Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33490.t1 | XP_003604643.1 | 91.5 | 377 | 31 | 1 | 1 | 376 | 130 | 506 | 1.50E-207 | 731.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33490.t1 | Q5Z9Z0 | 51.6 | 399 | 155 | 5 | 1 | 372 | 117 | 504 | 1.8e-119 | 430.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33490.t1 | A8TVQ0 | 91.5 | 377 | 31 | 1 | 1 | 376 | 130 | 506 | 1.1e-207 | 731.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene33490 | 0.864762 | 9.63E-65 | -1.69E-46 |
| MS.gene049549 | MS.gene33490 | 0.828888 | 7.00E-55 | -1.69E-46 |
| MS.gene050170 | MS.gene33490 | -0.808823 | 2.56E-50 | -1.69E-46 |
| MS.gene050338 | MS.gene33490 | 0.816007 | 6.90E-52 | -1.69E-46 |
| MS.gene050577 | MS.gene33490 | -0.802369 | 5.80E-49 | -1.69E-46 |
| MS.gene05104 | MS.gene33490 | 0.810179 | 1.31E-50 | -1.69E-46 |
| MS.gene051422 | MS.gene33490 | 0.807583 | 4.71E-50 | -1.69E-46 |
| MS.gene051439 | MS.gene33490 | 0.805703 | 1.17E-49 | -1.69E-46 |
| MS.gene051651 | MS.gene33490 | 0.821302 | 4.34E-53 | -1.69E-46 |
| MS.gene052211 | MS.gene33490 | 0.805758 | 1.14E-49 | -1.69E-46 |
| MS.gene05240 | MS.gene33490 | 0.849202 | 3.76E-60 | -1.69E-46 |
| MS.gene052606 | MS.gene33490 | 0.831896 | 1.29E-55 | -1.69E-46 |
| MS.gene052702 | MS.gene33490 | 0.840063 | 1.09E-57 | -1.69E-46 |
| MS.gene052705 | MS.gene33490 | 0.846304 | 2.36E-59 | -1.69E-46 |
| MS.gene053479 | MS.gene33490 | -0.813811 | 2.12E-51 | -1.69E-46 |
| MS.gene053887 | MS.gene33490 | 0.820781 | 5.72E-53 | -1.69E-46 |
| MS.gene054181 | MS.gene33490 | 0.818124 | 2.31E-52 | -1.69E-46 |
| MS.gene054277 | MS.gene33490 | 0.807924 | 3.99E-50 | -1.69E-46 |
| MS.gene054706 | MS.gene33490 | 0.814452 | 1.53E-51 | -1.69E-46 |
| MS.gene054884 | MS.gene33490 | 0.833468 | 5.24E-56 | -1.69E-46 |
| MS.gene055158 | MS.gene33490 | 0.815945 | 7.13E-52 | -1.69E-46 |
| MS.gene05589 | MS.gene33490 | -0.813948 | 1.98E-51 | -1.69E-46 |
| MS.gene055977 | MS.gene33490 | 0.80583 | 1.10E-49 | -1.69E-46 |
| MS.gene056590 | MS.gene33490 | 0.851872 | 6.69E-61 | -1.69E-46 |
| MS.gene056591 | MS.gene33490 | 0.850554 | 1.57E-60 | -1.69E-46 |
| MS.gene056688 | MS.gene33490 | 0.835993 | 1.21E-56 | -1.69E-46 |
| MS.gene056694 | MS.gene33490 | 0.852111 | 5.72E-61 | -1.69E-46 |
| MS.gene056697 | MS.gene33490 | 0.862553 | 4.67E-64 | -1.69E-46 |
| MS.gene056856 | MS.gene33490 | 0.857733 | 1.34E-62 | -1.69E-46 |
| MS.gene056922 | MS.gene33490 | 0.801561 | 8.50E-49 | -1.69E-46 |
| MS.gene057261 | MS.gene33490 | 0.850587 | 1.54E-60 | -1.69E-46 |
| MS.gene057544 | MS.gene33490 | 0.83033 | 3.12E-55 | -1.69E-46 |
| MS.gene057547 | MS.gene33490 | 0.810578 | 1.07E-50 | -1.69E-46 |
| MS.gene057548 | MS.gene33490 | 0.803575 | 3.27E-49 | -1.69E-46 |
| MS.gene057717 | MS.gene33490 | 0.808876 | 2.50E-50 | -1.69E-46 |
| MS.gene057768 | MS.gene33490 | 0.818893 | 1.55E-52 | -1.69E-46 |
| MS.gene058067 | MS.gene33490 | 0.812017 | 5.24E-51 | -1.69E-46 |
| MS.gene058381 | MS.gene33490 | 0.808043 | 3.76E-50 | -1.69E-46 |
| MS.gene058382 | MS.gene33490 | 0.841113 | 5.78E-58 | -1.69E-46 |
| MS.gene058603 | MS.gene33490 | 0.836208 | 1.07E-56 | -1.69E-46 |
| MS.gene058838 | MS.gene33490 | -0.80091 | 1.15E-48 | -1.69E-46 |
| MS.gene05926 | MS.gene33490 | 0.842192 | 3.00E-58 | -1.69E-46 |
| MS.gene059328 | MS.gene33490 | 0.800723 | 1.26E-48 | -1.69E-46 |
| MS.gene059402 | MS.gene33490 | 0.802407 | 5.69E-49 | -1.69E-46 |
