Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36410.t1 | XP_024632599.1 | 99.6 | 283 | 1 | 0 | 1 | 283 | 1 | 283 | 2.00E-119 | 438.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36410.t1 | Q9C717 | 44.7 | 291 | 143 | 6 | 1 | 282 | 1 | 282 | 1.0e-39 | 165.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36410.t1 | G7ZWG9 | 99.6 | 283 | 1 | 0 | 1 | 283 | 1 | 283 | 1.5e-119 | 438.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene36410 | 0.860399 | 2.12E-63 | -1.69E-46 |
| MS.gene049159 | MS.gene36410 | 0.802593 | 5.21E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene36410 | 0.819797 | 9.62E-53 | -1.69E-46 |
| MS.gene049368 | MS.gene36410 | 0.803255 | 3.80E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene36410 | 0.817348 | 3.45E-52 | -1.69E-46 |
| MS.gene050654 | MS.gene36410 | 0.810832 | 9.47E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene36410 | 0.819997 | 8.66E-53 | -1.69E-46 |
| MS.gene051003 | MS.gene36410 | 0.804498 | 2.10E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene36410 | 0.803272 | 3.77E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene36410 | 0.816451 | 5.49E-52 | -1.69E-46 |
| MS.gene051490 | MS.gene36410 | 0.817952 | 2.52E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene36410 | 0.856496 | 3.09E-62 | -1.69E-46 |
| MS.gene051975 | MS.gene36410 | 0.834312 | 3.22E-56 | -1.69E-46 |
| MS.gene052307 | MS.gene36410 | 0.827895 | 1.21E-54 | -1.69E-46 |
| MS.gene052463 | MS.gene36410 | 0.8133 | 2.74E-51 | -1.69E-46 |
| MS.gene052516 | MS.gene36410 | 0.832093 | 1.15E-55 | -1.69E-46 |
| MS.gene052609 | MS.gene36410 | 0.825976 | 3.49E-54 | -1.69E-46 |
| MS.gene052773 | MS.gene36410 | 0.803719 | 3.05E-49 | -1.69E-46 |
| MS.gene052775 | MS.gene36410 | 0.82068 | 6.04E-53 | -1.69E-46 |
| MS.gene052776 | MS.gene36410 | 0.823713 | 1.19E-53 | -1.69E-46 |
| MS.gene053058 | MS.gene36410 | 0.811277 | 7.59E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene36410 | 0.825865 | 3.71E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene36410 | 0.832931 | 7.13E-56 | -1.69E-46 |
| MS.gene053296 | MS.gene36410 | 0.802965 | 4.37E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene36410 | 0.802338 | 5.88E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene36410 | 0.840494 | 8.41E-58 | -1.69E-46 |
| MS.gene054943 | MS.gene36410 | 0.802793 | 4.74E-49 | -1.69E-46 |
| MS.gene055313 | MS.gene36410 | 0.801147 | 1.03E-48 | -1.69E-46 |
| MS.gene055513 | MS.gene36410 | 0.88464 | 1.61E-71 | -1.69E-46 |
| MS.gene055623 | MS.gene36410 | 0.812001 | 5.28E-51 | -1.69E-46 |
| MS.gene055864 | MS.gene36410 | 0.803802 | 2.93E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene36410 | 0.800542 | 1.37E-48 | -1.69E-46 |
| MS.gene056181 | MS.gene36410 | 0.820964 | 5.19E-53 | -1.69E-46 |
| MS.gene056308 | MS.gene36410 | 0.824936 | 6.16E-54 | -1.69E-46 |
| MS.gene056507 | MS.gene36410 | 0.801492 | 8.78E-49 | -1.69E-46 |
| MS.gene056509 | MS.gene36410 | 0.807081 | 6.02E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene36410 | 0.863523 | 2.34E-64 | -1.69E-46 |
| MS.gene056776 | MS.gene36410 | 0.801238 | 9.90E-49 | -1.69E-46 |
| MS.gene056831 | MS.gene36410 | 0.818 | 2.46E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene36410 | 0.8155 | 8.96E-52 | -1.69E-46 |
| MS.gene057034 | MS.gene36410 | 0.988412 | 6.46E-174 | -1.69E-46 |
