Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46040.t1 | XP_013443248.1 | 81 | 343 | 46 | 8 | 1 | 336 | 1 | 331 | 1.70E-134 | 489.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46040.t1 | A0A072TK54 | 81.0 | 343 | 46 | 8 | 1 | 336 | 1 | 331 | 1.2e-134 | 489.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene46040 | -0.845764 | 3.31E-59 | -1.69E-46 |
| MS.gene049222 | MS.gene46040 | -0.811357 | 7.29E-51 | -1.69E-46 |
| MS.gene049285 | MS.gene46040 | -0.825415 | 4.75E-54 | -1.69E-46 |
| MS.gene049320 | MS.gene46040 | -0.811956 | 5.40E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene46040 | -0.832192 | 1.09E-55 | -1.69E-46 |
| MS.gene050496 | MS.gene46040 | -0.823199 | 1.57E-53 | -1.69E-46 |
| MS.gene050504 | MS.gene46040 | -0.829726 | 4.38E-55 | -1.69E-46 |
| MS.gene050518 | MS.gene46040 | -0.81698 | 4.18E-52 | -1.69E-46 |
| MS.gene050577 | MS.gene46040 | -0.838499 | 2.77E-57 | -1.69E-46 |
| MS.gene050612 | MS.gene46040 | -0.815988 | 6.97E-52 | -1.69E-46 |
| MS.gene050699 | MS.gene46040 | -0.826236 | 3.03E-54 | -1.69E-46 |
| MS.gene050876 | MS.gene46040 | -0.801183 | 1.02E-48 | -1.69E-46 |
| MS.gene050904 | MS.gene46040 | -0.82069 | 6.00E-53 | -1.69E-46 |
| MS.gene050986 | MS.gene46040 | -0.817839 | 2.68E-52 | -1.69E-46 |
| MS.gene051317 | MS.gene46040 | -0.819062 | 1.41E-52 | -1.69E-46 |
| MS.gene052164 | MS.gene46040 | -0.807709 | 4.43E-50 | -1.69E-46 |
| MS.gene052482 | MS.gene46040 | -0.806692 | 7.27E-50 | -1.69E-46 |
| MS.gene052486 | MS.gene46040 | -0.808185 | 3.51E-50 | -1.69E-46 |
| MS.gene052503 | MS.gene46040 | -0.803715 | 3.05E-49 | -1.69E-46 |
| MS.gene052823 | MS.gene46040 | -0.806556 | 7.77E-50 | -1.69E-46 |
| MS.gene052825 | MS.gene46040 | -0.803131 | 4.04E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene46040 | -0.803948 | 2.73E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene46040 | -0.867515 | 1.29E-65 | -1.69E-46 |
| MS.gene054954 | MS.gene46040 | -0.843106 | 1.72E-58 | -1.69E-46 |
| MS.gene055134 | MS.gene46040 | 0.84737 | 1.21E-59 | -1.69E-46 |
| MS.gene055362 | MS.gene46040 | -0.824391 | 8.28E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene46040 | -0.813546 | 2.42E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene46040 | -0.811912 | 5.52E-51 | -1.69E-46 |
| MS.gene055748 | MS.gene46040 | -0.844679 | 6.51E-59 | -1.69E-46 |
| MS.gene055750 | MS.gene46040 | -0.828311 | 9.65E-55 | -1.69E-46 |
| MS.gene055751 | MS.gene46040 | -0.846506 | 2.08E-59 | -1.69E-46 |
| MS.gene055776 | MS.gene46040 | -0.814399 | 1.57E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene46040 | -0.84879 | 4.90E-60 | -1.69E-46 |
| MS.gene056266 | MS.gene46040 | -0.801893 | 7.26E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene46040 | -0.838275 | 3.17E-57 | -1.69E-46 |
| MS.gene056510 | MS.gene46040 | -0.83119 | 1.92E-55 | -1.69E-46 |
| MS.gene056657 | MS.gene46040 | -0.803927 | 2.76E-49 | -1.69E-46 |
| MS.gene057658 | MS.gene46040 | -0.803736 | 3.02E-49 | -1.69E-46 |
| MS.gene057831 | MS.gene46040 | -0.802366 | 5.80E-49 | -1.69E-46 |
| MS.gene058334 | MS.gene46040 | 0.826806 | 2.22E-54 | -1.69E-46 |
| MS.gene058419 | MS.gene46040 | -0.824084 | 9.78E-54 | -1.69E-46 |
