Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30685.t1 | XP_013452216.1 | 89.3 | 422 | 39 | 3 | 4 | 425 | 1 | 416 | 8.50E-223 | 782.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30685.t1 | A0A072U8X8 | 89.3 | 422 | 39 | 3 | 4 | 425 | 1 | 416 | 6.2e-223 | 782.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene30685 | 0.801084 | 1.06E-48 | -1.69E-46 |
| MS.gene049356 | MS.gene30685 | 0.821271 | 4.41E-53 | -1.69E-46 |
| MS.gene049488 | MS.gene30685 | 0.835729 | 1.42E-56 | -1.69E-46 |
| MS.gene049661 | MS.gene30685 | 0.80158 | 8.42E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene30685 | 0.813821 | 2.11E-51 | -1.69E-46 |
| MS.gene050397 | MS.gene30685 | 0.804297 | 2.31E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene30685 | 0.819759 | 9.81E-53 | -1.69E-46 |
| MS.gene050971 | MS.gene30685 | 0.818581 | 1.82E-52 | -1.69E-46 |
| MS.gene051860 | MS.gene30685 | 0.821448 | 4.02E-53 | -1.69E-46 |
| MS.gene052011 | MS.gene30685 | -0.807826 | 4.18E-50 | -1.69E-46 |
| MS.gene052077 | MS.gene30685 | 0.809993 | 1.44E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene30685 | 0.831763 | 1.39E-55 | -1.69E-46 |
| MS.gene052253 | MS.gene30685 | 0.840574 | 8.01E-58 | -1.69E-46 |
| MS.gene052340 | MS.gene30685 | 0.821807 | 3.32E-53 | -1.69E-46 |
| MS.gene052485 | MS.gene30685 | 0.813693 | 2.25E-51 | -1.69E-46 |
| MS.gene05316 | MS.gene30685 | 0.820287 | 7.43E-53 | -1.69E-46 |
| MS.gene053758 | MS.gene30685 | 0.821892 | 3.17E-53 | -1.69E-46 |
| MS.gene053813 | MS.gene30685 | 0.806636 | 7.47E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene30685 | 0.829371 | 5.34E-55 | -1.69E-46 |
| MS.gene053912 | MS.gene30685 | 0.820734 | 5.87E-53 | -1.69E-46 |
| MS.gene054011 | MS.gene30685 | 0.820102 | 8.19E-53 | -1.69E-46 |
| MS.gene054012 | MS.gene30685 | 0.801122 | 1.05E-48 | -1.69E-46 |
| MS.gene054183 | MS.gene30685 | 0.826256 | 3.00E-54 | -1.69E-46 |
| MS.gene054473 | MS.gene30685 | 0.801053 | 1.08E-48 | -1.69E-46 |
| MS.gene054918 | MS.gene30685 | 0.819725 | 9.99E-53 | -1.69E-46 |
| MS.gene055116 | MS.gene30685 | 0.832602 | 8.61E-56 | -1.69E-46 |
| MS.gene055277 | MS.gene30685 | 0.824014 | 1.02E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene30685 | 0.822162 | 2.75E-53 | -1.69E-46 |
| MS.gene055604 | MS.gene30685 | 0.811382 | 7.20E-51 | -1.69E-46 |
| MS.gene056191 | MS.gene30685 | 0.817288 | 3.56E-52 | -1.69E-46 |
| MS.gene056407 | MS.gene30685 | 0.811641 | 6.33E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene30685 | 0.825207 | 5.32E-54 | -1.69E-46 |
| MS.gene056659 | MS.gene30685 | 0.808065 | 3.72E-50 | -1.69E-46 |
| MS.gene056899 | MS.gene30685 | -0.813414 | 2.59E-51 | -1.69E-46 |
| MS.gene05702 | MS.gene30685 | 0.843574 | 1.29E-58 | -1.69E-46 |
