Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45370.t1 | XP_003626795.1 | 93.1 | 261 | 18 | 0 | 1 | 261 | 21 | 281 | 1.80E-143 | 518.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45370.t1 | Q84MB3 | 60.2 | 264 | 101 | 2 | 1 | 261 | 20 | 282 | 7.2e-96 | 351.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45370.t1 | G7LCM0 | 93.1 | 261 | 18 | 0 | 1 | 261 | 21 | 281 | 1.3e-143 | 518.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene45370 | 0.810649 | 1.04E-50 | -1.69E-46 |
| MS.gene049171 | MS.gene45370 | 0.817561 | 3.09E-52 | -1.69E-46 |
| MS.gene049222 | MS.gene45370 | 0.825963 | 3.52E-54 | -1.69E-46 |
| MS.gene049285 | MS.gene45370 | 0.806599 | 7.61E-50 | -1.69E-46 |
| MS.gene049320 | MS.gene45370 | 0.809779 | 1.60E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene45370 | 0.81042 | 1.16E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene45370 | 0.815793 | 7.71E-52 | -1.69E-46 |
| MS.gene049633 | MS.gene45370 | 0.814231 | 1.71E-51 | -1.69E-46 |
| MS.gene049805 | MS.gene45370 | 0.823257 | 1.53E-53 | -1.69E-46 |
| MS.gene050163 | MS.gene45370 | 0.802987 | 4.32E-49 | -1.69E-46 |
| MS.gene050444 | MS.gene45370 | 0.813794 | 2.14E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene45370 | 0.806946 | 6.42E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene45370 | 0.836014 | 1.20E-56 | -1.69E-46 |
| MS.gene050772 | MS.gene45370 | 0.810286 | 1.24E-50 | -1.69E-46 |
| MS.gene050950 | MS.gene45370 | 0.833627 | 4.78E-56 | -1.69E-46 |
| MS.gene051228 | MS.gene45370 | 0.803316 | 3.69E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene45370 | 0.816706 | 4.82E-52 | -1.69E-46 |
| MS.gene051838 | MS.gene45370 | 0.816901 | 4.36E-52 | -1.69E-46 |
| MS.gene052050 | MS.gene45370 | -0.800002 | 1.77E-48 | -1.69E-46 |
| MS.gene052164 | MS.gene45370 | 0.801061 | 1.08E-48 | -1.69E-46 |
| MS.gene052501 | MS.gene45370 | 0.822521 | 2.27E-53 | -1.69E-46 |
| MS.gene052503 | MS.gene45370 | 0.822734 | 2.02E-53 | -1.69E-46 |
| MS.gene052505 | MS.gene45370 | 0.818358 | 2.04E-52 | -1.69E-46 |
| MS.gene052823 | MS.gene45370 | 0.816388 | 5.68E-52 | -1.69E-46 |
| MS.gene052825 | MS.gene45370 | 0.817465 | 3.25E-52 | -1.69E-46 |
| MS.gene053103 | MS.gene45370 | 0.807738 | 4.36E-50 | -1.69E-46 |
| MS.gene053104 | MS.gene45370 | 0.806749 | 7.07E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene45370 | 0.803811 | 2.92E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene45370 | 0.808639 | 2.81E-50 | -1.69E-46 |
| MS.gene053286 | MS.gene45370 | 0.804165 | 2.46E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene45370 | 0.802825 | 4.67E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene45370 | 0.811921 | 5.50E-51 | -1.69E-46 |