| MS.gene059953 | MS.gene33490 | 0.818682 | 1.73E-52 | -1.69E-46 |
| MS.gene059955 | MS.gene33490 | 0.841424 | 4.79E-58 | -1.69E-46 |
| MS.gene06000 | MS.gene33490 | -0.801065 | 1.07E-48 | -1.69E-46 |
| MS.gene060087 | MS.gene33490 | 0.830142 | 3.47E-55 | -1.69E-46 |
| MS.gene060405 | MS.gene33490 | 0.82214 | 2.78E-53 | -1.69E-46 |
| MS.gene060593 | MS.gene33490 | 0.812481 | 4.15E-51 | -1.69E-46 |
| MS.gene061044 | MS.gene33490 | 0.808966 | 2.39E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 90 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAACATAATAGAATTAT+TGG | 0.142938 | 4.3:+83046935 | MS.gene33490:CDS |
| GATATTTGCTTCCTGGAATT+TGG | 0.177328 | 4.3:+83045028 | MS.gene33490:CDS |
| GAGCAATCTAAGAGTCTTAT+TGG | 0.216931 | 4.3:+83045476 | MS.gene33490:CDS |
| ACGATTATCATAACAGAAAA+TGG | 0.280720 | 4.3:+83046311 | MS.gene33490:CDS |
| GCTTTGTCAGCGAGAATATT+AGG | 0.282531 | 4.3:+83044524 | MS.gene33490:CDS |
| ATACTTTGCATGGTCCCTTT+TGG | 0.290939 | 4.3:+83046799 | MS.gene33490:CDS |
| CAGGGTCAAAATGGTGTAAT+AGG | 0.298560 | 4.3:+83045184 | MS.gene33490:CDS |
| ACGAAATATCAGGGTCAAAA+TGG | 0.301030 | 4.3:+83045175 | MS.gene33490:CDS |
| CTTTGTGGATATTTGCTTCC+TGG | 0.303992 | 4.3:+83045021 | MS.gene33490:CDS |
| TGTTTGTCCAAAGGGGATTC+AGG | 0.305206 | 4.3:+83046250 | MS.gene33490:CDS |
| ATTGTTAATGTGGCTTTATC+AGG | 0.308851 | 4.3:+83045617 | MS.gene33490:CDS |
| AGCTCTCTGCCCGGTGGTTT+AGG | 0.309537 | 4.3:+83046906 | MS.gene33490:CDS |
| GACGGATACACTGTGCGTTT+TGG | 0.311280 | 4.3:+83046839 | MS.gene33490:CDS |
| GACGCCCTTGATTTCATGTT+TGG | 0.322541 | 4.3:+83045274 | MS.gene33490:CDS |
| CAAGCCTTACAAGATGATTA+TGG | 0.348583 | 4.3:+83044499 | MS.gene33490:CDS |
| TCTAATGGGTCAGTTGAGTA+TGG | 0.348923 | 4.3:-83045235 | None:intergenic |
| AATGTATAAAACGAAATATC+AGG | 0.351551 | 4.3:+83045165 | MS.gene33490:CDS |
| ATAATCATCTTGTAAGGCTT+GGG | 0.354884 | 4.3:-83044497 | None:intergenic |
| ATCGATGAGCTACTTAATAA+TGG | 0.365239 | 4.3:+83044346 | MS.gene33490:CDS |
| TTGTAAAATCTAATTCCGTC+TGG | 0.379933 | 4.3:-83044316 | None:intergenic |
| TCTGCAGCGGGCGGCGCCGA+CGG | 0.383995 | 4.3:+83045575 | MS.gene33490:CDS |
| AGGCAAGGTGTGAATGTAAA+AGG | 0.387936 | 4.3:+83046776 | MS.gene33490:intron |
| ACATAAGACACCATGCTTGC+TGG | 0.388660 | 4.3:-83045425 | None:intergenic |
| TTACTTTGTCTCCAAATTCC+AGG | 0.398270 | 4.3:-83045039 | None:intergenic |
| TCCATTCAAAGTTGTCCAAA+AGG | 0.405927 | 4.3:-83046814 | None:intergenic |
| GGATACTCTCCTGTTGTTAG+TGG | 0.408095 | 4.3:-83045404 | None:intergenic |
| TGGCTATATGTTTGTCCAAA+GGG | 0.410402 | 4.3:+83046242 | MS.gene33490:CDS |
| GCTGCAGAATGTAGGGGAAT+TGG | 0.416752 | 4.3:-83045560 | None:intergenic |
| CATAATCATCTTGTAAGGCT+TGG | 0.430388 | 4.3:-83044498 | None:intergenic |
| GATTGCTCTTGAGTGAACTT+TGG | 0.449878 | 4.3:-83045461 | None:intergenic |
| AACCACCGGGCAGAGAGCTT+AGG | 0.450563 | 4.3:-83046902 | None:intergenic |
| TTGGAGACAAAGTAAAGCAT+TGG | 0.451185 | 4.3:+83045047 | MS.gene33490:CDS |
| TGGAGACAAAGTAAAGCATT+GGG | 0.453879 | 4.3:+83045048 | MS.gene33490:CDS |
| TATTAAGTAGCTCATCGATC+AGG | 0.456055 | 4.3:-83044342 | None:intergenic |
| GCCGCCCGCTGCAGAATGTA+GGG | 0.460089 | 4.3:-83045567 | None:intergenic |
| CGCCGCCCGCTGCAGAATGT+AGG | 0.462140 | 4.3:-83045568 | None:intergenic |
| TTTATACAACCACTAACAAC+AGG | 0.463135 | 4.3:+83045395 | MS.gene33490:CDS |
| CAAAATGGTGTAATAGGCAT+TGG | 0.471411 | 4.3:+83045190 | MS.gene33490:CDS |