| MS.gene057102 | MS.gene36410 | 0.808398 | 3.16E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene36410 | 0.8171 | 3.93E-52 | -1.69E-46 |
| MS.gene057915 | MS.gene36410 | 0.811146 | 8.10E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene36410 | 0.844974 | 5.42E-59 | -1.69E-46 |
| MS.gene058292 | MS.gene36410 | 0.801136 | 1.04E-48 | -1.69E-46 |
| MS.gene05847 | MS.gene36410 | 0.801903 | 7.23E-49 | -1.69E-46 |
| MS.gene058976 | MS.gene36410 | 0.801891 | 7.27E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene36410 | 0.80749 | 4.93E-50 | -1.69E-46 |
| MS.gene059570 | MS.gene36410 | 0.818778 | 1.64E-52 | -1.69E-46 |
| MS.gene059842 | MS.gene36410 | 0.803966 | 2.71E-49 | -1.69E-46 |
| MS.gene059965 | MS.gene36410 | 0.857291 | 1.80E-62 | -1.69E-46 |
| MS.gene060637 | MS.gene36410 | 0.800618 | 1.32E-48 | -1.69E-46 |
| MS.gene060777 | MS.gene36410 | 0.807638 | 4.58E-50 | -1.69E-46 |
| MS.gene060933 | MS.gene36410 | 0.800654 | 1.30E-48 | -1.69E-46 |
| MS.gene060935 | MS.gene36410 | 0.805102 | 1.57E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene36410 | 0.807457 | 5.01E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene36410 | 0.804433 | 2.17E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36410.t1 | MTR_2g100240 | 99.647 | 283 | 1 | 0 | 1 | 283 | 1 | 283 | 0.0 | 575 |
| MS.gene36410.t1 | MTR_2g060900 | 36.842 | 285 | 138 | 5 | 13 | 255 | 1 | 285 | 9.91e-49 | 164 |
| MS.gene36410.t1 | MTR_7g019180 | 36.859 | 312 | 162 | 9 | 1 | 281 | 1 | 308 | 5.28e-47 | 162 |
| MS.gene36410.t1 | MTR_4g129730 | 35.065 | 231 | 149 | 1 | 32 | 262 | 1 | 230 | 1.47e-40 | 142 |
| MS.gene36410.t1 | MTR_4g129730 | 35.931 | 231 | 136 | 3 | 32 | 262 | 1 | 219 | 4.28e-40 | 140 |
| MS.gene36410.t1 | MTR_5g072760 | 31.224 | 237 | 152 | 5 | 44 | 270 | 37 | 272 | 2.53e-35 | 128 |
| MS.gene36410.t1 | MTR_5g072760 | 31.364 | 220 | 142 | 4 | 44 | 255 | 37 | 255 | 1.75e-33 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36410.t1 | AT1G55170 | 51.049 | 286 | 132 | 4 | 1 | 282 | 1 | 282 | 1.71e-86 | 260 |
| MS.gene36410.t1 | AT3G14750 | 38.696 | 230 | 131 | 3 | 37 | 257 | 63 | 291 | 1.68e-46 | 159 |
| MS.gene36410.t1 | AT1G67170 | 38.647 | 207 | 127 | 0 | 33 | 239 | 47 | 253 | 5.50e-42 | 148 |
| MS.gene36410.t1 | AT1G67170 | 38.647 | 207 | 127 | 0 | 33 | 239 | 47 | 253 | 5.50e-42 | 148 |
| MS.gene36410.t1 | AT2G30120 | 26.957 | 230 | 154 | 1 | 42 | 257 | 37 | 266 | 2.54e-21 | 91.7 |
| MS.gene36410.t1 | AT2G30120 | 26.754 | 228 | 153 | 1 | 42 | 255 | 37 | 264 | 5.92e-21 | 90.1 |
| MS.gene36410.t1 | AT2G30120 | 26.638 | 229 | 154 | 1 | 41 | 255 | 36 | 264 | 6.57e-21 | 90.5 |
| MS.gene36410.t1 | AT5G61920 | 28.351 | 194 | 139 | 0 | 28 | 221 | 37 | 230 | 1.53e-18 | 82.8 |
| MS.gene36410.t1 | AT5G61920 | 28.351 | 194 | 139 | 0 | 28 | 221 | 37 | 230 | 1.53e-18 | 82.8 |
| MS.gene36410.t1 | AT5G61920 | 28.351 | 194 | 139 | 0 | 28 | 221 | 37 | 230 | 1.53e-18 | 82.8 |
| MS.gene36410.t1 | AT5G61920 | 28.351 | 194 | 139 | 0 | 28 | 221 | 37 | 230 | 1.53e-18 | 82.8 |
| MS.gene36410.t1 | AT5G61920 | 28.351 | 194 | 139 | 0 | 28 | 221 | 37 | 230 | 1.53e-18 | 82.8 |
| MS.gene36410.t1 | AT5G61920 | 28.902 | 173 | 123 | 0 | 49 | 221 | 17 | 189 | 1.53e-16 | 76.6 |
| MS.gene36410.t1 | AT2G30120 | 27.972 | 143 | 103 | 0 | 39 | 181 | 34 | 176 | 1.12e-11 | 62.8 |
