Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42160.t1 | XP_024626924.1 | 91.6 | 883 | 72 | 2 | 1 | 881 | 1 | 883 | 0.00E+00 | 1327.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42160.t1 | A0A1S3E141 | 84.3 | 885 | 120 | 8 | 1 | 881 | 1 | 870 | 0.0e+00 | 1171.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene42160 | 0.812328 | 4.48E-51 | -1.69E-46 |
| MS.gene05016 | MS.gene42160 | 0.818453 | 1.94E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene42160 | 0.812456 | 4.20E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene42160 | 0.810119 | 1.35E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene42160 | 0.814308 | 1.65E-51 | -1.69E-46 |
| MS.gene050438 | MS.gene42160 | 0.810471 | 1.13E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene42160 | 0.823206 | 1.57E-53 | -1.69E-46 |
| MS.gene050719 | MS.gene42160 | 0.827992 | 1.15E-54 | -1.69E-46 |
| MS.gene050721 | MS.gene42160 | 0.821924 | 3.12E-53 | -1.69E-46 |
| MS.gene050724 | MS.gene42160 | 0.820141 | 8.02E-53 | -1.69E-46 |
| MS.gene050780 | MS.gene42160 | 0.816316 | 5.89E-52 | -1.69E-46 |
| MS.gene050807 | MS.gene42160 | 0.805287 | 1.44E-49 | -1.69E-46 |
| MS.gene050844 | MS.gene42160 | 0.800133 | 1.66E-48 | -1.69E-46 |
| MS.gene050959 | MS.gene42160 | 0.83354 | 5.03E-56 | -1.69E-46 |
| MS.gene051265 | MS.gene42160 | 0.813753 | 2.18E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene42160 | 0.801377 | 9.27E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene42160 | 0.875901 | 2.14E-68 | -1.69E-46 |
| MS.gene05215 | MS.gene42160 | 0.813794 | 2.14E-51 | -1.69E-46 |
| MS.gene052190 | MS.gene42160 | 0.806034 | 1.00E-49 | -1.69E-46 |
| MS.gene052323 | MS.gene42160 | 0.816503 | 5.35E-52 | -1.69E-46 |
| MS.gene052611 | MS.gene42160 | 0.820566 | 6.41E-53 | -1.69E-46 |
| MS.gene052613 | MS.gene42160 | 0.813085 | 3.06E-51 | -1.69E-46 |
| MS.gene052665 | MS.gene42160 | 0.830308 | 3.16E-55 | -1.69E-46 |
| MS.gene052863 | MS.gene42160 | 0.806838 | 6.77E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene42160 | 0.827583 | 1.44E-54 | -1.69E-46 |
| MS.gene053221 | MS.gene42160 | 0.841377 | 4.93E-58 | -1.69E-46 |
| MS.gene053226 | MS.gene42160 | 0.816292 | 5.96E-52 | -1.69E-46 |
| MS.gene054467 | MS.gene42160 | 0.824034 | 1.00E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene42160 | 0.819943 | 8.90E-53 | -1.69E-46 |
| MS.gene055356 | MS.gene42160 | 0.817384 | 3.39E-52 | -1.69E-46 |
| MS.gene055357 | MS.gene42160 | 0.819349 | 1.22E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene42160 | 0.824549 | 7.60E-54 | -1.69E-46 |