| MS.gene058544 | MS.gene46040 | -0.815289 | 9.98E-52 | -1.69E-46 |
| MS.gene058838 | MS.gene46040 | -0.808967 | 2.39E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene46040 | -0.82529 | 5.08E-54 | -1.69E-46 |
| MS.gene059023 | MS.gene46040 | -0.847941 | 8.41E-60 | -1.69E-46 |
| MS.gene059677 | MS.gene46040 | -0.836824 | 7.46E-57 | -1.69E-46 |
| MS.gene059718 | MS.gene46040 | -0.809992 | 1.44E-50 | -1.69E-46 |
| MS.gene059756 | MS.gene46040 | -0.801917 | 7.18E-49 | -1.69E-46 |
| MS.gene059837 | MS.gene46040 | -0.83104 | 2.09E-55 | -1.69E-46 |
| MS.gene059865 | MS.gene46040 | -0.824398 | 8.25E-54 | -1.69E-46 |
| MS.gene06000 | MS.gene46040 | -0.813219 | 2.86E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene46040 | -0.8232 | 1.57E-53 | -1.69E-46 |
| MS.gene060762 | MS.gene46040 | -0.83234 | 9.99E-56 | -1.69E-46 |
| MS.gene06077 | MS.gene46040 | -0.842182 | 3.02E-58 | -1.69E-46 |
| MS.gene060982 | MS.gene46040 | -0.842685 | 2.22E-58 | -1.69E-46 |
| MS.gene061150 | MS.gene46040 | -0.806678 | 7.32E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46040.t1 | MTR_0027s0090 | 85.423 | 343 | 31 | 8 | 1 | 336 | 1 | 331 | 0.0 | 522 |
| MS.gene46040.t1 | MTR_4g019840 | 28.146 | 302 | 143 | 13 | 51 | 335 | 9 | 253 | 9.21e-14 | 71.6 |
| MS.gene46040.t1 | MTR_5g081460 | 31.471 | 340 | 164 | 15 | 44 | 347 | 18 | 324 | 3.59e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46040.t1 | AT3G54000 | 31.672 | 341 | 173 | 17 | 5 | 330 | 8 | 303 | 4.52e-19 | 87.4 |
| MS.gene46040.t1 | AT3G54000 | 30.878 | 353 | 184 | 17 | 5 | 342 | 8 | 315 | 4.87e-19 | 87.8 |
| MS.gene46040.t1 | AT3G54000 | 30.031 | 323 | 166 | 17 | 5 | 312 | 8 | 285 | 6.81e-12 | 66.2 |
Find 70 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATATAGTCTTCAAGCTTT+AGG | 0.234041 | 7.2:-42968963 | None:intergenic |
| CAATCAACCCTATGTGCTTT+TGG | 0.244653 | 7.2:+42967826 | MS.gene46040:CDS |
| GTCTTCAAGCTTTAGGTTAA+GGG | 0.268229 | 7.2:-42968956 | None:intergenic |
| TGATGAACCTTTGCGGCATT+TGG | 0.275294 | 7.2:-42967857 | None:intergenic |
| CTGAAAGGCTGAACACAATA+AGG | 0.279562 | 7.2:+42968215 | MS.gene46040:CDS |
| GCGGGTATGCAGAAGCAAAA+TGG | 0.310089 | 7.2:+42968238 | MS.gene46040:CDS |
| AGTCTTCAAGCTTTAGGTTA+AGG | 0.313871 | 7.2:-42968957 | None:intergenic |
| AACAACAACGTTGCTGGTTT+AGG | 0.336273 | 7.2:+42968322 | MS.gene46040:CDS |
| GCATTCTCACAAACACCATT+AGG | 0.337817 | 7.2:-42967892 | None:intergenic |
| ATTTGGACGACGGTGAGTTC+TGG | 0.351343 | 7.2:+42967407 | MS.gene46040:CDS |
| AGGGTTGTGGAGTTTGAATT+TGG | 0.367866 | 7.2:-42968390 | None:intergenic |
| CGGGTATGCAGAAGCAAAAT+GGG | 0.371790 | 7.2:+42968239 | MS.gene46040:CDS |
| GTTATGATTCTCAGAGGCTT+TGG | 0.379710 | 7.2:-42967677 | None:intergenic |
| TTGTTCATCATCATCACTTT+CGG | 0.387515 | 7.2:-42967602 | None:intergenic |
| AAACACCATTAGGGCTTCCT+TGG | 0.391799 | 7.2:-42967882 | None:intergenic |
| GTTGAATTTCTTGATTCAAC+AGG | 0.398365 | 7.2:-42968481 | None:intergenic |
| CATTCTCACAAACACCATTA+GGG | 0.402675 | 7.2:-42967891 | None:intergenic |
| AGCGAAAGCGAAGAAGGTTT+CGG | 0.413750 | 7.2:-42967484 | None:intergenic |
| AATGGTTATGGTAGCAGTAC+TGG | 0.435118 | 7.2:+42968436 | MS.gene46040:CDS |