| ACCATCCAAACATGAAATCA+AGG | 0.473106 | 4.3:-83045279 | None:intergenic |
| AGCAAGCATGGTGTCTTATG+TGG | 0.473776 | 4.3:+83045427 | MS.gene33490:CDS |
| ACCACCGGGCAGAGAGCTTA+GGG | 0.475465 | 4.3:-83046901 | None:intergenic |
| ATCACTCGAAGAGGCGCTCA+TGG | 0.478154 | 4.3:+83046581 | MS.gene33490:CDS |
| AGCAATCTAAGAGTCTTATT+GGG | 0.478362 | 4.3:+83045477 | MS.gene33490:CDS |
| GCCTCCATAATCATCTTGTA+AGG | 0.480473 | 4.3:-83044503 | None:intergenic |
| AGTAGGTCCTGAATCCCCTT+TGG | 0.484753 | 4.3:-83046257 | None:intergenic |
| ACACTTTGAGTACATCAGAT+TGG | 0.486476 | 4.3:+83045095 | MS.gene33490:CDS |
| ATGACAGATGTGAATAAAGA+AGG | 0.487306 | 4.3:+83046120 | MS.gene33490:intron |
| GCATTGGATTAAACTCTCAC+TGG | 0.490284 | 4.3:+83045206 | MS.gene33490:CDS |
| CCATTCAAAGTTGTCCAAAA+GGG | 0.499789 | 4.3:-83046813 | None:intergenic |
| GGGAATTGGTTTCGTTGCAT+TGG | 0.500156 | 4.3:-83045546 | None:intergenic |
| CCCTTGATTTCATGTTTGGA+TGG | 0.504970 | 4.3:+83045278 | MS.gene33490:CDS |
| TGTAAAATCTAATTCCGTCT+GGG | 0.505528 | 4.3:-83044315 | None:intergenic |
| AACTTTGTTGATTATGACAA+TGG | 0.506223 | 4.3:+83046866 | MS.gene33490:CDS |
| GTACTCAAAGTGTAAGAGAA+TGG | 0.519200 | 4.3:-83045085 | None:intergenic |
| GAAATCAAGGGCGTCTTCGA+CGG | 0.520163 | 4.3:-83045266 | None:intergenic |
| AATAAAGAAGGGACATACAT+TGG | 0.523480 | 4.3:+83046132 | MS.gene33490:CDS |
| GACAACTTTGAATGGAATGA+CGG | 0.527539 | 4.3:+83046821 | MS.gene33490:CDS |
| CATCTGCATGAGCAAGAAGT+TGG | 0.530133 | 4.3:-83045135 | None:intergenic |
| AATATGTGCAGGCTGCAACT+TGG | 0.539391 | 4.3:+83046222 | MS.gene33490:intron |
| CAAGAAACTTCCTAAACCAC+CGG | 0.545200 | 4.3:-83046916 | None:intergenic |
| ATGCAGAAGGAAAACTAAGT+GGG | 0.545587 | 4.3:+83044284 | None:intergenic |
| TTGGCTATATGTTTGTCCAA+AGG | 0.547740 | 4.3:+83046241 | MS.gene33490:CDS |
| ATTCCCCTACATTCTGCAGC+GGG | 0.553434 | 4.3:+83045563 | MS.gene33490:CDS |
| TTTCCTTTGTGTACAACAGT+AGG | 0.554600 | 4.3:-83046274 | None:intergenic |
| CCCCTACATTCTGCAGCGGG+CGG | 0.559665 | 4.3:+83045566 | MS.gene33490:CDS |
| GAAGTTGGTTGTGTGTTGAC+TGG | 0.560031 | 4.3:-83045120 | None:intergenic |
| GACACCCTAAGCTCTCTGCC+CGG | 0.573913 | 4.3:+83046897 | MS.gene33490:CDS |
| ATGTATAAAACGAAATATCA+GGG | 0.576545 | 4.3:+83045166 | MS.gene33490:CDS |
| AGGGACATACATTGGAGCAT+GGG | 0.581493 | 4.3:+83046140 | MS.gene33490:CDS |
| TGACAGATGTGAATAAAGAA+GGG | 0.582527 | 4.3:+83046121 | MS.gene33490:intron |
| AAGGGACATACATTGGAGCA+TGG | 0.582897 | 4.3:+83046139 | MS.gene33490:CDS |
| AGGAGAGTATCCAGCAAGCA+TGG | 0.588296 | 4.3:+83045415 | MS.gene33490:CDS |
| TATGCAGAAGGAAAACTAAG+TGG | 0.588404 | 4.3:+83044283 | None:intergenic |
| GGCTATATGTTTGTCCAAAG+GGG | 0.602874 | 4.3:+83046243 | MS.gene33490:CDS |
| GCAAGCATGGTGTCTTATGT+GGG | 0.610839 | 4.3:+83045428 | MS.gene33490:CDS |
| TGCAGAAGGAAAACTAAGTG+GGG | 0.612476 | 4.3:+83044285 | None:intergenic |
| TAATCATCTTGTAAGGCTTG+GGG | 0.615173 | 4.3:-83044496 | None:intergenic |
| ATGTAAAAGGATACTTTGCA+TGG | 0.622027 | 4.3:+83046789 | MS.gene33490:CDS |
| TCCAACACTATCACTCGAAG+AGG | 0.624433 | 4.3:+83046572 | MS.gene33490:CDS |
| GCCTTACAAGATGATTATGG+AGG | 0.632737 | 4.3:+83044502 | MS.gene33490:CDS |
| CCATCCAAACATGAAATCAA+GGG | 0.640294 | 4.3:-83045278 | None:intergenic |
| CCGCCCGCTGCAGAATGTAG+GGG | 0.641417 | 4.3:-83045566 | None:intergenic |
| GAAAACACTATTAACGCCGT+CGG | 0.643210 | 4.3:-83045591 | None:intergenic |
| GCCTCTTCGAGTGATAGTGT+TGG | 0.646940 | 4.3:-83046573 | None:intergenic |
