Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41796.t1 | AES80930.2 | 97.7 | 929 | 18 | 1 | 1 | 929 | 1 | 926 | 0.00E+00 | 1758.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41796.t1 | Q8GZQ3 | 67.9 | 936 | 276 | 6 | 1 | 929 | 1 | 919 | 0.0e+00 | 1192.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41796.t1 | G7L1J6 | 97.7 | 929 | 18 | 1 | 1 | 929 | 1 | 926 | 0.0e+00 | 1758.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene41796 | 0.842145 | 3.09E-58 | -1.69E-46 |
| MS.gene049491 | MS.gene41796 | 0.829052 | 6.38E-55 | -1.69E-46 |
| MS.gene049614 | MS.gene41796 | 0.816329 | 5.85E-52 | -1.69E-46 |
| MS.gene049661 | MS.gene41796 | 0.805926 | 1.05E-49 | -1.69E-46 |
| MS.gene049662 | MS.gene41796 | 0.802944 | 4.41E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene41796 | 0.805283 | 1.44E-49 | -1.69E-46 |
| MS.gene050076 | MS.gene41796 | 0.804399 | 2.20E-49 | -1.69E-46 |
| MS.gene050099 | MS.gene41796 | 0.819485 | 1.13E-52 | -1.69E-46 |
| MS.gene050231 | MS.gene41796 | 0.828618 | 8.13E-55 | -1.69E-46 |
| MS.gene050301 | MS.gene41796 | 0.877222 | 7.47E-69 | -1.69E-46 |
| MS.gene050767 | MS.gene41796 | 0.814269 | 1.68E-51 | -1.69E-46 |
| MS.gene050770 | MS.gene41796 | 0.815544 | 8.76E-52 | -1.69E-46 |
| MS.gene050812 | MS.gene41796 | 0.826865 | 2.15E-54 | -1.69E-46 |
| MS.gene05101 | MS.gene41796 | 0.835384 | 1.73E-56 | -1.69E-46 |
| MS.gene051471 | MS.gene41796 | 0.86202 | 6.81E-64 | -1.69E-46 |
| MS.gene051663 | MS.gene41796 | 0.827475 | 1.53E-54 | -1.69E-46 |
| MS.gene052078 | MS.gene41796 | 0.828258 | 9.94E-55 | -1.69E-46 |
| MS.gene052178 | MS.gene41796 | 0.809784 | 1.59E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene41796 | 0.835378 | 1.74E-56 | -1.69E-46 |
| MS.gene052207 | MS.gene41796 | 0.815355 | 9.64E-52 | -1.69E-46 |
| MS.gene052253 | MS.gene41796 | 0.803524 | 3.35E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene41796 | 0.827628 | 1.41E-54 | -1.69E-46 |
| MS.gene052326 | MS.gene41796 | 0.856271 | 3.60E-62 | -1.69E-46 |
| MS.gene052485 | MS.gene41796 | 0.809756 | 1.62E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene41796 | 0.802657 | 5.06E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene41796 | 0.840591 | 7.93E-58 | -1.69E-46 |
| MS.gene054011 | MS.gene41796 | 0.802734 | 4.88E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene41796 | 0.848739 | 5.06E-60 | -1.69E-46 |
| MS.gene054376 | MS.gene41796 | 0.801117 | 1.05E-48 | -1.69E-46 |
| MS.gene05455 | MS.gene41796 | 0.836106 | 1.14E-56 | -1.69E-46 |
| MS.gene054802 | MS.gene41796 | 0.826878 | 2.13E-54 | -1.69E-46 |
| MS.gene054803 | MS.gene41796 | 0.828135 | 1.06E-54 | -1.69E-46 |
| MS.gene054804 | MS.gene41796 | 0.82669 | 2.36E-54 | -1.69E-46 |
| MS.gene055277 | MS.gene41796 | 0.855458 | 6.22E-62 | -1.69E-46 |
| MS.gene055390 | MS.gene41796 | 0.875389 | 3.20E-68 | -1.69E-46 |
| MS.gene055412 | MS.gene41796 | 0.812838 | 3.47E-51 | -1.69E-46 |
| MS.gene055422 | MS.gene41796 | 0.86458 | 1.10E-64 | -1.69E-46 |
| MS.gene055428 | MS.gene41796 | 0.837878 | 4.01E-57 | -1.69E-46 |
| MS.gene055604 | MS.gene41796 | 0.805808 | 1.12E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene41796 | 0.81505 | 1.13E-51 | -1.69E-46 |
| MS.gene056452 | MS.gene41796 | 0.806883 | 6.63E-50 | -1.69E-46 |
| MS.gene056612 | MS.gene41796 | 0.809699 | 1.66E-50 | -1.69E-46 |
| MS.gene05702 | MS.gene41796 | 0.805617 | 1.22E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene41796 | 0.822799 | 1.95E-53 | -1.69E-46 |
| MS.gene057123 | MS.gene41796 | 0.804873 | 1.75E-49 | -1.69E-46 |
