Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49352.t1 | XP_003590533.2 | 97.6 | 291 | 7 | 0 | 1 | 291 | 39 | 329 | 6.60E-166 | 593.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49352.t1 | Q9SX99 | 33.3 | 243 | 149 | 5 | 39 | 277 | 20 | 253 | 2.7e-27 | 124.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49352.t1 | G7ICM6 | 97.6 | 291 | 7 | 0 | 1 | 291 | 1 | 291 | 4.7e-166 | 593.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene49352 | 0.830006 | 3.74E-55 | -1.69E-46 |
| MS.gene049171 | MS.gene49352 | 0.800515 | 1.39E-48 | -1.69E-46 |
| MS.gene049217 | MS.gene49352 | 0.837191 | 6.01E-57 | -1.69E-46 |
| MS.gene049222 | MS.gene49352 | 0.826529 | 2.58E-54 | -1.69E-46 |
| MS.gene049285 | MS.gene49352 | 0.809105 | 2.23E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene49352 | 0.803661 | 3.13E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene49352 | 0.844381 | 7.83E-59 | -1.69E-46 |
| MS.gene050165 | MS.gene49352 | 0.833525 | 5.07E-56 | -1.69E-46 |
| MS.gene050333 | MS.gene49352 | 0.81969 | 1.02E-52 | -1.69E-46 |
| MS.gene050444 | MS.gene49352 | 0.80744 | 5.05E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene49352 | 0.805039 | 1.62E-49 | -1.69E-46 |
| MS.gene050507 | MS.gene49352 | 0.811321 | 7.42E-51 | -1.69E-46 |
| MS.gene050518 | MS.gene49352 | 0.810958 | 8.90E-51 | -1.69E-46 |
| MS.gene050675 | MS.gene49352 | 0.806521 | 7.90E-50 | -1.69E-46 |
| MS.gene050699 | MS.gene49352 | 0.806981 | 6.32E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene49352 | 0.800377 | 1.48E-48 | -1.69E-46 |
| MS.gene050781 | MS.gene49352 | 0.802306 | 5.97E-49 | -1.69E-46 |
| MS.gene050812 | MS.gene49352 | 0.815488 | 9.01E-52 | -1.69E-46 |
| MS.gene050904 | MS.gene49352 | 0.826512 | 2.60E-54 | -1.69E-46 |
| MS.gene051666 | MS.gene49352 | 0.831224 | 1.88E-55 | -1.69E-46 |
| MS.gene051694 | MS.gene49352 | 0.812865 | 3.42E-51 | -1.69E-46 |
| MS.gene052271 | MS.gene49352 | 0.803434 | 3.49E-49 | -1.69E-46 |
| MS.gene053107 | MS.gene49352 | 0.813814 | 2.12E-51 | -1.69E-46 |
| MS.gene053207 | MS.gene49352 | 0.805526 | 1.28E-49 | -1.69E-46 |
| MS.gene053284 | MS.gene49352 | 0.804128 | 2.51E-49 | -1.69E-46 |
| MS.gene053285 | MS.gene49352 | 0.813386 | 2.63E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene49352 | 0.832521 | 9.01E-56 | -1.69E-46 |
| MS.gene054600 | MS.gene49352 | 0.810409 | 1.17E-50 | -1.69E-46 |
| MS.gene054802 | MS.gene49352 | 0.814171 | 1.77E-51 | -1.69E-46 |
| MS.gene054803 | MS.gene49352 | 0.815254 | 1.02E-51 | -1.69E-46 |
| MS.gene054804 | MS.gene49352 | 0.81626 | 6.06E-52 | -1.69E-46 |
| MS.gene055397 | MS.gene49352 | 0.812259 | 4.64E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene49352 | 0.803156 | 3.99E-49 | -1.69E-46 |
| MS.gene055577 | MS.gene49352 | 0.82959 | 4.73E-55 | -1.69E-46 |