| AGGGCATGCGCCACTCTAGC+TGG | 0.436782 | 7.2:-42968937 | None:intergenic |
| TCAAGCCAAGGAAGCCCTAA+TGG | 0.437674 | 7.2:+42967877 | MS.gene46040:CDS |
| CTTGGCTTGATGAACCTTTG+CGG | 0.440983 | 7.2:-42967864 | None:intergenic |
| AGGGGATTTGATGTAACAAA+AGG | 0.449526 | 7.2:+42969443 | MS.gene46040:CDS |
| GGGGAAGAAGAATTTCTTTG+AGG | 0.452557 | 7.2:-42967994 | None:intergenic |
| AAAGCTTGAAGACTATATAG+TGG | 0.470534 | 7.2:+42968966 | MS.gene46040:CDS |
| TTGAAAAGCGAAAGCGAAGA+AGG | 0.482963 | 7.2:-42967490 | None:intergenic |
| GGAGGAAGAAATGTTGTTGA+TGG | 0.488016 | 7.2:+42968289 | MS.gene46040:CDS |
| TGTTGAGCATGTTGTAGTGT+TGG | 0.499882 | 7.2:-42968364 | None:intergenic |
| GTCATTTCCAAAAGCACATA+GGG | 0.503258 | 7.2:-42967833 | None:intergenic |
| TCAGAACAAGCGAATCCATA+AGG | 0.503685 | 7.2:-42967538 | None:intergenic |
| ATGATGAAAATGTTATGAAA+TGG | 0.513671 | 7.2:+42969372 | MS.gene46040:CDS |
| AAATGGTCCTTTGATTTGCT+TGG | 0.515224 | 7.2:+42969389 | MS.gene46040:CDS |
| TTTCAGCAAAGACAAACAAA+TGG | 0.515645 | 7.2:+42968268 | MS.gene46040:CDS |
| TGTAGCTTGTGCAACTGCAT+TGG | 0.518913 | 7.2:+42968912 | MS.gene46040:intron |
| TAGGTTTGTCATCATCTGCA+TGG | 0.523719 | 7.2:+42968341 | MS.gene46040:CDS |
| ACAGCTCTCATGTAGGGTTG+TGG | 0.529286 | 7.2:-42968403 | None:intergenic |
| TGAAAGGCTGAACACAATAA+GGG | 0.531358 | 7.2:+42968216 | MS.gene46040:CDS |
| GTCGTCCAAATTCTCAGCCA+TGG | 0.533502 | 7.2:-42967395 | None:intergenic |
| GAATCATAACAACAATAACT+TGG | 0.540471 | 7.2:+42967690 | MS.gene46040:CDS |
| GAAGCAGCAAGAGAATCAAT+TGG | 0.541993 | 7.2:-42967571 | None:intergenic |
| AAGCTTGAAGACTATATAGT+GGG | 0.550779 | 7.2:+42968967 | MS.gene46040:CDS |
| AGTCATTTCCAAAAGCACAT+AGG | 0.552956 | 7.2:-42967834 | None:intergenic |
| TGTGTCGTCACCGTCGTCGT+CGG | 0.554477 | 7.2:-42967449 | None:intergenic |
| AGGAAAACAGCTCTCATGTA+GGG | 0.557045 | 7.2:-42968409 | None:intergenic |
| CAGAGGCTTTGGAATCAACA+TGG | 0.562511 | 7.2:-42967666 | None:intergenic |
| TGCTACCATAACCATTTCCA+AGG | 0.565265 | 7.2:-42968429 | None:intergenic |
| TGCATTGGTTCCAGCTAGAG+TGG | 0.566049 | 7.2:+42968927 | MS.gene46040:CDS |
| AAGGAAAACAGCTCTCATGT+AGG | 0.571063 | 7.2:-42968410 | None:intergenic |
| TTTCTTGATTCAACAGGACG+AGG | 0.572592 | 7.2:-42968475 | None:intergenic |
| CGCAAAGGTTCATCAAGCCA+AGG | 0.586184 | 7.2:+42967865 | MS.gene46040:CDS |
| AATGCTACCAAGCAAATCAA+AGG | 0.589835 | 7.2:-42969396 | None:intergenic |
| TGATAATGAGAAAGTGATTG+TGG | 0.597158 | 7.2:-42968066 | None:intergenic |
| TATGGTAGCAGTACTGGCAC+TGG | 0.599660 | 7.2:+42968442 | MS.gene46040:CDS |
| AATGACTCCAAATGCCGCAA+AGG | 0.600691 | 7.2:+42967850 | MS.gene46040:CDS |
| AGGCTGAACACAATAAGGGC+GGG | 0.606490 | 7.2:+42968220 | MS.gene46040:CDS |
| CAGCAAAGACAAACAAATGG+AGG | 0.610080 | 7.2:+42968271 | MS.gene46040:CDS |
| TTTGGATGGTAAAGTAACAG+GGG | 0.623580 | 7.2:-42968013 | None:intergenic |
| ATTGTTGTTATGATTCTCAG+AGG | 0.625609 | 7.2:-42967683 | None:intergenic |
| TTTGGAATCAACATGGAGAG+AGG | 0.627829 | 7.2:-42967659 | None:intergenic |
| GGCAACAACAAATTGCTGAA+AGG | 0.630304 | 7.2:+42968200 | MS.gene46040:CDS |
| GGGTATGCAGAAGCAAAATG+GGG | 0.639834 | 7.2:+42968240 | MS.gene46040:CDS |