| MS.gene36410.t1 | AT2G30120 | 27.972 | 143 | 103 | 0 | 39 | 181 | 34 | 176 | 1.62e-11 | 62.0 |
| MS.gene36410.t1 | AT2G30120 | 27.972 | 143 | 103 | 0 | 39 | 181 | 34 | 176 | 1.62e-11 | 62.0 |
Find 80 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGAGAAAGGTCCTCTTTA+TGG | 0.176094 | 2.2:-2881335 | MS.gene36410:CDS |
| TTGCCTTATGGAACAAATTT+TGG | 0.192469 | 2.2:-2881504 | MS.gene36410:CDS |
| ATTCATGCAGGTTTGCCTTA+TGG | 0.235597 | 2.2:-2881516 | MS.gene36410:intron |
| ATGGGGTGGGTACTGCTTCT+AGG | 0.246552 | 2.2:-2881316 | MS.gene36410:CDS |
| CACTTACGAAAGATGTTTCT+AGG | 0.253529 | 2.2:-2882576 | MS.gene36410:CDS |
| AGTATCAAACAAGAACTTTC+TGG | 0.261139 | 2.2:-2882610 | MS.gene36410:CDS |
| CACGAAGTTTCTCAACTTCT+CGG | 0.317894 | 2.2:+2882279 | None:intergenic |
| ACCTAGCACGCATCAGTTCT+TGG | 0.336174 | 2.2:+2882497 | None:intergenic |
| ACCTCATCCAGCATTGTTAG+AGG | 0.338446 | 2.2:-2882905 | MS.gene36410:CDS |
| CCTCCATATGCAGATGGATA+TGG | 0.340583 | 2.2:-2881459 | MS.gene36410:CDS |
| CAGAGAAAGGTCCTCTTTAT+GGG | 0.349670 | 2.2:-2881334 | MS.gene36410:CDS |
| TCAATGAGATCTGAGATTGA+TGG | 0.370744 | 2.2:-2882526 | MS.gene36410:CDS |
| GGAGGCTGGTGGCGGATAAC+AGG | 0.382841 | 2.2:-2882852 | MS.gene36410:CDS |
| CTTCCGATGGATACCCTCTT+CGG | 0.387777 | 2.2:+2882974 | None:intergenic |
| GAAGGCAAACATGGAGTTCA+TGG | 0.395776 | 2.2:-2882342 | MS.gene36410:CDS |
| CTACCAAAATTTGTTCCATA+AGG | 0.410355 | 2.2:+2881501 | None:intergenic |
| CATCGTATGAATTTAGCAAT+TGG | 0.424616 | 2.2:-2882769 | MS.gene36410:CDS |
| TGAAGTTGGAGTCTGATCTT+AGG | 0.426762 | 2.2:-2882693 | MS.gene36410:CDS |
| GGTGGTGGCCCGCGAGCATA+AGG | 0.435456 | 2.2:+2882949 | None:intergenic |
| TAGCATGGATGGAAGACATT+GGG | 0.438242 | 2.2:-2882246 | MS.gene36410:CDS |
| TTTCTCAACTTCTCGGGCCA+TGG | 0.443621 | 2.2:+2882286 | None:intergenic |
| TTCCGATGGATACCCTCTTC+GGG | 0.447941 | 2.2:+2882975 | None:intergenic |
| AAACATCTTTCGTAAGTGTC+TGG | 0.450505 | 2.2:+2882581 | None:intergenic |
| GTTTAGGCTGCTGCAGAGAA+AGG | 0.464656 | 2.2:-2881347 | MS.gene36410:intron |
| GATGGAAGACATTGGGGAGC+TGG | 0.465511 | 2.2:-2882239 | MS.gene36410:intron |
| GTATCAAACAAGAACTTTCT+GGG | 0.473347 | 2.2:-2882609 | MS.gene36410:CDS |
| TCAATCTCAGATCTCATTGA+AGG | 0.475047 | 2.2:+2882529 | None:intergenic |
| ACGAAGTTTCTCAACTTCTC+GGG | 0.483936 | 2.2:+2882280 | None:intergenic |
| AGCTCTTCCTCTAACAATGC+TGG | 0.487736 | 2.2:+2882898 | None:intergenic |
| ACACCATATCCATCTGCATA+TGG | 0.495250 | 2.2:+2881456 | None:intergenic |
| GCGAGACCTTGCAGCTGCGA+AGG | 0.508426 | 2.2:-2882800 | MS.gene36410:CDS |
| TATGGTGGATTATGAAAAGA+AGG | 0.509898 | 2.2:-2882360 | MS.gene36410:CDS |
| TACCCTCTTCGGGAACTCAT+TGG | 0.513298 | 2.2:+2882985 | None:intergenic |
| TCCTCTAACAATGCTGGATG+AGG | 0.514770 | 2.2:+2882904 | None:intergenic |
| TGCTGTCGTGGCATTGGTGG+TGG | 0.516987 | 2.2:+2882934 | None:intergenic |
| TATCCATCTGCATATGGAGG+TGG | 0.517988 | 2.2:+2881462 | None:intergenic |
| GCTGAGCTTGCTAGCATGGA+TGG | 0.521001 | 2.2:-2882257 | MS.gene36410:CDS |
| TCGTGCTGAGCTTGCTAGCA+TGG | 0.521988 | 2.2:-2882261 | MS.gene36410:CDS |
| CTGAACATGAGATGCATTCG+AGG | 0.524074 | 2.2:-2882735 | MS.gene36410:CDS |
| GCAGTACCCACCCCATAAAG+AGG | 0.528840 | 2.2:+2881323 | None:intergenic |
| AGACCTTGCAGCTGCGAAGG+AGG | 0.529458 | 2.2:-2882797 | MS.gene36410:CDS |