| MS.gene057245 | MS.gene41796 | 0.81856 | 1.84E-52 | -1.69E-46 |
| MS.gene05733 | MS.gene41796 | 0.801015 | 1.10E-48 | -1.69E-46 |
| MS.gene058002 | MS.gene41796 | 0.857252 | 1.85E-62 | -1.69E-46 |
| MS.gene05811 | MS.gene41796 | 0.850501 | 1.63E-60 | -1.69E-46 |
| MS.gene058293 | MS.gene41796 | 0.842013 | 3.35E-58 | -1.69E-46 |
| MS.gene058660 | MS.gene41796 | 0.882348 | 1.12E-70 | -1.69E-46 |
| MS.gene05907 | MS.gene41796 | 0.828014 | 1.14E-54 | -1.69E-46 |
| MS.gene059342 | MS.gene41796 | 0.813361 | 2.66E-51 | -1.69E-46 |
| MS.gene059518 | MS.gene41796 | 0.82597 | 3.51E-54 | -1.69E-46 |
| MS.gene059597 | MS.gene41796 | 0.860055 | 2.70E-63 | -1.69E-46 |
| MS.gene059676 | MS.gene41796 | 0.80673 | 7.14E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene41796 | 0.831597 | 1.52E-55 | -1.69E-46 |
| MS.gene059692 | MS.gene41796 | 0.826775 | 2.25E-54 | -1.69E-46 |
| MS.gene059695 | MS.gene41796 | 0.82775 | 1.32E-54 | -1.69E-46 |
| MS.gene059708 | MS.gene41796 | 0.821597 | 3.71E-53 | -1.69E-46 |
| MS.gene05984 | MS.gene41796 | 0.816833 | 4.51E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene41796 | 0.816447 | 5.50E-52 | -1.69E-46 |
| MS.gene059960 | MS.gene41796 | 0.815931 | 7.18E-52 | -1.69E-46 |
| MS.gene06037 | MS.gene41796 | 0.823037 | 1.72E-53 | -1.69E-46 |
| MS.gene06090 | MS.gene41796 | 0.834482 | 2.92E-56 | -1.69E-46 |
| MS.gene061049 | MS.gene41796 | 0.829275 | 5.64E-55 | -1.69E-46 |
| MS.gene061200 | MS.gene41796 | 0.816244 | 6.11E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41796.t1 | MTR_7g086640 | 97.740 | 929 | 18 | 1 | 1 | 929 | 1 | 926 | 0.0 | 1845 |
| MS.gene41796.t1 | MTR_6g005460 | 34.893 | 748 | 424 | 13 | 92 | 832 | 50 | 741 | 5.19e-124 | 400 |
| MS.gene41796.t1 | MTR_7g116920 | 25.714 | 245 | 163 | 6 | 443 | 685 | 8 | 235 | 2.77e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41796.t1 | AT3G03710 | 68.590 | 936 | 270 | 7 | 1 | 929 | 1 | 919 | 0.0 | 1223 |
| MS.gene41796.t1 | AT5G14580 | 36.974 | 760 | 417 | 13 | 92 | 846 | 59 | 761 | 7.44e-138 | 437 |
| MS.gene41796.t1 | AT2G47220 | 79.545 | 88 | 17 | 1 | 87 | 173 | 21 | 108 | 7.16e-39 | 151 |
Find 237 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTGGAGATATGGACTTTA+AGG | 0.129280 | 7.4:+21079302 | MS.gene41796:CDS |
| TCAGTTGAATTTGAATTATC+TGG | 0.191747 | 7.4:-21088556 | None:intergenic |
| TGATTCGTCGTCGGAGGTTT+TGG | 0.192338 | 7.4:+21067491 | MS.gene41796:CDS |
| GTTCTTGATACCAAGGAATT+TGG | 0.197589 | 7.4:+21079228 | MS.gene41796:CDS |
| GATGAAAGGGCTTTCCTTCT+TGG | 0.200877 | 7.4:-21074181 | None:intergenic |
| AAGCCACAGCTTGAGTTAAT+TGG | 0.228853 | 7.4:-21076736 | None:intergenic |
| GATAAAATAAATCTTATAAT+TGG | 0.231659 | 7.4:+21084887 | MS.gene41796:CDS |
| TGCATTTCAGATGGACATTA+AGG | 0.254453 | 7.4:+21081664 | MS.gene41796:CDS |
| CAACAAAGATGAAAGTAATT+TGG | 0.258431 | 7.4:+21088798 | MS.gene41796:CDS |
| GCTTTAAGTAGCTTCTCTTC+TGG | 0.262614 | 7.4:-21072462 | None:intergenic |
| CGTTCTAGCTTCCCCGCGTT+TGG | 0.271590 | 7.4:+21067402 | MS.gene41796:CDS |
| CCTTTCCTCCTTCATGTGTT+GGG | 0.279184 | 7.4:+21078748 | MS.gene41796:CDS |
| TTGACAATGGTTCCAACTAT+TGG | 0.318776 | 7.4:+21085142 | MS.gene41796:CDS |
| GAAAATATTTGCGAGAGATT+TGG | 0.321372 | 7.4:+21085084 | MS.gene41796:CDS |
| CTTATTCTGTCCGACATAAC+TGG | 0.336072 | 7.4:+21079267 | MS.gene41796:CDS |
| TCCTTTCCTCCTTCATGTGT+TGG | 0.342577 | 7.4:+21078747 | MS.gene41796:CDS |
| TTCAACTGATAAGGGTTCAT+TGG | 0.344987 | 7.4:+21088570 | MS.gene41796:CDS |
| CTTTAAGTAGCTTCTCTTCT+GGG | 0.345776 | 7.4:-21072461 | None:intergenic |