| MS.gene057448 | MS.gene30685 | 0.814583 | 1.43E-51 | -1.69E-46 |
| MS.gene057449 | MS.gene30685 | 0.822939 | 1.81E-53 | -1.69E-46 |
| MS.gene057450 | MS.gene30685 | 0.81706 | 4.01E-52 | -1.69E-46 |
| MS.gene057469 | MS.gene30685 | 0.812281 | 4.59E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene30685 | 0.838904 | 2.18E-57 | -1.69E-46 |
| MS.gene057823 | MS.gene30685 | 0.834803 | 2.43E-56 | -1.69E-46 |
| MS.gene057825 | MS.gene30685 | 0.821358 | 4.21E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene30685 | 0.800246 | 1.58E-48 | -1.69E-46 |
| MS.gene058660 | MS.gene30685 | 0.807504 | 4.89E-50 | -1.69E-46 |
| MS.gene05886 | MS.gene30685 | 0.867093 | 1.76E-65 | -1.69E-46 |
| MS.gene058928 | MS.gene30685 | 0.83669 | 8.07E-57 | -1.69E-46 |
| MS.gene058949 | MS.gene30685 | 0.80974 | 1.63E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene30685 | 0.825091 | 5.66E-54 | -1.69E-46 |
| MS.gene059285 | MS.gene30685 | 0.83297 | 6.97E-56 | -1.69E-46 |
| MS.gene059294 | MS.gene30685 | 0.800817 | 1.21E-48 | -1.69E-46 |
| MS.gene059420 | MS.gene30685 | 0.848008 | 8.06E-60 | -1.69E-46 |
| MS.gene059597 | MS.gene30685 | 0.817035 | 4.06E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene30685 | 0.815181 | 1.05E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene30685 | 0.805632 | 1.22E-49 | -1.69E-46 |
| MS.gene059695 | MS.gene30685 | 0.801871 | 7.34E-49 | -1.69E-46 |
| MS.gene059711 | MS.gene30685 | 0.822208 | 2.68E-53 | -1.69E-46 |
| MS.gene059807 | MS.gene30685 | 0.800052 | 1.73E-48 | -1.69E-46 |
| MS.gene06037 | MS.gene30685 | 0.804893 | 1.74E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene30685 | 0.806274 | 8.91E-50 | -1.69E-46 |
| MS.gene060495 | MS.gene30685 | 0.800884 | 1.17E-48 | -1.69E-46 |
| MS.gene061049 | MS.gene30685 | 0.844854 | 5.84E-59 | -1.69E-46 |
| MS.gene061159 | MS.gene30685 | 0.836015 | 1.20E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30685.t1 | MTR_6g048350 | 87.470 | 423 | 52 | 1 | 3 | 425 | 1 | 422 | 0.0 | 771 |
| MS.gene30685.t1 | MTR_6g048310 | 89.336 | 422 | 39 | 3 | 4 | 425 | 1 | 416 | 0.0 | 753 |
| MS.gene30685.t1 | MTR_4g094548 | 83.059 | 425 | 69 | 3 | 3 | 425 | 1 | 424 | 0.0 | 737 |
| MS.gene30685.t1 | MTR_4g094570 | 79.905 | 423 | 84 | 1 | 3 | 425 | 1 | 422 | 0.0 | 720 |
| MS.gene30685.t1 | MTR_4g094555 | 80.142 | 423 | 83 | 1 | 3 | 425 | 1 | 422 | 0.0 | 714 |
| MS.gene30685.t1 | MTR_4g094550 | 79.245 | 424 | 86 | 2 | 3 | 425 | 1 | 423 | 0.0 | 704 |
| MS.gene30685.t1 | MTR_4g094562 | 78.487 | 423 | 82 | 1 | 3 | 425 | 1 | 414 | 0.0 | 698 |
| MS.gene30685.t1 | MTR_4g094560 | 78.960 | 423 | 78 | 2 | 3 | 425 | 1 | 412 | 0.0 | 689 |
| MS.gene30685.t1 | MTR_2g030470 | 63.403 | 429 | 145 | 5 | 1 | 425 | 2 | 422 | 0.0 | 568 |
| MS.gene30685.t1 | MTR_2g030470 | 61.631 | 417 | 149 | 4 | 1 | 414 | 414 | 822 | 0.0 | 549 |