| CATGGAACAGAGGCAGTCAA+TGG | 0.533149 | 2.2:-2882324 | MS.gene36410:CDS |
| TGTATAACTTCATTCTTCAA+CGG | 0.535567 | 2.2:+2882661 | None:intergenic |
| GGAATATGCTGTCGTGGCAT+TGG | 0.548596 | 2.2:+2882928 | None:intergenic |
| TCTAACAATGCTGGATGAGG+TGG | 0.550555 | 2.2:+2882907 | None:intergenic |
| CCTCTTCGGGAACTCATTGG+TGG | 0.551456 | 2.2:+2882988 | None:intergenic |
| CTAGCATGGATGGAAGACAT+TGG | 0.560779 | 2.2:-2882247 | MS.gene36410:CDS |
| TCGGAAGGTCCTTATGCTCG+CGG | 0.566608 | 2.2:-2882958 | MS.gene36410:CDS |
| ACCAAGAACTGATGCGTGCT+AGG | 0.567292 | 2.2:-2882498 | MS.gene36410:intron |
| TTATGAAAAGAAGGCAAACA+TGG | 0.573229 | 2.2:-2882351 | MS.gene36410:CDS |
| GCTCCTCCTTCGCAGCTGCA+AGG | 0.574836 | 2.2:+2882794 | None:intergenic |
| ATTCAACGACGGTTTGAGCG+AGG | 0.579107 | 2.2:+2881278 | None:intergenic |
| AAAGGTCCTCTTTATGGGGT+GGG | 0.581180 | 2.2:-2881329 | MS.gene36410:CDS |
| GAAAGGTCCTCTTTATGGGG+TGG | 0.586390 | 2.2:-2881330 | MS.gene36410:CDS |
| ATATGCTGTCGTGGCATTGG+TGG | 0.591214 | 2.2:+2882931 | None:intergenic |
| ACAGGAGGTTGATTGATGAT+CGG | 0.594043 | 2.2:-2882834 | MS.gene36410:CDS |
| TTCCCACCTCCATATGCAGA+TGG | 0.594536 | 2.2:-2881465 | MS.gene36410:CDS |
| ATCCATCTGCATATGGAGGT+GGG | 0.596363 | 2.2:+2881463 | None:intergenic |
| CGGAAGGTCCTTATGCTCGC+GGG | 0.597736 | 2.2:-2882957 | MS.gene36410:CDS |
| CAAACAAGAACTTTCTGGGA+AGG | 0.599275 | 2.2:-2882605 | MS.gene36410:CDS |
| TGAAATGAGGAGGCTGGTGG+CGG | 0.604523 | 2.2:-2882860 | MS.gene36410:CDS |
| GCATGCTGAAATGAGGAGGC+TGG | 0.605896 | 2.2:-2882866 | MS.gene36410:CDS |
| GGCTGGTGGCGGATAACAGG+AGG | 0.608308 | 2.2:-2882849 | MS.gene36410:CDS |
| CACCAATGAGTTCCCGAAGA+GGG | 0.614590 | 2.2:-2882987 | MS.gene36410:CDS |
| CGAGCATAAGGACCTTCCGA+TGG | 0.617038 | 2.2:+2882961 | None:intergenic |
| CGAAGAGGGTATCCATCGGA+AGG | 0.623087 | 2.2:-2882973 | MS.gene36410:CDS |
| AAGTGCAGCATGCTGAAATG+AGG | 0.630681 | 2.2:-2882873 | MS.gene36410:CDS |
| TTCCCGAAGAGGGTATCCAT+CGG | 0.640372 | 2.2:-2882977 | MS.gene36410:CDS |
| AGCATGGATGGAAGACATTG+GGG | 0.653311 | 2.2:-2882245 | MS.gene36410:CDS |
| TGAGGTGGAATATGCTGTCG+TGG | 0.657020 | 2.2:+2882922 | None:intergenic |
| CCATATCCATCTGCATATGG+AGG | 0.657742 | 2.2:+2881459 | None:intergenic |
| TGCTGAAATGAGGAGGCTGG+TGG | 0.673111 | 2.2:-2882863 | MS.gene36410:CDS |
| TGAACATGAGATGCATTCGA+GGG | 0.676175 | 2.2:-2882734 | MS.gene36410:CDS |
| AGAGAAAGGTCCTCTTTATG+GGG | 0.677550 | 2.2:-2881333 | MS.gene36410:CDS |
| TGCAGCATGCTGAAATGAGG+AGG | 0.680683 | 2.2:-2882870 | MS.gene36410:CDS |
| CAATCACTTAGATTCAACGA+CGG | 0.682596 | 2.2:+2881267 | None:intergenic |
| TTGGTGGCTCTCTATGAACA+CGG | 0.684269 | 2.2:+2883004 | None:intergenic |
| ACATGGAGTTCATGGAACAG+AGG | 0.685058 | 2.2:-2882334 | MS.gene36410:CDS |
| CCACCAATGAGTTCCCGAAG+AGG | 0.693852 | 2.2:-2882988 | MS.gene36410:CDS |
| AGATGGATATGGTGTTCACA+TGG | 0.705947 | 2.2:-2881448 | MS.gene36410:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAAAAGACATGAAAAA+CGG | - | chr2.2:2882235-2882254 | MS.gene36410:intron | 15.0% |
| !!! | ATTTTTGTTTTATAGAACTA+TGG | - | chr2.2:2881920-2881939 | MS.gene36410:intron | 15.0% |
| !! | AATGAAATGACATGAATAAT+AGG | - | chr2.2:2882204-2882223 | MS.gene36410:intron | 20.0% |
| !! | ATCCAATTAACACAAATAAT+AGG | + | chr2.2:2882632-2882651 | None:intergenic | 20.0% |
