Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33571.t1 | XP_024626066.1 | 89.8 | 205 | 15 | 1 | 1 | 199 | 1 | 205 | 8.10E-91 | 343.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33571.t1 | Q9ZVZ9 | 63.9 | 155 | 50 | 1 | 51 | 199 | 45 | 199 | 8.0e-47 | 188.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33571.t1 | A0A072W0T5 | 89.8 | 205 | 15 | 1 | 1 | 199 | 1 | 205 | 5.8e-91 | 343.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049284 | MS.gene33571 | 0.803387 | 3.57E-49 | -1.69E-46 |
| MS.gene049351 | MS.gene33571 | 0.806754 | 7.05E-50 | -1.69E-46 |
| MS.gene049661 | MS.gene33571 | 0.807819 | 4.20E-50 | -1.69E-46 |
| MS.gene049662 | MS.gene33571 | 0.805855 | 1.09E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene33571 | 0.845982 | 2.89E-59 | -1.69E-46 |
| MS.gene050397 | MS.gene33571 | 0.80525 | 1.46E-49 | -1.69E-46 |
| MS.gene050404 | MS.gene33571 | 0.808053 | 3.74E-50 | -1.69E-46 |
| MS.gene050406 | MS.gene33571 | 0.825131 | 5.54E-54 | -1.69E-46 |
| MS.gene050464 | MS.gene33571 | 0.808763 | 2.64E-50 | -1.69E-46 |
| MS.gene050529 | MS.gene33571 | 0.828451 | 8.93E-55 | -1.69E-46 |
| MS.gene050670 | MS.gene33571 | 0.846406 | 2.22E-59 | -1.69E-46 |
| MS.gene05101 | MS.gene33571 | 0.837084 | 6.40E-57 | -1.69E-46 |
| MS.gene05105 | MS.gene33571 | 0.818465 | 1.93E-52 | -1.69E-46 |
| MS.gene051471 | MS.gene33571 | 0.810491 | 1.12E-50 | -1.69E-46 |
| MS.gene051525 | MS.gene33571 | 0.819348 | 1.22E-52 | -1.69E-46 |
| MS.gene051582 | MS.gene33571 | 0.842729 | 2.16E-58 | -1.69E-46 |
| MS.gene052011 | MS.gene33571 | -0.815061 | 1.12E-51 | -1.69E-46 |
| MS.gene052078 | MS.gene33571 | 0.823431 | 1.39E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene33571 | 0.830534 | 2.78E-55 | -1.69E-46 |
| MS.gene052253 | MS.gene33571 | 0.869988 | 2.05E-66 | -1.69E-46 |
| MS.gene052310 | MS.gene33571 | 0.840351 | 9.17E-58 | -1.69E-46 |
| MS.gene052340 | MS.gene33571 | 0.829716 | 4.41E-55 | -1.69E-46 |
| MS.gene052421 | MS.gene33571 | 0.811142 | 8.12E-51 | -1.69E-46 |
| MS.gene052481 | MS.gene33571 | 0.808578 | 2.89E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene33571 | 0.826875 | 2.13E-54 | -1.69E-46 |
| MS.gene054918 | MS.gene33571 | 0.814846 | 1.25E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene33571 | 0.85312 | 2.95E-61 | -1.69E-46 |
| MS.gene055277 | MS.gene33571 | 0.808375 | 3.19E-50 | -1.69E-46 |
| MS.gene055370 | MS.gene33571 | 0.803769 | 2.98E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene33571 | 0.819685 | 1.02E-52 | -1.69E-46 |