| MS.gene055748 | MS.gene49352 | 0.816731 | 4.75E-52 | -1.69E-46 |
| MS.gene055751 | MS.gene49352 | 0.808574 | 2.90E-50 | -1.69E-46 |
| MS.gene055941 | MS.gene49352 | 0.839047 | 2.00E-57 | -1.69E-46 |
| MS.gene056409 | MS.gene49352 | 0.805508 | 1.29E-49 | -1.69E-46 |
| MS.gene056449 | MS.gene49352 | 0.816241 | 6.12E-52 | -1.69E-46 |
| MS.gene056692 | MS.gene49352 | 0.810447 | 1.15E-50 | -1.69E-46 |
| MS.gene056903 | MS.gene49352 | 0.811607 | 6.43E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene49352 | 0.820155 | 7.96E-53 | -1.69E-46 |
| MS.gene057416 | MS.gene49352 | 0.80452 | 2.08E-49 | -1.69E-46 |
| MS.gene057831 | MS.gene49352 | 0.824355 | 8.44E-54 | -1.69E-46 |
| MS.gene058019 | MS.gene49352 | 0.80595 | 1.04E-49 | -1.69E-46 |
| MS.gene058293 | MS.gene49352 | 0.80245 | 5.58E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene49352 | 0.803881 | 2.82E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene49352 | 0.804799 | 1.82E-49 | -1.69E-46 |
| MS.gene058993 | MS.gene49352 | 0.820343 | 7.21E-53 | -1.69E-46 |
| MS.gene059023 | MS.gene49352 | 0.828861 | 7.10E-55 | -1.69E-46 |
| MS.gene059079 | MS.gene49352 | 0.800071 | 1.71E-48 | -1.69E-46 |
| MS.gene05934 | MS.gene49352 | 0.826942 | 2.06E-54 | -1.69E-46 |
| MS.gene059677 | MS.gene49352 | 0.817165 | 3.80E-52 | -1.69E-46 |
| MS.gene059718 | MS.gene49352 | 0.803536 | 3.33E-49 | -1.69E-46 |
| MS.gene059756 | MS.gene49352 | 0.812497 | 4.12E-51 | -1.69E-46 |
| MS.gene059960 | MS.gene49352 | 0.832446 | 9.41E-56 | -1.69E-46 |
| MS.gene060193 | MS.gene49352 | 0.832938 | 7.10E-56 | -1.69E-46 |
| MS.gene060762 | MS.gene49352 | 0.807331 | 5.33E-50 | -1.69E-46 |
| MS.gene06092 | MS.gene49352 | 0.831108 | 2.01E-55 | -1.69E-46 |
| MS.gene061150 | MS.gene49352 | 0.848892 | 4.59E-60 | -1.69E-46 |
| MS.gene061200 | MS.gene49352 | 0.840563 | 8.07E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49352.t1 | MTR_1g070840 | 97.595 | 291 | 7 | 0 | 1 | 291 | 1 | 291 | 0.0 | 595 |
| MS.gene49352.t1 | MTR_1g021080 | 37.868 | 272 | 144 | 10 | 14 | 278 | 8 | 261 | 1.73e-46 | 157 |
| MS.gene49352.t1 | MTR_6g092780 | 62.500 | 48 | 16 | 1 | 210 | 257 | 422 | 467 | 8.65e-14 | 71.6 |
| MS.gene49352.t1 | MTR_6g092780 | 44.118 | 68 | 36 | 1 | 210 | 277 | 351 | 416 | 2.21e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49352.t1 | AT1G47720 | 33.784 | 222 | 136 | 4 | 60 | 277 | 39 | 253 | 3.72e-32 | 120 |
| MS.gene49352.t1 | AT4G20010 | 34.222 | 225 | 129 | 6 | 54 | 266 | 76 | 293 | 1.12e-27 | 110 |
| MS.gene49352.t1 | AT4G20010 | 57.692 | 52 | 20 | 1 | 210 | 261 | 310 | 359 | 2.52e-12 | 67.0 |
| MS.gene49352.t1 | AT4G20010 | 35.398 | 226 | 125 | 8 | 54 | 266 | 76 | 293 | 1.60e-27 | 110 |
| MS.gene49352.t1 | AT4G20010 | 57.692 | 52 | 20 | 1 | 210 | 261 | 310 | 359 | 2.50e-12 | 67.0 |
| MS.gene49352.t1 | AT5G44785 | 33.971 | 209 | 121 | 6 | 66 | 264 | 71 | 272 | 1.76e-22 | 97.1 |