| CAGTTTCTCTCCGACGACGA+CGG | 0.644936 | 7.2:+42967439 | MS.gene46040:CDS |
| AAAGCACATAGGGTTGATTG+TGG | 0.656361 | 7.2:-42967823 | None:intergenic |
| ATGCAACAGATTCAAAGTAG+AGG | 0.656365 | 7.2:-42967923 | None:intergenic |
| AAGGCTGAACACAATAAGGG+CGG | 0.671077 | 7.2:+42968219 | MS.gene46040:CDS |
| GGTATGCAGAAGCAAAATGG+GGG | 0.674755 | 7.2:+42968241 | MS.gene46040:CDS |
| AGCTTGAAGACTATATAGTG+GGG | 0.692039 | 7.2:+42968968 | MS.gene46040:CDS |
| ATGGCTGAGAATTTGGACGA+CGG | 0.701971 | 7.2:+42967397 | MS.gene46040:CDS |
| TCGTCGGAGAGAAACTGCGG+CGG | 0.707718 | 7.2:-42967433 | None:intergenic |
| TCGTCGTCGGAGAGAAACTG+CGG | 0.728597 | 7.2:-42967436 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTATTTATTTAATCAAAA+GGG | + | chr7.2:42969165-42969184 | MS.gene46040:intron | 10.0% |
| !! | TGTTTATTTATTTAATCAAA+AGG | + | chr7.2:42969164-42969183 | MS.gene46040:intron | 10.0% |
| !! | TTTATTTATTTAATCAAAAG+GGG | + | chr7.2:42969166-42969185 | MS.gene46040:intron | 10.0% |
| !!! | AAAAAAAAAACTAGTTTATA+AGG | - | chr7.2:42969119-42969138 | None:intergenic | 10.0% |
| !!! | AAAAAAAAACTAGTTTATAA+GGG | - | chr7.2:42969118-42969137 | None:intergenic | 10.0% |
| !!! | TTATATATTTTTTCCTTTTA+GGG | + | chr7.2:42967755-42967774 | MS.gene46040:intron | 10.0% |
| !!! | TTTATATATTTTTTCCTTTT+AGG | + | chr7.2:42967754-42967773 | MS.gene46040:intron | 10.0% |
| !! | AAATTATTAAAAATCACAAC+CGG | - | chr7.2:42968802-42968821 | None:intergenic | 15.0% |
| !! | CAACTTAATTAATGTAATTA+AGG | - | chr7.2:42969068-42969087 | None:intergenic | 15.0% |
| !! | TAAACACAATTAATAAATCA+AGG | - | chr7.2:42968841-42968860 | None:intergenic | 15.0% |
| !! | TTATTTATTTAATCAAAAGG+GGG | + | chr7.2:42969167-42969186 | MS.gene46040:intron | 15.0% |
| !!! | TGCATTTTTTTTTGTTTTTT+TGG | + | chr7.2:42967715-42967734 | MS.gene46040:intron | 15.0% |
| !! | AAAATATATAAAACCCCAAA+AGG | - | chr7.2:42967746-42967765 | None:intergenic | 20.0% |
| !! | ACAAAAACCACAAAAAAAAT+TGG | - | chr7.2:42968889-42968908 | None:intergenic | 20.0% |
| !! | ATGATGAAAATGTTATGAAA+TGG | + | chr7.2:42969372-42969391 | MS.gene46040:CDS | 20.0% |
| !!! | AACTTTACCAATTTTTTTTG+TGG | + | chr7.2:42968879-42968898 | MS.gene46040:intron | 20.0% |
| !!! | AATGTTTTAATGCATTTAAG+AGG | + | chr7.2:42968608-42968627 | MS.gene46040:intron | 20.0% |
| !!! | ATGTTTTAATGCATTTAAGA+GGG | + | chr7.2:42968609-42968628 | MS.gene46040:intron | 20.0% |
| !!! | TTTAAAATGTTACAACACAA+TGG | + | chr7.2:42968658-42968677 | MS.gene46040:intron | 20.0% |
| !!! | TTTTAATTGTTTTGAATGTG+TGG | + | chr7.2:42968775-42968794 | MS.gene46040:intron | 20.0% |
| !!! | TTTTTTTGGTTTTTCCTTTT+GGG | + | chr7.2:42967729-42967748 | MS.gene46040:intron | 20.0% |
| ! | AATTAACATCATCATCATCA+TGG | - | chr7.2:42968534-42968553 | None:intergenic | 25.0% |
| ! | AGAAATTCAACAAAAAAACC+AGG | + | chr7.2:42968493-42968512 | MS.gene46040:CDS | 25.0% |
| ! | ATTAACATCATCATCATCAT+GGG | - | chr7.2:42968533-42968552 | None:intergenic | 25.0% |
| ! | CCTAAATCATAAACGAAAAA+CGG | - | chr7.2:42968726-42968745 | None:intergenic | 25.0% |
| ! | CTAAATCATAAACGAAAAAC+GGG | - | chr7.2:42968725-42968744 | None:intergenic | 25.0% |