| MS.gene055428 | MS.gene33571 | 0.835804 | 1.36E-56 | -1.69E-46 |
| MS.gene05553 | MS.gene33571 | 0.800908 | 1.16E-48 | -1.69E-46 |
| MS.gene056191 | MS.gene33571 | 0.802875 | 4.56E-49 | -1.69E-46 |
| MS.gene056451 | MS.gene33571 | 0.803107 | 4.08E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene33571 | 0.82339 | 1.42E-53 | -1.69E-46 |
| MS.gene05702 | MS.gene33571 | 0.837523 | 4.94E-57 | -1.69E-46 |
| MS.gene057121 | MS.gene33571 | 0.802294 | 6.01E-49 | -1.69E-46 |
| MS.gene057123 | MS.gene33571 | 0.818666 | 1.74E-52 | -1.69E-46 |
| MS.gene057146 | MS.gene33571 | 0.843415 | 1.42E-58 | -1.69E-46 |
| MS.gene057245 | MS.gene33571 | 0.810189 | 1.30E-50 | -1.69E-46 |
| MS.gene057310 | MS.gene33571 | 0.831159 | 1.95E-55 | -1.69E-46 |
| MS.gene057749 | MS.gene33571 | 0.811119 | 8.21E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene33571 | 0.812928 | 3.31E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene33571 | 0.807233 | 5.59E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene33571 | 0.820514 | 6.59E-53 | -1.69E-46 |
| MS.gene058233 | MS.gene33571 | 0.840601 | 7.88E-58 | -1.69E-46 |
| MS.gene058276 | MS.gene33571 | 0.806209 | 9.19E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene33571 | 0.846021 | 2.82E-59 | -1.69E-46 |
| MS.gene05886 | MS.gene33571 | 0.846984 | 1.54E-59 | -1.69E-46 |
| MS.gene058928 | MS.gene33571 | 0.817467 | 3.25E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene33571 | 0.808442 | 3.09E-50 | -1.69E-46 |
| MS.gene059141 | MS.gene33571 | 0.80853 | 2.96E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene33571 | 0.818697 | 1.71E-52 | -1.69E-46 |
| MS.gene059536 | MS.gene33571 | 0.806113 | 9.63E-50 | -1.69E-46 |
| MS.gene059597 | MS.gene33571 | 0.834777 | 2.46E-56 | -1.69E-46 |
| MS.gene059688 | MS.gene33571 | 0.851688 | 7.54E-61 | -1.69E-46 |
| MS.gene059692 | MS.gene33571 | 0.847141 | 1.40E-59 | -1.69E-46 |
| MS.gene059695 | MS.gene33571 | 0.849381 | 3.35E-60 | -1.69E-46 |
| MS.gene05984 | MS.gene33571 | 0.817115 | 3.90E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene33571 | 0.819967 | 8.79E-53 | -1.69E-46 |
| MS.gene060403 | MS.gene33571 | 0.812324 | 4.49E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene33571 | 0.853374 | 2.49E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33571.t1 | MTR_1g103810 | 89.756 | 205 | 15 | 1 | 1 | 199 | 1 | 205 | 5.46e-132 | 369 |