| TGCATTGGCAGCATACATGC+TGG | 0.650774 | 4.3:-83045531 | None:intergenic |
| GGACCTACTGTTGTACACAA+AGG | 0.659998 | 4.3:+83046271 | MS.gene33490:CDS |
| AAGAAACTTCCTAAACCACC+GGG | 0.661886 | 4.3:-83046915 | None:intergenic |
| AATTCCCCTACATTCTGCAG+CGG | 0.669295 | 4.3:+83045562 | MS.gene33490:CDS |
| GCAGAAGGAAAACTAAGTGG+GGG | 0.675074 | 4.3:+83044286 | None:intergenic |
| ACCCTAAGCTCTCTGCCCGG+TGG | 0.683098 | 4.3:+83046900 | MS.gene33490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATAATAATATAAATTGA+TGG | + | chr4.3:83044421-83044440 | MS.gene33490:intron | 10.0% |
| !! | TTCTAATAAATTTAAATCAT+AGG | + | chr4.3:83046531-83046550 | MS.gene33490:intron | 10.0% |
| !! | ATTCAAGAAATAATAAATTG+AGG | + | chr4.3:83044924-83044943 | MS.gene33490:intron | 15.0% |
| !! | TATGATATACTAATAAAGTA+TGG | - | chr4.3:83044386-83044405 | None:intergenic | 15.0% |
| !!! | TTGACTATATTATTGTTTTT+TGG | + | chr4.3:83046741-83046760 | MS.gene33490:intron | 15.0% |
| !! | AAAACAATTTATGTCAAACA+AGG | - | chr4.3:83046088-83046107 | None:intergenic | 20.0% |
| !! | AAACAATTTATGTCAAACAA+GGG | - | chr4.3:83046087-83046106 | None:intergenic | 20.0% |
| !! | AATGTATAAAACGAAATATC+AGG | + | chr4.3:83045165-83045184 | MS.gene33490:CDS | 20.0% |
| !! | ACACCATTTATTATCTAATT+GGG | + | chr4.3:83045991-83046010 | MS.gene33490:intron | 20.0% |
| !! | ATGTATAAAACGAAATATCA+GGG | + | chr4.3:83045166-83045185 | MS.gene33490:CDS | 20.0% |
| !! | ATTCTAATGTTAGTTAGTTA+TGG | - | chr4.3:83044878-83044897 | None:intergenic | 20.0% |
| !! | CTACTAATTGTCATTAAAAA+AGG | + | chr4.3:83046433-83046452 | MS.gene33490:intron | 20.0% |
| !! | CTTGAACATAATAGAATTAT+TGG | + | chr4.3:83046935-83046954 | MS.gene33490:CDS | 20.0% |
| !! | TACACCATTTATTATCTAAT+TGG | + | chr4.3:83045990-83046009 | MS.gene33490:intron | 20.0% |
| !!! | AATTTTATTTATCTGTTTGC+AGG | + | chr4.3:83045372-83045391 | MS.gene33490:intron | 20.0% |
| !!! | TATATGCAGAAAAGATTTTA+AGG | + | chr4.3:83044997-83045016 | MS.gene33490:intron | 20.0% |
| !!! | TGTTTTCAAAATTGTTAATG+TGG | + | chr4.3:83045607-83045626 | MS.gene33490:CDS | 20.0% |
| !!! | TTTCTTGAATGAAAATTTTG+TGG | - | chr4.3:83044914-83044933 | None:intergenic | 20.0% |
| ! | AATAACTAAACAATATGTGC+AGG | + | chr4.3:83046211-83046230 | MS.gene33490:intron | 25.0% |
| ! | ACGATTATCATAACAGAAAA+TGG | + | chr4.3:83046311-83046330 | MS.gene33490:CDS | 25.0% |
| ! | ATAAATCCAACTATGTTTGT+TGG | - | chr4.3:83044855-83044874 | None:intergenic | 25.0% |
| ! | GTTTATTAGACACTGAAAAA+TGG | - | chr4.3:83046498-83046517 | None:intergenic | 25.0% |
| ! | TAACTAACTAGTTAGTTAGT+TGG | - | chr4.3:83044812-83044831 | None:intergenic | 25.0% |
| !! | AACTTTGTTGATTATGACAA+TGG | + | chr4.3:83046866-83046885 | MS.gene33490:CDS | 25.0% |
| !! | ATTATCTTTTATCTGCAATG+AGG | + | chr4.3:83046640-83046659 | MS.gene33490:CDS | 25.0% |
| !! | ATTGGGTCATATGATTTTAT+TGG | + | chr4.3:83045494-83045513 | MS.gene33490:CDS | 25.0% |
| !! | CTTTAGAGATGAAACTATAA+AGG | + | chr4.3:83044667-83044686 | MS.gene33490:intron | 25.0% |
| !! | GAACAATTTTATTACTTGAG+AGG | + | chr4.3:83045736-83045755 | MS.gene33490:intron | 25.0% |
| !! | GTTTGACATAAATTGTTTTC+TGG | + | chr4.3:83046089-83046108 | MS.gene33490:intron | 25.0% |
| !! | TTTTCTGTTATGATAATCGT+AGG | - | chr4.3:83046311-83046330 | None:intergenic | 25.0% |
| !!! | AAAAGATTTTAAGGACTTTG+TGG | + | chr4.3:83045006-83045025 | MS.gene33490:CDS | 25.0% |