| MS.gene055363 | MS.gene42160 | 0.800857 | 1.18E-48 | -1.69E-46 |
| MS.gene055466 | MS.gene42160 | 0.802065 | 6.69E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene42160 | 0.812078 | 5.08E-51 | -1.69E-46 |
| MS.gene055778 | MS.gene42160 | 0.830245 | 3.27E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene42160 | 0.805243 | 1.47E-49 | -1.69E-46 |
| MS.gene05604 | MS.gene42160 | 0.822687 | 2.07E-53 | -1.69E-46 |
| MS.gene056173 | MS.gene42160 | 0.833633 | 4.77E-56 | -1.69E-46 |
| MS.gene056498 | MS.gene42160 | 0.806967 | 6.36E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene42160 | 0.826323 | 2.89E-54 | -1.69E-46 |
| MS.gene056553 | MS.gene42160 | 0.812122 | 4.97E-51 | -1.69E-46 |
| MS.gene056589 | MS.gene42160 | 0.80143 | 9.04E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene42160 | 0.813798 | 2.13E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene42160 | 0.822857 | 1.89E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene42160 | 0.83384 | 4.23E-56 | -1.69E-46 |
| MS.gene058084 | MS.gene42160 | 0.804136 | 2.50E-49 | -1.69E-46 |
| MS.gene058168 | MS.gene42160 | 0.822654 | 2.11E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene42160 | 0.815427 | 9.30E-52 | -1.69E-46 |
| MS.gene058636 | MS.gene42160 | 0.81824 | 2.17E-52 | -1.69E-46 |
| MS.gene058829 | MS.gene42160 | 0.834345 | 3.16E-56 | -1.69E-46 |
| MS.gene059725 | MS.gene42160 | 0.830606 | 2.67E-55 | -1.69E-46 |
| MS.gene059789 | MS.gene42160 | 0.814082 | 1.85E-51 | -1.69E-46 |
| MS.gene060619 | MS.gene42160 | 0.809377 | 1.95E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene42160 | 0.813299 | 2.75E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42160.t1 | MTR_7g075140 | 97.000 | 900 | 22 | 4 | 1 | 898 | 1 | 897 | 0.0 | 1766 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42160.t1 | AT2G45460 | 51.052 | 903 | 361 | 18 | 28 | 891 | 40 | 900 | 0.0 | 775 |
| MS.gene42160.t1 | AT2G45460 | 50.941 | 903 | 361 | 19 | 28 | 891 | 40 | 899 | 0.0 | 768 |
| MS.gene42160.t1 | AT2G45460 | 50.273 | 917 | 361 | 19 | 28 | 891 | 40 | 914 | 0.0 | 765 |
| MS.gene42160.t1 | AT2G45460 | 50.164 | 917 | 361 | 20 | 28 | 891 | 40 | 913 | 0.0 | 759 |
Find 167 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTGCTTCTTGTGTATTT+TGG | 0.205635 | 7.3:-30422458 | None:intergenic |
| CAAATGGAACTTACCTTAAC+TGG | 0.254521 | 7.3:+30416774 | MS.gene42160:CDS |
| CAATTCTGATCCTAATGTTT+GGG | 0.264024 | 7.3:+30415423 | MS.gene42160:CDS |