| MS.gene33571.t1 | MTR_1g103810 | 88.750 | 160 | 12 | 1 | 1 | 154 | 1 | 160 | 2.92e-99 | 285 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33571.t1 | AT1G05385 | 69.231 | 143 | 41 | 1 | 57 | 199 | 6 | 145 | 1.77e-64 | 196 |
| MS.gene33571.t1 | AT1G05385 | 69.231 | 143 | 41 | 1 | 57 | 199 | 60 | 199 | 3.94e-64 | 197 |
Find 51 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTGACTTTGTCTTCTCAT+TGG | 0.218549 | 1.3:-71134006 | None:intergenic |
| GAAAACGATGATGGGGTTAT+TGG | 0.237764 | 1.3:+71133960 | MS.gene33571:CDS |
| ATCTGCAGTCCGTCTAAATT+TGG | 0.273557 | 1.3:-71134117 | None:intergenic |
| TTACAGTTTATCACCATTAA+TGG | 0.273988 | 1.3:+71133905 | MS.gene33571:CDS |
| TCTTCGGCCCATGCCATTAA+TGG | 0.281488 | 1.3:-71133918 | None:intergenic |
| CCTGACTTTGTCTTCTCATT+GGG | 0.285272 | 1.3:-71134005 | None:intergenic |
| CTAAATTTGGCATTGTCATC+AGG | 0.305219 | 1.3:-71134104 | None:intergenic |
| AAAACGATGATGGGGTTATT+GGG | 0.311993 | 1.3:+71133961 | MS.gene33571:CDS |
| GGTAAAAGCAGTAAGATCTT+TGG | 0.364747 | 1.3:+71134362 | MS.gene33571:CDS |
| AATTAGCGTTGCCACTTCAT+TGG | 0.375737 | 1.3:+71133866 | MS.gene33571:CDS |
| CCCAATGAGAAGACAAAGTC+AGG | 0.396652 | 1.3:+71134005 | MS.gene33571:CDS |
| TGCAGCAAAGGAGTCGATTC+GGG | 0.402932 | 1.3:+71134139 | MS.gene33571:CDS |
| ATCACAAGATTTGACATTGA+AGG | 0.411870 | 1.3:+71133021 | MS.gene33571:CDS |
| GACTTAACTTCCGTCGGCAG+TGG | 0.431839 | 1.3:-71134417 | None:intergenic |
| ATGCAGCAAAGGAGTCGATT+CGG | 0.434911 | 1.3:+71134138 | MS.gene33571:CDS |
| GGAACACATAATAGCTGAAA+AGG | 0.441979 | 1.3:-71132998 | None:intergenic |
| TTTGTCAGCTGACTTCTCTT+CGG | 0.445390 | 1.3:-71133934 | None:intergenic |
| TTCGGGAGTATCTTGGTAGT+TGG | 0.447521 | 1.3:+71134156 | MS.gene33571:CDS |
| AATTGAAAGGTTTCTGCGAC+TGG | 0.455585 | 1.3:-71133847 | None:intergenic |
| GCTGACTTTAAGTAAGCCTT+CGG | 0.465034 | 1.3:-71134038 | None:intergenic |
| GCAGGAATCATACTTTGCTC+TGG | 0.488174 | 1.3:+71134341 | MS.gene33571:intron |
| ACTTAACTTCCGTCGGCAGT+GGG | 0.492647 | 1.3:-71134416 | None:intergenic |
| ATACTTCTTGAGAAACAGTC+TGG | 0.498665 | 1.3:-71134187 | None:intergenic |
| TCCGTCGGCAGTGGGGCTGA+TGG | 0.499406 | 1.3:-71134408 | None:intergenic |
| TAACAGATAAACTGCAATCC+AGG | 0.501310 | 1.3:+71133793 | MS.gene33571:intron |
| GACAAAGAGGAAAACGATGA+TGG | 0.503005 | 1.3:+71133951 | MS.gene33571:CDS |
| GGGAGTATCTTGGTAGTTGG+AGG | 0.505346 | 1.3:+71134159 | MS.gene33571:CDS |
| GGGATCAAATAACGATTTGA+CGG | 0.517749 | 1.3:-71133985 | None:intergenic |
| GAGTCGATTCGGGAGTATCT+TGG | 0.529772 | 1.3:+71134149 | MS.gene33571:CDS |