| !!! | ATATGTGACTCTTTTTCATT+GGG | + | chr4.3:83044468-83044487 | MS.gene33490:CDS | 25.0% |
| !!! | ATGACTCTAGAACTTTTTAT+GGG | + | chr4.3:83045966-83045985 | MS.gene33490:intron | 25.0% |
| !!! | TTTTTTGGTTTTTTGTGTGA+AGG | + | chr4.3:83046756-83046775 | MS.gene33490:intron | 25.0% |
| AATAAAGAAGGGACATACAT+TGG | + | chr4.3:83046132-83046151 | MS.gene33490:CDS | 30.0% | |
| AGGCCCAATTAGATAATAAA+TGG | - | chr4.3:83045997-83046016 | None:intergenic | 30.0% | |
| ATAATCATCTTGTAAGGCTT+GGG | - | chr4.3:83044500-83044519 | None:intergenic | 30.0% | |
| ATCGATGAGCTACTTAATAA+TGG | + | chr4.3:83044346-83044365 | MS.gene33490:CDS | 30.0% | |
| ATGACAGATGTGAATAAAGA+AGG | + | chr4.3:83046120-83046139 | MS.gene33490:intron | 30.0% | |
| ATGTAAAAGGATACTTTGCA+TGG | + | chr4.3:83046789-83046808 | MS.gene33490:CDS | 30.0% | |
| ATTGATGGAATTATTGATCC+AGG | + | chr4.3:83044436-83044455 | MS.gene33490:intron | 30.0% | |
| CAATGAAAAAGAGTCACATA+TGG | - | chr4.3:83044469-83044488 | None:intergenic | 30.0% | |
| TGACAGATGTGAATAAAGAA+GGG | + | chr4.3:83046121-83046140 | MS.gene33490:intron | 30.0% | |
| TGTAAAATCTAATTCCGTCT+GGG | - | chr4.3:83044318-83044337 | None:intergenic | 30.0% | |
| TTGTAAAATCTAATTCCGTC+TGG | - | chr4.3:83044319-83044338 | None:intergenic | 30.0% | |
| TTTATACAACCACTAACAAC+AGG | + | chr4.3:83045395-83045414 | MS.gene33490:CDS | 30.0% | |
| ! | ATAAACGTGATTTTGTCCAT+TGG | - | chr4.3:83046034-83046053 | None:intergenic | 30.0% |
| ! | CGAGAAAGATTAGAATGTTT+TGG | + | chr4.3:83044593-83044612 | MS.gene33490:intron | 30.0% |
| ! | GTTGGTAGAAATATCATTGA+GGG | - | chr4.3:83045936-83045955 | None:intergenic | 30.0% |
| !! | AGCAATCTAAGAGTCTTATT+GGG | + | chr4.3:83045477-83045496 | MS.gene33490:CDS | 30.0% |
| !! | ATTGTTAATGTGGCTTTATC+AGG | + | chr4.3:83045617-83045636 | MS.gene33490:CDS | 30.0% |
| !! | CATATGTGACTCTTTTTCAT+TGG | + | chr4.3:83044467-83044486 | MS.gene33490:CDS | 30.0% |
| !!! | CATGACTCTAGAACTTTTTA+TGG | + | chr4.3:83045965-83045984 | MS.gene33490:intron | 30.0% |
| AACCAACCAACAAACATAGT+TGG | + | chr4.3:83044846-83044865 | MS.gene33490:intron | 35.0% | |
| AACTTTGTCAGGAATTTAGG+AGG | + | chr4.3:83045695-83045714 | MS.gene33490:intron | 35.0% | |
| ACACTTTGAGTACATCAGAT+TGG | + | chr4.3:83045095-83045114 | MS.gene33490:CDS | 35.0% | |
| ACCACTCCTAATTGTTGAAA+AGG | + | chr4.3:83045656-83045675 | MS.gene33490:intron | 35.0% | |
| ACCATCCAAACATGAAATCA+AGG | - | chr4.3:83045282-83045301 | None:intergenic | 35.0% | |
| ACGAAATATCAGGGTCAAAA+TGG | + | chr4.3:83045175-83045194 | MS.gene33490:CDS | 35.0% | |
| CAAAATGGTGTAATAGGCAT+TGG | + | chr4.3:83045190-83045209 | MS.gene33490:CDS | 35.0% | |
| CAAGCCTTACAAGATGATTA+TGG | + | chr4.3:83044499-83044518 | MS.gene33490:CDS | 35.0% | |
| CATAATCATCTTGTAAGGCT+TGG | - | chr4.3:83044501-83044520 | None:intergenic | 35.0% | |
| CCATCCAAACATGAAATCAA+GGG | - | chr4.3:83045281-83045300 | None:intergenic | 35.0% | |
| CCATTCAAAGTTGTCCAAAA+GGG | - | chr4.3:83046816-83046835 | None:intergenic | 35.0% | |
| CCTAATTGTTGAAAAGGAGA+AGG | + | chr4.3:83045662-83045681 | MS.gene33490:intron | 35.0% | |
| CTAGTTAGTTAGTTGGTTAG+TGG | - | chr4.3:83044805-83044824 | None:intergenic | 35.0% | |
| GACAACTTTGAATGGAATGA+CGG | + | chr4.3:83046821-83046840 | MS.gene33490:CDS | 35.0% | |
| GAGAACTTTGTCAGGAATTT+AGG | + | chr4.3:83045692-83045711 | MS.gene33490:intron | 35.0% | |
| GATATTTGCTTCCTGGAATT+TGG | + | chr4.3:83045028-83045047 | MS.gene33490:CDS | 35.0% | |
