AlfalfaGEDB | MS.gene28798

M. sativa cultivar XinJiangDaYe / MS.gene28798

KEGG: K09517
GO: GO:0003674 GO:0005488 GO:0005515 GO:0006457 GO:0008150 GO:0009987 GO:0051082
PFAM: PF00226.34 PF01556.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28798.t1	XP_003625951.1	96.7	335	9	1	1	333	1	335	2.50E-161	578.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28798.t1	B9FHF3	81.4	318	55	1	11	324	10	327	1.8e-128	460.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28798.t1	G7KSR8	96.7	335	9	1	1	333	1	335	1.8e-161	578.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049178	MS.gene28798	0.804381	2.22E-49	-1.69E-46
MS.gene049264	MS.gene28798	0.827405	1.59E-54	-1.69E-46
MS.gene049567	MS.gene28798	0.827581	1.45E-54	-1.69E-46
MS.gene050439	MS.gene28798	0.808719	2.70E-50	-1.69E-46
MS.gene050780	MS.gene28798	0.833896	4.10E-56	-1.69E-46
MS.gene051120	MS.gene28798	0.81855	1.85E-52	-1.69E-46
MS.gene051490	MS.gene28798	0.855255	7.13E-62	-1.69E-46
MS.gene051744	MS.gene28798	0.86094	1.46E-63	-1.69E-46
MS.gene051831	MS.gene28798	0.807528	4.84E-50	-1.69E-46
MS.gene051832	MS.gene28798	0.821412	4.09E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene28798	MS.gene35518	PPI
MS.gene28798	MS.gene034372	PPI
MS.gene28798	MS.gene059290	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28798.t1	MTR_7g109340	96.716	335	9	1	1	333	1	335	0.0	672
MS.gene28798.t1	MTR_8g006430	37.879	330	168	9	27	323	15	340	3.11e-52	178
MS.gene28798.t1	MTR_4g078850	35.604	323	178	7	27	323	5	323	1.54e-46	161
MS.gene28798.t1	MTR_3g108020	33.225	307	191	7	27	324	5	306	5.33e-46	159
MS.gene28798.t1	MTR_4g015840	36.223	323	171	8	27	323	5	318	7.64e-46	159
MS.gene28798.t1	MTR_2g014470	33.962	318	185	8	27	323	5	318	1.43e-43	153
MS.gene28798.t1	MTR_2g090705	34.268	321	176	9	27	323	5	314	4.10e-42	149
MS.gene28798.t1	MTR_4g050420	36.391	327	174	7	27	323	14	336	2.94e-39	143
MS.gene28798.t1	MTR_2g087660	34.132	334	174	9	27	323	14	338	1.70e-38	141
MS.gene28798.t1	MTR_2g087660	34.839	310	155	8	27	302	14	310	3.34e-35	130

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28798.t1	AT3G62600	79.205	327	64	2	1	324	1	326	0.0	527
MS.gene28798.t1	AT3G08910	36.306	314	165	8	27	323	5	300	8.81e-50	169
MS.gene28798.t1	AT5G01390	34.268	321	175	8	27	323	5	313	1.87e-49	168
MS.gene28798.t1	AT2G20560	33.956	321	179	7	27	323	5	316	2.33e-47	163
MS.gene28798.t1	AT5G25530	34.375	320	182	9	27	324	5	318	1.30e-46	161
MS.gene28798.t1	AT5G25530	33.537	328	182	10	27	324	5	326	6.83e-44	154
MS.gene28798.t1	AT5G22060	36.858	331	169	11	27	323	15	339	1.19e-43	155
MS.gene28798.t1	AT1G59725	31.471	340	156	8	27	324	5	309	2.06e-40	144
MS.gene28798.t1	AT1G10350	32.012	328	188	6	27	324	5	327	4.28e-40	144
MS.gene28798.t1	AT4G28480	32.776	299	165	6	27	323	5	269	4.89e-39	140