| ACAAAGAGGAAAACGATGAT+GGG | 0.531382 | 1.3:+71133952 | MS.gene33571:CDS |
| GTTTATCACCATTAATGGCA+TGG | 0.531611 | 1.3:+71133910 | MS.gene33571:CDS |
| TAAATTTGGCATTGTCATCA+GGG | 0.539047 | 1.3:-71134103 | None:intergenic |
| TTCAATGTCAAATCTTGTGA+TGG | 0.542981 | 1.3:-71133019 | None:intergenic |
| TTTATCACCATTAATGGCAT+GGG | 0.553461 | 1.3:+71133911 | MS.gene33571:CDS |
| GCCATCAGCCCCACTGCCGA+CGG | 0.555502 | 1.3:+71134407 | MS.gene33571:CDS |
| TTACTTAAAGTCAGCAAGAG+AGG | 0.560221 | 1.3:+71134046 | MS.gene33571:CDS |
| AAGTGGCAACGCTAATTGAA+AGG | 0.563857 | 1.3:-71133860 | None:intergenic |
| AGAGAAGTCAGCTGACAAAG+AGG | 0.564571 | 1.3:+71133938 | MS.gene33571:CDS |
| TGTTATTGTAACCAATGAAG+TGG | 0.566510 | 1.3:-71133877 | None:intergenic |
| AAACGATGATGGGGTTATTG+GGG | 0.568617 | 1.3:+71133962 | MS.gene33571:CDS |
| GGAGTATCTTGGTAGTTGGA+GGG | 0.581542 | 1.3:+71134160 | MS.gene33571:CDS |
| CTGCGACTGGAAGCTTCGAG+AGG | 0.595865 | 1.3:-71133834 | None:intergenic |
| ACGGACTGCAGATGCAGCAA+AGG | 0.596536 | 1.3:+71134127 | MS.gene33571:CDS |
| TCATTGGTTACAATAACATG+TGG | 0.609111 | 1.3:+71133882 | MS.gene33571:CDS |
| AAGCTGTGCAGTATTAGACC+TGG | 0.611400 | 1.3:-71133811 | None:intergenic |
| ATGACAATGCCAAATTTAGA+CGG | 0.613681 | 1.3:+71134108 | MS.gene33571:CDS |
| ATTTCAGACTTAACTTCCGT+CGG | 0.625733 | 1.3:-71134423 | None:intergenic |
| CTTAACTTCCGTCGGCAGTG+GGG | 0.642851 | 1.3:-71134415 | None:intergenic |
| CAAAGAGGAAAACGATGATG+GGG | 0.655727 | 1.3:+71133953 | MS.gene33571:CDS |
| GAGTATCTTGGTAGTTGGAG+GGG | 0.662716 | 1.3:+71134161 | MS.gene33571:CDS |
| CCAATGAGAAGACAAAGTCA+GGG | 0.666576 | 1.3:+71134006 | MS.gene33571:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATATAATCATGCTT+TGG | + | chr1.3:71134307-71134326 | MS.gene33571:intron | 15.0% |
| !! | ATTAATCTATTTATCCAAAT+AGG | + | chr1.3:71133299-71133318 | MS.gene33571:intron | 15.0% |
| !! | AAACTGTTATGTATAGTTTA+TGG | - | chr1.3:71133555-71133574 | None:intergenic | 20.0% |
| !!! | AAATTGTTTTAAGGTTTGTT+TGG | + | chr1.3:71133421-71133440 | MS.gene33571:intron | 20.0% |
| !!! | TAAGCTGTTTTTTATATCAA+AGG | - | chr1.3:71133626-71133645 | None:intergenic | 20.0% |
| !!! | TATTTCAAACATTTTGAGAT+TGG | + | chr1.3:71133055-71133074 | MS.gene33571:intron | 20.0% |
| !!! | TCAAAATGTTTGAAATAGTA+AGG | - | chr1.3:71133052-71133071 | None:intergenic | 20.0% |
| ! | ATATGCACTTATATGATAAG+GGG | + | chr1.3:71133649-71133668 | MS.gene33571:intron | 25.0% |