| GTACTCAAAGTGTAAGAGAA+TGG | - | chr4.3:83045088-83045107 | None:intergenic | 35.0% | |
| GTTATAGTGAGAACTTTGTC+AGG | + | chr4.3:83045684-83045703 | MS.gene33490:intron | 35.0% | |
| TAATCATCTTGTAAGGCTTG+GGG | - | chr4.3:83044499-83044518 | None:intergenic | 35.0% | |
| TATTAAGTAGCTCATCGATC+AGG | - | chr4.3:83044345-83044364 | None:intergenic | 35.0% | |
| TCCATTCAAAGTTGTCCAAA+AGG | - | chr4.3:83046817-83046836 | None:intergenic | 35.0% | |
| TGGCTATATGTTTGTCCAAA+GGG | + | chr4.3:83046242-83046261 | MS.gene33490:CDS | 35.0% | |
| TTACTTTGTCTCCAAATTCC+AGG | - | chr4.3:83045042-83045061 | None:intergenic | 35.0% | |
| TTGGAGACAAAGTAAAGCAT+TGG | + | chr4.3:83045047-83045066 | MS.gene33490:CDS | 35.0% | |
| TTGGCTATATGTTTGTCCAA+AGG | + | chr4.3:83046241-83046260 | MS.gene33490:CDS | 35.0% | |
| TTTCCTTTGTGTACAACAGT+AGG | - | chr4.3:83046277-83046296 | None:intergenic | 35.0% | |
| ! | AACTATGTTTGTTGGTTGGT+TGG | - | chr4.3:83044847-83044866 | None:intergenic | 35.0% |
| ! | ATACGGTCACAATTTTGTCA+TGG | - | chr4.3:83045345-83045364 | None:intergenic | 35.0% |
| ! | ATCCAACTATGTTTGTTGGT+TGG | - | chr4.3:83044851-83044870 | None:intergenic | 35.0% |
| ! | CCTTCTCCTTTTCAACAATT+AGG | - | chr4.3:83045665-83045684 | None:intergenic | 35.0% |
| ! | CTCCTTTTTACAGTCTCTAA+GGG | + | chr4.3:83045805-83045824 | MS.gene33490:intron | 35.0% |
| ! | GAGCAATCTAAGAGTCTTAT+TGG | + | chr4.3:83045476-83045495 | MS.gene33490:CDS | 35.0% |
| ! | TAGCACACATTGATTAGTGT+TGG | - | chr4.3:83046060-83046079 | None:intergenic | 35.0% |
| ! | TCCTTTTCAACAATTAGGAG+TGG | - | chr4.3:83045660-83045679 | None:intergenic | 35.0% |
| ! | TCTCCTTTTTACAGTCTCTA+AGG | + | chr4.3:83045804-83045823 | MS.gene33490:intron | 35.0% |
| ! | TGGAGACAAAGTAAAGCATT+GGG | + | chr4.3:83045048-83045067 | MS.gene33490:CDS | 35.0% |
| !! | GGTTGGTAGAAATATCATTG+AGG | - | chr4.3:83045937-83045956 | None:intergenic | 35.0% |
| !! | TTCTAGAGTCATGTAGAACT+AGG | - | chr4.3:83045958-83045977 | None:intergenic | 35.0% |
| AAGAAACTTCCTAAACCACC+GGG | - | chr4.3:83046918-83046937 | None:intergenic | 40.0% | |
| ACAATTAGGAGTGGTGAGAA+AGG | - | chr4.3:83045651-83045670 | None:intergenic | 40.0% | |
| AGAGATCTAGACACATCCTA+GGG | + | chr4.3:83045828-83045847 | MS.gene33490:intron | 40.0% | |
| AGAGTCATGTAGAACTAGGT+TGG | - | chr4.3:83045954-83045973 | None:intergenic | 40.0% | |
| AGGCAAGGTGTGAATGTAAA+AGG | + | chr4.3:83046776-83046795 | MS.gene33490:intron | 40.0% | |
| AGTGTGTAGAGAGTTATCCT+AGG | - | chr4.3:83045870-83045889 | None:intergenic | 40.0% | |
| CAAGAAACTTCCTAAACCAC+CGG | - | chr4.3:83046919-83046938 | None:intergenic | 40.0% | |
| CAGGGTCAAAATGGTGTAAT+AGG | + | chr4.3:83045184-83045203 | MS.gene33490:CDS | 40.0% | |
| CATTGGACTAATCGAGTGTT+AGG | - | chr4.3:83046017-83046036 | None:intergenic | 40.0% | |
| CCCTTGATTTCATGTTTGGA+TGG | + | chr4.3:83045278-83045297 | MS.gene33490:CDS | 40.0% | |
| CTCCCTTAGAGACTGTAAAA+AGG | - | chr4.3:83045810-83045829 | None:intergenic | 40.0% | |
| CTTTGTGGATATTTGCTTCC+TGG | + | chr4.3:83045021-83045040 | MS.gene33490:CDS | 40.0% | |
| GAAAACACTATTAACGCCGT+CGG | - | chr4.3:83045594-83045613 | None:intergenic | 40.0% | |
| GATTGCTCTTGAGTGAACTT+TGG | - | chr4.3:83045464-83045483 | None:intergenic | 40.0% | |
| GCATTGGATTAAACTCTCAC+TGG | + | chr4.3:83045206-83045225 | MS.gene33490:CDS | 40.0% | |
| GCCTCCATAATCATCTTGTA+AGG | - | chr4.3:83044506-83044525 | None:intergenic | 40.0% | |