| GAGAAGCAGAACGCTGAAAA+TGG | 0.287480 | 7.3:+30421004 | MS.gene42160:CDS |
| AAGAGGTTGAGAAGCGAAAT+TGG | 0.291868 | 7.3:-30415398 | None:intergenic |
| GGATTCTGCTGCTGCTTGTT+AGG | 0.295457 | 7.3:-30415331 | None:intergenic |
| TTTGAAAGGAGGAGGTTAAA+AGG | 0.298717 | 7.3:+30421711 | MS.gene42160:CDS |
| TCAAATTGTTCTTTCAAATC+AGG | 0.300884 | 7.3:-30423089 | None:intergenic |
| AACAAGGATGGTCCTTTAGA+AGG | 0.306789 | 7.3:+30422660 | MS.gene42160:CDS |
| CAAGATTACTAATGAAAATA+TGG | 0.313658 | 7.3:+30416599 | MS.gene42160:CDS |
| TGTAGGCACTGAACGAGTTC+TGG | 0.317169 | 7.3:+30422593 | MS.gene42160:CDS |
| AACAAGAGATTGAAAGGTTT+GGG | 0.318095 | 7.3:+30418519 | MS.gene42160:CDS |
| ACAATTCTGATCCTAATGTT+TGG | 0.318610 | 7.3:+30415422 | MS.gene42160:CDS |
| AACAAGAAACAAGAAGATTA+AGG | 0.324877 | 7.3:+30421140 | MS.gene42160:CDS |
| AACAGATACAATGCGATCTT+TGG | 0.333848 | 7.3:-30415371 | None:intergenic |
| AAACAAGAGATTGAAAGGTT+TGG | 0.340768 | 7.3:+30418518 | MS.gene42160:CDS |
| TATGAAGATCGATGATGATA+TGG | 0.348596 | 7.3:+30422689 | MS.gene42160:CDS |
| GGAGATTACATACACTTTCA+TGG | 0.358919 | 7.3:-30418771 | None:intergenic |
| CTTCTGAAGTCGCCGCTAGC+TGG | 0.359986 | 7.3:+30422877 | MS.gene42160:CDS |
| TCAAAAGCAGGGTGATTCTA+TGG | 0.360002 | 7.3:+30423268 | MS.gene42160:CDS |
| TGACAATAATTCTGTAGATA+TGG | 0.366035 | 7.3:+30422257 | MS.gene42160:CDS |
| AATAAAAGATTTACAGCAAA+TGG | 0.374198 | 7.3:+30419054 | MS.gene42160:CDS |
| ACAGGAATTGAGAAAGCAAT+TGG | 0.375970 | 7.3:+30418690 | MS.gene42160:intron |
| AAGCACCAAGTCTTTCATTA+AGG | 0.378156 | 7.3:-30419147 | None:intergenic |
| GGAACCTCGGGAAGAGAAAA+AGG | 0.381881 | 7.3:+30422294 | MS.gene42160:CDS |
| ACACCGAGTTAGATCTTTGA+AGG | 0.386029 | 7.3:-30418587 | None:intergenic |
| CGAAAATCATCAAGAGATAT+AGG | 0.386301 | 7.3:-30418561 | None:intergenic |
| GAGAATTGCCGTTGGATCTC+GGG | 0.390703 | 7.3:-30415309 | None:intergenic |
| ATCATTGTTTGCTAAGCAAC+AGG | 0.392288 | 7.3:+30422188 | MS.gene42160:CDS |
| GGTCTTCGGTTCTGATTAGA+TGG | 0.394887 | 7.3:-30422848 | None:intergenic |
| GAATCATTGTTCAGCACAAA+TGG | 0.396216 | 7.3:+30416758 | MS.gene42160:intron |
| TATGGATGAGGATGAGGAAG+AGG | 0.407916 | 7.3:+30423286 | MS.gene42160:CDS |
| CGGCGACTTCAGAAGTTATA+AGG | 0.408177 | 7.3:-30422869 | None:intergenic |
| TTCAGAAGTTATAAGGTCTT+CGG | 0.409411 | 7.3:-30422862 | None:intergenic |
| ACTGAAAGTCCGTCAAATAA+TGG | 0.412095 | 7.3:+30422618 | MS.gene42160:CDS |
| GAAAGTTCACGACAAGGTAT+TGG | 0.412307 | 7.3:-30422759 | None:intergenic |
| GTGAGAACACCCCAAACATT+AGG | 0.412670 | 7.3:-30415433 | None:intergenic |