| ! | GAATCATAACAACAATAACT+TGG | + | chr7.2:42967690-42967709 | MS.gene46040:CDS | 25.0% |
| !!! | GTTTTTTTGGTTTTTCCTTT+TGG | + | chr7.2:42967728-42967747 | MS.gene46040:intron | 25.0% |
| !!! | TTTTTTGGTTTTTCCTTTTG+GGG | + | chr7.2:42967730-42967749 | MS.gene46040:intron | 25.0% |
| AAAGCTTGAAGACTATATAG+TGG | + | chr7.2:42968966-42968985 | MS.gene46040:CDS | 30.0% | |
| AAGCTTGAAGACTATATAGT+GGG | + | chr7.2:42968967-42968986 | MS.gene46040:CDS | 30.0% | |
| CTATATAGTCTTCAAGCTTT+AGG | - | chr7.2:42968966-42968985 | None:intergenic | 30.0% | |
| GTTGAATTTCTTGATTCAAC+AGG | - | chr7.2:42968484-42968503 | None:intergenic | 30.0% | |
| TTGTTCATCATCATCACTTT+CGG | - | chr7.2:42967605-42967624 | None:intergenic | 30.0% | |
| TTTCAGCAAAGACAAACAAA+TGG | + | chr7.2:42968268-42968287 | MS.gene46040:CDS | 30.0% | |
| ! | AGTACCATTTTCAACATTAG+AGG | - | chr7.2:42969031-42969050 | None:intergenic | 30.0% |
| ! | ATTGTTGTTATGATTCTCAG+AGG | - | chr7.2:42967686-42967705 | None:intergenic | 30.0% |
| ! | TGATAATGAGAAAGTGATTG+TGG | - | chr7.2:42968069-42968088 | None:intergenic | 30.0% |
| ! | TTAATGTACGTTTTTGCTAC+TGG | + | chr7.2:42968752-42968771 | MS.gene46040:intron | 30.0% |
| ! | TTTTGGATGGTAAAGTAACA+GGG | - | chr7.2:42968017-42968036 | None:intergenic | 30.0% |
| ! | TTTTTGGATGGTAAAGTAAC+AGG | - | chr7.2:42968018-42968037 | None:intergenic | 30.0% |
| !! | ATTTGCTTGGTAGCATTTTA+AGG | + | chr7.2:42969402-42969421 | MS.gene46040:CDS | 30.0% |
| !! | CCGTTTTTCGTTTATGATTT+AGG | + | chr7.2:42968723-42968742 | MS.gene46040:intron | 30.0% |
| !! | TTTGCTTGGTAGCATTTTAA+GGG | + | chr7.2:42969403-42969422 | MS.gene46040:CDS | 30.0% |
| !!! | GTTTTTATTGTCGTTTTGCA+GGG | + | chr7.2:42967793-42967812 | MS.gene46040:intron | 30.0% |
| !!! | TGTACGTTTTTTTGCGTTTT+TGG | + | chr7.2:42968581-42968600 | MS.gene46040:intron | 30.0% |
| AATCCATAAGGAAAAAGCAG+AGG | - | chr7.2:42967529-42967548 | None:intergenic | 35.0% | |
| AATGCTACCAAGCAAATCAA+AGG | - | chr7.2:42969399-42969418 | None:intergenic | 35.0% | |
| AGCTTGAAGACTATATAGTG+GGG | + | chr7.2:42968968-42968987 | MS.gene46040:CDS | 35.0% | |
| AGGGGATTTGATGTAACAAA+AGG | + | chr7.2:42969443-42969462 | MS.gene46040:CDS | 35.0% | |
| ATGCAACAGATTCAAAGTAG+AGG | - | chr7.2:42967926-42967945 | None:intergenic | 35.0% | |
| CAAAAAAGCTCAAATCAGCA+GGG | - | chr7.2:42968044-42968063 | None:intergenic | 35.0% | |
| CAAAACGCAAAAACCCTAAA+AGG | - | chr7.2:42967771-42967790 | None:intergenic | 35.0% | |
| CATTCTCACAAACACCATTA+GGG | - | chr7.2:42967894-42967913 | None:intergenic | 35.0% | |
| TCCACCTCTAATGTTGAAAA+TGG | + | chr7.2:42969024-42969043 | MS.gene46040:intron | 35.0% | |
| TGAAAGGCTGAACACAATAA+GGG | + | chr7.2:42968216-42968235 | MS.gene46040:CDS | 35.0% | |
| TGGGAAAAAAAGTAATCACC+TGG | - | chr7.2:42968514-42968533 | None:intergenic | 35.0% | |
| TTTGGATGGTAAAGTAACAG+GGG | - | chr7.2:42968016-42968035 | None:intergenic | 35.0% | |
| ! | ACCATTTTCAACATTAGAGG+TGG | - | chr7.2:42969028-42969047 | None:intergenic | 35.0% |
| ! | AGTCATTTCCAAAAGCACAT+AGG | - | chr7.2:42967837-42967856 | None:intergenic | 35.0% |
| ! | GTCATTTCCAAAAGCACATA+GGG | - | chr7.2:42967836-42967855 | None:intergenic | 35.0% |