| GCCTTACAAGATGATTATGG+AGG | + | chr4.3:83044502-83044521 | MS.gene33490:CDS | 40.0% | |
| GCTTTGTCAGCGAGAATATT+AGG | + | chr4.3:83044524-83044543 | MS.gene33490:CDS | 40.0% | |
| GGCTATATGTTTGTCCAAAG+GGG | + | chr4.3:83046243-83046262 | MS.gene33490:CDS | 40.0% | |
| GTCACATATGGTATTTGACC+TGG | - | chr4.3:83044457-83044476 | None:intergenic | 40.0% | |
| GTCCATGGTTGTTGTAGAAA+CGG | - | chr4.3:83045323-83045342 | None:intergenic | 40.0% | |
| ! | ATACTTTGCATGGTCCCTTT+TGG | + | chr4.3:83046799-83046818 | MS.gene33490:CDS | 40.0% |
| ! | ATGTTTGTTGGTTGGTTGGT+TGG | - | chr4.3:83044843-83044862 | None:intergenic | 40.0% |
| ! | CACAATTTTGTCATGGTCCA+TGG | - | chr4.3:83045338-83045357 | None:intergenic | 40.0% |
| ! | CCCTTTTGGACAACTTTGAA+TGG | + | chr4.3:83046813-83046832 | MS.gene33490:CDS | 40.0% |
| ! | CGACGGCTTTTTGATCTAAT+GGG | - | chr4.3:83045252-83045271 | None:intergenic | 40.0% |
| ! | CTAACACTCGATTAGTCCAA+TGG | + | chr4.3:83046015-83046034 | MS.gene33490:intron | 40.0% |
| ! | TCGACGGCTTTTTGATCTAA+TGG | - | chr4.3:83045253-83045272 | None:intergenic | 40.0% |
| ! | TCTAATGGGTCAGTTGAGTA+TGG | - | chr4.3:83045238-83045257 | None:intergenic | 40.0% |
| !! | ATCTCTAAAGTGTGAGTGTG+TGG | - | chr4.3:83044657-83044676 | None:intergenic | 40.0% |
| !!! | TGGTTTTTTGTGTGAAGGCA+AGG | + | chr4.3:83046761-83046780 | MS.gene33490:intron | 40.0% |
| AAGGGACATACATTGGAGCA+TGG | + | chr4.3:83046139-83046158 | MS.gene33490:CDS | 45.0% | |
| AATATGTGCAGGCTGCAACT+TGG | + | chr4.3:83046222-83046241 | MS.gene33490:intron | 45.0% | |
| AATTCCCCTACATTCTGCAG+CGG | + | chr4.3:83045562-83045581 | MS.gene33490:CDS | 45.0% | |
| ACATAAGACACCATGCTTGC+TGG | - | chr4.3:83045428-83045447 | None:intergenic | 45.0% | |
| AGCAAGCATGGTGTCTTATG+TGG | + | chr4.3:83045427-83045446 | MS.gene33490:CDS | 45.0% | |
| AGGGACATACATTGGAGCAT+GGG | + | chr4.3:83046140-83046159 | MS.gene33490:CDS | 45.0% | |
| CATCTGCATGAGCAAGAAGT+TGG | - | chr4.3:83045138-83045157 | None:intergenic | 45.0% | |
| GACCGTTTCTACAACAACCA+TGG | + | chr4.3:83045318-83045337 | MS.gene33490:intron | 45.0% | |
| GACGCCCTTGATTTCATGTT+TGG | + | chr4.3:83045274-83045293 | MS.gene33490:CDS | 45.0% | |
| GAGAGATCTAGACACATCCT+AGG | + | chr4.3:83045827-83045846 | MS.gene33490:intron | 45.0% | |
| GCAAGCATGGTGTCTTATGT+GGG | + | chr4.3:83045428-83045447 | MS.gene33490:CDS | 45.0% | |
| GGACCTACTGTTGTACACAA+AGG | + | chr4.3:83046271-83046290 | MS.gene33490:CDS | 45.0% | |
| GGATACTCTCCTGTTGTTAG+TGG | - | chr4.3:83045407-83045426 | None:intergenic | 45.0% | |
| TCCAACACTATCACTCGAAG+AGG | + | chr4.3:83046572-83046591 | MS.gene33490:CDS | 45.0% | |
| TGTTTGTCCAAAGGGGATTC+AGG | + | chr4.3:83046250-83046269 | MS.gene33490:CDS | 45.0% | |
| ! | ATGTGTCTAGAACTCTCCCT+AGG | - | chr4.3:83045847-83045866 | None:intergenic | 45.0% |
| ! | GAAGTTGGTTGTGTGTTGAC+TGG | - | chr4.3:83045123-83045142 | None:intergenic | 45.0% |
| ! | GGGAATTGGTTTCGTTGCAT+TGG | - | chr4.3:83045549-83045568 | None:intergenic | 45.0% |
| !! | GAGAGTTCTAGACACATCCT+AGG | + | chr4.3:83045850-83045869 | MS.gene33490:intron | 45.0% |
| !! | AAATAAAATTTCAATTTATA+CGG | - | chr4.3:83045362-83045381 | None:intergenic | 5.0% |
| AGTAGGTCCTGAATCCCCTT+TGG | - | chr4.3:83046260-83046279 | None:intergenic | 50.0% | |
| ATTCCCCTACATTCTGCAGC+GGG | + | chr4.3:83045563-83045582 | MS.gene33490:CDS | 50.0% | |