| MS.gene053912 | MS.gene45370 | 0.811659 | 6.27E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene45370 | 0.8116 | 6.46E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene45370 | 0.825249 | 5.19E-54 | -1.69E-46 |
| MS.gene054884 | MS.gene45370 | -0.802516 | 5.40E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene45370 | 0.805823 | 1.11E-49 | -1.69E-46 |
| MS.gene055748 | MS.gene45370 | 0.810951 | 8.93E-51 | -1.69E-46 |
| MS.gene05664 | MS.gene45370 | 0.843338 | 1.49E-58 | -1.69E-46 |
| MS.gene056657 | MS.gene45370 | 0.80445 | 2.15E-49 | -1.69E-46 |
| MS.gene05666 | MS.gene45370 | 0.814528 | 1.47E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene45370 | 0.826422 | 2.74E-54 | -1.69E-46 |
| MS.gene057658 | MS.gene45370 | 0.836732 | 7.88E-57 | -1.69E-46 |
| MS.gene057734 | MS.gene45370 | 0.814231 | 1.71E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene45370 | 0.820748 | 5.82E-53 | -1.69E-46 |
| MS.gene058544 | MS.gene45370 | 0.849668 | 2.79E-60 | -1.69E-46 |
| MS.gene058773 | MS.gene45370 | 0.800431 | 1.45E-48 | -1.69E-46 |
| MS.gene058838 | MS.gene45370 | 0.838697 | 2.47E-57 | -1.69E-46 |
| MS.gene05934 | MS.gene45370 | 0.805127 | 1.55E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene45370 | 0.815106 | 1.10E-51 | -1.69E-46 |
| MS.gene059718 | MS.gene45370 | 0.81705 | 4.03E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene45370 | 0.830926 | 2.23E-55 | -1.69E-46 |
| MS.gene061150 | MS.gene45370 | 0.825397 | 4.79E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTATTATCAATATCTTTA+AGG | 0.122806 | 8.3:+79897590 | None:intergenic |
| GTTGTTCCCACAGTCAATTC+TGG | 0.240799 | 8.3:+79896771 | None:intergenic |
| AAGTTCTTTATGAAGATAAA+TGG | 0.252533 | 8.3:-79896689 | MS.gene45370:CDS |
| CCTCATATTTGTCTGGTTGA+TGG | 0.257369 | 8.3:+79897650 | None:intergenic |
| AGAGATGTAATACTAGAATA+TGG | 0.271881 | 8.3:-79896933 | MS.gene45370:CDS |
| TCCAAACCATCTAAAAGATA+TGG | 0.330391 | 8.3:-79896847 | MS.gene45370:CDS |
| CATACTGCGGGAAAATCTTC+TGG | 0.333743 | 8.3:+79897286 | None:intergenic |
| AAAATTGCTATTGTAAATAA+AGG | 0.339197 | 8.3:+79897381 | None:intergenic |
| TGCGGGAAAATCTTCTGGTT+TGG | 0.341368 | 8.3:+79897291 | None:intergenic |
| GCGGGAAAATCTTCTGGTTT+GGG | 0.360800 | 8.3:+79897292 | None:intergenic |
| TTGGCTTCCTCATATTTGTC+TGG | 0.377614 | 8.3:+79897643 | None:intergenic |
| CCCACAGTCAATTCTGGTTC+AGG | 0.384551 | 8.3:+79896777 | None:intergenic |
| AAAGATATGGATTGTGCTAA+AGG | 0.404578 | 8.3:-79896834 | MS.gene45370:CDS |
| ATTGATATAACACCTGTTCC+TGG | 0.407869 | 8.3:-79896666 | MS.gene45370:CDS |
| TCTTCTGGTTTGGGAGGATC+AGG | 0.413561 | 8.3:+79897301 | None:intergenic |
| GGGAAACAGGTGATGAATCT+TGG | 0.416565 | 8.3:-79896912 | MS.gene45370:CDS |
