 35.0% | |
| TTTACATGTTGGTGCATACA+TGG | - | chr4.4:10587251-10587270 | None:intergenic | 35.0% | |
| ! | ATACTCATGCTGTTTACATG+CGG | + | chr4.4:10587142-10587161 | MS.gene28088:CDS | 35.0% |
| ! | CTTTTACTTGAAGGTTCTCA+AGG | + | chr4.4:10587206-10587225 | MS.gene28088:CDS | 35.0% |
| ! | GTGATTTGTACAAATTCCAG+TGG | + | chr4.4:10587930-10587949 | MS.gene28088:intron | 35.0% |
| ! | TTGGATTTGGTAAACAGGTA+TGG | + | chr4.4:10588573-10588592 | MS.gene28088:intron | 35.0% |
| !! | GAATTGTGTCATTTACCAAG+AGG | - | chr4.4:10588327-10588346 | None:intergenic | 35.0% |
| !! | GAGAGTGTTTATAATACTCC+TGG | - | chr4.4:10586583-10586602 | None:intergenic | 35.0% |
| !! | TCCTTATGAACGTTTTGACA+CGG | + | chr4.4:10587317-10587336 | MS.gene28088:CDS | 35.0% |
| !! | TGCTTAGGTAGCTTGTTAAA+TGG | + | chr4.4:10588237-10588256 | MS.gene28088:intron | 35.0% |
| ACAACCCAATATCAAATGGG+TGG | + | chr4.4:10586516-10586535 | MS.gene28088:CDS | 40.0% | |
| ACCACTAATCGCTGAAAAAG+TGG | + | chr4.4:10587814-10587833 | MS.gene28088:intron | 40.0% | |
| ATAGATCCCACATTAAGTGG+TGG | - | chr4.4:10587590-10587609 | None:intergenic | 40.0% | |
| ATCTCGCTTATCAGAGGAAA+AGG | + | chr4.4:10586295-10586314 | MS.gene28088:CDS | 40.0% | |
| CATTTCTCTGTTGATCCAGT+GGG | + | chr4.4:10588638-10588657 | MS.gene28088:CDS | 40.0% | |
| CATTTGTCTGCTCAAAGCAA+AGG | + | chr4.4:10586446-10586465 | MS.gene28088:CDS | 40.0% | |
| GACAGTGATTTCAGGACAAT+AGG | - | chr4.4:10588614-10588633 | None:intergenic | 40.0% | |
| GATGATGTCATACACCAGAA+TGG | - | chr4.4:10588121-10588140 | None:intergenic | 40.0% | |
| GCTGCGTATAAATATCTCGA+AGG | - | chr4.4:10588158-10588177 | None:intergenic | 40.0% | |
| GGAATAAATACCTAGAACCC+AGG | - | chr4.4:10587760-10587779 | None:intergenic | 40.0% | |
| GGGATCTATTACAAAGTGTG+GGG | + | chr4.4:10587601-10587620 | MS.gene28088:CDS | 40.0% | |
| GTAGTGATACGATTTCGATC+AGG | + | chr4.4:10588036-10588055 | MS.gene28088:CDS | 40.0% | |
| GTGGGATCTATTACAAAGTG+TGG | + | chr4.4:10587599-10587618 | MS.gene28088:CDS | 40.0% | |
| GTGTCAAAACGTTCATAAGG+AGG | - | chr4.4:10587318-10587337 | None:intergenic | 40.0% | |
| TAGATCCCACATTAAGTGGT+GGG | - | chr4.4:10587589-10587608 | None:intergenic | 40.0% | |
| TATCTATCAGCAGAGAAGAG+AGG | - | chr4.4:10586878-10586897 | None:intergenic | 40.0% | |
| TCATTTCTCTGTTGATCCAG+TGG | + | chr4.4:10588637-10588656 | MS.gene28088:CDS | 40.0% | |
| TCCGTGTCAAAACGTTCATA+AGG | - | chr4.4:10587321-10587340 | None:intergenic | 40.0% | |
| TTGTTAAATAGCGGCTACAG+CGG | - | chr4.4:10587973-10587992 | None:intergenic | 40.0% | |