| MS.gene49352.t1 | AT5G44785 | 58.182 | 55 | 21 | 1 | 210 | 264 | 380 | 432 | 6.98e-14 | 72.0 |
| MS.gene49352.t1 | AT5G44785 | 33.971 | 209 | 121 | 6 | 66 | 264 | 71 | 272 | 1.92e-22 | 96.7 |
| MS.gene49352.t1 | AT5G44785 | 58.182 | 55 | 21 | 1 | 210 | 264 | 378 | 430 | 7.63e-14 | 71.6 |
| MS.gene49352.t1 | AT1G31010 | 26.141 | 241 | 144 | 6 | 60 | 274 | 56 | 288 | 5.68e-18 | 83.2 |
Find 86 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGGATTCATTTGACATTT+TGG | 0.051547 | 1.1:-53212005 | MS.gene49352:CDS |
| TTGAATTTGGGGATGAAATT+AGG | 0.122392 | 1.1:+53212279 | None:intergenic |
| GGAAAATGGGAGTTTGAATT+TGG | 0.165018 | 1.1:+53212266 | None:intergenic |
| TCCTTGTTCCATGAAATTTC+AGG | 0.224276 | 1.1:+53212150 | None:intergenic |
| GGTCATCAGATTCATGTTTC+TGG | 0.230684 | 1.1:-53211943 | MS.gene49352:CDS |
| TGCTTAAAATCAGGAGCTTT+GGG | 0.240351 | 1.1:+53207711 | None:intergenic |
| GAAGAGAGTGTTGTGGAAAA+TGG | 0.274002 | 1.1:+53212252 | None:intergenic |
| TGGGGATGAAATTAGGGTTT+TGG | 0.282218 | 1.1:+53212286 | None:intergenic |
| TGAATTTGGGGATGAAATTA+GGG | 0.312987 | 1.1:+53212280 | None:intergenic |
| GATACTGTTGATTCTCTTGA+TGG | 0.323867 | 1.1:-53211907 | MS.gene49352:CDS |
| AAATCAAACACCTTCCTTCC+GGG | 0.332223 | 1.1:-53212080 | MS.gene49352:CDS |
| GAAATCAAACACCTTCCTTC+CGG | 0.332250 | 1.1:-53212081 | MS.gene49352:CDS |
| GAAAATGGGAGTTTGAATTT+GGG | 0.332653 | 1.1:+53212267 | None:intergenic |
| GTGCTTAAAATCAGGAGCTT+TGG | 0.338408 | 1.1:+53207710 | None:intergenic |
| GTATGATGCTGCTCCATTAT+TGG | 0.343435 | 1.1:+53212182 | None:intergenic |
| GGAAGGTGTTTGATTTCAAC+TGG | 0.349211 | 1.1:+53212087 | None:intergenic |
| CAAACAACAAACTTACTATA+AGG | 0.360042 | 1.1:-53211884 | MS.gene49352:intron |
| CTTCCGGGAAAGTTGTTGCT+TGG | 0.369233 | 1.1:-53212065 | MS.gene49352:CDS |
| CTATTGTCCCACCACTCCCC+TGG | 0.369869 | 1.1:+53211221 | None:intergenic |
| TCCAATTCCATCACCAATAA+TGG | 0.379397 | 1.1:-53212195 | MS.gene49352:CDS |
| TCATGTCTAATATTTCCAAT+TGG | 0.379808 | 1.1:+53207628 | None:intergenic |
| CAGGGGAGTGGTGGGACAAT+AGG | 0.384072 | 1.1:-53211220 | MS.gene49352:CDS |
| TCCATTATTGGTGATGGAAT+TGG | 0.384641 | 1.1:+53212194 | None:intergenic |
| GGGTCTTATACCGGTCAAAA+TGG | 0.387486 | 1.1:-53207600 | MS.gene49352:CDS |
| CATGTCTAATATTTCCAATT+GGG | 0.388324 | 1.1:+53207629 | None:intergenic |
| TGGTAGGATGCCCGTAGATA+TGG | 0.414708 | 1.1:-53207580 | MS.gene49352:CDS |
| AGTCCAAGCAACAACTTTCC+CGG | 0.430883 | 1.1:+53212062 | None:intergenic |
| AGCAGCTGAATTTCATTGAT+AGG | 0.434295 | 1.1:-53211761 | MS.gene49352:CDS |
| CCTTGTTCCATGAAATTTCA+GGG | 0.435573 | 1.1:+53212151 | None:intergenic |
| GGAGAAGCTCTGTGGATTGA+TGG | 0.439305 | 1.1:-53207678 | MS.gene49352:CDS |
| GAAATTTCTGTGGATTGGTT+TGG | 0.442612 | 1.1:+53212230 | None:intergenic |