| GCAGCATCAGAAGGAGTGTT+TGG | 0.414823 | 7.3:-30423011 | None:intergenic |
| GGAGAATTGCCGTTGGATCT+CGG | 0.419586 | 7.3:-30415310 | None:intergenic |
| TAGAGCGCAGTCTGAGGCTC+AGG | 0.427214 | 7.3:+30420607 | MS.gene42160:CDS |
| ACTATTGAGGTTGCAGAAGC+TGG | 0.428721 | 7.3:+30422822 | MS.gene42160:CDS |
| GAAGAGAAAACCCGCGGAAA+CGG | 0.429973 | 7.3:+30415280 | MS.gene42160:CDS |
| AGGAACTAGGAGATGTCAAC+AGG | 0.430784 | 7.3:+30419092 | MS.gene42160:CDS |
| TAACGGAATTCGAATCAATC+TGG | 0.432142 | 7.3:-30416548 | None:intergenic |
| GAGAAAAGAAGAACGAGAAA+AGG | 0.436015 | 7.3:+30420556 | MS.gene42160:CDS |
| TTGGGCATTGGTGCTGCTGA+GGG | 0.437586 | 7.3:+30418537 | MS.gene42160:CDS |
| GGTTCTGATGTTGATGGTGT+TGG | 0.439214 | 7.3:+30422543 | MS.gene42160:CDS |
| TTCCGTTCACCATTATTTGA+CGG | 0.441204 | 7.3:-30422627 | None:intergenic |
| CGGGGTTCCTCCGTTTCCGC+GGG | 0.443153 | 7.3:-30415290 | None:intergenic |
| TTCTGAAGTCGCCGCTAGCT+GGG | 0.447963 | 7.3:+30422878 | MS.gene42160:CDS |
| AGATTGAAAGGTTTGGGCAT+TGG | 0.450330 | 7.3:+30418525 | MS.gene42160:CDS |
| AGAGACAATAATGAAGGTTC+AGG | 0.450952 | 7.3:+30422951 | MS.gene42160:CDS |
| TGTGTTGGTTCTGATGTTGA+TGG | 0.456042 | 7.3:+30422537 | MS.gene42160:CDS |
| CTCTCCTGCTTGCAGTCAAA+AGG | 0.462865 | 7.3:+30420487 | MS.gene42160:intron |
| CAAATCATTGCAGAATATAC+AGG | 0.467927 | 7.3:+30416574 | MS.gene42160:CDS |
| TTTGGGCATTGGTGCTGCTG+AGG | 0.468907 | 7.3:+30418536 | MS.gene42160:CDS |
| GAGAAAGCAATTGGAGAGTC+AGG | 0.469420 | 7.3:+30418699 | MS.gene42160:CDS |
| CAATGCCCGCAAAAGGCATC+AGG | 0.470674 | 7.3:+30415468 | MS.gene42160:CDS |
| TGGTGATATTATATCATTTG+CGG | 0.473414 | 7.3:+30416838 | MS.gene42160:CDS |
| TTGGCTCCTAAAATTGATGC+TGG | 0.476028 | 7.3:-30415352 | None:intergenic |
| TCTGAAAACAAGAGATTGAA+AGG | 0.477784 | 7.3:+30418513 | MS.gene42160:CDS |
| GAAGCTTGATCAAATACCTA+TGG | 0.479075 | 7.3:+30422719 | MS.gene42160:CDS |
| TCTCTAACAATGCCCGCAAA+AGG | 0.481899 | 7.3:+30415461 | MS.gene42160:CDS |
| AATGGTTGATCTCAAACAAA+AGG | 0.488423 | 7.3:+30419072 | MS.gene42160:CDS |
| GGAGGAGGTTAAAAGGTGCC+AGG | 0.490686 | 7.3:+30421718 | MS.gene42160:CDS |
| GATGTACTTGAGTTTCCAAC+TGG | 0.491314 | 7.3:-30420979 | None:intergenic |
| GCAACTCCATTGTCTGCCAC+AGG | 0.492185 | 7.3:-30417955 | None:intergenic |
| CAATATTCTTGAAAGATACA+AGG | 0.502738 | 7.3:+30416634 | MS.gene42160:CDS |
| TTCATAGTGTCCCCTTCTAA+AGG | 0.503376 | 7.3:-30422672 | None:intergenic |
| ACAAGGATGGTCCTTTAGAA+GGG | 0.504190 | 7.3:+30422661 | MS.gene42160:CDS |