| MS.gene30685.t1 | MTR_1g052640 | 61.337 | 419 | 150 | 4 | 3 | 417 | 1 | 411 | 0.0 | 553 |
| MS.gene30685.t1 | MTR_2g030460 | 60.432 | 417 | 153 | 4 | 3 | 415 | 1 | 409 | 0.0 | 549 |
| MS.gene30685.t1 | MTR_0083s0100 | 63.753 | 389 | 132 | 2 | 30 | 417 | 31 | 411 | 0.0 | 538 |
| MS.gene30685.t1 | MTR_2g030480 | 59.135 | 416 | 139 | 5 | 3 | 415 | 1 | 388 | 4.67e-180 | 507 |
| MS.gene30685.t1 | MTR_4g094562 | 75.874 | 286 | 69 | 0 | 3 | 288 | 1 | 286 | 4.30e-167 | 472 |
| MS.gene30685.t1 | MTR_4g094565 | 59.811 | 423 | 88 | 5 | 3 | 425 | 1 | 341 | 2.29e-166 | 471 |
| MS.gene30685.t1 | MTR_2g030460 | 58.187 | 342 | 131 | 4 | 3 | 340 | 1 | 334 | 1.71e-154 | 440 |
| MS.gene30685.t1 | MTR_1g052640 | 59.357 | 342 | 127 | 4 | 3 | 340 | 1 | 334 | 4.88e-152 | 434 |
| MS.gene30685.t1 | MTR_4g094565 | 70.629 | 286 | 56 | 1 | 3 | 288 | 1 | 258 | 3.61e-145 | 416 |
| MS.gene30685.t1 | MTR_8g039300 | 45.107 | 419 | 210 | 6 | 3 | 414 | 1 | 406 | 1.64e-136 | 397 |
| MS.gene30685.t1 | MTR_6g090090 | 45.498 | 422 | 200 | 7 | 1 | 415 | 25 | 423 | 1.48e-135 | 395 |
| MS.gene30685.t1 | MTR_6g089930 | 43.468 | 421 | 218 | 6 | 3 | 416 | 1 | 408 | 2.40e-134 | 392 |
| MS.gene30685.t1 | MTR_3g035040 | 44.181 | 421 | 215 | 7 | 3 | 416 | 1 | 408 | 7.92e-130 | 380 |
| MS.gene30685.t1 | MTR_1g052640 | 58.763 | 291 | 108 | 4 | 3 | 289 | 1 | 283 | 8.03e-126 | 366 |
| MS.gene30685.t1 | MTR_1g035220 | 43.112 | 392 | 181 | 7 | 3 | 386 | 1 | 358 | 1.15e-114 | 340 |
| MS.gene30685.t1 | MTR_1g062750 | 45.188 | 239 | 116 | 5 | 60 | 289 | 2 | 234 | 2.42e-74 | 232 |
| MS.gene30685.t1 | MTR_3g010150 | 58.537 | 41 | 17 | 0 | 127 | 167 | 14 | 54 | 6.54e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30685.t1 | AT5G61820 | 56.770 | 421 | 159 | 7 | 8 | 414 | 8 | 419 | 2.36e-169 | 483 |
| MS.gene30685.t1 | AT5G61820 | 56.770 | 421 | 159 | 7 | 8 | 414 | 8 | 419 | 2.36e-169 | 483 |
Find 0 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTAATTAACAAGAAAA+TGG | + | 42985:12018-12037 | MS.gene30685:intron | 15.0% |
| !! | AAACTATCAAATGATTCAAA+AGG | + | 42985:11149-11168 | MS.gene30685:CDS | 20.0% |
| !! | AATTTATTTATAACTGATCC+AGG | - | 42985:10486-10505 | MS.gene30685:intergenic | 20.0% |
| !! | AATTTGCAATAGTTACATAT+AGG | + | 42985:11734-11753 | MS.gene30685:intron | 20.0% |
| !! | ATTAAAACATTTATTACCCT+CGG | - | 42985:12007-12026 | MS.gene30685:intergenic | 20.0% |
| !!! | AAATAAAATCAGCAGTTTTT+TGG | + | 42985:10439-10458 | MS.gene30685:CDS | 20.0% |
| !!! | TATGATATTGATTTTCCAAA+AGG | + | 42985:10510-10529 | MS.gene30685:CDS | 20.0% |
| !!! | TTTGTTTAAAACTGTAATCA+TGG | + | 42985:11781-11800 | MS.gene30685:intron | 20.0% |
| ! | AATGTAACAGTGGATAAATA+CGG | + | 42985:10939-10958 | MS.gene30685:CDS | 25.0% |