| ATAGCTCTCCAGCACTCAAT+TGG | 0.417213 | 8.3:-79897351 | MS.gene45370:CDS |
| ACAATTCCTTGATGAATACT+TGG | 0.419418 | 8.3:+79897565 | None:intergenic |
| AATACTAGAATATGGGAAAC+AGG | 0.420325 | 8.3:-79896925 | MS.gene45370:CDS |
| ATTTATCTTCATAAAGAACT+TGG | 0.428540 | 8.3:+79896691 | None:intergenic |
| TCAAGGAAGCATGTGAAACT+TGG | 0.431792 | 8.3:-79897534 | MS.gene45370:CDS |
| GAATTGATGTCAGAAGCATT+AGG | 0.450460 | 8.3:-79896876 | MS.gene45370:CDS |
| GTTCTTGAGGAGGTGAAAGA+TGG | 0.464397 | 8.3:-79897472 | MS.gene45370:CDS |
| ACTATGAGAGCTCCAGGAAC+AGG | 0.475780 | 8.3:+79896654 | None:intergenic |
| GAACTTGGAGACCACCAATA+TGG | 0.476488 | 8.3:+79896706 | None:intergenic |
| GTGCTTCTACAAGACCATAT+TGG | 0.485099 | 8.3:-79896720 | MS.gene45370:CDS |
| AATAACATGACTTGTGTTGT+TGG | 0.488088 | 8.3:+79897624 | None:intergenic |
| GAGATGTAATACTAGAATAT+GGG | 0.488938 | 8.3:-79896932 | MS.gene45370:CDS |
| CCCTTTGAGTGTTCTTGAGG+AGG | 0.493576 | 8.3:-79897482 | MS.gene45370:CDS |
| CAAGGAAGCATGTGAAACTT+GGG | 0.494320 | 8.3:-79897533 | MS.gene45370:CDS |
| GCTCTCCAGCACTCAATTGG+AGG | 0.521161 | 8.3:-79897348 | MS.gene45370:CDS |
| CTATCCCTCCAATTGAGTGC+TGG | 0.521685 | 8.3:+79897343 | None:intergenic |
| AGGAATTGTTGACGATATCA+AGG | 0.530296 | 8.3:-79897551 | MS.gene45370:CDS |
| GAAACAAAAGCAGGTGTGAA+AGG | 0.532657 | 8.3:-79897715 | MS.gene45370:CDS |
| ACATTAACTATGAGAGCTCC+AGG | 0.533138 | 8.3:+79896648 | None:intergenic |
| CATATTTGTCTGGTTGATGG+TGG | 0.543038 | 8.3:+79897653 | None:intergenic |
| AATCCCTTTGAGTGTTCTTG+AGG | 0.545874 | 8.3:-79897485 | MS.gene45370:CDS |
| ACCTCCTCAAGAACACTCAA+AGG | 0.547379 | 8.3:+79897481 | None:intergenic |
| CCTCCTCAAGAACACTCAAA+GGG | 0.551009 | 8.3:+79897482 | None:intergenic |
| CCATCAACCAGACAAATATG+AGG | 0.555026 | 8.3:-79897650 | MS.gene45370:CDS |
| AGGTGAAAGATGGAGTGAAG+AGG | 0.558342 | 8.3:-79897462 | MS.gene45370:CDS |
| CAATTCCTTGATGAATACTT+GGG | 0.576394 | 8.3:+79897566 | None:intergenic |
| CTCTCCAGCACTCAATTGGA+GGG | 0.578608 | 8.3:-79897347 | MS.gene45370:CDS |
| CAAACATACCTGCATACTGC+GGG | 0.579759 | 8.3:+79897274 | None:intergenic |
| CAGGACAAGAAGGATAGTAA+TGG | 0.586186 | 8.3:+79896796 | None:intergenic |
| AATTCTGGTTCAGGACAAGA+AGG | 0.588777 | 8.3:+79896786 | None:intergenic |
| ATATCTTTAAGGTCGATGAC+AGG | 0.590653 | 8.3:+79897601 | None:intergenic |
| GTGAAAGGACTTGTTGATGC+AGG | 0.590786 | 8.3:-79897700 | MS.gene45370:CDS |
| GCATTTGATGAAACAAAAGC+AGG | 0.595830 | 8.3:-79897724 | MS.gene45370:CDS |
| AAAGACCCAAGTATTCATCA+AGG | 0.600194 | 8.3:-79897571 | MS.gene45370:CDS |
| GGAGCTCTCATAGTTAATGT+TGG | 0.602821 | 8.3:-79896645 | MS.gene45370:CDS |
| GGAAAATCTTCTGGTTTGGG+AGG | 0.607287 | 8.3:+79897295 | None:intergenic |
| GGTTGATGGTGGAATAAGCT+TGG | 0.607514 | 8.3:+79897664 | None:intergenic |