| AAGTTGAAATTTCTGTGGAT+TGG | 0.456639 | 1.1:+53212225 | None:intergenic |
| TTGCCAACCCAGGGGAGTGG+TGG | 0.459728 | 1.1:-53211229 | MS.gene49352:CDS |
| CTGGTTCTGTGGTGGAATTA+TGG | 0.460092 | 1.1:-53211262 | MS.gene49352:CDS |
| GTATCCTTGTGCTTAAAATC+AGG | 0.463490 | 1.1:+53207702 | None:intergenic |
| ACCATGGGTCAAATCCCAAT+TGG | 0.471295 | 1.1:-53207643 | MS.gene49352:CDS |
| CAAGCTTTCTTTGCCAACCC+AGG | 0.471812 | 1.1:-53211239 | MS.gene49352:CDS |
| TCTTTGCCAACCCAGGGGAG+TGG | 0.478438 | 1.1:-53211232 | MS.gene49352:CDS |
| TATTGTCCCACCACTCCCCT+GGG | 0.482045 | 1.1:+53211222 | None:intergenic |
| ATCTGCGCTCACCATATCTA+CGG | 0.486147 | 1.1:+53207569 | None:intergenic |
| AAGAGAGTGTTGTGGAAAAT+GGG | 0.490916 | 1.1:+53212253 | None:intergenic |
| TCCAATTGGGATTTGACCCA+TGG | 0.496465 | 1.1:+53207642 | None:intergenic |
| GGAAATATTAGACATGAGGA+TGG | 0.508703 | 1.1:-53207622 | MS.gene49352:CDS |
| TGTTATTATTTCAGGCAAGA+AGG | 0.513408 | 1.1:-53211309 | MS.gene49352:intron |
| AAGCTTTCTTTGCCAACCCA+GGG | 0.515795 | 1.1:-53211238 | MS.gene49352:CDS |
| GACGAAGCCGATCAAATTGA+CGG | 0.517774 | 1.1:+53212116 | None:intergenic |
| ATGAGGATGGGGTCTTATAC+CGG | 0.520447 | 1.1:-53207609 | MS.gene49352:CDS |
| AGCAACTCCGTCAATTTGAT+CGG | 0.521897 | 1.1:-53212123 | MS.gene49352:CDS |
| ATCAGATTCATGTTTCTGGT+CGG | 0.524990 | 1.1:-53211939 | MS.gene49352:CDS |
| GGGAGTGGTGGGACAATAGG+AGG | 0.525627 | 1.1:-53211217 | MS.gene49352:CDS |
| GTCCCACCACTCCCCTGGGT+TGG | 0.526435 | 1.1:+53211226 | None:intergenic |
| AAGGCGAGTTATGCTTCAAA+TGG | 0.528529 | 1.1:-53211290 | MS.gene49352:CDS |
| TATGCTTCAAATGGTACGAC+TGG | 0.538035 | 1.1:-53211281 | MS.gene49352:CDS |
| TGCTGCTCCATTATTGGTGA+TGG | 0.540830 | 1.1:+53212188 | None:intergenic |
| GAAATATTAGACATGAGGAT+GGG | 0.541115 | 1.1:-53207621 | MS.gene49352:CDS |
| GCTTCTCAACATGTTCAGAA+AGG | 0.542292 | 1.1:-53211964 | MS.gene49352:CDS |
| CTTATACCGGTCAAAATGGT+AGG | 0.543946 | 1.1:-53207596 | MS.gene49352:CDS |
| CATTGATAGGAGTGACGCGC+CGG | 0.549062 | 1.1:-53211748 | MS.gene49352:CDS |
| TGCCAACCCAGGGGAGTGGT+GGG | 0.556445 | 1.1:-53211228 | MS.gene49352:CDS |
| CCCTGAAATTTCATGGAACA+AGG | 0.559947 | 1.1:-53212151 | MS.gene49352:CDS |
| CAACAACTTTCCCGGAAGGA+AGG | 0.564641 | 1.1:+53212070 | None:intergenic |
| CTTGTTCCATGAAATTTCAG+GGG | 0.564810 | 1.1:+53212152 | None:intergenic |
| TGGTAGATCCACTCCACCAT+GGG | 0.571714 | 1.1:-53207658 | MS.gene49352:CDS |
| AAAATGGGAGTTTGAATTTG+GGG | 0.572671 | 1.1:+53212268 | None:intergenic |
| TCTGCGCTCACCATATCTAC+GGG | 0.572725 | 1.1:+53207570 | None:intergenic |
| TTGTTCCATGAAATTTCAGG+GGG | 0.591210 | 1.1:+53212153 | None:intergenic |
| AATTGGGATTTGACCCATGG+TGG | 0.594769 | 1.1:+53207645 | None:intergenic |
| GCTTAAAATCAGGAGCTTTG+GGG | 0.595796 | 1.1:+53207712 | None:intergenic |
| AAAATGCTTCGCAAATGTCG+TGG | 0.602676 | 1.1:-53212023 | MS.gene49352:CDS |