| TTAATTGGACGAATTTCATT+TGG | 0.346612 | 7.4:-21076721 | None:intergenic |
| TAATTGGACGAATTTCATTT+GGG | 0.348167 | 7.4:-21076720 | None:intergenic |
| AAGACAATATTTGAGTTTCA+TGG | 0.351241 | 7.4:-21070549 | None:intergenic |
| CTTAAGATTCTTTCAGAGAA+TGG | 0.359095 | 7.4:+21074220 | MS.gene41796:CDS |
| CACATTAGTGAACTGAGTTC+AGG | 0.362235 | 7.4:+21087404 | MS.gene41796:CDS |
| GCTTGCCTCCTCCAGCAAAA+AGG | 0.363438 | 7.4:+21084699 | MS.gene41796:CDS |
| AAGGCAAAACCTCATCAAAA+AGG | 0.369110 | 7.4:+21088668 | MS.gene41796:CDS |
| CCTATCAAGTCCTCGATTGC+TGG | 0.374212 | 7.4:+21079189 | MS.gene41796:CDS |
| TAATTCAAATTCAACTGATA+AGG | 0.379211 | 7.4:+21088561 | MS.gene41796:CDS |
| TTTGGTTGAGACTGGTCATA+TGG | 0.379849 | 7.4:+21068904 | MS.gene41796:CDS |
| CATGTGTTGGGGAGGTTGGC+CGG | 0.379966 | 7.4:+21078760 | MS.gene41796:CDS |
| ATAAATCTTATAATTGGTTC+CGG | 0.382883 | 7.4:+21084893 | MS.gene41796:CDS |
| GTTCTAGCTTCCCCGCGTTT+GGG | 0.383062 | 7.4:+21067403 | MS.gene41796:CDS |
| GTTGGGGAGGTTGGCCGGAT+TGG | 0.387798 | 7.4:+21078765 | MS.gene41796:CDS |
| CGCGTTGGTTTCCGTGGGGT+TGG | 0.393171 | 7.4:-21074370 | None:intergenic |
| TGCTTAGCATTGCAAGATGC+TGG | 0.393547 | 7.4:+21079162 | MS.gene41796:CDS |
| CAACTATTGGTGATATATAT+AGG | 0.393918 | 7.4:+21085155 | MS.gene41796:CDS |
| TGCTGGAATTGCAATGGGTT+TGG | 0.395232 | 7.4:+21079206 | MS.gene41796:CDS |
| GGCTAGTTTAGAGATGTCTA+AGG | 0.396612 | 7.4:+21085105 | MS.gene41796:CDS |
| AATTCAAATTCAACTGATAA+GGG | 0.400775 | 7.4:+21088562 | MS.gene41796:CDS |
| GCACCGAGTAGAAGAGAAAT+TGG | 0.401167 | 7.4:+21078789 | MS.gene41796:CDS |
| TGCAGTGACAGCCAAGGAAT+CGG | 0.404139 | 7.4:-21071353 | None:intergenic |
| TGAAGATGCATCTGGAGATA+TGG | 0.404354 | 7.4:+21079293 | MS.gene41796:CDS |
| TGTGTACACCACTGTTTGTT+TGG | 0.407615 | 7.4:+21070072 | MS.gene41796:CDS |
| TTAAGATTCTTTCAGAGAAT+GGG | 0.408506 | 7.4:+21074221 | MS.gene41796:CDS |
| ATCTTGTCTTTGTTCGTGAC+AGG | 0.410660 | 7.4:-21088763 | None:intergenic |
| GGAGTTCGAGTTGGCCTTGT+TGG | 0.411869 | 7.4:+21071705 | MS.gene41796:CDS |
| GCTATTGATACTGAAGATAA+TGG | 0.413604 | 7.4:+21084959 | MS.gene41796:CDS |
| ACAACGAATAGACAATCTTA+TGG | 0.414678 | 7.4:+21077705 | MS.gene41796:CDS |
| TTATTTGTAGATTGATTGAC+AGG | 0.419891 | 7.4:+21070494 | MS.gene41796:CDS |
| AATGATATAATGCAGGTTGC+TGG | 0.420549 | 7.4:+21081623 | MS.gene41796:intron |
| CCTTTCATCATTAGAAGAAA+AGG | 0.423256 | 7.4:+21074195 | MS.gene41796:CDS |
| CCTTCATGTGTTGGGGAGGT+TGG | 0.427300 | 7.4:+21078756 | MS.gene41796:CDS |
| CAACTAAACCAGCATTTGTC+AGG | 0.429599 | 7.4:-21088606 | None:intergenic |
| GCTTAGCATTGCAAGATGCT+GGG | 0.430496 | 7.4:+21079163 | MS.gene41796:CDS |
| TCCTTGGCTGTCACTGCAGC+TGG | 0.430502 | 7.4:+21071358 | MS.gene41796:CDS |
| GAATTATCTGGATCTGCATC+AGG | 0.433159 | 7.4:-21088544 | None:intergenic |
| GAAGATGAGAGGCTTGGACT+TGG | 0.433258 | 7.4:-21067373 | None:intergenic |
| TTCTGAGGTAGATGTGAAGT+TGG | 0.433258 | 7.4:+21076422 | MS.gene41796:CDS |
| GCAGTGACAGCCAAGGAATC+GGG | 0.436723 | 7.4:-21071352 | None:intergenic |
| ATCTCTACAAACGCTCCATA+TGG | 0.437468 | 7.4:-21087089 | None:intergenic |
| ATGAAACTCAAATATTGTCT+TGG | 0.437637 | 7.4:+21070551 | MS.gene41796:CDS |
| CTCTTGATAATTCACAGAAA+GGG | 0.438673 | 7.4:-21070128 | None:intergenic |
| TCGCTAGCTGTTGCTACGCT+TGG | 0.440720 | 7.4:+21077667 | MS.gene41796:CDS |
| AAACGCGGGGAAGCTAGAAC+GGG | 0.444716 | 7.4:-21067400 | None:intergenic |
| CGGGAATCTTGACGGAATGC+GGG | 0.444785 | 7.4:-21067545 | None:intergenic |
| CTCAGGAGGAGGCAACTTGA+TGG | 0.445249 | 7.4:-21073163 | None:intergenic |
| TCGATTGCTGGAATTGCAAT+GGG | 0.446632 | 7.4:+21079201 | MS.gene41796:CDS |