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Find 77 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTCATGAGGTGCGGTG+CGG	0.717597	7.4:+6051169	None:intergenic
AAATTTGCGGAGATTAGCAA+TGG	0.617908	7.4:-6055634	MS.gene28798:intron
AACCCTTGAAGATTTGTATA+TGG	0.319394	7.4:-6054559	MS.gene28798:CDS
AAGCAAGTAAGGAAGTTCAA+AGG	0.564203	7.4:-6050689	MS.gene28798:CDS
AAGCAGCATGCCGCTGGTGG+AGG	0.488986	7.4:-6055147	MS.gene28798:CDS
AATAGCATAGAGCACAGAGA+AGG	0.608834	7.4:+6055889	None:intergenic
AATGTCAAATACGTAAGGGA+GGG	0.618582	7.4:-6053447	MS.gene28798:CDS
AATGTTGTAAAGCCAGCTCC+TGG	0.471578	7.4:-6053868	MS.gene28798:CDS
AATGTTTCTTTCAGTTTCTT+TGG	0.228428	7.4:-6054651	MS.gene28798:intron
ACAGAGAAGGAACAACAATT+TGG	0.396887	7.4:+6055902	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATGGAAAATGGATCAA+GGG	+	chr7.4:6054754-6054773	None:intergenic	30.0%
AACCCTTGAAGATTTGTATA+TGG	-	chr7.4:6051679-6051698	MS.gene28798:intron	30.0%
AACTAAGAAGAACTGCTTTA+GGG	-	chr7.4:6052019-6052038	MS.gene28798:intron	30.0%
AATACAAAATCCCCCTAATT+TGG	-	chr7.4:6053946-6053965	MS.gene28798:intron	30.0%
AATATACTAGTAGATGGGTA+TGG	-	chr7.4:6051860-6051879	MS.gene28798:intron	30.0%
ACCCATATACAAATCTTCAA+GGG	+	chr7.4:6051684-6051703	None:intergenic	30.0%
ACCCTTGAAGATTTGTATAT+GGG	-	chr7.4:6051680-6051699	MS.gene28798:intron	30.0%
ACTTATTCGAAATTATCGAG+TGG	+	chr7.4:6050945-6050964	None:intergenic	30.0%
AGGGACAAAAGAAATATGTT+AGG	+	chr7.4:6055511-6055530	None:intergenic	30.0%
ATACAAAATCCCCCTAATTT+GGG	-	chr7.4:6053947-6053966	MS.gene28798:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	6050320	6055940	6050320	ID=MS.gene28798
chr7.4	mRNA	6050320	6055940	6050320	ID=MS.gene28798.t1;Parent=MS.gene28798
chr7.4	exon	6055870	6055940	6055870	ID=MS.gene28798.t1.exon1;Parent=MS.gene28798.t1
chr7.4	CDS	6055870	6055940	6055870	ID=cds.MS.gene28798.t1;Parent=MS.gene28798.t1
chr7.4	exon	6055635	6055783	6055635	ID=MS.gene28798.t1.exon2;Parent=MS.gene28798.t1
chr7.4	CDS	6055635	6055783	6055635	ID=cds.MS.gene28798.t1;Parent=MS.gene28798.t1
chr7.4	exon	6055108	6055234	6055108	ID=MS.gene28798.t1.exon3;Parent=MS.gene28798.t1
chr7.4	CDS	6055108	6055234	6055108	ID=cds.MS.gene28798.t1;Parent=MS.gene28798.t1
chr7.4	exon	6054545	6054659	6054545	ID=MS.gene28798.t1.exon4;Parent=MS.gene28798.t1
chr7.4	CDS	6054545	6054659	6054545	ID=cds.MS.gene28798.t1;Parent=MS.gene28798.t1
chr7.4	exon	6053789	6053905	6053789	ID=MS.gene28798.t1.exon5;Parent=MS.gene28798.t1
chr7.4	CDS	6053789	6053905	6053789	ID=cds.MS.gene28798.t1;Parent=MS.gene28798.t1
chr7.4	exon	6053401	6053487	6053401	ID=MS.gene28798.t1.exon6;Parent=MS.gene28798.t1
chr7.4	CDS	6053401	6053487	6053401	ID=cds.MS.gene28798.t1;Parent=MS.gene28798.t1
chr7.4	exon	6051293	6051352	6051293	ID=MS.gene28798.t1.exon7;Parent=MS.gene28798.t1
chr7.4	CDS	6051293	6051352	6051293	ID=cds.MS.gene28798.t1;Parent=MS.gene28798.t1
chr7.4	exon	6051122	6051199	6051122	ID=MS.gene28798.t1.exon8;Parent=MS.gene28798.t1
chr7.4	CDS	6051122	6051199	6051122	ID=cds.MS.gene28798.t1;Parent=MS.gene28798.t1
chr7.4	exon	6050825	6050896	6050825	ID=MS.gene28798.t1.exon9;Parent=MS.gene28798.t1
chr7.4	CDS	6050825	6050896	6050825	ID=cds.MS.gene28798.t1;Parent=MS.gene28798.t1
chr7.4	exon	6050631	6050726	6050631	ID=MS.gene28798.t1.exon10;Parent=MS.gene28798.t1
chr7.4	CDS	6050631	6050726	6050631	ID=cds.MS.gene28798.t1;Parent=MS.gene28798.t1
chr7.4	exon	6050320	6050352	6050320	ID=MS.gene28798.t1.exon11;Parent=MS.gene28798.t1
chr7.4	CDS	6050320	6050352	6050320	ID=cds.MS.gene28798.t1;Parent=MS.gene28798.t1