| TCTTGATCATGTGACCGCAC+CGG | 0.610253 | 1.1:+53211729 | None:intergenic |
| GGATTTGACCCATGGTGGAG+TGG | 0.613322 | 1.1:+53207650 | None:intergenic |
| ACTTCAAGTTGAAATTTCTG+TGG | 0.615724 | 1.1:+53212220 | None:intergenic |
| AAATATTAGACATGAGGATG+GGG | 0.615794 | 1.1:-53207620 | MS.gene49352:CDS |
| TCAAATTGACGGAGTTGCTG+AGG | 0.622457 | 1.1:+53212127 | None:intergenic |
| TGGTTTGGAAGAGAGTGTTG+TGG | 0.623476 | 1.1:+53212245 | None:intergenic |
| AAATGGTACGACTGGTTCTG+TGG | 0.623810 | 1.1:-53211273 | MS.gene49352:CDS |
| AATTGGAAATATTAGACATG+AGG | 0.636139 | 1.1:-53207626 | MS.gene49352:CDS |
| CAAGCAACAACTTTCCCGGA+AGG | 0.636873 | 1.1:+53212066 | None:intergenic |
| ATGGTAGATCCACTCCACCA+TGG | 0.638276 | 1.1:-53207659 | MS.gene49352:CDS |
| TTCATTATGTCTGATGACAA+TGG | 0.656636 | 1.1:-53211699 | MS.gene49352:intron |
| GAAGGTGTTTGATTTCAACT+GGG | 0.658033 | 1.1:+53212088 | None:intergenic |
| AGCTTTCTTTGCCAACCCAG+GGG | 0.662573 | 1.1:-53211237 | MS.gene49352:CDS |
| AGGATACTGGAGAAGCTCTG+TGG | 0.677895 | 1.1:-53207686 | MS.gene49352:CDS |
| ATAGGAGTGACGCGCCGGTG+CGG | 0.681821 | 1.1:-53211743 | MS.gene49352:CDS |
| TGGTACGACTGGTTCTGTGG+TGG | 0.688675 | 1.1:-53211270 | MS.gene49352:CDS |
| GTGGGACAATAGGAGGAACA+AGG | 0.691913 | 1.1:-53211210 | MS.gene49352:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTAAATTGAATAATAAAA+TGG | - | chr1.1:53209525-53209544 | MS.gene49352:intron | 10.0% |
| !! | ACTAAATTGAATAATAAAAT+GGG | - | chr1.1:53209526-53209545 | MS.gene49352:intron | 10.0% |
| !! | ATATGAAAAAAAATAATTTG+AGG | + | chr1.1:53208976-53208995 | None:intergenic | 10.0% |
| !! | TATGAAAAAAAATAATTTGA+GGG | + | chr1.1:53208975-53208994 | None:intergenic | 10.0% |
| !! | TATTAAAACTTATAATTAGA+TGG | - | chr1.1:53211647-53211666 | MS.gene49352:intron | 10.0% |
| !!! | AAGTTTTTATTTTAAAAACT+TGG | - | chr1.1:53210866-53210885 | MS.gene49352:intron | 10.0% |
| !!! | AGTTTTTATTTTAAAAACTT+GGG | - | chr1.1:53210867-53210886 | MS.gene49352:intron | 10.0% |
| !!! | CAATTTTTTATAAAATGAAA+TGG | + | chr1.1:53212109-53212128 | None:intergenic | 10.0% |
| !!! | TCATTAATTCTTTAAAAAAA+TGG | + | chr1.1:53209566-53209585 | None:intergenic | 10.0% |
| !!! | TTTTATTTATATAATGATCT+GGG | + | chr1.1:53210548-53210567 | None:intergenic | 10.0% |
| !!! | TTTTTATTTATATAATGATC+TGG | + | chr1.1:53210549-53210568 | None:intergenic | 10.0% |
| !! | AAGAGATATTAAAATAATCT+TGG | + | chr1.1:53210230-53210249 | None:intergenic | 15.0% |
| !! | ACAATATTCAATTTACATAT+TGG | + | chr1.1:53209775-53209794 | None:intergenic | 15.0% |
| !! | AGAAAGATACAATAAATAAA+TGG | - | chr1.1:53211214-53211233 | MS.gene49352:CDS | 15.0% |
| !! | TTTAAATAACTTATCCATTA+AGG | - | chr1.1:53210016-53210035 | MS.gene49352:intron | 15.0% |
| !!! | GAATAATTATAAGTTTTTAG+GGG | + | chr1.1:53211597-53211616 | None:intergenic | 15.0% |