| CTTTCCTCCTTCATGTGTTG+GGG | 0.447822 | 7.4:+21078749 | MS.gene41796:CDS |
| GAAAGTATGTACCTCTCGTC+CGG | 0.449264 | 7.4:-21087117 | None:intergenic |
| CCAGCAATCGAGGACTTGAT+AGG | 0.451046 | 7.4:-21079189 | None:intergenic |
| ATCAAATCAATAGTTCCATA+TGG | 0.452775 | 7.4:+21087074 | MS.gene41796:CDS |
| CCCACGTCAAAAGCAGTTGC+TGG | 0.453846 | 7.4:+21071684 | MS.gene41796:CDS |
| AAGAGCATTATTGAGCAATC+TGG | 0.454272 | 7.4:+21084929 | MS.gene41796:CDS |
| GTGAATCAGAGGAGCATACT+TGG | 0.457219 | 7.4:-21084726 | None:intergenic |
| ATGGTTTCAGCATTATTCCT+TGG | 0.458148 | 7.4:-21074265 | None:intergenic |
| CAGAAGGCAAAATTGTTTCA+AGG | 0.461946 | 7.4:-21078836 | None:intergenic |
| TGAAACTCAAATATTGTCTT+GGG | 0.462092 | 7.4:+21070552 | MS.gene41796:CDS |
| TCCATCTCCACCAAATTCCT+TGG | 0.464849 | 7.4:-21079238 | None:intergenic |
| GTCACCAACGGGAATCTTGA+CGG | 0.466681 | 7.4:-21067553 | None:intergenic |
| GATGAAGAAGTAATTGTTGA+TGG | 0.466927 | 7.4:+21074316 | MS.gene41796:CDS |
| TAAAGCTGTAGAAGTTGGTC+AGG | 0.468201 | 7.4:+21072479 | MS.gene41796:CDS |
| GAACCTGCGACAATTCTTCC+CGG | 0.470832 | 7.4:-21067451 | None:intergenic |
| ACCAAGGAATTTGGTGGAGA+TGG | 0.472242 | 7.4:+21079237 | MS.gene41796:CDS |
| AGAGCACTTCCATGTGCTCT+AGG | 0.473089 | 7.4:-21076763 | None:intergenic |
| CTGTAATGAGGTAGAAGCCT+TGG | 0.473385 | 7.4:+21073107 | MS.gene41796:CDS |
| GAGTTGGACCTCATGCTGGC+TGG | 0.474204 | 7.4:+21071774 | MS.gene41796:CDS |
| AAGTGGTTCTGTTACAGTTA+CGG | 0.474887 | 7.4:+21068937 | MS.gene41796:CDS |
| ACAGGTGGGTGGAATTACTT+TGG | 0.475051 | 7.4:+21082414 | MS.gene41796:intron |
| ACTGGATCTGAAGATGCATC+TGG | 0.477890 | 7.4:+21079285 | MS.gene41796:CDS |
| ATTGCATATCCCCGATTCCT+TGG | 0.479146 | 7.4:+21071342 | MS.gene41796:CDS |
| CTTACATGTCGGTCACCAAC+GGG | 0.482729 | 7.4:-21067564 | None:intergenic |
| CTCGATTGCTGGAATTGCAA+TGG | 0.484276 | 7.4:+21079200 | MS.gene41796:CDS |
| CATGAGAGAAGCACTGCTGC+AGG | 0.484803 | 7.4:+21082441 | MS.gene41796:CDS |
| TCCTCCTTCATGTGTTGGGG+AGG | 0.485283 | 7.4:+21078752 | MS.gene41796:CDS |
| CGCAGAGATTCTTGAGGACG+AGG | 0.487704 | 7.4:+21074288 | MS.gene41796:CDS |
| TCTGCGTCCTACTATGCCTA+AGG | 0.488115 | 7.4:+21070519 | MS.gene41796:CDS |
| GTTATCAGCCTGACAAATGC+TGG | 0.493637 | 7.4:+21088598 | MS.gene41796:CDS |
| ACTAAACGCGTTGGTTTCCG+TGG | 0.493937 | 7.4:-21074376 | None:intergenic |
| AAATCCTACTTCTGAGGAGA+TGG | 0.495458 | 7.4:+21071743 | MS.gene41796:CDS |
| GTTTCATGGTAGAAGCCCTT+AGG | 0.496080 | 7.4:-21070535 | None:intergenic |
| CTCTGAGTTGGACCTCATGC+TGG | 0.496592 | 7.4:+21071770 | MS.gene41796:CDS |
| CTCTCAACACGAATAGTGTA+GGG | 0.498836 | 7.4:-21078870 | None:intergenic |
| GCATGTGACAGGGTGGGAAA+AGG | 0.500077 | 7.4:+21076683 | MS.gene41796:intron |
| CTACTTAAAGCTGTAGAAGT+TGG | 0.502196 | 7.4:+21072474 | MS.gene41796:CDS |
| TTTCTGCCGCTGGTCGCACT+AGG | 0.502692 | 7.4:+21070155 | MS.gene41796:CDS |
| TAGAAGCCCTTAGGCATAGT+AGG | 0.503563 | 7.4:-21070526 | None:intergenic |
| TTACAAGAGGTTCTATCTGC+AGG | 0.503936 | 7.4:+21077738 | MS.gene41796:CDS |
| TATTGAGCAATCTGGAATAG+AGG | 0.507204 | 7.4:+21084937 | MS.gene41796:CDS |
| TCAACATGTTTATAAAGCTC+AGG | 0.508267 | 7.4:-21073180 | None:intergenic |
| TATTGATGTAAAACTTATAG+AGG | 0.511846 | 7.4:+21087561 | MS.gene41796:CDS |
| CAAACGCGGGGAAGCTAGAA+CGG | 0.513194 | 7.4:-21067401 | None:intergenic |
| CTTGATACCAAGGAATTTGG+TGG | 0.514317 | 7.4:+21079231 | MS.gene41796:CDS |
| TCCTCTGATTCACGTTATGA+AGG | 0.515651 | 7.4:+21084736 | MS.gene41796:CDS |
| TTCTACTCGGTGCACCAATC+CGG | 0.516529 | 7.4:-21078779 | None:intergenic |
