Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39846.t1 | XP_003616946.1 | 96.9 | 318 | 9 | 1 | 1 | 317 | 1 | 318 | 5.30E-161 | 577 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39846.t1 | G7K7M0 | 96.9 | 318 | 9 | 1 | 1 | 317 | 1 | 318 | 3.8e-161 | 577.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene39846 | 0.837805 | 4.18E-57 | -1.69E-46 |
| MS.gene049382 | MS.gene39846 | 0.819717 | 1.00E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene39846 | 0.811271 | 7.61E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene39846 | 0.812807 | 3.52E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene39846 | 0.822982 | 1.77E-53 | -1.69E-46 |
| MS.gene050303 | MS.gene39846 | 0.810056 | 1.39E-50 | -1.69E-46 |
| MS.gene050438 | MS.gene39846 | 0.803892 | 2.81E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene39846 | 0.805913 | 1.06E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene39846 | -0.817477 | 3.23E-52 | -1.69E-46 |
| MS.gene050724 | MS.gene39846 | 0.800265 | 1.56E-48 | -1.69E-46 |
| MS.gene050780 | MS.gene39846 | 0.810083 | 1.37E-50 | -1.69E-46 |
| MS.gene050815 | MS.gene39846 | 0.832881 | 7.34E-56 | -1.69E-46 |
| MS.gene051243 | MS.gene39846 | 0.82601 | 3.43E-54 | -1.69E-46 |
| MS.gene051328 | MS.gene39846 | 0.827878 | 1.23E-54 | -1.69E-46 |
| MS.gene051344 | MS.gene39846 | 0.807167 | 5.77E-50 | -1.69E-46 |
| MS.gene051349 | MS.gene39846 | 0.810677 | 1.02E-50 | -1.69E-46 |
| MS.gene052012 | MS.gene39846 | 0.8157 | 8.08E-52 | -1.69E-46 |
| MS.gene052020 | MS.gene39846 | 0.800013 | 1.76E-48 | -1.69E-46 |
| MS.gene052286 | MS.gene39846 | 0.800779 | 1.23E-48 | -1.69E-46 |
| MS.gene052665 | MS.gene39846 | 0.80505 | 1.61E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene39846 | 0.807661 | 4.53E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene39846 | 0.819683 | 1.02E-52 | -1.69E-46 |
| MS.gene053008 | MS.gene39846 | 0.830894 | 2.27E-55 | -1.69E-46 |
| MS.gene054184 | MS.gene39846 | 0.818825 | 1.60E-52 | -1.69E-46 |
| MS.gene054185 | MS.gene39846 | 0.826417 | 2.74E-54 | -1.69E-46 |
| MS.gene054472 | MS.gene39846 | 0.815699 | 8.08E-52 | -1.69E-46 |
| MS.gene054657 | MS.gene39846 | 0.801747 | 7.78E-49 | -1.69E-46 |
| MS.gene054658 | MS.gene39846 | 0.810955 | 8.91E-51 | -1.69E-46 |
| MS.gene05510 | MS.gene39846 | 0.826535 | 2.57E-54 | -1.69E-46 |
| MS.gene05517 | MS.gene39846 | 0.814432 | 1.55E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene39846 | 0.809227 | 2.10E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene39846 | 0.814906 | 1.21E-51 | -1.69E-46 |
| MS.gene056760 | MS.gene39846 | 0.814006 | 1.92E-51 | -1.69E-46 |
| MS.gene057140 | MS.gene39846 | 0.82174 | 3.44E-53 | -1.69E-46 |
| MS.gene057200 | MS.gene39846 | 0.812334 | 4.47E-51 | -1.69E-46 |