| !! | ATCCTATTATTTGTGTTAAT+TGG | - | chr2.2:2882627-2882646 | MS.gene36410:CDS | 20.0% |
| !!! | TGTTGATAAAAATATGAAGT+TGG | - | chr2.2:2881591-2881610 | MS.gene36410:intron | 20.0% |
| !!! | TTTTGTGTATTATGTGATTA+CGG | + | chr2.2:2882334-2882353 | None:intergenic | 20.0% |
| !!! | TTTTTAGAATTTAAGGCAAT+TGG | - | chr2.2:2882362-2882381 | MS.gene36410:CDS | 20.0% |
| ! | AATCACATAATACACAAAAG+TGG | - | chr2.2:2882335-2882354 | MS.gene36410:CDS | 25.0% |
| ! | AATGAAGCAAACGTTAAAAA+AGG | + | chr2.2:2882765-2882784 | None:intergenic | 25.0% |
| ! | ATCTTTCAGACAATTATGAA+GGG | + | chr2.2:2882293-2882312 | None:intergenic | 25.0% |
| ! | ATGAAGCAAACGTTAAAAAA+GGG | + | chr2.2:2882764-2882783 | None:intergenic | 25.0% |
| ! | TGTATAACTTCATTCTTCAA+CGG | + | chr2.2:2881640-2881659 | None:intergenic | 25.0% |
| !! | GGTCTAAAATTATTGTGTTA+AGG | + | chr2.2:2882886-2882905 | None:intergenic | 25.0% |
| !!! | AGAATTTTAGTATTCATCGA+GGG | - | chr2.2:2882481-2882500 | MS.gene36410:intron | 25.0% |
| !!! | TGGCAGTTTTTTAGAATTTA+AGG | - | chr2.2:2882355-2882374 | MS.gene36410:CDS | 25.0% |
| !!! | TTTGTTTTATAGAACTATGG+TGG | - | chr2.2:2881923-2881942 | MS.gene36410:intron | 25.0% |
| AAGCAAAGTAAATGAAACCT+TGG | + | chr2.2:2882923-2882942 | None:intergenic | 30.0% | |
| AAGGATGATAAATTCTGCAA+AGG | + | chr2.2:2882105-2882124 | None:intergenic | 30.0% | |
| AGTATCAAACAAGAACTTTC+TGG | - | chr2.2:2881688-2881707 | MS.gene36410:intron | 30.0% | |
| ATAATTGTCTGAAAGATGGT+TGG | - | chr2.2:2882296-2882315 | MS.gene36410:CDS | 30.0% | |
| CATCGTATGAATTTAGCAAT+TGG | - | chr2.2:2881529-2881548 | MS.gene36410:intron | 30.0% | |
| CATCTTTCAGACAATTATGA+AGG | + | chr2.2:2882294-2882313 | None:intergenic | 30.0% | |
| CTTCATAATTGTCTGAAAGA+TGG | - | chr2.2:2882292-2882311 | MS.gene36410:CDS | 30.0% | |
| GAGTTAAGGTGATTAAGAAT+AGG | + | chr2.2:2882417-2882436 | None:intergenic | 30.0% | |
| GCTATGCTAGTAAATACATA+TGG | + | chr2.2:2882140-2882159 | None:intergenic | 30.0% | |
| GTATCAAACAAGAACTTTCT+GGG | - | chr2.2:2881689-2881708 | MS.gene36410:intron | 30.0% | |
| TAATTGTCTGAAAGATGGTT+GGG | - | chr2.2:2882297-2882316 | MS.gene36410:CDS | 30.0% | |
| TATAGACACATCATGATGTT+TGG | - | chr2.2:2882662-2882681 | MS.gene36410:CDS | 30.0% | |
| TGAAGCAAACGTTAAAAAAG+GGG | + | chr2.2:2882763-2882782 | None:intergenic | 30.0% | |
| TTATGAAAAGAAGGCAAACA+TGG | - | chr2.2:2881947-2881966 | MS.gene36410:intron | 30.0% | |
| ! | ATATCTTTCGATCTTTTGAC+TGG | - | chr2.2:2882534-2882553 | MS.gene36410:CDS | 30.0% |
| ! | CTACCAAAATTTGTTCCATA+AGG | + | chr2.2:2882800-2882819 | None:intergenic | 30.0% |
| ! | TCTATCTTTAAGCATCCTTT+TGG | - | chr2.2:2881856-2881875 | MS.gene36410:intron | 30.0% |
| ! | TTGCCTTATGGAACAAATTT+TGG | - | chr2.2:2882794-2882813 | MS.gene36410:CDS | 30.0% |
| !! | CAGAATTTTAGTATTCATCG+AGG | - | chr2.2:2882480-2882499 | MS.gene36410:intron | 30.0% |
| !! | CTATGTGATGATTTTGAGAA+CGG | - | chr2.2:2882457-2882476 | MS.gene36410:intron | 30.0% |
| !! | TATGGTGGATTATGAAAAGA+AGG | - | chr2.2:2881938-2881957 | MS.gene36410:intron | 30.0% |
| AAACATCTTTCGTAAGTGTC+TGG | + | chr2.2:2881720-2881739 | None:intergenic | 35.0% | |
| AATTGTCTGAAAGATGGTTG+GGG | - | chr2.2:2882298-2882317 | MS.gene36410:CDS | 35.0% | |
| CACTTACGAAAGATGTTTCT+AGG | - | chr2.2:2881722-2881741 | MS.gene36410:intron | 35.0% | |
| GGAGTTCATTAGTGATAACA+GGG | - | chr2.2:2882502-2882521 | MS.gene36410:CDS | 35.0% | |
