AlfalfaGEDB | MS.gene39846

M. sativa cultivar XinJiangDaYe / MS.gene39846

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39846.t1	XP_003616946.1	96.9	318	9	1	1	317	1	318	5.30E-161	577

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39846.t1	G7K7M0	96.9	318	9	1	1	317	1	318	3.8e-161	577.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene39846	0.837805	4.18E-57	-1.69E-46
MS.gene049382	MS.gene39846	0.819717	1.00E-52	-1.69E-46
MS.gene050226	MS.gene39846	0.811271	7.61E-51	-1.69E-46
MS.gene050227	MS.gene39846	0.812807	3.52E-51	-1.69E-46
MS.gene050228	MS.gene39846	0.822982	1.77E-53	-1.69E-46
MS.gene050303	MS.gene39846	0.810056	1.39E-50	-1.69E-46
MS.gene050438	MS.gene39846	0.803892	2.81E-49	-1.69E-46
MS.gene050442	MS.gene39846	0.805913	1.06E-49	-1.69E-46
MS.gene050623	MS.gene39846	-0.817477	3.23E-52	-1.69E-46
MS.gene050724	MS.gene39846	0.800265	1.56E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39846.t1	MTR_5g086010	97.170	318	8	1	1	317	1	318	0.0	626
MS.gene39846.t1	MTR_5g087440	94.654	318	16	1	1	317	1	318	0.0	605
MS.gene39846.t1	MTR_5g086010	100.000	231	0	0	87	317	1	231	3.75e-168	466
MS.gene39846.t1	MTR_5g087440	99.134	231	2	0	87	317	1	231	5.56e-167	463

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39846.t1	AT5G17460	67.105	304	88	2	26	317	6	309	1.77e-137	392
MS.gene39846.t1	AT5G17460	67.105	304	88	2	26	317	6	309	1.77e-137	392
MS.gene39846.t1	AT5G17460	67.105	304	88	2	26	317	6	309	1.77e-137	392
MS.gene39846.t1	AT5G17460	67.105	304	88	2	26	317	6	309	1.77e-137	392
MS.gene39846.t1	AT5G17460	75.214	234	55	1	87	317	1	234	3.00e-121	348

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Find 58 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACAGAATCTAGAAGA+AGG	0.527188	5.4:+68751310	MS.gene39846:CDS
AAAAGCAAGGCAACAAGCGA+AGG	0.612033	5.4:+68750744	MS.gene39846:CDS
AAATTAAAGAAAGGTCCAGA+TGG	0.576020	5.4:+68751057	MS.gene39846:CDS
AACTGAATATTTAGCTGTTT+AGG	0.304869	5.4:-68751186	None:intergenic
AATCTAGAAGAAGGAAAGCA+CGG	0.588132	5.4:+68751319	MS.gene39846:CDS
AATTAAAGAAAGGTCCAGAT+GGG	0.596822	5.4:+68751058	MS.gene39846:CDS
AGCATTTGAAAACGTTGTTT+CGG	0.382284	5.4:+68751131	MS.gene39846:CDS
AGGAAAAGACATTGTGGACT+GGG	0.513307	5.4:+68750833	MS.gene39846:CDS
AGTAGTAGCCAATGTGGTTT+TGG	0.306418	5.4:-68749784	None:intergenic
AGTGATCTAGATATTCTAAT+TGG	0.302629	5.4:+68751108	MS.gene39846:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGACAGAATCTAGAAGA+AGG	+	chr5.4:68751310-68751329	MS.gene39846:CDS	30.0%
AAATTAAAGAAAGGTCCAGA+TGG	+	chr5.4:68751057-68751076	MS.gene39846:CDS	30.0%
AAGTCAAATCTATTAGCTAG+AGG	-	chr5.4:68750533-68750552	None:intergenic	30.0%
AATTAAAGAAAGGTCCAGAT+GGG	+	chr5.4:68751058-68751077	MS.gene39846:CDS	30.0%
AGCATTTGAAAACGTTGTTT+CGG	+	chr5.4:68751131-68751150	MS.gene39846:CDS	30.0%
ATGAAGACTTCAAAAAAACC+TGG	+	chr5.4:68750623-68750642	MS.gene39846:CDS	30.0%
CTCATAACACAGAAAATATG+TGG	-	chr5.4:68750208-68750227	None:intergenic	30.0%
CTGAAAGAGAAACAAAAATG+AGG	-	chr5.4:68749923-68749942	None:intergenic	30.0%
GTTTGCAGAAGATATGAATT+TGG	-	chr5.4:68750315-68750334	None:intergenic	30.0%
TAATGAATATAACAAAGGGG+TGG	-	chr5.4:68750090-68750109	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	68749730	68751350	68749730	ID=MS.gene39846
chr5.4	mRNA	68749730	68751350	68749730	ID=MS.gene39846.t1;Parent=MS.gene39846
chr5.4	exon	68749730	68749815	68749730	ID=MS.gene39846.t1.exon1;Parent=MS.gene39846.t1
chr5.4	CDS	68749730	68749815	68749730	ID=cds.MS.gene39846.t1;Parent=MS.gene39846.t1
chr5.4	exon	68749943	68750016	68749943	ID=MS.gene39846.t1.exon2;Parent=MS.gene39846.t1
chr5.4	CDS	68749943	68750016	68749943	ID=cds.MS.gene39846.t1;Parent=MS.gene39846.t1
chr5.4	exon	68750557	68751350	68750557	ID=MS.gene39846.t1.exon3;Parent=MS.gene39846.t1
chr5.4	CDS	68750557	68751350	68750557	ID=cds.MS.gene39846.t1;Parent=MS.gene39846.t1