| MS.gene057260 | MS.gene39846 | 0.801573 | 8.45E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene39846 | 0.828406 | 9.15E-55 | -1.69E-46 |
| MS.gene058146 | MS.gene39846 | 0.815916 | 7.23E-52 | -1.69E-46 |
| MS.gene058906 | MS.gene39846 | 0.82266 | 2.10E-53 | -1.69E-46 |
| MS.gene059830 | MS.gene39846 | 0.804788 | 1.83E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene39846 | 0.829379 | 5.32E-55 | -1.69E-46 |
| MS.gene060310 | MS.gene39846 | 0.81887 | 1.56E-52 | -1.69E-46 |
| MS.gene060322 | MS.gene39846 | 0.818723 | 1.69E-52 | -1.69E-46 |
| MS.gene060637 | MS.gene39846 | 0.801202 | 1.01E-48 | -1.69E-46 |
| MS.gene060683 | MS.gene39846 | 0.83436 | 3.14E-56 | -1.69E-46 |
| MS.gene060685 | MS.gene39846 | 0.82736 | 1.63E-54 | -1.69E-46 |
| MS.gene060802 | MS.gene39846 | 0.840219 | 9.92E-58 | -1.69E-46 |
| MS.gene060803 | MS.gene39846 | 0.863058 | 3.26E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39846.t1 | MTR_5g086010 | 97.170 | 318 | 8 | 1 | 1 | 317 | 1 | 318 | 0.0 | 626 |
| MS.gene39846.t1 | MTR_5g087440 | 94.654 | 318 | 16 | 1 | 1 | 317 | 1 | 318 | 0.0 | 605 |
| MS.gene39846.t1 | MTR_5g086010 | 100.000 | 231 | 0 | 0 | 87 | 317 | 1 | 231 | 3.75e-168 | 466 |
| MS.gene39846.t1 | MTR_5g087440 | 99.134 | 231 | 2 | 0 | 87 | 317 | 1 | 231 | 5.56e-167 | 463 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39846.t1 | AT5G17460 | 67.105 | 304 | 88 | 2 | 26 | 317 | 6 | 309 | 1.77e-137 | 392 |
| MS.gene39846.t1 | AT5G17460 | 67.105 | 304 | 88 | 2 | 26 | 317 | 6 | 309 | 1.77e-137 | 392 |
| MS.gene39846.t1 | AT5G17460 | 67.105 | 304 | 88 | 2 | 26 | 317 | 6 | 309 | 1.77e-137 | 392 |
| MS.gene39846.t1 | AT5G17460 | 67.105 | 304 | 88 | 2 | 26 | 317 | 6 | 309 | 1.77e-137 | 392 |
| MS.gene39846.t1 | AT5G17460 | 75.214 | 234 | 55 | 1 | 87 | 317 | 1 | 234 | 3.00e-121 | 348 |
Find 58 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCCTGGCTTGCTTTCC+TGG | 0.172281 | 5.4:-68751012 | None:intergenic |
| TCAGGTGAGAATTTGTAATT+TGG | 0.193466 | 5.4:-68751240 | None:intergenic |
| TCAGAGATGGTTCTGTATTT+TGG | 0.206723 | 5.4:-68750952 | None:intergenic |
| CTAGAAACAAATTTACTCTT+TGG | 0.277269 | 5.4:-68751276 | None:intergenic |
| GCATTTGAAAACGTTGTTTC+GGG | 0.294930 | 5.4:+68751132 | MS.gene39846:CDS |
| AGTGATCTAGATATTCTAAT+TGG | 0.302629 | 5.4:+68751108 | MS.gene39846:CDS |
| AACTGAATATTTAGCTGTTT+AGG | 0.304869 | 5.4:-68751186 | None:intergenic |
| AGTAGTAGCCAATGTGGTTT+TGG | 0.306418 | 5.4:-68749784 | None:intergenic |
| CGCAAGCCATATGATCTCTT+TGG | 0.334723 | 5.4:+68750583 | MS.gene39846:CDS |
| CTTCTTCCAAAGAGATCATA+TGG | 0.358364 | 5.4:-68750589 | None:intergenic |
| ATTCTCAACTGCAATCTTCC+TGG | 0.359093 | 5.4:-68751025 | None:intergenic |