| ! | CATTAGACCAATAGTAAATA+AGG | + | 42985:12191-12210 | MS.gene30685:intron | 25.0% |
| ! | TAAATCCAAAATATCGAGTT+TGG | + | 42985:11340-11359 | MS.gene30685:intron | 25.0% |
| ! | TTAAAACTGTAATCATGGAA+GGG | + | 42985:11786-11805 | MS.gene30685:intron | 25.0% |
| !! | AAAATCATGATTTTGTGCTA+GGG | + | 42985:11926-11945 | MS.gene30685:intron | 25.0% |
| !! | GATTGATTGGAATGATTTTA+TGG | + | 42985:11085-11104 | MS.gene30685:CDS | 25.0% |
| !! | TGTGAATTATGTATGTTTTC+AGG | + | 42985:12365-12384 | MS.gene30685:intron | 25.0% |
| !! | TTAATCCAAACTCGATATTT+TGG | - | 42985:11348-11367 | MS.gene30685:intergenic | 25.0% |
| !! | TTTAAAACTGTAATCATGGA+AGG | + | 42985:11785-11804 | MS.gene30685:intron | 25.0% |
| !!! | AAACTAGCCTTATTTACTAT+TGG | - | 42985:12201-12220 | MS.gene30685:intergenic | 25.0% |
| !!! | AATTATGTATGTTTTCAGGA+TGG | + | 42985:12369-12388 | MS.gene30685:intron | 25.0% |
| !!! | ATTATGTATGTTTTCAGGAT+GGG | + | 42985:12370-12389 | MS.gene30685:intron | 25.0% |
| !!! | TTTAAAATGAGTGTCGTTTA+AGG | - | 42985:12280-12299 | MS.gene30685:intergenic | 25.0% |
| AACAAACCTCCTTTATAATC+TGG | - | 42985:10978-10997 | None:intergenic | 30.0% | |
| ACCTAAAATACACCATGAAA+TGG | + | 42985:11063-11082 | MS.gene30685:CDS | 30.0% | |
| ACGAAACATATATCCATCAT+TGG | + | 42985:10598-10617 | MS.gene30685:CDS | 30.0% | |
| ACTCTAATTATGTTCTCGTA+AGG | + | 42985:10691-10710 | MS.gene30685:CDS | 30.0% | |
| AGTGATTGTTGGATCAAAAT+CGG | + | 42985:11283-11302 | MS.gene30685:intron | 30.0% | |
| ATACAGAAAATGATAGCCAT+AGG | + | 42985:10658-10677 | MS.gene30685:CDS | 30.0% | |
| ATCATTTGAACTTGATCCAA+CGG | + | 42985:11431-11450 | MS.gene30685:intron | 30.0% | |
| ATTCCAATCAATCCATTTCA+TGG | - | 42985:11078-11097 | MS.gene30685:intergenic | 30.0% | |
| CGAAACATATATCCATCATT+GGG | + | 42985:10599-10618 | MS.gene30685:CDS | 30.0% | |
| GAACTTAGATCATGATTGTA+AGG | + | 42985:11175-11194 | MS.gene30685:CDS | 30.0% | |
| GATATTCTTCCACAGTATTT+CGG | + | 42985:10735-10754 | MS.gene30685:CDS | 30.0% | |
| TAAATCCAAAATACCGAGTT+TGG | - | 42985:11406-11425 | MS.gene30685:intergenic | 30.0% | |
| TAGAAGCTAATATCTTGAGT+CGG | - | 42985:11874-11893 | MS.gene30685:intergenic | 30.0% | |
| TCAATTATGTATGCCTTAAC+AGG | - | 42985:11113-11132 | MS.gene30685:intergenic | 30.0% | |
| TCATTTCCATTTCCATAACT+TGG | - | 42985:12417-12436 | MS.gene30685:intergenic | 30.0% | |
| TTACCTATCTCTATACCAAA+AGG | - | 42985:10804-10823 | MS.gene30685:intergenic | 30.0% | |
| TTCATCAAGAATCATGTTGT+TGG | + | 42985:11206-11225 | MS.gene30685:intron | 30.0% | |
| TTCTCAAAAGAACTTGAGAA+TGG | - | 42985:10408-10427 | MS.gene30685:intergenic | 30.0% | |
| ! | AAATACCGAGTTTGGAATTT+AGG | - | 42985:11398-11417 | MS.gene30685:intergenic | 30.0% |
| ! | AAATTCCAAACTCGGTATTT+TGG | + | 42985:11398-11417 | MS.gene30685:intron | 30.0% |