| ! | ATTGAATGATACAACCTATT+TGG | - | chr1.3:71133316-71133335 | None:intergenic | 25.0% |
| ! | CATATGCACTTATATGATAA+GGG | + | chr1.3:71133648-71133667 | MS.gene33571:intron | 25.0% |
| ! | TTACAGTTTATCACCATTAA+TGG | + | chr1.3:71133905-71133924 | MS.gene33571:CDS | 25.0% |
| !! | TAGCATATATGTTAGGATTT+TGG | + | chr1.3:71134254-71134273 | MS.gene33571:intron | 25.0% |
| !!! | TTTTAAGGTTTGTTTGGAAT+TGG | + | chr1.3:71133427-71133446 | MS.gene33571:intron | 25.0% |
| ATCACAAGATTTGACATTGA+AGG | + | chr1.3:71133021-71133040 | MS.gene33571:CDS | 30.0% | |
| ATGACAATGCCAAATTTAGA+CGG | + | chr1.3:71134108-71134127 | MS.gene33571:CDS | 30.0% | |
| ATGGTAAACTAAGTAAGAGT+AGG | + | chr1.3:71133739-71133758 | MS.gene33571:intron | 30.0% | |
| CATTCACAAAAAGAAAAGAC+TGG | - | chr1.3:71134286-71134305 | None:intergenic | 30.0% | |
| CTTTGACTAGCATATATGTT+AGG | + | chr1.3:71134247-71134266 | MS.gene33571:intron | 30.0% | |
| GAAAAGCTGTCAATAAATGA+AGG | - | chr1.3:71133766-71133785 | None:intergenic | 30.0% | |
| GCATATGCACTTATATGATA+AGG | + | chr1.3:71133647-71133666 | MS.gene33571:intron | 30.0% | |
| GGTTGTATCATTCAATTGAA+AGG | + | chr1.3:71133320-71133339 | MS.gene33571:intron | 30.0% | |
| GTCATACAATACTTACAACA+TGG | + | chr1.3:71133720-71133739 | MS.gene33571:intron | 30.0% | |
| TAAATTTGGCATTGTCATCA+GGG | - | chr1.3:71134106-71134125 | None:intergenic | 30.0% | |
| TGCTTATTATGAGAGAACTA+TGG | + | chr1.3:71133463-71133482 | MS.gene33571:intron | 30.0% | |
| TGTTATTGTAACCAATGAAG+TGG | - | chr1.3:71133880-71133899 | None:intergenic | 30.0% | |
| TTCAATGTCAAATCTTGTGA+TGG | - | chr1.3:71133022-71133041 | None:intergenic | 30.0% | |
| TTTATCACCATTAATGGCAT+GGG | + | chr1.3:71133911-71133930 | MS.gene33571:CDS | 30.0% | |
| ! | GTAAGTATTGTATGACACAA+AGG | - | chr1.3:71133716-71133735 | None:intergenic | 30.0% |
| ! | TCATTGGTTACAATAACATG+TGG | + | chr1.3:71133882-71133901 | MS.gene33571:CDS | 30.0% |
| !! | TTGCACTATAGTATTGATAG+TGG | + | chr1.3:71133393-71133412 | MS.gene33571:intron | 30.0% |
| ACAAAGAGGAAAACGATGAT+GGG | + | chr1.3:71133952-71133971 | MS.gene33571:CDS | 35.0% | |
| ATACTTCTTGAGAAACAGTC+TGG | - | chr1.3:71134190-71134209 | None:intergenic | 35.0% | |
| ATTTCAGACTTAACTTCCGT+CGG | - | chr1.3:71134426-71134445 | None:intergenic | 35.0% | |
| CTAAATTTGGCATTGTCATC+AGG | - | chr1.3:71134107-71134126 | None:intergenic | 35.0% | |
| GGAACACATAATAGCTGAAA+AGG | - | chr1.3:71133001-71133020 | None:intergenic | 35.0% | |
| GGGATCAAATAACGATTTGA+CGG | - | chr1.3:71133988-71134007 | None:intergenic | 35.0% | |