| TTTCCTCTGATAAGCGAGAT+TGG | - | chr4.4:10586295-10586314 | None:intergenic | 40.0% | |
| ! | ATTTTGCTAGCACTCCTCTA+TGG | - | chr4.4:10587507-10587526 | None:intergenic | 40.0% |
| !! | ATGGGTTAGCACAACCAAAT+TGG | - | chr4.4:10588102-10588121 | None:intergenic | 40.0% |
| !! | TGGGTTAGCACAACCAAATT+GGG | - | chr4.4:10588101-10588120 | None:intergenic | 40.0% |
| !!! | ACACGGACCTTTACTGATTT+TGG | + | chr4.4:10587334-10587353 | MS.gene28088:CDS | 40.0% |
| !!! | ACCACTTTTTCAGCGATTAG+TGG | - | chr4.4:10587818-10587837 | None:intergenic | 40.0% |
| ACAGCATGAGTATAGTGGTC+AGG | - | chr4.4:10587135-10587154 | None:intergenic | 45.0% | |
| ACTCACACGTACCAATCACT+TGG | + | chr4.4:10586979-10586998 | MS.gene28088:intron | 45.0% | |
| ATCAGGTGATCCCAATCTCA+CGG | + | chr4.4:10588053-10588072 | MS.gene28088:intron | 45.0% | |
| CTACTCCATGAGTATACTCC+TGG | - | chr4.4:10588020-10588039 | None:intergenic | 45.0% | |
| CTCACACGTACCAATCACTT+GGG | + | chr4.4:10586980-10586999 | MS.gene28088:intron | 45.0% | |
| CTCTCATGTTCCCAAGTGAT+TGG | - | chr4.4:10586993-10587012 | None:intergenic | 45.0% | |
| CTTCTTTGGCCATAACCTAG+GGG | + | chr4.4:10587682-10587701 | MS.gene28088:intron | 45.0% | |
| GACATCATCTTCTGCAGTTG+AGG | + | chr4.4:10588132-10588151 | MS.gene28088:intron | 45.0% | |
| GATAAGCGAGATTGGAGCTT+TGG | - | chr4.4:10586287-10586306 | None:intergenic | 45.0% | |
| GCTTCTTTGGCCATAACCTA+GGG | + | chr4.4:10587681-10587700 | MS.gene28088:intron | 45.0% | |
| GGTATAATGCTACAGTCCAC+TGG | - | chr4.4:10587949-10587968 | None:intergenic | 45.0% | |
| GTGATTTCAGGACAATAGGC+TGG | - | chr4.4:10588610-10588629 | None:intergenic | 45.0% | |
| GTTAGCACAACCAAATTGGG+AGG | - | chr4.4:10588098-10588117 | None:intergenic | 45.0% | |
| TGGATCCCACCACTTAATGT+GGG | + | chr4.4:10587581-10587600 | MS.gene28088:CDS | 45.0% | |
| TTGGTTGTGCTAACCCATTC+TGG | + | chr4.4:10588104-10588123 | MS.gene28088:intron | 45.0% | |
| ! | GAGAGTCGGTGTTTACATGT+TGG | - | chr4.4:10587262-10587281 | None:intergenic | 45.0% |
| AATCTGCTGCCCCTAGGTTA+TGG | - | chr4.4:10587694-10587713 | None:intergenic | 50.0% | |
| ACGTAAAATCTGCTGCCCCT+AGG | - | chr4.4:10587700-10587719 | None:intergenic | 50.0% | |
| AGCAGCTATAGTGGCGCAAT+AGG | - | chr4.4:10587868-10587887 | None:intergenic | 50.0% | |
| CAGTTGCTAGCACGCTTCTT+TGG | + | chr4.4:10587668-10587687 | MS.gene28088:intron | 50.0% | |
| CATAGTTGCTCCTGGGTTCT+AGG | + | chr4.4:10587747-10587766 | MS.gene28088:intron | 50.0% | |
| CGCTTCTTTGGCCATAACCT+AGG | + | chr4.4:10587680-10587699 | MS.gene28088:intron | 50.0% | |