| ! | AATTAATTGGAGGGTACAAT+TGG | - | 42985:12147-12166 | MS.gene30685:intergenic | 30.0% |
| ! | AGTGAAAGTACAAAATCTCT+AGG | - | 42985:10357-10376 | MS.gene30685:intergenic | 30.0% |
| ! | CAAAATCATGATTTTGTGCT+AGG | + | 42985:11925-11944 | MS.gene30685:intron | 30.0% |
| ! | CTAGCACAAAATCATGATTT+TGG | - | 42985:11927-11946 | MS.gene30685:intergenic | 30.0% |
| ! | TCCATTTCATGGTGTATTTT+AGG | - | 42985:11067-11086 | MS.gene30685:intergenic | 30.0% |
| ! | TGAGCTTTATAATGTAACAG+TGG | + | 42985:10929-10948 | MS.gene30685:CDS | 30.0% |
| !! | ATCATGATTTTGGTCTGAAT+TGG | - | 42985:11917-11936 | MS.gene30685:intergenic | 30.0% |
| !! | CTAATGCTTTGAAGAAAGTA+GGG | - | 42985:12177-12196 | MS.gene30685:intergenic | 30.0% |
| !! | CTCGGTATTTTGGATTTAAA+AGG | + | 42985:11408-11427 | MS.gene30685:intron | 30.0% |
| !! | GTCTCAATTGTTGTTTGTAT+GGG | - | 42985:12608-12627 | MS.gene30685:intergenic | 30.0% |
| !! | TCATGATTTTGGTCTGAATT+GGG | - | 42985:11916-11935 | MS.gene30685:intergenic | 30.0% |
| !! | TCTAATGCTTTGAAGAAAGT+AGG | - | 42985:12178-12197 | MS.gene30685:intergenic | 30.0% |
| !! | TGTCTCAATTGTTGTTTGTA+TGG | - | 42985:12609-12628 | MS.gene30685:intergenic | 30.0% |
| !!! | TTTTGTTTTTTTTCAGCCGA+GGG | + | 42985:11988-12007 | MS.gene30685:intron | 30.0% |
| ACACCAGTTCATTTCTTTGT+TGG | + | 42985:11514-11533 | MS.gene30685:intron | 35.0% | |
| ACGATCCTAAATTCCAAACT+CGG | + | 42985:11390-11409 | MS.gene30685:intron | 35.0% | |
| AGAAGCTAATATCTTGAGTC+GGG | - | 42985:11873-11892 | MS.gene30685:intergenic | 35.0% | |
| ATAAATACGGAAGGCCTTTA+AGG | + | 42985:10952-10971 | MS.gene30685:CDS | 35.0% | |
| ATCAAGAATCATGTTGTTGG+TGG | + | 42985:11209-11228 | MS.gene30685:intron | 35.0% | |
| ATCTCTATACCAAAAGGATC+CGG | - | 42985:10798-10817 | MS.gene30685:intergenic | 35.0% | |
| ATGATTGTGTTCATGTGAAG+AGG | + | 42985:11619-11638 | MS.gene30685:CDS | 35.0% | |
| CACCAGTTCATTTCTTTGTT+GGG | + | 42985:11515-11534 | MS.gene30685:intron | 35.0% | |
| CTCGGCTGAAAAAAAACAAA+AGG | - | 42985:11989-12008 | MS.gene30685:intergenic | 35.0% | |
| GGAATTGGATCAACTCTATA+TGG | + | 42985:11705-11724 | MS.gene30685:CDS | 35.0% | |
| GGTACACTCAATTAATTGGA+GGG | - | 42985:12156-12175 | MS.gene30685:intergenic | 35.0% | |
| GGTTCTGTCAAGATAAATGA+TGG | + | 42985:12492-12511 | MS.gene30685:CDS | 35.0% | |
| GTAGGGTACACTCAATTAAT+TGG | - | 42985:12160-12179 | MS.gene30685:intergenic | 35.0% | |
| TAACAGTGGATAAATACGGA+AGG | + | 42985:10943-10962 | MS.gene30685:CDS | 35.0% | |
| TACCCAACAAAGAAATGAAC+TGG | - | 42985:11520-11539 | MS.gene30685:intergenic | 35.0% | |
| TATGGAAATGGAAATGAAGC+AGG | + | 42985:12420-12439 | MS.gene30685:CDS | 35.0% | |
| TCATTTATCTTGACAGAACC+TGG | - | 42985:12492-12511 | MS.gene30685:intergenic | 35.0% | |