| TGATTCTATGGATGAGGATG+AGG | 0.507637 | 7.3:+30423280 | MS.gene42160:CDS |
| TCATGCTTCTCCGTTTCCAT+AGG | 0.512555 | 7.3:-30422735 | None:intergenic |
| CCGAAGCATGAGTCTTTCCC+TGG | 0.515121 | 7.3:-30421736 | None:intergenic |
| AATATCCGATGAAGAAACTC+AGG | 0.517234 | 7.3:+30423223 | MS.gene42160:CDS |
| CAATCAATCAATGGCGATGG+AGG | 0.521706 | 7.3:+30415258 | None:intergenic |
| AGGCAGCTCGTGAAGAAGCA+TGG | 0.523785 | 7.3:+30421634 | MS.gene42160:CDS |
| GACACTTGCTTCGTTGCTCG+AGG | 0.524264 | 7.3:-30422397 | None:intergenic |
| TGTCGAGGAGGATCAAAAGC+AGG | 0.527285 | 7.3:+30423256 | MS.gene42160:CDS |
| TAAGCAACAGGAACAATTGA+AGG | 0.528373 | 7.3:+30422200 | MS.gene42160:CDS |
| GGAGTCGTAGGTGGAACCTC+GGG | 0.528716 | 7.3:+30422282 | MS.gene42160:CDS |
| AGAAGCAATAAATAAGCTAA+AGG | 0.530408 | 7.3:+30420682 | MS.gene42160:CDS |
| CCAGGGAAAGACTCATGCTT+CGG | 0.531031 | 7.3:+30421736 | MS.gene42160:CDS |
| AGTAACAATGCTGCCAAGGC+AGG | 0.531631 | 7.3:+30422330 | MS.gene42160:CDS |
| AATCAAATGAACTTATAAGT+AGG | 0.531840 | 7.3:+30419188 | MS.gene42160:CDS |
| TGATCAAATACCTATGGAAA+CGG | 0.532572 | 7.3:+30422725 | MS.gene42160:CDS |
| TTGCATTGGACGATTGGTAG+AGG | 0.533917 | 7.3:+30416515 | MS.gene42160:CDS |
| CTGAATCAGATGAACCACTA+TGG | 0.535870 | 7.3:-30423139 | None:intergenic |
| GAAGATGCTGCTTGTCGAGA+GGG | 0.537000 | 7.3:+30423110 | MS.gene42160:CDS |
| TGTTGGCACAACAGCTATGA+TGG | 0.538744 | 7.3:+30422560 | MS.gene42160:CDS |
| GAGAAAACCCGCGGAAACGG+AGG | 0.539376 | 7.3:+30415283 | MS.gene42160:CDS |
| AAAAGCAGAGACAATAATGA+AGG | 0.541321 | 7.3:+30422945 | MS.gene42160:CDS |
| AGAAGTAGTAGATCCTGCCT+TGG | 0.541906 | 7.3:-30422343 | None:intergenic |
| GGAGTTGCTAAACGCAAAGC+AGG | 0.542831 | 7.3:+30417970 | MS.gene42160:CDS |
| TCGGGGTTCCTCCGTTTCCG+CGG | 0.546346 | 7.3:-30415291 | None:intergenic |
| TGAGCATTGCATTGGACGAT+TGG | 0.547667 | 7.3:+30416509 | MS.gene42160:CDS |
| TTTGCGGGCATTGTTAGAGA+TGG | 0.554853 | 7.3:-30415458 | None:intergenic |
| AATAATTCTGTAGATATGGA+TGG | 0.554979 | 7.3:+30422261 | MS.gene42160:CDS |
| TGATAATAAAGTTCGCCAGT+TGG | 0.558041 | 7.3:+30420964 | MS.gene42160:CDS |
| AGCGCAGTCTGAGGCTCAGG+AGG | 0.559183 | 7.3:+30420610 | MS.gene42160:CDS |
| GAACGCTGAAAATGGAATGA+AGG | 0.559703 | 7.3:+30421012 | MS.gene42160:CDS |
| GCAGGGTGATTCTATGGATG+AGG | 0.560143 | 7.3:+30423274 | MS.gene42160:CDS |
| ACTGCTGATGAGCATTGCAT+TGG | 0.560370 | 7.3:+30416501 | MS.gene42160:CDS |
| TCAAATCCTGTGGCAGACAA+TGG | 0.560728 | 7.3:+30417949 | MS.gene42160:CDS |
| CCACAGTAACAATGCTGCCA+AGG | 0.565732 | 7.3:+30422326 | MS.gene42160:CDS |