| ! | GTTTTCCTTGGAAATGGTTA+TGG | + | chr7.2:42968424-42968443 | MS.gene46040:CDS | 35.0% |
| !! | AAATGGTCCTTTGATTTGCT+TGG | + | chr7.2:42969389-42969408 | MS.gene46040:CDS | 35.0% |
| !! | AGTCTTCAAGCTTTAGGTTA+AGG | - | chr7.2:42968960-42968979 | None:intergenic | 35.0% |
| !! | GGTAGCATTTTAAGGGATTT+GGG | + | chr7.2:42969410-42969429 | MS.gene46040:CDS | 35.0% |
| !! | GTAGCATTTTAAGGGATTTG+GGG | + | chr7.2:42969411-42969430 | MS.gene46040:CDS | 35.0% |
| !! | GTCTTCAAGCTTTAGGTTAA+GGG | - | chr7.2:42968959-42968978 | None:intergenic | 35.0% |
| !! | TAGCATTTTAAGGGATTTGG+GGG | + | chr7.2:42969412-42969431 | MS.gene46040:CDS | 35.0% |
| !! | TGGTAGCATTTTAAGGGATT+TGG | + | chr7.2:42969409-42969428 | MS.gene46040:CDS | 35.0% |
| !!! | ATTGTTTTGAATGTGTGGAC+CGG | + | chr7.2:42968780-42968799 | MS.gene46040:intron | 35.0% |
| !!! | CGTTTTTATTGTCGTTTTGC+AGG | + | chr7.2:42967792-42967811 | MS.gene46040:intron | 35.0% |
| !!! | GATTTTAGTTGCAGAGGATT+AGG | + | chr7.2:42968179-42968198 | MS.gene46040:intron | 35.0% |
| AACAACAACAACAACGTTGC+TGG | + | chr7.2:42968316-42968335 | MS.gene46040:CDS | 40.0% | |
| AAGGAAAACAGCTCTCATGT+AGG | - | chr7.2:42968413-42968432 | None:intergenic | 40.0% | |
| AATGGTTATGGTAGCAGTAC+TGG | + | chr7.2:42968436-42968455 | MS.gene46040:CDS | 40.0% | |
| ACATTATTACCCCTATGCCT+TGG | - | chr7.2:42969250-42969269 | None:intergenic | 40.0% | |
| AGGAAAACAGCTCTCATGTA+GGG | - | chr7.2:42968412-42968431 | None:intergenic | 40.0% | |
| AGGGTTGTGGAGTTTGAATT+TGG | - | chr7.2:42968393-42968412 | None:intergenic | 40.0% | |
| CAATGAAATCAAGCTTCCAC+AGG | + | chr7.2:42969330-42969349 | MS.gene46040:intron | 40.0% | |
| CAGCAAAGACAAACAAATGG+AGG | + | chr7.2:42968271-42968290 | MS.gene46040:CDS | 40.0% | |
| CTGAAAGGCTGAACACAATA+AGG | + | chr7.2:42968215-42968234 | MS.gene46040:CDS | 40.0% | |
| GAAGCAGCAAGAGAATCAAT+TGG | - | chr7.2:42967574-42967593 | None:intergenic | 40.0% | |
| GCAAAAAAGCTCAAATCAGC+AGG | - | chr7.2:42968045-42968064 | None:intergenic | 40.0% | |
| GCATTCTCACAAACACCATT+AGG | - | chr7.2:42967895-42967914 | None:intergenic | 40.0% | |
| GGAGGAAGAAATGTTGTTGA+TGG | + | chr7.2:42968289-42968308 | MS.gene46040:CDS | 40.0% | |
| GGCAACAACAAATTGCTGAA+AGG | + | chr7.2:42968200-42968219 | MS.gene46040:CDS | 40.0% | |
| GGGGAAGAAGAATTTCTTTG+AGG | - | chr7.2:42967997-42968016 | None:intergenic | 40.0% | |
| GTTATGATTCTCAGAGGCTT+TGG | - | chr7.2:42967680-42967699 | None:intergenic | 40.0% | |
| TAGGTTTGTCATCATCTGCA+TGG | + | chr7.2:42968341-42968360 | MS.gene46040:CDS | 40.0% | |
| TCAGAACAAGCGAATCCATA+AGG | - | chr7.2:42967541-42967560 | None:intergenic | 40.0% | |
| TGCTACCATAACCATTTCCA+AGG | - | chr7.2:42968432-42968451 | None:intergenic | 40.0% | |
| TGTTGAGCATGTTGTAGTGT+TGG | - | chr7.2:42968367-42968386 | None:intergenic | 40.0% | |
| TTGAAAAGCGAAAGCGAAGA+AGG | - | chr7.2:42967493-42967512 | None:intergenic | 40.0% | |
| TTTCTTGATTCAACAGGACG+AGG | - | chr7.2:42968478-42968497 | None:intergenic | 40.0% | |
| ! | AAACGATGCAAGTGTTGTTG+CGG | - | chr7.2:42969000-42969019 | None:intergenic | 40.0% |
| ! | AAAGCACATAGGGTTGATTG+TGG | - | chr7.2:42967826-42967845 | None:intergenic | 40.0% |