| TGTCGCCAGGAAAGCAAGCC+AGG | 0.360787 | 5.4:+68751007 | MS.gene39846:CDS |
| AGCATTTGAAAACGTTGTTT+CGG | 0.382284 | 5.4:+68751131 | MS.gene39846:CDS |
| GAACCTGAGGAGCTGTCGCC+AGG | 0.445281 | 5.4:+68750994 | MS.gene39846:CDS |
| CAGCTCCTCAGGTTCTTGTT+CGG | 0.447573 | 5.4:-68750986 | None:intergenic |
| TTTCCTGGCGACAGCTCCTC+AGG | 0.452743 | 5.4:-68750997 | None:intergenic |
| CTCTTTGGAAGAAGAAGACC+AGG | 0.454896 | 5.4:+68750598 | MS.gene39846:CDS |
| ATTGTGGACTGGGGATGAAA+TGG | 0.456831 | 5.4:+68750843 | MS.gene39846:CDS |
| TTCATCCATTTCCTTTGCCC+AGG | 0.460758 | 5.4:-68750641 | None:intergenic |
| GCATTTGTATACCTCCCATC+TGG | 0.482181 | 5.4:-68751072 | None:intergenic |
| GCTTCTCTGCTGAATTTACA+AGG | 0.492882 | 5.4:+68749995 | MS.gene39846:CDS |
| TGTCTAAGTTCTTCATACTC+AGG | 0.500266 | 5.4:-68751156 | None:intergenic |
| ATCTTGTTCTTCTAATGGGA+TGG | 0.501794 | 5.4:+68749716 | None:intergenic |
| GGATGAAAGTGATGAAGAAA+AGG | 0.503689 | 5.4:+68750690 | MS.gene39846:CDS |
| AGGAAAAGACATTGTGGACT+GGG | 0.513307 | 5.4:+68750833 | MS.gene39846:CDS |
| GAGTTAAGAAGTGTTTGGTC+CGG | 0.521482 | 5.4:+68750802 | MS.gene39846:CDS |
| TCATTTGGGTAAGCTTCTGT+AGG | 0.526888 | 5.4:-68750883 | None:intergenic |
| AAAAGACAGAATCTAGAAGA+AGG | 0.527188 | 5.4:+68751310 | MS.gene39846:CDS |
| GTGATGAGTTAAGAAGTGTT+TGG | 0.528221 | 5.4:+68750797 | MS.gene39846:CDS |
| GAAGAAGGAAAGCACGGAAG+AGG | 0.528592 | 5.4:+68751325 | MS.gene39846:CDS |
| GGCTTTCAAAAGTTCAGAGA+TGG | 0.532099 | 5.4:-68750965 | None:intergenic |
| GAAGATAACACTCTGTGGAC+AGG | 0.534992 | 5.4:+68750661 | MS.gene39846:CDS |
| CACTATCATCAGCATCAACT+AGG | 0.536547 | 5.4:-68750777 | None:intergenic |
| GAGGAAAAGACATTGTGGAC+TGG | 0.549446 | 5.4:+68750832 | MS.gene39846:CDS |
| GCTTTGAAGAAATTAAAGAA+AGG | 0.568632 | 5.4:+68751048 | MS.gene39846:CDS |
| ATGGGAGGTATACAAATGCA+TGG | 0.568953 | 5.4:+68751076 | MS.gene39846:CDS |
| TTCTGTAGGAACATCGTCAT+CGG | 0.570605 | 5.4:-68750869 | None:intergenic |
| AAATTAAAGAAAGGTCCAGA+TGG | 0.576020 | 5.4:+68751057 | MS.gene39846:CDS |
| AATCTAGAAGAAGGAAAGCA+CGG | 0.588132 | 5.4:+68751319 | MS.gene39846:CDS |
| CACTCTGTGGACAGGAAGTG+AGG | 0.590742 | 5.4:+68750669 | MS.gene39846:CDS |
| AATTAAAGAAAGGTCCAGAT+GGG | 0.596822 | 5.4:+68751058 | MS.gene39846:CDS |
| ATAAAGATATTAGAAAAGCA+AGG | 0.602866 | 5.4:+68750731 | MS.gene39846:CDS |
| AAAAGCAAGGCAACAAGCGA+AGG | 0.612033 | 5.4:+68750744 | MS.gene39846:CDS |
| TGGGAGGTATACAAATGCAT+GGG | 0.630857 | 5.4:+68751077 | MS.gene39846:CDS |
| TAAAGAAAGGTCCAGATGGG+AGG | 0.632894 | 5.4:+68751061 | MS.gene39846:CDS |
| TGTTTGGTCCGGCAGTGACG+AGG | 0.635816 | 5.4:+68750813 | MS.gene39846:CDS |
| TGTGAGAGTAGTAGCCAATG+TGG | 0.646108 | 5.4:-68749790 | None:intergenic |
| TGAGGGTTCCAAAACCACAT+TGG | 0.653043 | 5.4:+68749776 | MS.gene39846:CDS |