| TCAATCTCAGATCTCATTGA+AGG | + | chr2.2:2881772-2881791 | None:intergenic | 35.0% | |
| ! | TCAATGAGATCTGAGATTGA+TGG | - | chr2.2:2881772-2881791 | MS.gene36410:intron | 35.0% |
| ! | TCTTTAAGCATCCTTTTGGT+TGG | - | chr2.2:2881860-2881879 | MS.gene36410:intron | 35.0% |
| ! | TGCTACAGTATCTGCATTTT+TGG | + | chr2.2:2882608-2882627 | None:intergenic | 35.0% |
| ! | TTGTGGATTGATTGCTAACA+CGG | - | chr2.2:2881824-2881843 | MS.gene36410:intron | 35.0% |
| !! | AACAAATTTTGGTAGTCCAG+AGG | - | chr2.2:2882805-2882824 | MS.gene36410:CDS | 35.0% |
| !! | ACAAATTTTGGTAGTCCAGA+GGG | - | chr2.2:2882806-2882825 | MS.gene36410:CDS | 35.0% |
| !! | CTTTAAGCATCCTTTTGGTT+GGG | - | chr2.2:2881861-2881880 | MS.gene36410:intron | 35.0% |
| AACGTTTGCTTCATTCATGC+AGG | - | chr2.2:2882770-2882789 | MS.gene36410:CDS | 40.0% | |
| ACACCATATCCATCTGCATA+TGG | + | chr2.2:2882845-2882864 | None:intergenic | 40.0% | |
| ACCTTGGAAAATTGAATGCG+AGG | + | chr2.2:2882907-2882926 | None:intergenic | 40.0% | |
| ACGAAGTTTCTCAACTTCTC+GGG | + | chr2.2:2882021-2882040 | None:intergenic | 40.0% | |
| AGAGAAAGGTCCTCTTTATG+GGG | - | chr2.2:2882965-2882984 | MS.gene36410:CDS | 40.0% | |
| AGATGGATATGGTGTTCACA+TGG | - | chr2.2:2882850-2882869 | MS.gene36410:CDS | 40.0% | |
| ATGCAGAAATCCCAACCAAA+AGG | + | chr2.2:2881874-2881893 | None:intergenic | 40.0% | |
| ATTCATGCAGGTTTGCCTTA+TGG | - | chr2.2:2882782-2882801 | MS.gene36410:CDS | 40.0% | |
| ATTGTCTGAAAGATGGTTGG+GGG | - | chr2.2:2882299-2882318 | MS.gene36410:CDS | 40.0% | |
| CACGAAGTTTCTCAACTTCT+CGG | + | chr2.2:2882022-2882041 | None:intergenic | 40.0% | |
| CAGAGAAAGGTCCTCTTTAT+GGG | - | chr2.2:2882964-2882983 | MS.gene36410:CDS | 40.0% | |
| CATATGGAGTTAACGACTGA+AGG | + | chr2.2:2882124-2882143 | None:intergenic | 40.0% | |
| CTTTGCTTGTGCTTCTGTTT+AGG | - | chr2.2:2882935-2882954 | MS.gene36410:CDS | 40.0% | |
| GCAGTCAATGGAGAAAAACA+TGG | - | chr2.2:2881986-2882005 | MS.gene36410:intron | 40.0% | |
| GGAGAAAAACATGGTTTCCA+TGG | - | chr2.2:2881995-2882014 | MS.gene36410:intron | 40.0% | |
| GGGAGTTCATTAGTGATAAC+AGG | - | chr2.2:2882501-2882520 | MS.gene36410:CDS | 40.0% | |
| TAGACAAGTTAGAGAAAGCG+TGG | + | chr2.2:2882440-2882459 | None:intergenic | 40.0% | |
| TAGCATGGATGGAAGACATT+GGG | - | chr2.2:2882052-2882071 | MS.gene36410:intron | 40.0% | |
| TGAACATGAGATGCATTCGA+GGG | - | chr2.2:2881564-2881583 | MS.gene36410:intron | 40.0% | |
| TGAAGTTGGAGTCTGATCTT+AGG | - | chr2.2:2881605-2881624 | MS.gene36410:intron | 40.0% | |
| ! | ACAGGAGGTTGATTGATGAT+CGG | - | chr2.2:2881464-2881483 | MS.gene36410:CDS | 40.0% |
| ! | ACCTCGCATTCAATTTTCCA+AGG | - | chr2.2:2882903-2882922 | MS.gene36410:CDS | 40.0% |
| ! | AGACAAGTTAGAGAAAGCGT+GGG | + | chr2.2:2882439-2882458 | None:intergenic | 40.0% |
| ! | CAAACAAGAACTTTCTGGGA+AGG | - | chr2.2:2881693-2881712 | MS.gene36410:intron | 40.0% |
| !! | AAATTTTGGTAGTCCAGAGG+GGG | - | chr2.2:2882808-2882827 | MS.gene36410:CDS | 40.0% |
| !! | CAAATTTTGGTAGTCCAGAG+GGG | - | chr2.2:2882807-2882826 | MS.gene36410:CDS | 40.0% |
| AAAGGTCCTCTTTATGGGGT+GGG | - | chr2.2:2882969-2882988 | MS.gene36410:CDS | 45.0% | |
| AAGTGCAGCATGCTGAAATG+AGG | - | chr2.2:2881425-2881444 | MS.gene36410:intron | 45.0% | |
| ACATGGAGTTCATGGAACAG+AGG | - | chr2.2:2881964-2881983 | MS.gene36410:intron | 45.0% | |