| ACGGGAATCTTGACGGAATG+CGG | 0.516800 | 7.4:-21067546 | None:intergenic |
| CACAGCATGGCATCTGTTTG+TGG | 0.518135 | 7.4:+21079135 | MS.gene41796:intron |
| TTCAATTGATTCGTCGTCGG+AGG | 0.520681 | 7.4:+21067485 | MS.gene41796:CDS |
| GGGCCATGGAAGGTGGTGCT+AGG | 0.521871 | 7.4:-21067306 | None:intergenic |
| GCTCTTGATAATTCACAGAA+AGG | 0.523392 | 7.4:-21070129 | None:intergenic |
| GGAGATGGAAAACTCTGAGT+TGG | 0.523459 | 7.4:+21071758 | MS.gene41796:CDS |
| GGACCTCATGCTGGCTGGCA+CGG | 0.523923 | 7.4:+21071779 | MS.gene41796:CDS |
| CTATATATATCACCAATAGT+TGG | 0.524102 | 7.4:-21085154 | None:intergenic |
| CGGGGAAGCTAGAACGGGGA+GGG | 0.524959 | 7.4:-21067395 | None:intergenic |
| ATCTTATAATTGGTTCCGGC+GGG | 0.525663 | 7.4:+21084897 | MS.gene41796:CDS |
| GGGAGGGAAGATGAGAGGCT+TGG | 0.526762 | 7.4:-21067379 | None:intergenic |
| TTAAATAATTTAGGTCAGAC+CGG | 0.528847 | 7.4:+21084865 | MS.gene41796:intron |
| CCAACCTCCCCAACACATGA+AGG | 0.529022 | 7.4:-21078756 | None:intergenic |
| GTTAATATGCAGGAAATCGC+TGG | 0.529795 | 7.4:+21074118 | MS.gene41796:intron |
| CAGCAGTGCTTCTCTCATGA+TGG | 0.533331 | 7.4:-21082437 | None:intergenic |
| TGTCCTAGCACCACCTTCCA+TGG | 0.534864 | 7.4:+21067303 | MS.gene41796:CDS |
| AGAAGGCAAAATTGTTTCAA+GGG | 0.536176 | 7.4:-21078835 | None:intergenic |
| GCTAAGGTTAACACCCGTAA+AGG | 0.537259 | 7.4:+21088649 | MS.gene41796:CDS |
| CAGAAAGCAATGGCTCTTCG+AGG | 0.538615 | 7.4:+21078901 | MS.gene41796:CDS |
| TTTGAGGAAACGTATAGTAG+AGG | 0.539179 | 7.4:+21076470 | MS.gene41796:CDS |
| GAAGCCTTGGTTAAGAAATG+TGG | 0.539219 | 7.4:+21073120 | MS.gene41796:CDS |
| CTAAACGCGTTGGTTTCCGT+GGG | 0.541130 | 7.4:-21074375 | None:intergenic |
| GGTGGAATGTGGTAGGGCCA+TGG | 0.541251 | 7.4:-21067320 | None:intergenic |
| AAGTAATTTGGTTAGTGAAG+AGG | 0.543622 | 7.4:+21088810 | MS.gene41796:CDS |
| TTGGTTGAGACTGGTCATAT+GGG | 0.547677 | 7.4:+21068905 | MS.gene41796:CDS |
| AGCTTTAATTTCCCAAACGC+GGG | 0.549424 | 7.4:-21067414 | None:intergenic |
| TGTGGTAGGGCCATGGAAGG+TGG | 0.553808 | 7.4:-21067313 | None:intergenic |
| TCGAAGGTTGAGAATGGCGG+TGG | 0.555160 | 7.4:-21067338 | None:intergenic |
| TGAGCTTTATAAACATGTTG+AGG | 0.555254 | 7.4:+21073182 | MS.gene41796:CDS |
| CTTAGCATTGCAAGATGCTG+GGG | 0.556255 | 7.4:+21079164 | MS.gene41796:CDS |
| TAGTGCAATATTGATGATAG+AGG | 0.557497 | 7.4:+21071803 | MS.gene41796:CDS |
| CAGGGTGGGAAAAGGAGCGA+TGG | 0.562775 | 7.4:+21076691 | MS.gene41796:intron |
| GAATGGCGGTGGAATGTGGT+AGG | 0.564324 | 7.4:-21067327 | None:intergenic |
| AAAGTATGTACCTCTCGTCC+GGG | 0.569311 | 7.4:-21087116 | None:intergenic |
| TGGTATAACTGCATTTCAGA+TGG | 0.569361 | 7.4:+21081655 | MS.gene41796:CDS |
| ACTCTCAACACGAATAGTGT+AGG | 0.569802 | 7.4:-21078871 | None:intergenic |
| GGGTTTGGTTCTTGATACCA+AGG | 0.569830 | 7.4:+21079221 | MS.gene41796:CDS |
| TGACCAATTTCTCTTCTACT+CGG | 0.571061 | 7.4:-21078792 | None:intergenic |
| AATCTTATAATTGGTTCCGG+CGG | 0.571340 | 7.4:+21084896 | MS.gene41796:CDS |
| CCCAACACATGAAGGAGGAA+AGG | 0.573958 | 7.4:-21078748 | None:intergenic |
| GTTGATGGTGAAGTTGATGA+AGG | 0.574671 | 7.4:+21074331 | MS.gene41796:CDS |
| GCAGTTGCTGGAGTTCGAGT+TGG | 0.574945 | 7.4:+21071696 | MS.gene41796:CDS |
| TTGAGAATGGCGGTGGAATG+TGG | 0.577565 | 7.4:-21067331 | None:intergenic |
| AGGGTGGGAAAAGGAGCGAT+GGG | 0.577844 | 7.4:+21076692 | MS.gene41796:intron |
| GTTCGTGACAGGCTTATCCT+CGG | 0.578484 | 7.4:-21088752 | None:intergenic |
| AGCTTCAATTGATTCGTCGT+CGG | 0.581549 | 7.4:+21067482 | MS.gene41796:CDS |
| CGTCCAATTAACTCAAGCTG+TGG | 0.581642 | 7.4:+21076733 | MS.gene41796:CDS |
| GTCCTCAAGAATCTCTGCGA+TGG | 0.581667 | 7.4:-21074284 | None:intergenic |