Gene Sequence

>MS.gene28798

ATGGCGCATCAAAGAGCCAAATTGTTGTTCCTTCTCTGTGCTCTATGCTATTCTCTCAGCGCCATTGCCGTGTAATTTTTCTGTTTTCCTTTTATTACCGTTTCTCGAAAATGTTGTTGATTCTACATTTGCTTATAAATCTATGTTTGGTATGCAGAAAGAGTTATTACGATATACTTCAAGTGTCGAAAGGTGCATCGGATGATCAGATTAAGAGAGCGTATAGAAAGCTTGCATTGAAGTATCATCCTGATAAGAATCCGGGAAATGAAGAAGCTAATAAGAAATTTGCGGAGATTAGCAATGGTACATAAATATACATGTATCTTTGCTATTCTTTTTAATGATTTAGTTTGTGTGTTGTTATTTGCTATTAATGCTTTGTTTCAATATAAACAACTTAATTACGCGATTATGACGTCAGTGCCTATCATATAAGTGTTTATGTATACATTATTTCTTTAACAAAATACAAAAATAAAGTGAAAATGTTTACTTATAAGGCATACAATATTTTTATAAGCTATATTAGGGGGGTTATGGAATTAAGTTGAAAACAGCTTATGGACACGTCATAAGTTGTTTCCATAAGCTCTTTCAAGCAGTCTCACAAATGTTTATGCCACTCGATAATTTCGAATAAGTCAATACAAACAGTCCCTTATTTTGGTTATTAATGGTTGCTTTTTATTGTTGCTGCTGTCAGCATATGAGGTATTGTCGGATAACGAGAAGAGAAATATTTATGATAAGTATGGTGAAGAGGGTTTGAAGCAGCATGCCGCTGGTGGAGGAAGAGGTGGTGGAATGAACATGCAGGATATTTTTAACTCGTAAGTCATCACCTTAGCCTTTGCTTGATTAGTTCTTAACCTATAAGTTAACACCATCACATTTCAGATATGTATTATCGGCTAATTACTTTATTTTTACTTGCATTGGTATAATGTATGTTGCAACAAAGAATCAAATAATATATGTTTATGGCTAAGAAAAGCAGTTATAGAAGGCTATTAGGGTTTTATATTATCACACTAACTGTAATCGGAACCTTCATATGGTTTTATTGATTCATTTGATTTCCTCATGTCTGCATCAATTTTTATGACGCCACAAATTTTAATATAGTCATTTATTTGCGATCAAAGATTATGTTGTCATGTGTAAGTGGACTGCTATGTTCTTGATGTGTATGGGGCTCTGGACTTGTATGCTAATTTTTAGTATGGGGTTCTGGACTTGCTTTTATGGATGACACCGAAATATGAATGTTTCTTTCAGTTTCTTTGGCGGGGGATCAATGGAGGAAGAAGAAGAGAAAATTGCGAAAGGCGACGACGTTATTGTTGATTTGGATGCAACCCTTGAAGATTTGTATATGGGTGGTTCCTTGAAGGTGCGGTCACATTTAATCTAGCTACTGTTTTGAGCTCAAGCATTAAATCTATGTATTTAATTATTTACCAATGGGTAACATATATGTGTCACATTGTCATGCTATTTTTAAATTTCTGCAACATTTTATTTTTATAATTTGAATAATATACTAGTAGATGGGTATGGGATAGATTCGCGACTATCATACTGGTTTTCACGTGACACGCGGCAACAGAAAAACACATTTTCATTAAGCTACATCAGCCAATAGAAAATCATAAATAAAACTAAAGCAACTAAAAATCATAAATAAAACTAAAGCAACTAAGAAGAACTGCTTTAGGGGATGAGATGCAGAACTTACATCAAGCTGACATCATGTATTCCCAGAGGCTATTCTTTATTTCCCTTTTGATAAATCTCAGATATTTTAGTTTGTACTTTGTGTTATACAGTTAAGTATTTTCATTGAGAAAATCAGGAGACACTGTAGCCACTATTCATGTATTATCATGGTGTAGTTGTAAACTAAGTGGTTATGAACTTGTCAAGAATTCTGAATCATCAATAACTCTGTCACGCTGTAGTGACCCAAAGTGTAGAATTCGCAAGTCATTTGTTGATTGCTTCTTTGTGATTATTGTATTGTAATTATCAGGTTTGGAGGGAGAAAAATGTTGTAAAGCCAGCTCCTGGAAAAAGACGCTGTAACTGTAGAAATGAGGTTTATCACAGGCAAATCGGGCCTGGAATGTTTCAACAAATGACAGAGCAGGTAAATATCATCTTCGAGGATGCTGATAGTACAAATGTTCCTGTTTATTCTTGTCCATTTTTTAGGATGTATATTTTGCCCTGCAAATACACTGGCTTCTAGTGTCAATGTTTCATGACATTTCATTGTATGATTGTGGAAACCAGAAATGTTTAATTTATATATATTCATACTCAGTTTCTTTTTCCTTGTCTTTTTTCCTTATGTGCTTGAGGGGACTGGGGTGTGAAGGTTTATTTTTAATTTTGTTCCGAATATTTGCAAAAATTTATGCTACTATGTGTGATATCTACCTGTCCAGGTTTGTGATCAATGTGCTAATGTCAAATACGTAAGGGAGGGATATTTCGTCACTGTTGATATTGAGAAAGGCATGAAAGATGGCCAGGTAAACTTTTAAAGTTTGTATGTAGGTTTTAGTGCTTTATGTAAGTATGCATAATGTCATGTCTCACTATCCATTTTCTTATAAGCCCTACACTTATAAGCATGTCTAATCACATCGACATCTAAGCTCTAAAGACTGTAGCTCTGTTTGATAATTCTATTTGTAATTATGTTAGAACTGTAATTGATTTTAATTTCAATCTAGTCTGAGCAGCACACAATAATTTGTAAATTTTCTATTTTATTTCAATTCAATTTATGACAAGTTCTTGCATTTCATTACAACAAATACTCACTTGTACATTTAATTTAATTTTTGACATTGACAAGACAAAAAAAGCCCAACAATTATAATATTTATTTACCCTGATAGGGACTTGGCTATTACTGGATGCATTAGTTCACATAGTATAGTATGCGATGCTCTAATTAGCTTGGTCCTCCCCTTTGATAGCTAGCTTTTAAGGGAGCTTTCCCAACTCCCAAGTGCTTGAGTGCTTATGAAATGGTACCTGGGCAGGTTTCCAGTGTCTTAGAAAAACTATATATGGAAGAGACACCAGAAAGGCTGAGTCGAGCGTTGTAGAGTGCATCCATTGAGTCGTTTGGCACTTAAGAGAAGTGCTATGATAGGGACTTGCATATTAGGGCAACCCGGTGCATTGAAGCTCCCGCATATGCAGGGTCCGGGAAGGGGTCCCACCATTTGGTTTATTGTACGCAGCCTTACCCTCTTTTTACACAAGAGGCTGTTTCCAGGACTTGAACCCTGTTTCCAGGACTTGCATATTATGGAGTGTTTTTTTGTTTTGAATGGAGTATTATGGAGTGCTTAAATCACACATCAAGTAGTATGAGATGCTTGTTTTAGTCCTTAAGTGGCTTGGTTTTTCCCATGGCAGCTAGTTTTACGGGAGGGTTCCCACATGCTTGGGGTGCTGAATTGCCCAGATGACCATATGCATAGCTCAGTGGTTCTTACTACTTTAGGGTCTGTTTGGGGGTTTAGGATGGGAGGGGAGGACGTTAAGCGGAAGGAATGGAGGGTTTTAGGAGGAAGGGCTTTGGGGTGTTTATTTCTCTTCATAATACAAAATCCCCCTAATTTGGGGAAACTCAAAATCTATTAGAAGAGATTTTTGAAGGGCTTAGATAAATTCTTCAAATTCTTTTCATGTTGTTGTAATACTTTAAAAATTGAAAATTTATTAATCGTTAGTCTTTTCTTACATCTTACAATTACAACTCCAATCCCCCAAAGCCCTCCCCTTCCCTCCAAATTCCCAAATAGAGCCTTTAGCTTGAGCCAAAAAATTCATGTTATTTTGGCTCTCTGACTAAATAAGCTCATCTTATTCATATTGAATTTTGACCTTTTATTGATATTATTAAATTTTCTCAGCTGATCAGTGGATACATTTAATTGCCATTTTTTTTTTTGACCAAAACAAACTTAATTTATATCATTAATTAAACAATGTTCAATACAAGAAGGATAAACATAAAAAATACGGTGACTAGCCCAAGAACATGAGCAACCGTGTTCCCTTGTCGCCTAATAAACTTCACCTAAGATTTAGATTTAAATGACCTATCATTTGACATGATTCACAATCAAACATTGTGACATCGTTTGATGCTTGCAGCTAACTCTATCAAATGGGAAAGGCATTTATTCTCATTGTTGTAAGACTTGACGACCTAGCTTCAATTTTAAGGGTGTACCTGTTTAAGCTGAAAATTAGTTTATGCAAATATTAGATGGTGGGAAATAGATCCTTGTTTTTTTTTTAAAGGAAATAGATCCTTGTTTGACATCAGTTCCGACTACCAAGTAATATAGAGGAGTGAAAACCAAAAGCTTTGAATATGCCACACTGCTTTCTTTTTTACCCTTGATCCATTTTCCATCTTTCTCACCAACCATTCTCAAAGTGTTATTTTGCAATTGAATGTAAAGTACGAATCTTAATTTATGAAAGCTTTAATGTTTTCCAAGTCGAAACTTGACTAATTGAATGTTTATGGCAATTTTTTGTCCTTTCACAGGAGGTGCTATTTTATGAGGACGGCGAGCCCATAATTGATGGAGAATCTGGAGATTTAAGGGTTCGTAGATGCCTTTCATTTTTGTTAGCAAATGTTTAATATGCATGTTATTTATGTGCAGTTTGCTGACAATCCATATGCTAATATGAACAGTTTCGTATCCGCACCGCACCTCATGAACTTTTCAAAAGGGAAGGCAATGACTTACACACGACTGTCACTATCACGCTGGTAAGTATAATCATGGTATTATTTTAGTTGTACCTTACCTTTCGGATTTTGGATAACACTGCAAGTAGTAACTACTATTACTAACCACTGTTGTAGTAAGTATTAAACAGTAACTAGCATGGAAGAGTTGGAATATGACACTTGTTGATTGTGCAAACGGTTAACTGTTCTCTGATATATTTGCATCTTAAAAATTCTAAGCAGTGTAACCTTGATCTCCTTTAGGTTCAAGCTCTTGTTGGTTTTGAGAAGACCGTTAAACACCTTGATGAACATTTGGTAGACATAAGCTCGAAGGTGAGCATGAAATATCTTCTTTGCTGCTCTTAATTGGTGTTGATTCTCCCACCCCAAAAACATTGAAACACACCTAACATATTTCTTTTGTCCCTCAGGGAATCACAAATCCAAAGCAAGTAAGGAAGTTCAAAGGGGAGGGTATGCCATTGCATATGAGCACAAAGAAAGGAGATCTTTACGTCACTTTTGAGGTTCTGTTCCCCACCTCACTATCGGAGGAACAGAAAACAAAAATAAAATCAATTCTTGGTTAGAATACATTCAGGATACATGCTATTTTGCTCATTATGTCCTCAATGTAACATGATTAGGTGGTTGTAAGTTACAACAAATACACGCCTTAGGCTTCTCGCCCCCATTTTTTGTTAGTTAACCAATAGATACTTTATTTTTATTGTTGATAGTGTTGCATCTACTGTGATCCTTGTCGGCACATGAGTGCCTTATTGTGGTGCTATTTTGATACAAGGATATCACAGCATTAGCTGAAAGAAAAACATAA

Protein sequence

>MS.gene28798.t1

MAHQRAKLLFLLCALCYSLSAIAVKSYYDILQVSKGASDDQIKRAYRKLALKYHPDKNPGNEEANKKFAEISNAYEVLSDNEKRNIYDKYGEEGLKQHAAGGGRGGGMNMQDIFNSFFGGGSMEEEEEKIAKGDDVIVDLDATLEDLYMGGSLKVWREKNVVKPAPGKRRCNCRNEVYHRQIGPGMFQQMTEQVCDQCANVKYVREGYFVTVDIEKGMKDGQEVLFYEDGEPIIDGESGDLRFRIRTAPHELFKREGNDLHTTVTITLVQALVGFEKTVKHLDEHLVDISSKGITNPKQVRKFKGEGMPLHMSTKKGDLYVTFEDITALAERKT