| GAAAGCCGAACAAGAACCTG+AGG | 0.659666 | 5.4:+68750981 | MS.gene39846:CDS |
| GTGACGAGGAAAAGACATTG+TGG | 0.674941 | 5.4:+68750827 | MS.gene39846:CDS |
| TGGATGAAGATAACACTCTG+TGG | 0.688188 | 5.4:+68750656 | MS.gene39846:CDS |
| ATTGGCTACTACTCTCACAA+AGG | 0.689760 | 5.4:+68749794 | MS.gene39846:CDS |
| GGAAAAGACATTGTGGACTG+GGG | 0.690266 | 5.4:+68750834 | MS.gene39846:CDS |
| GCATGGAGATCGTATGCTCG+TGG | 0.691194 | 5.4:+68750556 | MS.gene39846:intron |
| TATGAAGAACTTAGACAAGG+AGG | 0.697186 | 5.4:+68751162 | MS.gene39846:CDS |
| CTTTGGAAGAAGAAGACCAG+GGG | 0.713785 | 5.4:+68750600 | MS.gene39846:CDS |
| GAGTATGAAGAACTTAGACA+AGG | 0.729626 | 5.4:+68751159 | MS.gene39846:CDS |
| TCTTTGGAAGAAGAAGACCA+GGG | 0.751367 | 5.4:+68750599 | MS.gene39846:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTCAAACTAAAAAAA+AGG | - | chr5.4:68750024-68750043 | None:intergenic | 10.0% |
| !! | AAAATCATGTTAAATTACAA+CGG | - | chr5.4:68750261-68750280 | None:intergenic | 15.0% |
| !! | ACAATGCAATTAAAATAAAT+AGG | + | chr5.4:68750333-68750352 | MS.gene39846:intron | 15.0% |
| !!! | TCAAAAATATTTTATGATTC+AGG | + | chr5.4:68749944-68749963 | MS.gene39846:CDS | 15.0% |
| !!! | TTTTTATTGTATTGATCTTA+TGG | + | chr5.4:68750410-68750429 | MS.gene39846:intron | 15.0% |
| !! | ATAAAGATATTAGAAAAGCA+AGG | + | chr5.4:68750731-68750750 | MS.gene39846:CDS | 20.0% |
| !! | TCAGTAATGAATATAACAAA+GGG | - | chr5.4:68750094-68750113 | None:intergenic | 20.0% |
| !! | TTCAGTAATGAATATAACAA+AGG | - | chr5.4:68750095-68750114 | None:intergenic | 20.0% |
| !!! | ACTTATCACTTTTTTCATTT+GGG | - | chr5.4:68750900-68750919 | None:intergenic | 20.0% |
| !!! | GCTAAATATTCAGTTTTTTA+AGG | + | chr5.4:68751194-68751213 | MS.gene39846:CDS | 20.0% |
| !!! | GTTGTCTTAAAATTAACTTT+TGG | - | chr5.4:68750454-68750473 | None:intergenic | 20.0% |
| !!! | TACTTATCACTTTTTTCATT+TGG | - | chr5.4:68750901-68750920 | None:intergenic | 20.0% |
| !!! | TTTTTATTATATGTTAGACC+AGG | - | chr5.4:68750144-68750163 | None:intergenic | 20.0% |
| ! | AACTGAATATTTAGCTGTTT+AGG | - | chr5.4:68751189-68751208 | None:intergenic | 25.0% |
| ! | AGTGATCTAGATATTCTAAT+TGG | + | chr5.4:68751108-68751127 | MS.gene39846:CDS | 25.0% |
| ! | CAGTAATGAATATAACAAAG+GGG | - | chr5.4:68750093-68750112 | None:intergenic | 25.0% |
| ! | CTAGAAACAAATTTACTCTT+TGG | - | chr5.4:68751279-68751298 | None:intergenic | 25.0% |
| !!! | GCTTTGAAGAAATTAAAGAA+AGG | + | chr5.4:68751048-68751067 | MS.gene39846:CDS | 25.0% |
| AAAAGACAGAATCTAGAAGA+AGG | + | chr5.4:68751310-68751329 | MS.gene39846:CDS | 30.0% | |
| AAATTAAAGAAAGGTCCAGA+TGG | + | chr5.4:68751057-68751076 | MS.gene39846:CDS | 30.0% | |
| AAGTCAAATCTATTAGCTAG+AGG | - | chr5.4:68750533-68750552 | None:intergenic | 30.0% | |