| GCTGCAGAATGTAGGGGAAT+TGG | - | chr4.3:83045563-83045582 | None:intergenic | 50.0% | |
| ! | GACGGATACACTGTGCGTTT+TGG | + | chr4.3:83046839-83046858 | MS.gene33490:CDS | 50.0% |
| ! | GCCTCTTCGAGTGATAGTGT+TGG | - | chr4.3:83046576-83046595 | None:intergenic | 50.0% |
| ! | TGCATTGGCAGCATACATGC+TGG | - | chr4.3:83045534-83045553 | None:intergenic | 50.0% |
| !! | AGGAGAGTATCCAGCAAGCA+TGG | + | chr4.3:83045415-83045434 | MS.gene33490:CDS | 50.0% |
| !! | AGTGGGGGTATTAACCCAGA+CGG | + | chr4.3:83044301-83044320 | MS.gene33490:CDS | 50.0% |
| !! | GAAATCAAGGGCGTCTTCGA+CGG | - | chr4.3:83045269-83045288 | None:intergenic | 50.0% |
| !! | ATCACTCGAAGAGGCGCTCA+TGG | + | chr4.3:83046581-83046600 | MS.gene33490:CDS | 55.0% |
| AACCACCGGGCAGAGAGCTT+AGG | - | chr4.3:83046905-83046924 | None:intergenic | 60.0% | |
| ACCACCGGGCAGAGAGCTTA+GGG | - | chr4.3:83046904-83046923 | None:intergenic | 60.0% | |
| AGCTCTCTGCCCGGTGGTTT+AGG | + | chr4.3:83046906-83046925 | MS.gene33490:CDS | 60.0% | |
| GACACCCTAAGCTCTCTGCC+CGG | + | chr4.3:83046897-83046916 | MS.gene33490:CDS | 60.0% | |
| ACCCTAAGCTCTCTGCCCGG+TGG | + | chr4.3:83046900-83046919 | MS.gene33490:CDS | 65.0% | |
| CCCCTACATTCTGCAGCGGG+CGG | + | chr4.3:83045566-83045585 | MS.gene33490:CDS | 65.0% | |
| CCGCCCGCTGCAGAATGTAG+GGG | - | chr4.3:83045569-83045588 | None:intergenic | 65.0% | |
| GCCGCCCGCTGCAGAATGTA+GGG | - | chr4.3:83045570-83045589 | None:intergenic | 65.0% | |
| CGCCGCCCGCTGCAGAATGT+AGG | - | chr4.3:83045571-83045590 | None:intergenic | 70.0% | |
| !! | TCTGCAGCGGGCGGCGCCGA+CGG | + | chr4.3:83045575-83045594 | MS.gene33490:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 83044290 | 83046961 | 83044290 | ID=MS.gene33490 |
| chr4.3 | mRNA | 83044290 | 83046961 | 83044290 | ID=MS.gene33490.t1;Parent=MS.gene33490 |
| chr4.3 | exon | 83044290 | 83044367 | 83044290 | ID=MS.gene33490.t1.exon1;Parent=MS.gene33490.t1 |
| chr4.3 | CDS | 83044290 | 83044367 | 83044290 | ID=cds.MS.gene33490.t1;Parent=MS.gene33490.t1 |
| chr4.3 | exon | 83044458 | 83044545 | 83044458 | ID=MS.gene33490.t1.exon2;Parent=MS.gene33490.t1 |
| chr4.3 | CDS | 83044458 | 83044545 | 83044458 | ID=cds.MS.gene33490.t1;Parent=MS.gene33490.t1 |
| chr4.3 | exon | 83045006 | 83045299 | 83045006 | ID=MS.gene33490.t1.exon3;Parent=MS.gene33490.t1 |
| chr4.3 | CDS | 83045006 | 83045299 | 83045006 | ID=cds.MS.gene33490.t1;Parent=MS.gene33490.t1 |
| chr4.3 | exon | 83045394 | 83045638 | 83045394 | ID=MS.gene33490.t1.exon4;Parent=MS.gene33490.t1 |
| chr4.3 | CDS | 83045394 | 83045638 | 83045394 | ID=cds.MS.gene33490.t1;Parent=MS.gene33490.t1 |
| chr4.3 | exon | 83046127 | 83046161 | 83046127 | ID=MS.gene33490.t1.exon5;Parent=MS.gene33490.t1 |
| chr4.3 | CDS | 83046127 | 83046161 | 83046127 | ID=cds.MS.gene33490.t1;Parent=MS.gene33490.t1 |
| chr4.3 | exon | 83046233 | 83046332 | 83046233 | ID=MS.gene33490.t1.exon6;Parent=MS.gene33490.t1 |
| chr4.3 | CDS | 83046233 | 83046332 | 83046233 | ID=cds.MS.gene33490.t1;Parent=MS.gene33490.t1 |
| chr4.3 | exon | 83046553 | 83046661 | 83046553 | ID=MS.gene33490.t1.exon7;Parent=MS.gene33490.t1 |
| chr4.3 | CDS | 83046553 | 83046661 | 83046553 | ID=cds.MS.gene33490.t1;Parent=MS.gene33490.t1 |
| chr4.3 | exon | 83046778 | 83046961 | 83046778 | ID=MS.gene33490.t1.exon8;Parent=MS.gene33490.t1 |
| chr4.3 | CDS | 83046778 | 83046961 | 83046778 | ID=cds.MS.gene33490.t1;Parent=MS.gene33490.t1 |
| Gene Sequence |
| Protein sequence |