| ! | CAATCAACCCTATGTGCTTT+TGG | + | chr7.2:42967826-42967845 | MS.gene46040:CDS | 40.0% |
| ! | TTTGGAATCAACATGGAGAG+AGG | - | chr7.2:42967662-42967681 | None:intergenic | 40.0% |
| !! | AACAACAACGTTGCTGGTTT+AGG | + | chr7.2:42968322-42968341 | MS.gene46040:CDS | 40.0% |
| !! | AGAGCTGTTTTCCTTGGAAA+TGG | + | chr7.2:42968418-42968437 | MS.gene46040:CDS | 40.0% |
| !! | CAAATCAGCAGGGTTGTTTT+TGG | - | chr7.2:42968034-42968053 | None:intergenic | 40.0% |
| !! | TACATGAGAGCTGTTTTCCT+TGG | + | chr7.2:42968412-42968431 | MS.gene46040:CDS | 40.0% |
| !! | TCGCTTTCGCTTTTCAACAA+TGG | + | chr7.2:42967496-42967515 | MS.gene46040:CDS | 40.0% |
| !!! | GATCCTCTGCTTTTTCCTTA+TGG | + | chr7.2:42967523-42967542 | MS.gene46040:CDS | 40.0% |
| !!! | GATTTGGGGGAGTATTTTAG+GGG | + | chr7.2:42969425-42969444 | MS.gene46040:CDS | 40.0% |
| !!! | GGATTTGGGGGAGTATTTTA+GGG | + | chr7.2:42969424-42969443 | MS.gene46040:CDS | 40.0% |
| !!! | GTTGGTGATTTTAGTTGCAG+AGG | + | chr7.2:42968173-42968192 | MS.gene46040:intron | 40.0% |
| !!! | TTTATTGTCGTTTTGCAGGG+AGG | + | chr7.2:42967796-42967815 | MS.gene46040:intron | 40.0% |
| AAACACCATTAGGGCTTCCT+TGG | - | chr7.2:42967885-42967904 | None:intergenic | 45.0% | |
| AAATCAAGCTTCCACAGGAG+TGG | + | chr7.2:42969335-42969354 | MS.gene46040:intron | 45.0% | |
| AAGGCTGAACACAATAAGGG+CGG | + | chr7.2:42968219-42968238 | MS.gene46040:CDS | 45.0% | |
| AATGACTCCAAATGCCGCAA+AGG | + | chr7.2:42967850-42967869 | MS.gene46040:CDS | 45.0% | |
| AGCGAAAGCGAAGAAGGTTT+CGG | - | chr7.2:42967487-42967506 | None:intergenic | 45.0% | |
| ATGGCTGAGAATTTGGACGA+CGG | + | chr7.2:42967397-42967416 | MS.gene46040:CDS | 45.0% | |
| ATTTCATTGCTCACTGCTGC+TGG | - | chr7.2:42969319-42969338 | None:intergenic | 45.0% | |
| CGGGTATGCAGAAGCAAAAT+GGG | + | chr7.2:42968239-42968258 | MS.gene46040:CDS | 45.0% | |
| GGGTATGCAGAAGCAAAATG+GGG | + | chr7.2:42968240-42968259 | MS.gene46040:CDS | 45.0% | |
| GGTATGCAGAAGCAAAATGG+GGG | + | chr7.2:42968241-42968260 | MS.gene46040:CDS | 45.0% | |
| TGATGAACCTTTGCGGCATT+TGG | - | chr7.2:42967860-42967879 | None:intergenic | 45.0% | |
| TTATTACCCCTATGCCTTGG+AGG | - | chr7.2:42969247-42969266 | None:intergenic | 45.0% | |
| ! | CGAAGAAGGTTTCGGTTTTG+TGG | - | chr7.2:42967479-42967498 | None:intergenic | 45.0% |
| ! | CTTGGCTTGATGAACCTTTG+CGG | - | chr7.2:42967867-42967886 | None:intergenic | 45.0% |
| ! | TGTAGCTTGTGCAACTGCAT+TGG | + | chr7.2:42968912-42968931 | MS.gene46040:intron | 45.0% |
| !! | AGAAGGTTTCGGTTTTGTGG+TGG | - | chr7.2:42967476-42967495 | None:intergenic | 45.0% |
| !! | CAGAGGCTTTGGAATCAACA+TGG | - | chr7.2:42967669-42967688 | None:intergenic | 45.0% |
| !!! | GGGATTTGGGGGAGTATTTT+AGG | + | chr7.2:42969423-42969442 | MS.gene46040:CDS | 45.0% |
| !!! | TCAGCAGGGTTGTTTTTGGA+TGG | - | chr7.2:42968030-42968049 | None:intergenic | 45.0% |
| !!! | AAATTTCATATTTTTAATAA+TGG | + | chr7.2:42968123-42968142 | MS.gene46040:intron | 5.0% |
| !!! | AATTTCATATTTTTAATAAT+GGG | + | chr7.2:42968124-42968143 | MS.gene46040:intron | 5.0% |
| !!! | TTTTTATTAATTAATTTTGT+TGG | + | chr7.2:42968155-42968174 | MS.gene46040:intron | 5.0% |