| CTTGTTAGGAGAATTGCCGT+TGG | 0.566108 | 7.3:-30415317 | None:intergenic |
| TCTGCAATGATTTGCACTAA+CGG | 0.566289 | 7.3:-30416565 | None:intergenic |
| GGCAGCTCGTGAAGAAGCAT+GGG | 0.566802 | 7.3:+30421635 | MS.gene42160:CDS |
| CTGGCAACAGCAGCATCAGA+AGG | 0.569342 | 7.3:-30423020 | None:intergenic |
| TACTGCTCCTTCTTTACATG+AGG | 0.573922 | 7.3:+30422908 | MS.gene42160:CDS |
| GGAGGAACCCCGAGATCCAA+CGG | 0.575822 | 7.3:+30415301 | MS.gene42160:CDS |
| GTCCGTCAAATAATGGTGAA+CGG | 0.575996 | 7.3:+30422625 | MS.gene42160:CDS |
| GAGACAATAATGAAGGTTCA+GGG | 0.577880 | 7.3:+30422952 | MS.gene42160:CDS |
| GCTGCTGTCAAAGTCTGCCA+TGG | 0.578490 | 7.3:+30416818 | MS.gene42160:CDS |
| CCTTGGCAGCATTGTTACTG+TGG | 0.579095 | 7.3:-30422326 | None:intergenic |
| ATCTTTCAAGAATATTGATG+TGG | 0.580701 | 7.3:-30416628 | None:intergenic |
| ATTGAATGATTCAAATATTG+TGG | 0.581409 | 7.3:+30422977 | MS.gene42160:CDS |
| GATCTCAAACAAAAGGAACT+AGG | 0.581520 | 7.3:+30419079 | MS.gene42160:CDS |
| CGAGCACTAAGTGAGATGAT+TGG | 0.582146 | 7.3:+30423056 | MS.gene42160:CDS |
| ACCGTGGTCATGATCAGCAC+TGG | 0.585100 | 7.3:-30422505 | None:intergenic |
| AGAATTGCCGTTGGATCTCG+GGG | 0.588302 | 7.3:-30415308 | None:intergenic |
| AGCAATTCAAAATACACAAG+AGG | 0.590376 | 7.3:+30422473 | MS.gene42160:CDS |
| TGAAACATTGAGATCCAAGC+TGG | 0.591996 | 7.3:+30420820 | MS.gene42160:CDS |
| AATTCTGATCCTAATGTTTG+GGG | 0.595733 | 7.3:+30415424 | MS.gene42160:CDS |
| GACTGTGATATAAGAAGTGA+AGG | 0.596672 | 7.3:+30422432 | MS.gene42160:CDS |
| TGGAGTCGTAGGTGGAACCT+CGG | 0.601679 | 7.3:+30422281 | MS.gene42160:CDS |
| TGATTGTATCTCCTCAGTAG+TGG | 0.602227 | 7.3:-30422169 | None:intergenic |
| AGAAAGAGAAATGTGTGTGC+TGG | 0.602876 | 7.3:+30420796 | MS.gene42160:CDS |
| ATCTTCTAGAGTTCTCTGCA+TGG | 0.603568 | 7.3:-30422223 | None:intergenic |
| AGATACTCAAAAGACTATTG+AGG | 0.612733 | 7.3:+30422809 | MS.gene42160:CDS |
| GTAGATATGGATGGAGTCGT+AGG | 0.616681 | 7.3:+30422270 | MS.gene42160:CDS |
| GGCACAACAGCTATGATGGA+AGG | 0.616762 | 7.3:+30422564 | MS.gene42160:CDS |
| TGAAGATGCTGCTTGTCGAG+AGG | 0.618982 | 7.3:+30423109 | MS.gene42160:CDS |
| TTCATGTTACCATGCTGAGG+AGG | 0.620017 | 7.3:-30416863 | None:intergenic |
| AGTGACACTGGCGATGATGA+TGG | 0.623013 | 7.3:+30423176 | MS.gene42160:CDS |
| CACGGTGTTAGAGATTGTGT+TGG | 0.623995 | 7.3:+30422522 | MS.gene42160:CDS |
| AGTACTGCAAGCCCAGCTAG+CGG | 0.624346 | 7.3:-30422889 | None:intergenic |
| GAGGAGGTTAAAAGGTGCCA+GGG | 0.625120 | 7.3:+30421719 | MS.gene42160:CDS |