| TCTGTACCAAGTTATGGAAA+TGG | + | 42985:12408-12427 | MS.gene30685:CDS | 35.0% | |
| TGGATATATGTTTCGTGCAA+CGG | - | 42985:10594-10613 | MS.gene30685:intergenic | 35.0% | |
| TGTTCTTCTGTACCAAGTTA+TGG | + | 42985:12402-12421 | MS.gene30685:CDS | 35.0% | |
| TTAAGGCCAGATTATAAAGG+AGG | + | 42985:10969-10988 | MS.gene30685:CDS | 35.0% | |
| TTTAGGTAGAGACTTCTCTT+TGG | - | 42985:11050-11069 | MS.gene30685:intergenic | 35.0% | |
| ! | AATCATGTTGTTGGTGGAAA+TGG | + | 42985:11215-11234 | MS.gene30685:intron | 35.0% |
| ! | AATGGGACTTTTCTACCTAT+TGG | + | 42985:12569-12588 | MS.gene30685:CDS | 35.0% |
| ! | ACGACACTCATTTTAAACAG+AGG | + | 42985:12283-12302 | MS.gene30685:intron | 35.0% |
| ! | CGACACTCATTTTAAACAGA+GGG | + | 42985:12284-12303 | MS.gene30685:intron | 35.0% |
| ! | GAGAGTTTTACCAATCATTG+TGG | + | 42985:11842-11861 | MS.gene30685:intron | 35.0% |
| ! | GATCCTTTTGGTATAGAGAT+AGG | + | 42985:10798-10817 | MS.gene30685:CDS | 35.0% |
| ! | TGATACACAATGCAAGTTGA+AGG | + | 42985:11010-11029 | MS.gene30685:CDS | 35.0% |
| ! | TGATTTTATGGTGCCTGTTA+AGG | + | 42985:11097-11116 | MS.gene30685:CDS | 35.0% |
| ! | TTGATTGCTACATGACCTTT+TGG | - | 42985:10528-10547 | MS.gene30685:intergenic | 35.0% |
| !! | AAGTTGAAGGAAGGTTTTGA+GGG | + | 42985:11023-11042 | MS.gene30685:CDS | 35.0% |
| !! | ACACCATGAAATGGATTGAT+TGG | + | 42985:11072-11091 | MS.gene30685:CDS | 35.0% |
| !! | CCTTTAAGGCCAGATTATAA+AGG | + | 42985:10966-10985 | MS.gene30685:CDS | 35.0% |
| !! | CCTTTATAATCTGGCCTTAA+AGG | - | 42985:10969-10988 | MS.gene30685:intergenic | 35.0% |
| !! | TCTACTTGTTATCCTAAACC+AGG | + | 42985:12471-12490 | MS.gene30685:CDS | 35.0% |
| !!! | CTTTTGTTTTTTTTCAGCCG+AGG | + | 42985:11987-12006 | MS.gene30685:intron | 35.0% |
| !!! | TAGAGTTTTGAAGCATCCTA+TGG | - | 42985:10677-10696 | MS.gene30685:intergenic | 35.0% |
| AATCCTGCAGAAATTCCAGA+AGG | + | 42985:10822-10841 | MS.gene30685:CDS | 40.0% | |
| ACATAACCACCAGTTTGTAG+TGG | - | 42985:11654-11673 | MS.gene30685:intergenic | 40.0% | |
| ACCAAAAGGATCCGGAATAT+CGG | - | 42985:10790-10809 | MS.gene30685:intergenic | 40.0% | |
| AGAAATTCCAGAAGGGTTTG+AGG | + | 42985:10830-10849 | MS.gene30685:CDS | 40.0% | |
| AGTTTGGATTAAGTGACCGT+TGG | + | 42985:11356-11375 | MS.gene30685:intron | 40.0% | |
| ATCCTGCAGAAATTCCAGAA+GGG | + | 42985:10823-10842 | MS.gene30685:CDS | 40.0% | |
| ATCGACATATCAATGACCGT+TGG | - | 42985:11450-11469 | MS.gene30685:intergenic | 40.0% | |
| ATCGTCTGAACTTGATCCAA+CGG | - | 42985:11375-11394 | MS.gene30685:intergenic | 40.0% | |
| ATCTTGACAGAACCTGGTTT+AGG | - | 42985:12486-12505 | MS.gene30685:intergenic | 40.0% | |
| ATCTTGCAACAACCCAATGA+TGG | - | 42985:10614-10633 | MS.gene30685:intergenic | 40.0% | |
| CACAATCATTTCCCTCATCA+TGG | - | 42985:11608-11627 | MS.gene30685:intergenic | 40.0% | |