| AATTAAAGAAAGGTCCAGAT+GGG | + | chr5.4:68751058-68751077 | MS.gene39846:CDS | 30.0% | |
| AGCATTTGAAAACGTTGTTT+CGG | + | chr5.4:68751131-68751150 | MS.gene39846:CDS | 30.0% | |
| ATGAAGACTTCAAAAAAACC+TGG | + | chr5.4:68750623-68750642 | MS.gene39846:CDS | 30.0% | |
| CTCATAACACAGAAAATATG+TGG | - | chr5.4:68750208-68750227 | None:intergenic | 30.0% | |
| CTGAAAGAGAAACAAAAATG+AGG | - | chr5.4:68749923-68749942 | None:intergenic | 30.0% | |
| GTTTGCAGAAGATATGAATT+TGG | - | chr5.4:68750315-68750334 | None:intergenic | 30.0% | |
| TAATGAATATAACAAAGGGG+TGG | - | chr5.4:68750090-68750109 | None:intergenic | 30.0% | |
| TAGCAATGTATATCCTTTAC+TGG | + | chr5.4:68750232-68750251 | MS.gene39846:intron | 30.0% | |
| TCAGGTGAGAATTTGTAATT+TGG | - | chr5.4:68751243-68751262 | None:intergenic | 30.0% | |
| TGAAGACTTCAAAAAAACCT+GGG | + | chr5.4:68750624-68750643 | MS.gene39846:CDS | 30.0% | |
| TTGAAACAAACGCATAAAAC+AGG | - | chr5.4:68750168-68750187 | None:intergenic | 30.0% | |
| ! | CACATATTTTCTGTGTTATG+AGG | + | chr5.4:68750206-68750225 | MS.gene39846:intron | 30.0% |
| ! | TAACATGATTTTCATTAGCG+AGG | + | chr5.4:68750269-68750288 | MS.gene39846:intron | 30.0% |
| !! | CTCATTTTTGTTTCTCTTTC+AGG | + | chr5.4:68749921-68749940 | MS.gene39846:intron | 30.0% |
| !!! | TTTGGTTTCAGTTTTAACTC+AGG | - | chr5.4:68751261-68751280 | None:intergenic | 30.0% |
| !!! | TTTTTTAACGTGACTTGAAC+TGG | + | chr5.4:68750041-68750060 | MS.gene39846:intron | 30.0% |
| AATCACATCACGAAATGGAA+AGG | - | chr5.4:68750365-68750384 | None:intergenic | 35.0% | |
| AATCTAGAAGAAGGAAAGCA+CGG | + | chr5.4:68751319-68751338 | MS.gene39846:CDS | 35.0% | |
| ATTACAACGGAAACCAGTAA+AGG | - | chr5.4:68750248-68750267 | None:intergenic | 35.0% | |
| CAAGACAAAAATGTCCAAAG+AGG | - | chr5.4:68749850-68749869 | None:intergenic | 35.0% | |
| CAGTAAATCACATCACGAAA+TGG | - | chr5.4:68750370-68750389 | None:intergenic | 35.0% | |
| CTTCTTCCAAAGAGATCATA+TGG | - | chr5.4:68750592-68750611 | None:intergenic | 35.0% | |
| GAGTATGAAGAACTTAGACA+AGG | + | chr5.4:68751159-68751178 | MS.gene39846:CDS | 35.0% | |
| GGATGAAAGTGATGAAGAAA+AGG | + | chr5.4:68750690-68750709 | MS.gene39846:CDS | 35.0% | |
| GGCTATTATCAATCATGTCA+TGG | + | chr5.4:68749821-68749840 | MS.gene39846:intron | 35.0% | |
| TACTACTCTCACAAAGGTTA+AGG | + | chr5.4:68749800-68749819 | MS.gene39846:intron | 35.0% | |
| TATGAAGAACTTAGACAAGG+AGG | + | chr5.4:68751162-68751181 | MS.gene39846:CDS | 35.0% | |
| TGTCTAAGTTCTTCATACTC+AGG | - | chr5.4:68751159-68751178 | None:intergenic | 35.0% | |
| TTGTGAGAGAACTAAATTCC+TGG | + | chr5.4:68750123-68750142 | MS.gene39846:intron | 35.0% | |
| ! | GCATTTGAAAACGTTGTTTC+GGG | + | chr5.4:68751132-68751151 | MS.gene39846:CDS | 35.0% |