| !!! | GGAATAATTATAAGTTTTTA+GGG | + | chr1.1:53211598-53211617 | None:intergenic | 15.0% |
| !!! | GTTTTTATTTTAAAAACTTG+GGG | - | chr1.1:53210868-53210887 | MS.gene49352:intron | 15.0% |
| !!! | TAATTTTTGCTTTGTTTTTT+TGG | - | chr1.1:53208042-53208061 | MS.gene49352:intron | 15.0% |
| !!! | TATCAATATGTTGATTTTTT+TGG | - | chr1.1:53209182-53209201 | MS.gene49352:intron | 15.0% |
| !!! | TGGAATAATTATAAGTTTTT+AGG | + | chr1.1:53210210-53210229 | None:intergenic | 15.0% |
| !!! | TTATATATTAAGTGTACTTT+TGG | - | chr1.1:53208227-53208246 | MS.gene49352:intron | 15.0% |
| !!! | TTTTTTATAAAATGAAATGG+AGG | + | chr1.1:53212106-53212125 | None:intergenic | 15.0% |
| !! | AAAAAAAATAATTTGAGGGT+TGG | + | chr1.1:53208971-53208990 | None:intergenic | 20.0% |
| !! | AAGAGATATTAAAACAGTAT+TGG | + | chr1.1:53211619-53211638 | None:intergenic | 20.0% |
| !! | AAGTTGAATTAAATGTAAAG+TGG | - | chr1.1:53208295-53208314 | MS.gene49352:intron | 20.0% |
| !! | AGAAAAAGATCAAAGTTATA+TGG | + | chr1.1:53208571-53208590 | None:intergenic | 20.0% |
| !! | AGTTGAATTAAATGTAAAGT+GGG | - | chr1.1:53208296-53208315 | MS.gene49352:intron | 20.0% |
| !! | TATCTTCAAATTATCAATTC+TGG | - | chr1.1:53208402-53208421 | MS.gene49352:intron | 20.0% |
| !! | TATTACACTAATGAATTCTA+TGG | - | chr1.1:53209252-53209271 | MS.gene49352:intron | 20.0% |
| !! | TCATTAGTGTAATAACAAAA+CGG | + | chr1.1:53209246-53209265 | None:intergenic | 20.0% |
| !! | TGCAAAAAAATAAAATTAGG+AGG | + | chr1.1:53209032-53209051 | None:intergenic | 20.0% |
| !! | TGGTGCAAAAAAATAAAATT+AGG | + | chr1.1:53209035-53209054 | None:intergenic | 20.0% |
| !! | TTCAAAATGCAAAAACAATA+GGG | + | chr1.1:53209009-53209028 | None:intergenic | 20.0% |
| !! | TTTATATAGTCAAAATTGAG+TGG | - | chr1.1:53209220-53209239 | MS.gene49352:intron | 20.0% |
| !!! | AAAAATTTCTTTTCTGAACA+AGG | - | chr1.1:53210357-53210376 | MS.gene49352:intron | 20.0% |
| !!! | AAATTCTGTTCAAATTTTAC+AGG | + | chr1.1:53208496-53208515 | None:intergenic | 20.0% |
| !!! | AATTTTCTCATTAATGCAAA+AGG | + | chr1.1:53211689-53211708 | None:intergenic | 20.0% |
| !!! | AGAATTATCTGAAATTATGA+TGG | - | chr1.1:53211331-53211350 | MS.gene49352:intron | 20.0% |
| !!! | ATTTTCTCATTAATGCAAAA+GGG | + | chr1.1:53211688-53211707 | None:intergenic | 20.0% |
| !!! | CTGAATAGGTTTTTATTTTT+TGG | + | chr1.1:53211720-53211739 | None:intergenic | 20.0% |
| !!! | GAATTGATTTTGACATTATT+TGG | + | chr1.1:53208456-53208475 | None:intergenic | 20.0% |
| !!! | TCTTTTTCTGTTATTATTTC+AGG | - | chr1.1:53208582-53208601 | MS.gene49352:intron | 20.0% |
| !!! | TGATTTTGAATGAATTGATT+CGG | - | chr1.1:53208268-53208287 | MS.gene49352:intron | 20.0% |
| !!! | TTTTATTTTTTAATGGCAGT+TGG | + | chr1.1:53210990-53211009 | None:intergenic | 20.0% |
| ! | AACAAAATCTTATTCATCAG+TGG | + | chr1.1:53212074-53212093 | None:intergenic | 25.0% |
| ! | AATTGGAAATATTAGACATG+AGG | - | chr1.1:53212273-53212292 | MS.gene49352:CDS | 25.0% |