| CATAACCACCAGTTTGTAGT+GGG | - | 42985:11653-11672 | MS.gene30685:intergenic | 40.0% | |
| CATCAACATTCAGGTGGAAT+TGG | + | 42985:11690-11709 | MS.gene30685:CDS | 40.0% | |
| GGGTACACTCAATTAATTGG+AGG | - | 42985:12157-12176 | MS.gene30685:intergenic | 40.0% | |
| GTGAATGGATCAGTGATTGT+TGG | + | 42985:11272-11291 | MS.gene30685:intron | 40.0% | |
| TATGTTCTCGTAAGGAACGA+TGG | + | 42985:10699-10718 | MS.gene30685:CDS | 40.0% | |
| TGGAAATGAAGCAGGAAATG+AGG | + | 42985:12428-12447 | MS.gene30685:CDS | 40.0% | |
| TGGATCAACTCTATATGGAC+AGG | + | 42985:11710-11729 | MS.gene30685:CDS | 40.0% | |
| TTTGTGCTAGGGTTCAAACT+TGG | + | 42985:11937-11956 | MS.gene30685:intron | 40.0% | |
| ! | ACACAATGCAAGTTGAAGGA+AGG | + | 42985:11014-11033 | MS.gene30685:CDS | 40.0% |
| ! | AGGTCCTTGCTCAAATTTTG+GGG | - | 42985:10466-10485 | MS.gene30685:intergenic | 40.0% |
| ! | CAGGTCCTTGCTCAAATTTT+GGG | - | 42985:10467-10486 | MS.gene30685:intergenic | 40.0% |
| ! | GAAATGGATTCCGTGTAGTT+GGG | + | 42985:11231-11250 | MS.gene30685:intron | 40.0% |
| !! | CAAGTTGAAGGAAGGTTTTG+AGG | + | 42985:11022-11041 | MS.gene30685:CDS | 40.0% |
| AAAGGATCCGGAATATCGGT+CGG | - | 42985:10786-10805 | None:intergenic | 45.0% | |
| AATGAAGCAGGAAATGAGGC+AGG | + | 42985:12432-12451 | MS.gene30685:CDS | 45.0% | |
| AATGAGGCAGGGTACATTGT+AGG | + | 42985:12444-12463 | MS.gene30685:CDS | 45.0% | |
| ACAAGTCTCCCACTACAAAC+TGG | + | 42985:11642-11661 | MS.gene30685:CDS | 45.0% | |
| ACTGTGGAAGAATATCTGCC+TGG | - | 42985:10731-10750 | MS.gene30685:intergenic | 45.0% | |
| AGCTAATATCTTGAGTCGGG+TGG | - | 42985:11870-11889 | MS.gene30685:intergenic | 45.0% | |
| ATGAAGCAGGAAATGAGGCA+GGG | + | 42985:12433-12452 | MS.gene30685:CDS | 45.0% | |
| ATTCATGCTATCGATACGCG+TGG | + | 42985:10870-10889 | MS.gene30685:CDS | 45.0% | |
| CCAAAATTTGAGCAAGGACC+TGG | + | 42985:10465-10484 | MS.gene30685:CDS | 45.0% | |
| GCTGTTGCTCATCAACATTC+AGG | + | 42985:11681-11700 | MS.gene30685:CDS | 45.0% | |
| GTGGCGTAGAGGATAAGTTA+GGG | + | 42985:10889-10908 | MS.gene30685:CDS | 45.0% | |
| GTTGCTCATCAACATTCAGG+TGG | + | 42985:11684-11703 | MS.gene30685:CDS | 45.0% | |
| TGGTCCCCAAAATTTGAGCA+AGG | + | 42985:10459-10478 | MS.gene30685:CDS | 45.0% | |
| TGTAGCACAGACCATGATGA+GGG | + | 42985:11594-11613 | MS.gene30685:CDS | 45.0% | |
| TTCCTCGTGTTTCAGATCCA+AGG | - | 42985:10761-10780 | MS.gene30685:intergenic | 45.0% | |
| TTGTAGCACAGACCATGATG+AGG | + | 42985:11593-11612 | MS.gene30685:CDS | 45.0% | |
| ! | AAAGAGCACGCTGGAGTAAT+GGG | + | 42985:12552-12571 | MS.gene30685:CDS | 45.0% |
| ! | ACCGATATTCCGGATCCTTT+TGG | + | 42985:10786-10805 | MS.gene30685:CDS | 45.0% |
| ! | CCAGGTCCTTGCTCAAATTT+TGG | - | 42985:10468-10487 | MS.gene30685:intergenic | 45.0% |
| ! | GCTGAAGTTGTTGATGAAGC+TGG | + | 42985:10558-10577 | MS.gene30685:CDS | 45.0% |