| AAGGAAGCATGTGAAACTTG+GGG | 0.628246 | 8.3:-79897532 | MS.gene45370:CDS |
| CTTCTACAAGACCATATTGG+TGG | 0.634375 | 8.3:-79896717 | MS.gene45370:CDS |
| ACAAACATACCTGCATACTG+CGG | 0.682866 | 8.3:+79897273 | None:intergenic |
| TCCTGAACCAGAATTGACTG+TGG | 0.682984 | 8.3:-79896778 | MS.gene45370:CDS |
| CCTGAACCAGAATTGACTGT+GGG | 0.714206 | 8.3:-79896777 | MS.gene45370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAAAACAAATAAATATT+AGG | - | chr8.3:79897296-79897315 | MS.gene45370:CDS | 10.0% |
| !! | CTTTATTATCAATATCTTTA+AGG | + | chr8.3:79896768-79896787 | None:intergenic | 15.0% |
| !!! | AAAATTGCTATTGTAAATAA+AGG | + | chr8.3:79896977-79896996 | None:intergenic | 15.0% |
| !! | AAGTTCTTTATGAAGATAAA+TGG | - | chr8.3:79897666-79897685 | MS.gene45370:CDS | 20.0% |
| !! | ATTTATCTTCATAAAGAACT+TGG | + | chr8.3:79897667-79897686 | None:intergenic | 20.0% |
| !! | GTAAGGATTAAATTCAATTT+CGG | + | chr8.3:79897361-79897380 | None:intergenic | 20.0% |
| !!! | GTTTTATATTTTGTATCAGT+TGG | + | chr8.3:79897336-79897355 | None:intergenic | 20.0% |
| !!! | TTTTTTCAAGTTGTTAATCA+TGG | - | chr8.3:79896847-79896866 | MS.gene45370:CDS | 20.0% |
| ! | AGAGATGTAATACTAGAATA+TGG | - | chr8.3:79897422-79897441 | MS.gene45370:CDS | 25.0% |
| ! | AGCAACAAAAAAAAACAGTA+AGG | + | chr8.3:79897378-79897397 | None:intergenic | 25.0% |
| ! | ATCTTATAAATAGATCTTCC+TGG | + | chr8.3:79897271-79897290 | None:intergenic | 25.0% |
| ! | GAGATGTAATACTAGAATAT+GGG | - | chr8.3:79897423-79897442 | MS.gene45370:CDS | 25.0% |
| !!! | CACTTTAAGATGTGAAATTA+TGG | - | chr8.3:79897193-79897212 | MS.gene45370:intron | 25.0% |
| AATACTAGAATATGGGAAAC+AGG | - | chr8.3:79897430-79897449 | MS.gene45370:CDS | 30.0% | |
| ACAATTCCTTGATGAATACT+TGG | + | chr8.3:79896793-79896812 | None:intergenic | 30.0% | |
| CAATTCCTTGATGAATACTT+GGG | + | chr8.3:79896792-79896811 | None:intergenic | 30.0% | |
| CACATCTTAAAGTGAATAAG+TGG | + | chr8.3:79897187-79897206 | None:intergenic | 30.0% | |
| GCATGTGTGTAAAATTTATG+CGG | - | chr8.3:79897107-79897126 | MS.gene45370:intron | 30.0% | |
| TATGGATATTGCAACATGTA+GGG | - | chr8.3:79897138-79897157 | MS.gene45370:intron | 30.0% | |
| TCCAAACCATCTAAAAGATA+TGG | - | chr8.3:79897508-79897527 | MS.gene45370:CDS | 30.0% | |
| ! | AAAGATATGGATTGTGCTAA+AGG | - | chr8.3:79897521-79897540 | MS.gene45370:CDS | 30.0% |
| ! | AATAACATGACTTGTGTTGT+TGG | + | chr8.3:79896734-79896753 | None:intergenic | 30.0% |
| ! | ATGAAATGCATATTTTCTCC+AGG | - | chr8.3:79897250-79897269 | MS.gene45370:intron | 30.0% |
| ! | CACAATCCATATCTTTTAGA+TGG | + | chr8.3:79897517-79897536 | None:intergenic | 30.0% |
| ! | TCCATATCTTTTAGATGGTT+TGG | + | chr8.3:79897512-79897531 | None:intergenic | 30.0% |