| GAATGTGGTAGGGCCATGGA+AGG | 0.582242 | 7.4:-21067316 | None:intergenic |
| GAAAACTGAACAGAATGCTA+AGG | 0.582359 | 7.4:+21088633 | MS.gene41796:CDS |
| TATAGTAAATCCTACTTCTG+AGG | 0.583150 | 7.4:+21071737 | MS.gene41796:CDS |
| ACTTACATGTCGGTCACCAA+CGG | 0.583308 | 7.4:-21067565 | None:intergenic |
| GGACCTTCGAAGGTTGAGAA+TGG | 0.584135 | 7.4:-21067344 | None:intergenic |
| GCACTGCTGCAGGCAAAAGA+CGG | 0.584735 | 7.4:+21082451 | MS.gene41796:CDS |
| CTGCATCAGGAAGCAGTGCT+CGG | 0.586287 | 7.4:-21088531 | None:intergenic |
| TATCATTAGTAATTTGACAA+TGG | 0.588966 | 7.4:+21085129 | MS.gene41796:CDS |
| CTTCCCACATTTCTTAACCA+AGG | 0.591264 | 7.4:-21073124 | None:intergenic |
| TCTTGATAATTCACAGAAAG+GGG | 0.592284 | 7.4:-21070127 | None:intergenic |
| AAGCCTTGGTTAAGAAATGT+GGG | 0.593365 | 7.4:+21073121 | MS.gene41796:CDS |
| GGTTCTGTTACAGTTACGGA+TGG | 0.596302 | 7.4:+21068941 | MS.gene41796:CDS |
| TATCCGTGCCAGCCAGCATG+AGG | 0.596655 | 7.4:-21071782 | None:intergenic |
| TAAACGAGAAGGAAAGACAA+AGG | 0.596829 | 7.4:+21070253 | MS.gene41796:CDS |
| TGTTTATAAAGCTCAGGAGG+AGG | 0.597536 | 7.4:-21073174 | None:intergenic |
| ATCTTCAGATCCAGTTATGT+CGG | 0.597877 | 7.4:-21079277 | None:intergenic |
| CAGGTTGCTGGAAATGAAGA+TGG | 0.600060 | 7.4:+21081635 | MS.gene41796:intron |
| TGCTGCAGGCAAAAGACGGA+AGG | 0.601312 | 7.4:+21082455 | MS.gene41796:CDS |
| TTAGAAAGAAAATACCAAGA+AGG | 0.603398 | 7.4:+21074167 | MS.gene41796:CDS |
| ACCTTCATAACGTGAATCAG+AGG | 0.603485 | 7.4:-21084737 | None:intergenic |
| ACCAGCTGCAGTGACAGCCA+AGG | 0.605652 | 7.4:-21071359 | None:intergenic |
| TTTCCGGGAAGAATTGTCGC+AGG | 0.607212 | 7.4:+21067448 | MS.gene41796:CDS |
| CATTGCAATTCCAGCAATCG+AGG | 0.607395 | 7.4:-21079199 | None:intergenic |
| GAGGCTTGGACTTGGAGAGT+AGG | 0.608338 | 7.4:-21067365 | None:intergenic |
| AGTAGAAGAGAAATTGGTCA+CGG | 0.609345 | 7.4:+21078795 | MS.gene41796:CDS |
| CTATATACTTGTCACCAACA+AGG | 0.609540 | 7.4:-21071719 | None:intergenic |
| CATTCCGTCAAGATTCCCGT+TGG | 0.609692 | 7.4:+21067549 | MS.gene41796:CDS |
| CTGCGTCCTACTATGCCTAA+GGG | 0.611399 | 7.4:+21070520 | MS.gene41796:CDS |
| GGCTTATTACCTAGAGCACA+TGG | 0.613061 | 7.4:+21076754 | MS.gene41796:CDS |
| CTGAACTCAGTTCACTAATG+TGG | 0.613087 | 7.4:-21087403 | None:intergenic |
| TTGGAGAGTAGGACCTTCGA+AGG | 0.615258 | 7.4:-21067354 | None:intergenic |
| CCGCCATTCTCAACCTTCGA+AGG | 0.615304 | 7.4:+21067341 | MS.gene41796:CDS |
| GGAAATCGCTGGTGATGAGT+TGG | 0.615709 | 7.4:+21074129 | MS.gene41796:intron |
| AGGAAAGACAAAGGATCATG+AGG | 0.620066 | 7.4:+21070262 | MS.gene41796:CDS |
| GTAGAAGAGAAATTGGTCAC+GGG | 0.622598 | 7.4:+21078796 | MS.gene41796:CDS |
| TTGAGACTGGTCATATGGGA+AGG | 0.626257 | 7.4:+21068909 | MS.gene41796:CDS |
| AGCATGGCATCTGTTTGTGG+AGG | 0.626639 | 7.4:+21079138 | MS.gene41796:intron |
| GCGGGGAAGCTAGAACGGGG+AGG | 0.627133 | 7.4:-21067396 | None:intergenic |
| TAGGGGAAATCACTATCAGA+AGG | 0.628086 | 7.4:-21078852 | None:intergenic |
| AATTGGACGAATTTCATTTG+GGG | 0.629216 | 7.4:-21076719 | None:intergenic |
| TTCATATAAAGCCAACCCCA+CGG | 0.629572 | 7.4:+21074359 | MS.gene41796:CDS |
| GTGGTGCTTACTAAACGCGT+TGG | 0.631510 | 7.4:-21074385 | None:intergenic |
| AATGGCGGTGGAATGTGGTA+GGG | 0.635010 | 7.4:-21067326 | None:intergenic |
| GAACGGGGAGGGAAGATGAG+AGG | 0.636531 | 7.4:-21067384 | None:intergenic |
| TGGATGTTGATGATTACAAG+AGG | 0.640234 | 7.4:+21077725 | MS.gene41796:CDS |
| GGGAATCTTGACGGAATGCG+GGG | 0.640562 | 7.4:-21067544 | None:intergenic |
| TGCGCTGCAGATAAATGACA+AGG | 0.643501 | 7.4:+21088489 | MS.gene41796:intron |