| ! | GGAAATGGATTCCGTGTAGT+TGG | + | 42985:11230-11249 | MS.gene30685:intron | 45.0% |
| ! | GGGACTTTTCTACCTATTGG+TGG | + | 42985:12572-12591 | MS.gene30685:CDS | 45.0% |
| !! | AACCCTTCTGGAATTTCTGC+AGG | - | 42985:10828-10847 | MS.gene30685:intergenic | 45.0% |
| AAGGAACGATGGCATATGCC+AGG | + | 42985:10710-10729 | MS.gene30685:CDS | 50.0% | |
| AGGAACACCGACCGATATTC+CGG | + | 42985:10776-10795 | MS.gene30685:CDS | 50.0% | |
| AGTCTCCCACTACAAACTGG+TGG | + | 42985:11645-11664 | MS.gene30685:CDS | 50.0% | |
| CACTTCTCCTCAAACCCTTC+TGG | - | 42985:10840-10859 | MS.gene30685:intergenic | 50.0% | |
| CAGAAGGGTTTGAGGAGAAG+TGG | + | 42985:10838-10857 | MS.gene30685:CDS | 50.0% | |
| CATTACTCCAGCGTGCTCTT+TGG | - | 42985:12553-12572 | MS.gene30685:intergenic | 50.0% | |
| CCATTCACTGCGTGAATGCA+GGG | - | 42985:11260-11279 | MS.gene30685:intergenic | 50.0% | |
| CGTGGCGTAGAGGATAAGTT+AGG | + | 42985:10888-10907 | MS.gene30685:CDS | 50.0% | |
| CTTCCACAGTATTTCGGCCT+TGG | + | 42985:10741-10760 | MS.gene30685:CDS | 50.0% | |
| GATCCAAGGCCGAAATACTG+TGG | - | 42985:10747-10766 | MS.gene30685:intergenic | 50.0% | |
| GGAGTTGTTCTGCCACCAAT+AGG | - | 42985:12587-12606 | MS.gene30685:intergenic | 50.0% | |
| TCCATTCACTGCGTGAATGC+AGG | - | 42985:11261-11280 | MS.gene30685:intergenic | 50.0% | |
| TCGGGTGGAACCACAATGAT+TGG | - | 42985:11855-11874 | MS.gene30685:intergenic | 50.0% | |
| ! | AACAACACCAAAGAGCACGC+TGG | + | 42985:12543-12562 | MS.gene30685:CDS | 50.0% |
| ! | CAAAGAGCACGCTGGAGTAA+TGG | + | 42985:12551-12570 | MS.gene30685:CDS | 50.0% |
| CCCTGCATTCACGCAGTGAA+TGG | + | 42985:11257-11276 | MS.gene30685:intron | 55.0% | |
| GCTTCTACAGTTGCGCGTAG+AGG | + | 42985:11887-11906 | MS.gene30685:intron | 55.0% | |
| TATCGATACGCGTGGCGTAG+AGG | + | 42985:10878-10897 | MS.gene30685:CDS | 55.0% | |
| TGCAGGGTCTCCCAACTACA+CGG | - | 42985:11244-11263 | MS.gene30685:intergenic | 55.0% | |
| ! | GGCCTTGGATCTGAAACACG+AGG | + | 42985:10756-10775 | MS.gene30685:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 42985 | gene | 10336 | 12643 | 10336 | ID=MS.gene30685 |
| 42985 | mRNA | 10336 | 12643 | 10336 | ID=MS.gene30685.t1;Parent=MS.gene30685 |
| 42985 | exon | 10336 | 11196 | 10336 | ID=MS.gene30685.t1.exon1;Parent=MS.gene30685.t1 |
| 42985 | CDS | 10336 | 11196 | 10336 | ID=cds.MS.gene30685.t1;Parent=MS.gene30685.t1 |
| 42985 | exon | 11573 | 11731 | 11573 | ID=MS.gene30685.t1.exon2;Parent=MS.gene30685.t1 |
| 42985 | CDS | 11573 | 11731 | 11573 | ID=cds.MS.gene30685.t1;Parent=MS.gene30685.t1 |
| 42985 | exon | 12387 | 12643 | 12387 | ID=MS.gene30685.t1.exon3;Parent=MS.gene30685.t1 |
| 42985 | CDS | 12387 | 12643 | 12387 | ID=cds.MS.gene30685.t1;Parent=MS.gene30685.t1 |
| Gene Sequence |
| Protein sequence |