| !! | AATAGATTTGACTTGCAGCA+TGG | + | chr5.4:68750539-68750558 | MS.gene39846:intron | 35.0% |
| !! | GTGATGAGTTAAGAAGTGTT+TGG | + | chr5.4:68750797-68750816 | MS.gene39846:CDS | 35.0% |
| !! | TCAGAGATGGTTCTGTATTT+TGG | - | chr5.4:68750955-68750974 | None:intergenic | 35.0% |
| AAAAACCTGGGCAAAGGAAA+TGG | + | chr5.4:68750636-68750655 | MS.gene39846:CDS | 40.0% | |
| AGGAAAAGACATTGTGGACT+GGG | + | chr5.4:68750833-68750852 | MS.gene39846:CDS | 40.0% | |
| ATTCTCAACTGCAATCTTCC+TGG | - | chr5.4:68751028-68751047 | None:intergenic | 40.0% | |
| ATTGGCTACTACTCTCACAA+AGG | + | chr5.4:68749794-68749813 | MS.gene39846:CDS | 40.0% | |
| CACTATCATCAGCATCAACT+AGG | - | chr5.4:68750780-68750799 | None:intergenic | 40.0% | |
| CTTCAAAAAAACCTGGGCAA+AGG | + | chr5.4:68750630-68750649 | MS.gene39846:CDS | 40.0% | |
| GATGTGTTATCTAGCACACA+AGG | + | chr5.4:68750506-68750525 | MS.gene39846:intron | 40.0% | |
| GCTTCTCTGCTGAATTTACA+AGG | + | chr5.4:68749995-68750014 | MS.gene39846:CDS | 40.0% | |
| GGCTTTCAAAAGTTCAGAGA+TGG | - | chr5.4:68750968-68750987 | None:intergenic | 40.0% | |
| TCATTTGGGTAAGCTTCTGT+AGG | - | chr5.4:68750886-68750905 | None:intergenic | 40.0% | |
| TGGATGAAGATAACACTCTG+TGG | + | chr5.4:68750656-68750675 | MS.gene39846:CDS | 40.0% | |
| TTCTGTAGGAACATCGTCAT+CGG | - | chr5.4:68750872-68750891 | None:intergenic | 40.0% | |
| ! | AGTAGTAGCCAATGTGGTTT+TGG | - | chr5.4:68749787-68749806 | None:intergenic | 40.0% |
| ! | ATGGGAGGTATACAAATGCA+TGG | + | chr5.4:68751076-68751095 | MS.gene39846:CDS | 40.0% |
| ! | TCTTTGGAAGAAGAAGACCA+GGG | + | chr5.4:68750599-68750618 | MS.gene39846:CDS | 40.0% |
| ! | TGGGAGGTATACAAATGCAT+GGG | + | chr5.4:68751077-68751096 | MS.gene39846:CDS | 40.0% |
| !! | GAGTTAAGAAGTGTTTGGTC+CGG | + | chr5.4:68750802-68750821 | MS.gene39846:CDS | 40.0% |
| !!! | CCTTTTTTCGTCTCTGATGA+GGG | + | chr5.4:68749759-68749778 | MS.gene39846:CDS | 40.0% |
| !!! | TTTTTGAAGTCTTCATCCCC+TGG | - | chr5.4:68750619-68750638 | None:intergenic | 40.0% |
| AAAAGCAAGGCAACAAGCGA+AGG | + | chr5.4:68750744-68750763 | MS.gene39846:CDS | 45.0% | |
| AACGTGACTTGAACTGGTTG+TGG | + | chr5.4:68750047-68750066 | MS.gene39846:intron | 45.0% | |
| AATGAGGCAGTTCATTGTCG+TGG | - | chr5.4:68749907-68749926 | None:intergenic | 45.0% | |
| CCCTCATCAGAGACGAAAAA+AGG | - | chr5.4:68749762-68749781 | None:intergenic | 45.0% | |
| CGCAAGCCATATGATCTCTT+TGG | + | chr5.4:68750583-68750602 | MS.gene39846:CDS | 45.0% | |
| GAAGATAACACTCTGTGGAC+AGG | + | chr5.4:68750661-68750680 | MS.gene39846:CDS | 45.0% | |
| GAGGAAAAGACATTGTGGAC+TGG | + | chr5.4:68750832-68750851 | MS.gene39846:CDS | 45.0% | |
| GCATTTGTATACCTCCCATC+TGG | - | chr5.4:68751075-68751094 | None:intergenic | 45.0% | |
| GTGACGAGGAAAAGACATTG+TGG | + | chr5.4:68750827-68750846 | MS.gene39846:CDS | 45.0% | |