| ACCTCATCCAGCATTGTTAG+AGG | - | chr2.2:2881393-2881412 | MS.gene36410:intron | 45.0% | |
| AGCATGGATGGAAGACATTG+GGG | - | chr2.2:2882053-2882072 | MS.gene36410:intron | 45.0% | |
| AGCTCTTCCTCTAACAATGC+TGG | + | chr2.2:2881403-2881422 | None:intergenic | 45.0% | |
| ATCCATCTGCATATGGAGGT+GGG | + | chr2.2:2882838-2882857 | None:intergenic | 45.0% | |
| ATCCCACAAGGTGTATACGT+AGG | - | chr2.2:2882576-2882595 | MS.gene36410:CDS | 45.0% | |
| ATCCCTACGTATACACCTTG+TGG | + | chr2.2:2882582-2882601 | None:intergenic | 45.0% | |
| CCATATCCATCTGCATATGG+AGG | + | chr2.2:2882842-2882861 | None:intergenic | 45.0% | |
| CCTCCATATGCAGATGGATA+TGG | - | chr2.2:2882839-2882858 | MS.gene36410:CDS | 45.0% | |
| CTAGCATGGATGGAAGACAT+TGG | - | chr2.2:2882051-2882070 | MS.gene36410:intron | 45.0% | |
| CTGAACATGAGATGCATTCG+AGG | - | chr2.2:2881563-2881582 | MS.gene36410:intron | 45.0% | |
| GAAGGCAAACATGGAGTTCA+TGG | - | chr2.2:2881956-2881975 | MS.gene36410:intron | 45.0% | |
| GCAGAGAAAGGTCCTCTTTA+TGG | - | chr2.2:2882963-2882982 | MS.gene36410:CDS | 45.0% | |
| TATCCATCTGCATATGGAGG+TGG | + | chr2.2:2882839-2882858 | None:intergenic | 45.0% | |
| TCCCACAAGGTGTATACGTA+GGG | - | chr2.2:2882577-2882596 | MS.gene36410:CDS | 45.0% | |
| TCCCTACGTATACACCTTGT+GGG | + | chr2.2:2882581-2882600 | None:intergenic | 45.0% | |
| TCCTCTAACAATGCTGGATG+AGG | + | chr2.2:2881397-2881416 | None:intergenic | 45.0% | |
| TCTAACAATGCTGGATGAGG+TGG | + | chr2.2:2881394-2881413 | None:intergenic | 45.0% | |
| ! | TAGAGAAAGCGTGGGAGTTA+AGG | + | chr2.2:2882431-2882450 | None:intergenic | 45.0% |
| ! | TTGGTGGCTCTCTATGAACA+CGG | + | chr2.2:2881297-2881316 | None:intergenic | 45.0% |
| !! | AATTTTGGTAGTCCAGAGGG+GGG | - | chr2.2:2882809-2882828 | MS.gene36410:CDS | 45.0% |
| !! | CTTTTGACTGGCAGTGTTGA+GGG | - | chr2.2:2882546-2882565 | MS.gene36410:CDS | 45.0% |
| !! | TCTTTTGACTGGCAGTGTTG+AGG | - | chr2.2:2882545-2882564 | MS.gene36410:CDS | 45.0% |
| ACCAAGAACTGATGCGTGCT+AGG | - | chr2.2:2881800-2881819 | MS.gene36410:intron | 50.0% | |
| ACCTAGCACGCATCAGTTCT+TGG | + | chr2.2:2881804-2881823 | None:intergenic | 50.0% | |
| ACTGATGCGTGCTAGGTTTG+TGG | - | chr2.2:2881807-2881826 | MS.gene36410:intron | 50.0% | |
| CACCAATGAGTTCCCGAAGA+GGG | - | chr2.2:2881311-2881330 | MS.gene36410:CDS | 50.0% | |
| CATGGAACAGAGGCAGTCAA+TGG | - | chr2.2:2881974-2881993 | MS.gene36410:intron | 50.0% | |
| CTTCCGATGGATACCCTCTT+CGG | + | chr2.2:2881327-2881346 | None:intergenic | 50.0% | |
| GAAAGGTCCTCTTTATGGGG+TGG | - | chr2.2:2882968-2882987 | MS.gene36410:CDS | 50.0% | |
| GGAATATGCTGTCGTGGCAT+TGG | + | chr2.2:2881373-2881392 | None:intergenic | 50.0% | |
| GTTTAGGCTGCTGCAGAGAA+AGG | - | chr2.2:2882951-2882970 | MS.gene36410:CDS | 50.0% | |
| TACCCTCTTCGGGAACTCAT+TGG | + | chr2.2:2881316-2881335 | None:intergenic | 50.0% | |
| TGAGGTGGAATATGCTGTCG+TGG | + | chr2.2:2881379-2881398 | None:intergenic | 50.0% | |
| TGCAGCATGCTGAAATGAGG+AGG | - | chr2.2:2881428-2881447 | MS.gene36410:intron | 50.0% | |
| TTCCCACCTCCATATGCAGA+TGG | - | chr2.2:2882833-2882852 | MS.gene36410:CDS | 50.0% | |
| TTCCGATGGATACCCTCTTC+GGG | + | chr2.2:2881326-2881345 | None:intergenic | 50.0% | |
| TTTCTCAACTTCTCGGGCCA+TGG | + | chr2.2:2882015-2882034 | None:intergenic | 50.0% | |
| ! | ATATGCTGTCGTGGCATTGG+TGG | + | chr2.2:2881370-2881389 | None:intergenic | 50.0% |