| GGTAAAAGCAGTAAGATCTT+TGG | + | chr1.3:71134362-71134381 | MS.gene33571:CDS | 35.0% | |
| GTTTATCACCATTAATGGCA+TGG | + | chr1.3:71133910-71133929 | MS.gene33571:CDS | 35.0% | |
| TAACAGATAAACTGCAATCC+AGG | + | chr1.3:71133793-71133812 | MS.gene33571:intron | 35.0% | |
| TTACTTAAAGTCAGCAAGAG+AGG | + | chr1.3:71134046-71134065 | MS.gene33571:CDS | 35.0% | |
| ! | TTTGGCAAACTTTTACTCAG+AGG | + | chr1.3:71134380-71134399 | MS.gene33571:CDS | 35.0% |
| !! | AAAACGATGATGGGGTTATT+GGG | + | chr1.3:71133961-71133980 | MS.gene33571:CDS | 35.0% |
| !! | GTGGCTCGTAAATTGTTTTA+AGG | + | chr1.3:71133412-71133431 | MS.gene33571:intron | 35.0% |
| AAGTGGCAACGCTAATTGAA+AGG | - | chr1.3:71133863-71133882 | None:intergenic | 40.0% | |
| AATTGAAAGGTTTCTGCGAC+TGG | - | chr1.3:71133850-71133869 | None:intergenic | 40.0% | |
| AGCAAAGTATGATTCCTGCA+AGG | - | chr1.3:71134340-71134359 | None:intergenic | 40.0% | |
| ATCTGCAGTCCGTCTAAATT+TGG | - | chr1.3:71134120-71134139 | None:intergenic | 40.0% | |
| CAAAGAGGAAAACGATGATG+GGG | + | chr1.3:71133953-71133972 | MS.gene33571:CDS | 40.0% | |
| CCAATGAGAAGACAAAGTCA+GGG | + | chr1.3:71134006-71134025 | MS.gene33571:CDS | 40.0% | |
| CCTGACTTTGTCTTCTCATT+GGG | - | chr1.3:71134008-71134027 | None:intergenic | 40.0% | |
| GACAAAGAGGAAAACGATGA+TGG | + | chr1.3:71133951-71133970 | MS.gene33571:CDS | 40.0% | |
| GCAAAGTATGATTCCTGCAA+GGG | - | chr1.3:71134339-71134358 | None:intergenic | 40.0% | |
| TATGACACAAAGGCTCTGTT+TGG | - | chr1.3:71133706-71133725 | None:intergenic | 40.0% | |
| ! | AATTAGCGTTGCCACTTCAT+TGG | + | chr1.3:71133866-71133885 | MS.gene33571:CDS | 40.0% |
| ! | CAAACTTTTACTCAGAGGCA+GGG | + | chr1.3:71134385-71134404 | MS.gene33571:CDS | 40.0% |
| ! | GCTGACTTTAAGTAAGCCTT+CGG | - | chr1.3:71134041-71134060 | None:intergenic | 40.0% |
| ! | TTTGTCAGCTGACTTCTCTT+CGG | - | chr1.3:71133937-71133956 | None:intergenic | 40.0% |
| !! | AAACGATGATGGGGTTATTG+GGG | + | chr1.3:71133962-71133981 | MS.gene33571:CDS | 40.0% |
| !! | GAAAACGATGATGGGGTTAT+TGG | + | chr1.3:71133960-71133979 | MS.gene33571:CDS | 40.0% |
| AAGCTGTGCAGTATTAGACC+TGG | - | chr1.3:71133814-71133833 | None:intergenic | 45.0% | |
| AGAGAAGTCAGCTGACAAAG+AGG | + | chr1.3:71133938-71133957 | MS.gene33571:CDS | 45.0% | |
| ATGCAGCAAAGGAGTCGATT+CGG | + | chr1.3:71134138-71134157 | MS.gene33571:CDS | 45.0% | |
| CCCAATGAGAAGACAAAGTC+AGG | + | chr1.3:71134005-71134024 | MS.gene33571:CDS | 45.0% | |