| ! | AATTTATAGTTCTTCACGTT+TGG | - | chr1.1:53210752-53210771 | MS.gene49352:intron | 25.0% |
| ! | AGAATTAACTCCAAATACAA+TGG | + | chr1.1:53208855-53208874 | None:intergenic | 25.0% |
| ! | ATAAAAACCTATTCAGAACA+AGG | - | chr1.1:53211724-53211743 | MS.gene49352:CDS | 25.0% |
| ! | ATCTAACCTATATGCAATTT+GGG | - | chr1.1:53209110-53209129 | MS.gene49352:intron | 25.0% |
| ! | ATCTATTTGAAAAGACCTTA+GGG | - | chr1.1:53211507-53211526 | MS.gene49352:intron | 25.0% |
| ! | CAAACAACAAACTTACTATA+AGG | - | chr1.1:53208015-53208034 | MS.gene49352:intron | 25.0% |
| ! | CATAAGTGGTTTATAGATTT+GGG | + | chr1.1:53211081-53211100 | None:intergenic | 25.0% |
| ! | CATGTCTAATATTTCCAATT+GGG | + | chr1.1:53212273-53212292 | None:intergenic | 25.0% |
| ! | GAAAAGCTTACGATAATAAT+AGG | - | chr1.1:53211384-53211403 | MS.gene49352:intron | 25.0% |
| ! | GTTCAAAATGCAAAAACAAT+AGG | + | chr1.1:53209010-53209029 | None:intergenic | 25.0% |
| ! | TAAAAAAGAAATGGAGGAAA+CGG | + | chr1.1:53210626-53210645 | None:intergenic | 25.0% |
| ! | TATCTAACCTATATGCAATT+TGG | - | chr1.1:53209109-53209128 | MS.gene49352:intron | 25.0% |
| ! | TATCTATTTGAAAAGACCTT+AGG | - | chr1.1:53211506-53211525 | MS.gene49352:intron | 25.0% |
| ! | TATTCATCAGTGGTTATAAA+CGG | + | chr1.1:53212064-53212083 | None:intergenic | 25.0% |
| ! | TCATGTCTAATATTTCCAAT+TGG | + | chr1.1:53212274-53212293 | None:intergenic | 25.0% |
| ! | TTCAGTGCATAAAAAAGAAA+TGG | + | chr1.1:53210635-53210654 | None:intergenic | 25.0% |
| !! | AAAATTTGCTTATCTGAACA+AGG | + | chr1.1:53210070-53210089 | None:intergenic | 25.0% |
| !! | AAATTTGCTTATCTGAACAA+GGG | + | chr1.1:53210069-53210088 | None:intergenic | 25.0% |
| !! | TTTTCTCATTAATGCAAAAG+GGG | + | chr1.1:53211687-53211706 | None:intergenic | 25.0% |
| !!! | ACTGTTTTAATATCTCTTTC+TGG | - | chr1.1:53211621-53211640 | MS.gene49352:intron | 25.0% |
| !!! | TATATGATTTGTTCTGAACA+TGG | + | chr1.1:53211179-53211198 | None:intergenic | 25.0% |
| !!! | TCATTTCTAGAATGGTAAAA+AGG | + | chr1.1:53211033-53211052 | None:intergenic | 25.0% |
| !!! | TGAGTTGAACAATAATTTTG+AGG | - | chr1.1:53208343-53208362 | MS.gene49352:intron | 25.0% |
| !!! | TGATTTTGACATTATTTGGA+TGG | + | chr1.1:53208452-53208471 | None:intergenic | 25.0% |
| !!! | TGATTTTTTTGGATATGCAA+TGG | - | chr1.1:53209193-53209212 | MS.gene49352:intron | 25.0% |
| !!! | TTTTTTATGCACTGAAGTTT+AGG | - | chr1.1:53210639-53210658 | MS.gene49352:intron | 25.0% |
| AAAATGGGAGTTTGAATTTG+GGG | + | chr1.1:53207634-53207653 | None:intergenic | 30.0% | |
| AAAGCACATATCAAAAGTGA+AGG | - | chr1.1:53211829-53211848 | MS.gene49352:intron | 30.0% | |
| AAAGTTCTCATTAATGCAGA+AGG | + | chr1.1:53210318-53210337 | None:intergenic | 30.0% | |
| AAATATTAGACATGAGGATG+GGG | - | chr1.1:53212279-53212298 | MS.gene49352:CDS | 30.0% | |