| !!! | GGATAGTTTTAGTTGTTACT+TGG | - | chr8.3:79897029-79897048 | MS.gene45370:intron | 30.0% |
| AAAGACCCAAGTATTCATCA+AGG | - | chr8.3:79896784-79896803 | MS.gene45370:CDS | 35.0% | |
| AGACTACTTGACTAAGAAGA+AGG | - | chr8.3:79897221-79897240 | MS.gene45370:intron | 35.0% | |
| AGGAATTGTTGACGATATCA+AGG | - | chr8.3:79896804-79896823 | MS.gene45370:CDS | 35.0% | |
| ATTGATATAACACCTGTTCC+TGG | - | chr8.3:79897689-79897708 | MS.gene45370:CDS | 35.0% | |
| GTAAAATTTATGCGGTCAGT+TGG | - | chr8.3:79897115-79897134 | MS.gene45370:intron | 35.0% | |
| GTATGGATATTGCAACATGT+AGG | - | chr8.3:79897137-79897156 | MS.gene45370:intron | 35.0% | |
| !! | ATATCTTTAAGGTCGATGAC+AGG | + | chr8.3:79896757-79896776 | None:intergenic | 35.0% |
| !! | GAATTGATGTCAGAAGCATT+AGG | - | chr8.3:79897479-79897498 | MS.gene45370:CDS | 35.0% |
| AATCCCTTTGAGTGTTCTTG+AGG | - | chr8.3:79896870-79896889 | MS.gene45370:CDS | 40.0% | |
| ACAAACATACCTGCATACTG+CGG | + | chr8.3:79897085-79897104 | None:intergenic | 40.0% | |
| ACATTAACTATGAGAGCTCC+AGG | + | chr8.3:79897710-79897729 | None:intergenic | 40.0% | |
| CAGGACAAGAAGGATAGTAA+TGG | + | chr8.3:79897562-79897581 | None:intergenic | 40.0% | |
| CCATCAACCAGACAAATATG+AGG | - | chr8.3:79896705-79896724 | MS.gene45370:CDS | 40.0% | |
| CCTCATATTTGTCTGGTTGA+TGG | + | chr8.3:79896708-79896727 | None:intergenic | 40.0% | |
| CTTCTACAAGACCATATTGG+TGG | - | chr8.3:79897638-79897657 | MS.gene45370:CDS | 40.0% | |
| GAAACAAAAGCAGGTGTGAA+AGG | - | chr8.3:79896640-79896659 | MS.gene45370:CDS | 40.0% | |
| GGAGCTCTCATAGTTAATGT+TGG | - | chr8.3:79897710-79897729 | MS.gene45370:CDS | 40.0% | |
| GTGCTTCTACAAGACCATAT+TGG | - | chr8.3:79897635-79897654 | MS.gene45370:CDS | 40.0% | |
| TAGGGTTGTGGTTCAAATCT+GGG | - | chr8.3:79897156-79897175 | MS.gene45370:intron | 40.0% | |
| TATTGCAACATGTAGGGTTG+TGG | - | chr8.3:79897144-79897163 | MS.gene45370:intron | 40.0% | |
| TTGGCTTCCTCATATTTGTC+TGG | + | chr8.3:79896715-79896734 | None:intergenic | 40.0% | |
| ! | AAGGAAGCATGTGAAACTTG+GGG | - | chr8.3:79896823-79896842 | MS.gene45370:CDS | 40.0% |
| ! | ATTTATGCGGTCAGTTGGTA+TGG | - | chr8.3:79897120-79897139 | MS.gene45370:intron | 40.0% |
| ! | CAAGGAAGCATGTGAAACTT+GGG | - | chr8.3:79896822-79896841 | MS.gene45370:CDS | 40.0% |
| ! | TCAAGGAAGCATGTGAAACT+TGG | - | chr8.3:79896821-79896840 | MS.gene45370:CDS | 40.0% |
| !! | AATTCTGGTTCAGGACAAGA+AGG | + | chr8.3:79897572-79897591 | None:intergenic | 40.0% |
| !! | CATATTTGTCTGGTTGATGG+TGG | + | chr8.3:79896705-79896724 | None:intergenic | 40.0% |
| ACCTCCTCAAGAACACTCAA+AGG | + | chr8.3:79896877-79896896 | None:intergenic | 45.0% | |
| AGGTGAAAGATGGAGTGAAG+AGG | - | chr8.3:79896893-79896912 | MS.gene45370:CDS | 45.0% | |
| ATAGCTCTCCAGCACTCAAT+TGG | - | chr8.3:79897004-79897023 | MS.gene45370:intron | 45.0% | |