| CCCTGACTTTGTCTTCTCAT+TGG | - | chr1.3:71134009-71134028 | None:intergenic | 45.0% | |
| GCAGGAATCATACTTTGCTC+TGG | + | chr1.3:71134341-71134360 | MS.gene33571:intron | 45.0% | |
| ! | GAGTATCTTGGTAGTTGGAG+GGG | + | chr1.3:71134161-71134180 | MS.gene33571:CDS | 45.0% |
| ! | GCAAACTTTTACTCAGAGGC+AGG | + | chr1.3:71134384-71134403 | MS.gene33571:CDS | 45.0% |
| ! | GGAGTATCTTGGTAGTTGGA+GGG | + | chr1.3:71134160-71134179 | MS.gene33571:CDS | 45.0% |
| !! | TTCGGGAGTATCTTGGTAGT+TGG | + | chr1.3:71134156-71134175 | MS.gene33571:CDS | 45.0% |
| ACTTAACTTCCGTCGGCAGT+GGG | - | chr1.3:71134419-71134438 | None:intergenic | 50.0% | |
| TCTTCGGCCCATGCCATTAA+TGG | - | chr1.3:71133921-71133940 | None:intergenic | 50.0% | |
| ! | GCTTTGGATTGATCCCTTGC+AGG | + | chr1.3:71134323-71134342 | MS.gene33571:intron | 50.0% |
| ! | GTCAGGGAAAGTTTTGCCGA+AGG | + | chr1.3:71134022-71134041 | MS.gene33571:CDS | 50.0% |
| ! | TGCAGCAAAGGAGTCGATTC+GGG | + | chr1.3:71134139-71134158 | MS.gene33571:CDS | 50.0% |
| !! | GAGTCGATTCGGGAGTATCT+TGG | + | chr1.3:71134149-71134168 | MS.gene33571:CDS | 50.0% |
| !! | GGGAGTATCTTGGTAGTTGG+AGG | + | chr1.3:71134159-71134178 | MS.gene33571:CDS | 50.0% |
| CTTAACTTCCGTCGGCAGTG+GGG | - | chr1.3:71134418-71134437 | None:intergenic | 55.0% | |
| GACTTAACTTCCGTCGGCAG+TGG | - | chr1.3:71134420-71134439 | None:intergenic | 55.0% | |
| ! | ACGGACTGCAGATGCAGCAA+AGG | + | chr1.3:71134127-71134146 | MS.gene33571:CDS | 55.0% |
| CTGCGACTGGAAGCTTCGAG+AGG | - | chr1.3:71133837-71133856 | None:intergenic | 60.0% | |
| GCCATCAGCCCCACTGCCGA+CGG | + | chr1.3:71134407-71134426 | MS.gene33571:CDS | 70.0% | |
| TCCGTCGGCAGTGGGGCTGA+TGG | - | chr1.3:71134411-71134430 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 71132988 | 71134482 | 71132988 | ID=MS.gene33571 |
| chr1.3 | mRNA | 71132988 | 71134482 | 71132988 | ID=MS.gene33571.t1;Parent=MS.gene33571 |
| chr1.3 | exon | 71132988 | 71133042 | 71132988 | ID=MS.gene33571.t1.exon1;Parent=MS.gene33571.t1 |
| chr1.3 | CDS | 71132988 | 71133042 | 71132988 | ID=cds.MS.gene33571.t1;Parent=MS.gene33571.t1 |
| chr1.3 | exon | 71133799 | 71134205 | 71133799 | ID=MS.gene33571.t1.exon2;Parent=MS.gene33571.t1 |
| chr1.3 | CDS | 71133799 | 71134205 | 71133799 | ID=cds.MS.gene33571.t1;Parent=MS.gene33571.t1 |
| chr1.3 | exon | 71134345 | 71134482 | 71134345 | ID=MS.gene33571.t1.exon3;Parent=MS.gene33571.t1 |
| chr1.3 | CDS | 71134345 | 71134482 | 71134345 | ID=cds.MS.gene33571.t1;Parent=MS.gene33571.t1 |
| Gene Sequence |
| Protein sequence |