| GAAAGAGCTTGAGAGCGAGA+AGG | 0.625683 | 7.3:+30421162 | MS.gene42160:CDS |
| GATATGGATGGAGTCGTAGG+TGG | 0.626616 | 7.3:+30422273 | MS.gene42160:CDS |
| GACACCCTGAGTTTCTTCAT+CGG | 0.628971 | 7.3:-30423228 | None:intergenic |
| AAGCCTTCAAAGATCTAACT+CGG | 0.629170 | 7.3:+30418584 | MS.gene42160:CDS |
| AATCAATCAATCAATGGCGA+TGG | 0.630111 | 7.3:+30415255 | None:intergenic |
| TTTGCGGCTCCTCCTCAGCA+TGG | 0.630396 | 7.3:+30416854 | MS.gene42160:CDS |
| AAATGGAACTTACCTTAACT+GGG | 0.631342 | 7.3:+30416775 | MS.gene42160:CDS |
| ACTGAGAGTTGTAGTGACAC+TGG | 0.633200 | 7.3:+30423164 | MS.gene42160:CDS |
| GTCGAGGAGGATCAAAAGCA+GGG | 0.635450 | 7.3:+30423257 | MS.gene42160:CDS |
| TTAGGATCAGAATTGTGAAG+AGG | 0.635517 | 7.3:-30415415 | None:intergenic |
| AAGTCAGAACCATACCAGCT+TGG | 0.635856 | 7.3:-30420834 | None:intergenic |
| CGAGAGGGAGAAGACCATAG+TGG | 0.640161 | 7.3:+30423125 | MS.gene42160:CDS |
| TGTTCATAGAGCGCAGTCTG+AGG | 0.642720 | 7.3:+30420601 | MS.gene42160:CDS |
| GAATTCATGTTACCATGCTG+AGG | 0.645911 | 7.3:-30416866 | None:intergenic |
| CAAGGATGGTCCTTTAGAAG+GGG | 0.646979 | 7.3:+30422662 | MS.gene42160:CDS |
| TCAGGGTGTCGACCATGTCG+AGG | 0.655020 | 7.3:+30423241 | MS.gene42160:CDS |
| AAGAACAATTAGATGAAGAG+CGG | 0.659624 | 7.3:+30420528 | MS.gene42160:CDS |
| GAATGATTCAAATATTGTGG+TGG | 0.662662 | 7.3:+30422980 | MS.gene42160:CDS |
| GGTGCATGTTTCAAATCCTG+TGG | 0.667295 | 7.3:+30417939 | MS.gene42160:CDS |
| GAAGACCTTAATGAAAGACT+TGG | 0.670417 | 7.3:+30419142 | MS.gene42160:CDS |
| GGGTGTCGACCATGTCGAGG+AGG | 0.674979 | 7.3:+30423244 | MS.gene42160:CDS |
| ACCAGTGCTGATCATGACCA+CGG | 0.679676 | 7.3:+30422504 | MS.gene42160:CDS |
| ATGATGGAAGGAGATACTGT+AGG | 0.681612 | 7.3:+30422576 | MS.gene42160:CDS |
| ATGGAGGAAGAGAAAACCCG+CGG | 0.696453 | 7.3:+30415274 | MS.gene42160:CDS |
| AAAGCAATTGGAGAGTCAGG+TGG | 0.698986 | 7.3:+30418702 | MS.gene42160:CDS |
| ATATCCGATGAAGAAACTCA+GGG | 0.704443 | 7.3:+30423224 | MS.gene42160:CDS |
| GGAACTAGGAGATGTCAACA+GGG | 0.715937 | 7.3:+30419093 | MS.gene42160:CDS |
| TGTTGTGAAAGTTCACGACA+AGG | 0.722117 | 7.3:-30422765 | None:intergenic |
| CAAATGATATAATATCACCA+TGG | 0.723685 | 7.3:-30416835 | None:intergenic |
| CAACACAATCTCTAACACCG+TGG | 0.778065 | 7.3:-30422521 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 30415268 | 30423328 | 30415268 | ID=MS.gene42160 |
| chr7.3 | mRNA | 30415268 | 30423328 | 30415268 | ID=MS.gene42160.t1;Parent=MS.gene42160 |
| chr7.3 | exon | 30415268 | 30415489 | 30415268 | ID=MS.gene42160.t1.exon1;Parent=MS.gene42160.t1 |