| !! | TTCCCGAAGAGGGTATCCAT+CGG | - | chr2.2:2881321-2881340 | MS.gene36410:CDS | 50.0% |
| CCACCAATGAGTTCCCGAAG+AGG | - | chr2.2:2881310-2881329 | MS.gene36410:CDS | 55.0% | |
| CCTCTTCGGGAACTCATTGG+TGG | + | chr2.2:2881313-2881332 | None:intergenic | 55.0% | |
| CGAGCATAAGGACCTTCCGA+TGG | + | chr2.2:2881340-2881359 | None:intergenic | 55.0% | |
| GATGGAAGACATTGGGGAGC+TGG | - | chr2.2:2882059-2882078 | MS.gene36410:intron | 55.0% | |
| GCAGTACCCACCCCATAAAG+AGG | + | chr2.2:2882978-2882997 | None:intergenic | 55.0% | |
| GCATGCTGAAATGAGGAGGC+TGG | - | chr2.2:2881432-2881451 | MS.gene36410:intron | 55.0% | |
| TCGGAAGGTCCTTATGCTCG+CGG | - | chr2.2:2881340-2881359 | MS.gene36410:CDS | 55.0% | |
| TGAAATGAGGAGGCTGGTGG+CGG | - | chr2.2:2881438-2881457 | MS.gene36410:intron | 55.0% | |
| TGCTGAAATGAGGAGGCTGG+TGG | - | chr2.2:2881435-2881454 | MS.gene36410:intron | 55.0% | |
| ! | ATGGGGTGGGTACTGCTTCT+AGG | - | chr2.2:2882982-2883001 | MS.gene36410:CDS | 55.0% |
| ! | TTGACTGGCAGTGTTGAGGG+TGG | - | chr2.2:2882549-2882568 | MS.gene36410:CDS | 55.0% |
| !! | CGAAGAGGGTATCCATCGGA+AGG | - | chr2.2:2881325-2881344 | MS.gene36410:CDS | 55.0% |
| !! | GCTGAGCTTGCTAGCATGGA+TGG | - | chr2.2:2882041-2882060 | MS.gene36410:intron | 55.0% |
| !! | TCGTGCTGAGCTTGCTAGCA+TGG | - | chr2.2:2882037-2882056 | MS.gene36410:intron | 55.0% |
| AGACCTTGCAGCTGCGAAGG+AGG | - | chr2.2:2881501-2881520 | MS.gene36410:CDS | 60.0% | |
| CGGAAGGTCCTTATGCTCGC+GGG | - | chr2.2:2881341-2881360 | MS.gene36410:CDS | 60.0% | |
| ! | ACTGGCAGTGTTGAGGGTGG+TGG | - | chr2.2:2882552-2882571 | MS.gene36410:CDS | 60.0% |
| ! | GAGGGTGGTGGTATCCCACA+AGG | - | chr2.2:2882564-2882583 | MS.gene36410:CDS | 60.0% |
| !! | TGCTGTCGTGGCATTGGTGG+TGG | + | chr2.2:2881367-2881386 | None:intergenic | 60.0% |
| GCGAGACCTTGCAGCTGCGA+AGG | - | chr2.2:2881498-2881517 | MS.gene36410:CDS | 65.0% | |
| GCTCCTCCTTCGCAGCTGCA+AGG | + | chr2.2:2881507-2881526 | None:intergenic | 65.0% | |
| !! | GGAGGCTGGTGGCGGATAAC+AGG | - | chr2.2:2881446-2881465 | MS.gene36410:intron | 65.0% |
| !! | GGCTGGTGGCGGATAACAGG+AGG | - | chr2.2:2881449-2881468 | MS.gene36410:CDS | 65.0% |
| GGAGGTGGGAAACCCCCCTC+TGG | + | chr2.2:2882824-2882843 | None:intergenic | 70.0% | |
| ! | GGTGGTGGCCCGCGAGCATA+AGG | + | chr2.2:2881352-2881371 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 2881280 | 2883040 | 2881280 | ID=MS.gene36410 |
| chr2.2 | mRNA | 2881280 | 2883040 | 2881280 | ID=MS.gene36410.t1;Parent=MS.gene36410 |
| chr2.2 | exon | 2882499 | 2883040 | 2882499 | ID=MS.gene36410.t1.exon1;Parent=MS.gene36410.t1 |
| chr2.2 | CDS | 2882499 | 2883040 | 2882499 | ID=cds.MS.gene36410.t1;Parent=MS.gene36410.t1 |
| chr2.2 | exon | 2882240 | 2882385 | 2882240 | ID=MS.gene36410.t1.exon2;Parent=MS.gene36410.t1 |
| chr2.2 | CDS | 2882240 | 2882385 | 2882240 | ID=cds.MS.gene36410.t1;Parent=MS.gene36410.t1 |
| chr2.2 | exon | 2881449 | 2881528 | 2881449 | ID=MS.gene36410.t1.exon3;Parent=MS.gene36410.t1 |
| chr2.2 | CDS | 2881449 | 2881528 | 2881449 | ID=cds.MS.gene36410.t1;Parent=MS.gene36410.t1 |
| chr2.2 | exon | 2881280 | 2881363 | 2881280 | ID=MS.gene36410.t1.exon4;Parent=MS.gene36410.t1 |
| chr2.2 | CDS | 2881280 | 2881363 | 2881280 | ID=cds.MS.gene36410.t1;Parent=MS.gene36410.t1 |
| Gene Sequence |
| Protein sequence |