| TAAAGAAAGGTCCAGATGGG+AGG | + | chr5.4:68751061-68751080 | MS.gene39846:CDS | 45.0% | |
| TCATGTCATGGATGCCTCTT+TGG | + | chr5.4:68749833-68749852 | MS.gene39846:intron | 45.0% | |
| TGAGGGTTCCAAAACCACAT+TGG | + | chr5.4:68749776-68749795 | MS.gene39846:CDS | 45.0% | |
| TGTGAGAGTAGTAGCCAATG+TGG | - | chr5.4:68749793-68749812 | None:intergenic | 45.0% | |
| TTCATCCATTTCCTTTGCCC+AGG | - | chr5.4:68750644-68750663 | None:intergenic | 45.0% | |
| ! | CTCTTTGGAAGAAGAAGACC+AGG | + | chr5.4:68750598-68750617 | MS.gene39846:CDS | 45.0% |
| ! | CTTTGGAAGAAGAAGACCAG+GGG | + | chr5.4:68750600-68750619 | MS.gene39846:CDS | 45.0% |
| ! | GGAAAAGACATTGTGGACTG+GGG | + | chr5.4:68750834-68750853 | MS.gene39846:CDS | 45.0% |
| !! | ATTGTGGACTGGGGATGAAA+TGG | + | chr5.4:68750843-68750862 | MS.gene39846:CDS | 45.0% |
| !!! | GCCTTTTTTCGTCTCTGATG+AGG | + | chr5.4:68749758-68749777 | MS.gene39846:CDS | 45.0% |
| CAGCTCCTCAGGTTCTTGTT+CGG | - | chr5.4:68750989-68751008 | None:intergenic | 50.0% | |
| GAAAGCCGAACAAGAACCTG+AGG | + | chr5.4:68750981-68751000 | MS.gene39846:CDS | 50.0% | |
| ! | GAAGAAGGAAAGCACGGAAG+AGG | + | chr5.4:68751325-68751344 | MS.gene39846:CDS | 50.0% |
| ! | TGTCTTTTCCTCGTCACTGC+CGG | - | chr5.4:68750824-68750843 | None:intergenic | 50.0% |
| !! | ATCTTCCTGGCTTGCTTTCC+TGG | - | chr5.4:68751015-68751034 | None:intergenic | 50.0% |
| CACTCTGTGGACAGGAAGTG+AGG | + | chr5.4:68750669-68750688 | MS.gene39846:CDS | 55.0% | |
| GCATGGAGATCGTATGCTCG+TGG | + | chr5.4:68750556-68750575 | MS.gene39846:intron | 55.0% | |
| TGTCGCCAGGAAAGCAAGCC+AGG | + | chr5.4:68751007-68751026 | MS.gene39846:CDS | 60.0% | |
| TGTTTGGTCCGGCAGTGACG+AGG | + | chr5.4:68750813-68750832 | MS.gene39846:CDS | 60.0% | |
| TTTCCTGGCGACAGCTCCTC+AGG | - | chr5.4:68751000-68751019 | None:intergenic | 60.0% | |
| GAACCTGAGGAGCTGTCGCC+AGG | + | chr5.4:68750994-68751013 | MS.gene39846:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 68749730 | 68751350 | 68749730 | ID=MS.gene39846 |
| chr5.4 | mRNA | 68749730 | 68751350 | 68749730 | ID=MS.gene39846.t1;Parent=MS.gene39846 |
| chr5.4 | exon | 68749730 | 68749815 | 68749730 | ID=MS.gene39846.t1.exon1;Parent=MS.gene39846.t1 |
| chr5.4 | CDS | 68749730 | 68749815 | 68749730 | ID=cds.MS.gene39846.t1;Parent=MS.gene39846.t1 |
| chr5.4 | exon | 68749943 | 68750016 | 68749943 | ID=MS.gene39846.t1.exon2;Parent=MS.gene39846.t1 |
| chr5.4 | CDS | 68749943 | 68750016 | 68749943 | ID=cds.MS.gene39846.t1;Parent=MS.gene39846.t1 |
| chr5.4 | exon | 68750557 | 68751350 | 68750557 | ID=MS.gene39846.t1.exon3;Parent=MS.gene39846.t1 |
| chr5.4 | CDS | 68750557 | 68751350 | 68750557 | ID=cds.MS.gene39846.t1;Parent=MS.gene39846.t1 |
| Gene Sequence |
| Protein sequence |