| ACAGCTCTCATGTAGGGTTG+TGG | - | chr7.2:42968406-42968425 | None:intergenic | 50.0% | |
| AGGCTGAACACAATAAGGGC+GGG | + | chr7.2:42968220-42968239 | MS.gene46040:CDS | 50.0% | |
| ATTTGGACGACGGTGAGTTC+TGG | + | chr7.2:42967407-42967426 | MS.gene46040:CDS | 50.0% | |
| CGCAAAGGTTCATCAAGCCA+AGG | + | chr7.2:42967865-42967884 | MS.gene46040:CDS | 50.0% | |
| GCGGGTATGCAGAAGCAAAA+TGG | + | chr7.2:42968238-42968257 | MS.gene46040:CDS | 50.0% | |
| TCAAGCCAAGGAAGCCCTAA+TGG | + | chr7.2:42967877-42967896 | MS.gene46040:CDS | 50.0% | |
| TGTTGCACCTCCAAGGCATA+GGG | + | chr7.2:42969237-42969256 | MS.gene46040:intron | 50.0% | |
| !! | TATGGTAGCAGTACTGGCAC+TGG | + | chr7.2:42968442-42968461 | MS.gene46040:CDS | 50.0% |
| !! | TGCATTGGTTCCAGCTAGAG+TGG | + | chr7.2:42968927-42968946 | MS.gene46040:CDS | 50.0% |
| CAGTTTCTCTCCGACGACGA+CGG | + | chr7.2:42967439-42967458 | MS.gene46040:CDS | 55.0% | |
| CATCAGTACGTCCACTCCTG+TGG | - | chr7.2:42969349-42969368 | None:intergenic | 55.0% | |
| CTGTTGCACCTCCAAGGCAT+AGG | + | chr7.2:42969236-42969255 | MS.gene46040:intron | 55.0% | |
| GCAGCAGCAACAATACCAGC+AGG | + | chr7.2:42969287-42969306 | MS.gene46040:intron | 55.0% | |
| GTTGCACCTCCAAGGCATAG+GGG | + | chr7.2:42969238-42969257 | MS.gene46040:intron | 55.0% | |
| TAGCTGCTGTTGCACCTCCA+AGG | + | chr7.2:42969230-42969249 | MS.gene46040:intron | 55.0% | |
| TCGTCGTCGGAGAGAAACTG+CGG | - | chr7.2:42967439-42967458 | None:intergenic | 55.0% | |
| ! | GATGCAAGTGTTGTTGCGGC+TGG | - | chr7.2:42968996-42969015 | None:intergenic | 55.0% |
| TCGTCGGAGAGAAACTGCGG+CGG | - | chr7.2:42967436-42967455 | None:intergenic | 60.0% | |
| TGTGTCGTCACCGTCGTCGT+CGG | - | chr7.2:42967452-42967471 | None:intergenic | 60.0% | |
| ! | TTGCTCACTGCTGCTGGCTG+AGG | - | chr7.2:42969313-42969332 | None:intergenic | 60.0% |
| AGGGCATGCGCCACTCTAGC+TGG | - | chr7.2:42968940-42968959 | None:intergenic | 65.0% | |
| ! | TGCTGCTGGCTGAGGCCTGC+TGG | - | chr7.2:42969305-42969324 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 42967397 | 42969472 | 42967397 | ID=MS.gene46040 |
| chr7.2 | mRNA | 42967397 | 42969472 | 42967397 | ID=MS.gene46040.t1;Parent=MS.gene46040 |
| chr7.2 | exon | 42967397 | 42967711 | 42967397 | ID=MS.gene46040.t1.exon1;Parent=MS.gene46040.t1 |
| chr7.2 | CDS | 42967397 | 42967711 | 42967397 | ID=cds.MS.gene46040.t1;Parent=MS.gene46040.t1 |
| chr7.2 | exon | 42967814 | 42968104 | 42967814 | ID=MS.gene46040.t1.exon2;Parent=MS.gene46040.t1 |
| chr7.2 | CDS | 42967814 | 42968104 | 42967814 | ID=cds.MS.gene46040.t1;Parent=MS.gene46040.t1 |
| chr7.2 | exon | 42968187 | 42968514 | 42968187 | ID=MS.gene46040.t1.exon3;Parent=MS.gene46040.t1 |
| chr7.2 | CDS | 42968187 | 42968514 | 42968187 | ID=cds.MS.gene46040.t1;Parent=MS.gene46040.t1 |
| chr7.2 | exon | 42968917 | 42968989 | 42968917 | ID=MS.gene46040.t1.exon4;Parent=MS.gene46040.t1 |
| chr7.2 | CDS | 42968917 | 42968989 | 42968917 | ID=cds.MS.gene46040.t1;Parent=MS.gene46040.t1 |
| chr7.2 | exon | 42969352 | 42969472 | 42969352 | ID=MS.gene46040.t1.exon5;Parent=MS.gene46040.t1 |
| chr7.2 | CDS | 42969352 | 42969472 | 42969352 | ID=cds.MS.gene46040.t1;Parent=MS.gene46040.t1 |
| Gene Sequence |
| Protein sequence |