| chr7.3 | CDS | 30415268 | 30415489 | 30415268 | ID=cds.MS.gene42160.t1;Parent=MS.gene42160.t1 |
| chr7.3 | exon | 30416483 | 30416655 | 30416483 | ID=MS.gene42160.t1.exon2;Parent=MS.gene42160.t1 |
| chr7.3 | CDS | 30416483 | 30416655 | 30416483 | ID=cds.MS.gene42160.t1;Parent=MS.gene42160.t1 |
| chr7.3 | exon | 30416772 | 30416875 | 30416772 | ID=MS.gene42160.t1.exon3;Parent=MS.gene42160.t1 |
| chr7.3 | CDS | 30416772 | 30416875 | 30416772 | ID=cds.MS.gene42160.t1;Parent=MS.gene42160.t1 |
| chr7.3 | exon | 30417911 | 30417991 | 30417911 | ID=MS.gene42160.t1.exon4;Parent=MS.gene42160.t1 |
| chr7.3 | CDS | 30417911 | 30417991 | 30417911 | ID=cds.MS.gene42160.t1;Parent=MS.gene42160.t1 |
| chr7.3 | exon | 30418502 | 30418605 | 30418502 | ID=MS.gene42160.t1.exon5;Parent=MS.gene42160.t1 |
| chr7.3 | CDS | 30418502 | 30418605 | 30418502 | ID=cds.MS.gene42160.t1;Parent=MS.gene42160.t1 |
| chr7.3 | exon | 30418694 | 30418780 | 30418694 | ID=MS.gene42160.t1.exon6;Parent=MS.gene42160.t1 |
| chr7.3 | CDS | 30418694 | 30418780 | 30418694 | ID=cds.MS.gene42160.t1;Parent=MS.gene42160.t1 |
| chr7.3 | exon | 30419007 | 30419209 | 30419007 | ID=MS.gene42160.t1.exon7;Parent=MS.gene42160.t1 |
| chr7.3 | CDS | 30419007 | 30419209 | 30419007 | ID=cds.MS.gene42160.t1;Parent=MS.gene42160.t1 |
| chr7.3 | exon | 30420502 | 30420703 | 30420502 | ID=MS.gene42160.t1.exon8;Parent=MS.gene42160.t1 |
| chr7.3 | CDS | 30420502 | 30420703 | 30420502 | ID=cds.MS.gene42160.t1;Parent=MS.gene42160.t1 |
| chr7.3 | exon | 30420791 | 30420841 | 30420791 | ID=MS.gene42160.t1.exon9;Parent=MS.gene42160.t1 |
| chr7.3 | CDS | 30420791 | 30420841 | 30420791 | ID=cds.MS.gene42160.t1;Parent=MS.gene42160.t1 |
| chr7.3 | exon | 30420935 | 30421033 | 30420935 | ID=MS.gene42160.t1.exon10;Parent=MS.gene42160.t1 |
| chr7.3 | CDS | 30420935 | 30421033 | 30420935 | ID=cds.MS.gene42160.t1;Parent=MS.gene42160.t1 |
| chr7.3 | exon | 30421124 | 30421183 | 30421124 | ID=MS.gene42160.t1.exon11;Parent=MS.gene42160.t1 |
| chr7.3 | CDS | 30421124 | 30421183 | 30421124 | ID=cds.MS.gene42160.t1;Parent=MS.gene42160.t1 |
| chr7.3 | exon | 30421633 | 30421757 | 30421633 | ID=MS.gene42160.t1.exon12;Parent=MS.gene42160.t1 |
| chr7.3 | CDS | 30421633 | 30421757 | 30421633 | ID=cds.MS.gene42160.t1;Parent=MS.gene42160.t1 |
| chr7.3 | exon | 30422143 | 30423328 | 30422143 | ID=MS.gene42160.t1.exon13;Parent=MS.gene42160.t1 |
| chr7.3 | CDS | 30422143 | 30423328 | 30422143 | ID=cds.MS.gene42160.t1;Parent=MS.gene42160.t1 |
| Gene Sequence |
| Protein sequence |