| AGTGCGAGCAATCTGTAATG+AGG | 0.643613 | 7.4:+21073095 | MS.gene41796:CDS |
| GAGCTTTAATTTCCCAAACG+CGG | 0.644028 | 7.4:-21067415 | None:intergenic |
| ACATGTTTATAAAGCTCAGG+AGG | 0.646335 | 7.4:-21073177 | None:intergenic |
| AATATCATCCAAACAAACAG+TGG | 0.649281 | 7.4:-21070080 | None:intergenic |
| AGAGATAGCACCCGGACGAG+AGG | 0.650207 | 7.4:+21087106 | MS.gene41796:CDS |
| TCACAAATGATACTGCTCCA+AGG | 0.650362 | 7.4:+21074248 | MS.gene41796:CDS |
| GTATCAGTATTACAGGTGGG+TGG | 0.650643 | 7.4:+21082403 | MS.gene41796:intron |
| GACGGAAGGAAACATATACT+CGG | 0.650660 | 7.4:+21082469 | MS.gene41796:CDS |
| GCGTTTGTAGAGATAGCACC+CGG | 0.651688 | 7.4:+21087098 | MS.gene41796:CDS |
| TTAGTGAACTGAGTTCAGGT+TGG | 0.655843 | 7.4:+21087408 | MS.gene41796:CDS |
| AGTACTATCACAGAAAGCAA+TGG | 0.656352 | 7.4:+21078891 | MS.gene41796:CDS |
| CAGTGACAGCCAAGGAATCG+GGG | 0.657199 | 7.4:-21071351 | None:intergenic |
| GAGATCGGTCAGCTCTTCCG+AGG | 0.662555 | 7.4:+21088735 | MS.gene41796:CDS |
| AACCATCGCAGAGATTCTTG+AGG | 0.668422 | 7.4:+21074282 | MS.gene41796:CDS |
| AACGCGGGGAAGCTAGAACG+GGG | 0.673668 | 7.4:-21067399 | None:intergenic |
| TACGCTTGGAGATAACAAGA+TGG | 0.675088 | 7.4:+21077681 | MS.gene41796:CDS |
| CCTTCGAAGGTTGAGAATGG+CGG | 0.675294 | 7.4:-21067341 | None:intergenic |
| GTTATGTCGGACAGAATAAG+CGG | 0.679962 | 7.4:-21079264 | None:intergenic |
| CATATGGGAAGGCAAGCAAG+TGG | 0.683058 | 7.4:+21068920 | MS.gene41796:CDS |
| GCAGTGCTCGGTGACTAAGA+CGG | 0.685802 | 7.4:-21088519 | None:intergenic |
| AAAGACAAGATAAATAAGAG+CGG | 0.686522 | 7.4:+21088775 | MS.gene41796:CDS |
| GCTTTAATTTCCCAAACGCG+GGG | 0.690642 | 7.4:-21067413 | None:intergenic |
| CTTGATAATTCACAGAAAGG+GGG | 0.692656 | 7.4:-21070126 | None:intergenic |
| GGCATACCTAGTGCGACCAG+CGG | 0.694417 | 7.4:-21070161 | None:intergenic |
| TAAACGCGTTGGTTTCCGTG+GGG | 0.702525 | 7.4:-21074374 | None:intergenic |
| ACCTCCCCAACACATGAAGG+AGG | 0.703173 | 7.4:-21078753 | None:intergenic |
| TCTCAACACGAATAGTGTAG+GGG | 0.711379 | 7.4:-21078869 | None:intergenic |
| GCGCTGCAGATAAATGACAA+GGG | 0.713540 | 7.4:+21088490 | MS.gene41796:intron |
| TTAGGCATAGTAGGACGCAG+AGG | 0.735674 | 7.4:-21070517 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 21067294 | 21088837 | 21067294 | ID=MS.gene41796 |
| chr7.4 | mRNA | 21067294 | 21088837 | 21067294 | ID=MS.gene41796.t1;Parent=MS.gene41796 |
| chr7.4 | exon | 21067294 | 21067581 | 21067294 | ID=MS.gene41796.t1.exon1;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21067294 | 21067581 | 21067294 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21068902 | 21068970 | 21068902 | ID=MS.gene41796.t1.exon2;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21068902 | 21068970 | 21068902 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21070070 | 21070176 | 21070070 | ID=MS.gene41796.t1.exon3;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21070070 | 21070176 | 21070070 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21070241 | 21070283 | 21070241 | ID=MS.gene41796.t1.exon4;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21070241 | 21070283 | 21070241 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21070490 | 21070573 | 21070490 | ID=MS.gene41796.t1.exon5;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21070490 | 21070573 | 21070490 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21071325 | 21071389 | 21071325 | ID=MS.gene41796.t1.exon6;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21071325 | 21071389 | 21071325 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21071668 | 21071824 | 