| CAAACATACCTGCATACTGC+GGG | + | chr8.3:79897084-79897103 | None:intergenic | 45.0% | |
| CATACTGCGGGAAAATCTTC+TGG | + | chr8.3:79897072-79897091 | None:intergenic | 45.0% | |
| CCTCCTCAAGAACACTCAAA+GGG | + | chr8.3:79896876-79896895 | None:intergenic | 45.0% | |
| CCTGAACCAGAATTGACTGT+GGG | - | chr8.3:79897578-79897597 | MS.gene45370:CDS | 45.0% | |
| GAACTTGGAGACCACCAATA+TGG | + | chr8.3:79897652-79897671 | None:intergenic | 45.0% | |
| GGGAAACAGGTGATGAATCT+TGG | - | chr8.3:79897443-79897462 | MS.gene45370:CDS | 45.0% | |
| GTAGGGTTGTGGTTCAAATC+TGG | - | chr8.3:79897155-79897174 | MS.gene45370:intron | 45.0% | |
| GTTCTTGAGGAGGTGAAAGA+TGG | - | chr8.3:79896883-79896902 | MS.gene45370:CDS | 45.0% | |
| GTTGTTCCCACAGTCAATTC+TGG | + | chr8.3:79897587-79897606 | None:intergenic | 45.0% | |
| TCCTGAACCAGAATTGACTG+TGG | - | chr8.3:79897577-79897596 | MS.gene45370:CDS | 45.0% | |
| ! | AAGATTTTCCCGCAGTATGC+AGG | - | chr8.3:79897073-79897092 | MS.gene45370:intron | 45.0% |
| ! | TGCGGGAAAATCTTCTGGTT+TGG | + | chr8.3:79897067-79897086 | None:intergenic | 45.0% |
| !! | GCGGGAAAATCTTCTGGTTT+GGG | + | chr8.3:79897066-79897085 | None:intergenic | 45.0% |
| !! | GGAAAATCTTCTGGTTTGGG+AGG | + | chr8.3:79897063-79897082 | None:intergenic | 45.0% |
| !! | GGTTGATGGTGGAATAAGCT+TGG | + | chr8.3:79896694-79896713 | None:intergenic | 45.0% |
| !! | GTGAAAGGACTTGTTGATGC+AGG | - | chr8.3:79896655-79896674 | MS.gene45370:CDS | 45.0% |
| ACTATGAGAGCTCCAGGAAC+AGG | + | chr8.3:79897704-79897723 | None:intergenic | 50.0% | |
| CCCTTTGAGTGTTCTTGAGG+AGG | - | chr8.3:79896873-79896892 | MS.gene45370:CDS | 50.0% | |
| CTATCCCTCCAATTGAGTGC+TGG | + | chr8.3:79897015-79897034 | None:intergenic | 50.0% | |
| CTCTCCAGCACTCAATTGGA+GGG | - | chr8.3:79897008-79897027 | MS.gene45370:intron | 50.0% | |
| !! | CCCACAGTCAATTCTGGTTC+AGG | + | chr8.3:79897581-79897600 | None:intergenic | 50.0% |
| !! | TCTTCTGGTTTGGGAGGATC+AGG | + | chr8.3:79897057-79897076 | None:intergenic | 50.0% |
| GCTCTCCAGCACTCAATTGG+AGG | - | chr8.3:79897007-79897026 | MS.gene45370:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 79896632 | 79897745 | 79896632 | ID=MS.gene45370 |
| chr8.3 | mRNA | 79896632 | 79897745 | 79896632 | ID=MS.gene45370.t1;Parent=MS.gene45370 |
| chr8.3 | exon | 79897283 | 79897745 | 79897283 | ID=MS.gene45370.t1.exon1;Parent=MS.gene45370.t1 |
| chr8.3 | CDS | 79897283 | 79897745 | 79897283 | ID=cds.MS.gene45370.t1;Parent=MS.gene45370.t1 |
| chr8.3 | exon | 79896632 | 79896953 | 79896632 | ID=MS.gene45370.t1.exon2;Parent=MS.gene45370.t1 |
| chr8.3 | CDS | 79896632 | 79896953 | 79896632 | ID=cds.MS.gene45370.t1;Parent=MS.gene45370.t1 |
| Gene Sequence |
| Protein sequence |