Gene Sequence

>MS.gene39846

ATGGGATGGAGATCATTCTCTTACAATAGCCTTTTTTCGTCTCTGATGAGGGTTCCAAAACCACATTGGCTACTACTCTCACAAAGGTTAAGGCTATTATCAATCATGTCATGGATGCCTCTTTGGACATTTTTGTCTTGTTGAAATGTTGATTTTAGACTTTTAGATCATTTTCCACGACAATGAACTGCCTCATTTTTGTTTCTCTTTCAGGTCAAAAATATTTTATGATTCAGGTCGAGTTGAACTGCAAAATTGTTATAGTGCTTCTCTGCTGAATTTACAAGGTTACCTTTTTTTTAGTTTGAATTTTTTTTAACGTGACTTGAACTGGTTGTGGTAGTGTACTTAATAAAACCACCCCTTTGTTATATTCATTACTGAAGTCTGAATTTGTGAGAGAACTAAATTCCTGGTCTAACATATAATAAAAAGCCTGTTTTATGCGTTTGTTTCAAAACTCTTTCAAATGCATCCACATATTTTCTGTGTTATGAGGATTTAGCAATGTATATCCTTTACTGGTTTCCGTTGTAATTTAACATGATTTTCATTAGCGAGGATTTTGTAGAGAATCATGAACCAAATTCATATCTTCTGCAAACAATGCAATTAAAATAAATAGGAGCATTCCTTTCCATTTCGTGATGTGATTTACTGACACAGTTCAAAATCTTAATTTTTTATTGTATTGATCTTATGGCAATTGATTTTATTAAAGCCAAAAGTTAATTTTAAGACAACAAGCTTCTTTTGTAATCTTCATACATACAATTGATGTGTTATCTAGCACACAAGGTCCTCTAGCTAATAGATTTGACTTGCAGCATGGAGATCGTATGCTCGTGGTGCGCGCAAGCCATATGATCTCTTTGGAAGAAGAAGACCAGGGGATGAAGACTTCAAAAAAACCTGGGCAAAGGAAATGGATGAAGATAACACTCTGTGGACAGGAAGTGAGGATGAAAGTGATGAAGAAAAGGATTCAAAGAGTCGTCTTCATAAAGATATTAGAAAAGCAAGGCAACAAGCGAAGGAACATGCTGACCTAGTTGATGCTGATGATAGTGATGAGTTAAGAAGTGTTTGGTCCGGCAGTGACGAGGAAAAGACATTGTGGACTGGGGATGAAATGGACACCGATGACGATGTTCCTACAGAAGCTTACCCAAATGAAAAAAGTGATAAGTACATAGATAAGATTTTCGAGTTTGATGAAATGCCAAAATACAGAACCATCTCTGAACTTTTGAAAGCCGAACAAGAACCTGAGGAGCTGTCGCCAGGAAAGCAAGCCAGGAAGATTGCAGTTGAGAATGCTTTGAAGAAATTAAAGAAAGGTCCAGATGGGAGGTATACAAATGCATGGGAAGTTATGAGTGATCTAGATATTCTAATTGGAGCATTTGAAAACGTTGTTTCGGGACCTGAGTATGAAGAACTTAGACAAGGAGGTCCTAAACAGCTAAATATTCAGTTTTTTAAGGACATTCAAGCGCGAATGAGAGATCCAAATTACAAATTCTCACCTGAGTTAAAACTGAAACCAAAGAGTAAATTTGTTTCTAGAAAGAAATTTCAAAAGACAGAATCTAGAAGAAGGAAAGCACGGAAGAGGTAA

Protein sequence

>MS.gene39846.t1

MGWRSFSYNSLFSSLMRVPKPHWLLLSQRSKIFYDSGRVELQNCYSASLLNLQAWRSYARGARKPYDLFGRRRPGDEDFKKTWAKEMDEDNTLWTGSEDESDEEKDSKSRLHKDIRKARQQAKEHADLVDADDSDELRSVWSGSDEEKTLWTGDEMDTDDDVPTEAYPNEKSDKYIDKIFEFDEMPKYRTISELLKAEQEPEELSPGKQARKIAVENALKKLKKGPDGRYTNAWEVMSDLDILIGAFENVVSGPEYEELRQGGPKQLNIQFFKDIQARMRDPNYKFSPELKLKPKSKFVSRKKFQKTESRRRKARKR