21071668 | ID=MS.gene41796.t1.exon7;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21071668 | 21071824 | 21071668 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21072444 | 21072500 | 21072444 | ID=MS.gene41796.t1.exon8;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21072444 | 21072500 | 21072444 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21073090 | 21073203 | 21073090 | ID=MS.gene41796.t1.exon9;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21073090 | 21073203 | 21073090 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21074130 | 21074396 | 21074130 | ID=MS.gene41796.t1.exon10;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21074130 | 21074396 | 21074130 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21076420 | 21076491 | 21076420 | ID=MS.gene41796.t1.exon11;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21076420 | 21076491 | 21076420 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21076694 | 21076807 | 21076694 | ID=MS.gene41796.t1.exon12;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21076694 | 21076807 | 21076694 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21077667 | 21077759 | 21077667 | ID=MS.gene41796.t1.exon13;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21077667 | 21077759 | 21077667 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21078744 | 21078922 | 21078744 | ID=MS.gene41796.t1.exon14;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21078744 | 21078922 | 21078744 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21079140 | 21079323 | 21079140 | ID=MS.gene41796.t1.exon15;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21079140 | 21079323 | 21079140 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21081638 | 21081685 | 21081638 | ID=MS.gene41796.t1.exon16;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21081638 | 21081685 | 21081638 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21082418 | 21082490 | 21082418 | ID=MS.gene41796.t1.exon17;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21082418 | 21082490 | 21082418 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21084684 | 21084757 | 21084684 | ID=MS.gene41796.t1.exon18;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21084684 | 21084757 | 21084684 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21084878 | 21084985 | 21084878 | ID=MS.gene41796.t1.exon19;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21084878 | 21084985 | 21084878 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21085082 | 21085176 | 21085082 | ID=MS.gene41796.t1.exon20;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21085082 | 21085176 | 21085082 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21087064 | 21087127 | 21087064 | ID=MS.gene41796.t1.exon21;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21087064 | 21087127 | 21087064 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21087395 | 21087448 | 21087395 | ID=MS.gene41796.t1.exon22;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21087395 | 21087448 | 21087395 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21087541 | 21087582 | 21087541 | ID=MS.gene41796.t1.exon23;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21087541 | 21087582 | 21087541 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| chr7.4 | exon | 21088499 | 21088837 | 21088499 | ID=MS.gene41796.t1.exon24;Parent=MS.gene41796.t1 |
| chr7.4 | CDS | 21088499 | 21088837 | 21088499 | ID=cds.MS.gene41796.t1;Parent=MS.gene41796.t1 |
| Gene Sequence |
| Protein sequence |