| CTAGCTTATGTGCTCCTGCA+GGG | + | chr4.4:10587091-10587110 | MS.gene28088:intron | 50.0% | |
| GCTCCAATCTCGCTTATCAG+AGG | + | chr4.4:10586289-10586308 | MS.gene28088:CDS | 50.0% | |
| GTGGATCCCACCACTTAATG+TGG | + | chr4.4:10587580-10587599 | MS.gene28088:CDS | 50.0% | |
| TACATAAGCTCGGTTCCCAC+TGG | - | chr4.4:10588656-10588675 | None:intergenic | 50.0% | |
| TTAAATAGCGGCTACAGCGG+TGG | - | chr4.4:10587970-10587989 | None:intergenic | 50.0% | |
| ! | TCTAGCTTATGTGCTCCTGC+AGG | + | chr4.4:10587090-10587109 | MS.gene28088:intron | 50.0% |
| ! | TGTCGCCAGGAGTATACTCA+TGG | + | chr4.4:10588012-10588031 | MS.gene28088:CDS | 50.0% |
| TGAGCAGAAACAAGCCCTGC+AGG | - | chr4.4:10587108-10587127 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 10586258 | 10588676 | 10586258 | ID=MS.gene28088 |
| chr4.4 | mRNA | 10586258 | 10588676 | 10586258 | ID=MS.gene28088.t1;Parent=MS.gene28088 |
| chr4.4 | exon | 10586258 | 10586316 | 10586258 | ID=MS.gene28088.t1.exon1;Parent=MS.gene28088.t1 |
| chr4.4 | CDS | 10586258 | 10586316 | 10586258 | ID=cds.MS.gene28088.t1;Parent=MS.gene28088.t1 |
| chr4.4 | exon | 10586431 | 10586558 | 10586431 | ID=MS.gene28088.t1.exon2;Parent=MS.gene28088.t1 |
| chr4.4 | CDS | 10586431 | 10586558 | 10586431 | ID=cds.MS.gene28088.t1;Parent=MS.gene28088.t1 |
| chr4.4 | exon | 10587112 | 10587255 | 10587112 | ID=MS.gene28088.t1.exon3;Parent=MS.gene28088.t1 |
| chr4.4 | CDS | 10587112 | 10587255 | 10587112 | ID=cds.MS.gene28088.t1;Parent=MS.gene28088.t1 |
| chr4.4 | exon | 10587311 | 10587427 | 10587311 | ID=MS.gene28088.t1.exon4;Parent=MS.gene28088.t1 |
| chr4.4 | CDS | 10587311 | 10587427 | 10587311 | ID=cds.MS.gene28088.t1;Parent=MS.gene28088.t1 |
| chr4.4 | exon | 10587574 | 10587650 | 10587574 | ID=MS.gene28088.t1.exon5;Parent=MS.gene28088.t1 |
| chr4.4 | CDS | 10587574 | 10587650 | 10587574 | ID=cds.MS.gene28088.t1;Parent=MS.gene28088.t1 |
| chr4.4 | exon | 10587979 | 10588057 | 10587979 | ID=MS.gene28088.t1.exon6;Parent=MS.gene28088.t1 |
| chr4.4 | CDS | 10587979 | 10588057 | 10587979 | ID=cds.MS.gene28088.t1;Parent=MS.gene28088.t1 |
| chr4.4 | exon | 10588149 | 10588192 | 10588149 | ID=MS.gene28088.t1.exon7;Parent=MS.gene28088.t1 |
| chr4.4 | CDS | 10588149 | 10588192 | 10588149 | ID=cds.MS.gene28088.t1;Parent=MS.gene28088.t1 |
| chr4.4 | exon | 10588590 | 10588676 | 10588590 | ID=MS.gene28088.t1.exon8;Parent=MS.gene28088.t1 |
| chr4.4 | CDS | 10588590 | 10588676 | 10588590 | ID=cds.MS.gene28088.t1;Parent=MS.gene28088.t1 |
| Gene Sequence |
| Protein sequence |