| AAGTATCAAGAATGTATCGT+AGG | - | chr1.1:53209311-53209330 | MS.gene49352:intron | 30.0% | |
| AAGTTGAAATTTCTGTGGAT+TGG | + | chr1.1:53207677-53207696 | None:intergenic | 30.0% | |
| AATTAACACGAAACTCCATA+GGG | - | chr1.1:53209476-53209495 | MS.gene49352:intron | 30.0% | |
| AATTGAATGACAATGTGTTG+TGG | - | chr1.1:53208093-53208112 | MS.gene49352:intron | 30.0% | |
| AGACATTCGTAAAGTATGTT+TGG | - | chr1.1:53209682-53209701 | MS.gene49352:intron | 30.0% | |
| AGCTTCAATAGAATAGCTAA+CGG | - | chr1.1:53211447-53211466 | MS.gene49352:intron | 30.0% | |
| AGTATCAAGAATGTATCGTA+GGG | - | chr1.1:53209312-53209331 | MS.gene49352:intron | 30.0% | |
| AGTGCATAAAAAAGAAATGG+AGG | + | chr1.1:53210632-53210651 | None:intergenic | 30.0% | |
| ATCCAATATTATCGTTACCT+TGG | - | chr1.1:53211978-53211997 | MS.gene49352:CDS | 30.0% | |
| ATTGTGAAATAGTTGAGATG+CGG | - | chr1.1:53210823-53210842 | MS.gene49352:intron | 30.0% | |
| ATTTGAACAGAATTTACCAG+TGG | - | chr1.1:53208501-53208520 | MS.gene49352:intron | 30.0% | |
| CACAACACAAACATATCATT+AGG | + | chr1.1:53209138-53209157 | None:intergenic | 30.0% | |
| CCAAATCTATAAACCACTTA+TGG | - | chr1.1:53211079-53211098 | MS.gene49352:intron | 30.0% | |
| CCATAAGTGGTTTATAGATT+TGG | + | chr1.1:53211082-53211101 | None:intergenic | 30.0% | |
| CTTCAAATTATCAATTCTGG+AGG | - | chr1.1:53208405-53208424 | MS.gene49352:intron | 30.0% | |
| CTTGCATTATATTTGGTCAA+TGG | - | chr1.1:53211874-53211893 | MS.gene49352:intron | 30.0% | |
| GAAAATGGGAGTTTGAATTT+GGG | + | chr1.1:53207635-53207654 | None:intergenic | 30.0% | |
| GAAATATTAGACATGAGGAT+GGG | - | chr1.1:53212278-53212297 | MS.gene49352:CDS | 30.0% | |
| GAATGAAGAGAAAGTTGTTT+GGG | + | chr1.1:53209070-53209089 | None:intergenic | 30.0% | |
| GATACATTCTTGATACTTAG+TGG | + | chr1.1:53209309-53209328 | None:intergenic | 30.0% | |
| TAATGCAAGCTGCAAAATAT+TGG | + | chr1.1:53211863-53211882 | None:intergenic | 30.0% | |
| TATACCAAGAGATATGTGTT+CGG | - | chr1.1:53209604-53209623 | MS.gene49352:intron | 30.0% | |
| TCAGTGCATGAAAAATGAAA+TGG | + | chr1.1:53209916-53209935 | None:intergenic | 30.0% | |
| TCTAACCTATATGCAATTTG+GGG | - | chr1.1:53209111-53209130 | MS.gene49352:intron | 30.0% | |
| TCTATTTGAAAAGACCTTAG+GGG | - | chr1.1:53211508-53211527 | MS.gene49352:intron | 30.0% | |
| TGAATGAAGAGAAAGTTGTT+TGG | + | chr1.1:53209071-53209090 | None:intergenic | 30.0% | |
| TGAATTTGGGGATGAAATTA+GGG | + | chr1.1:53207622-53207641 | None:intergenic | 30.0% | |
| TGCAATCTTTATCTGATTCT+TGG | - | chr1.1:53209384-53209403 | MS.gene49352:intron | 30.0% | |
| TGTTAACATGCCATTGTATT+TGG | - | chr1.1:53208842-53208861 | MS.gene49352:intron | 30.0% | |
| TGTTATTATTTCAGGCAAGA+AGG | - | chr1.1:53208590-53208609 | MS.gene49352:intron | 30.0% | |
| TTCATTATGTCTGATGACAA+TGG | - | chr1.1:53208200-53208219 | MS.gene49352:intron | 30.0% | |
| TTGAATTTGGGGATGAAATT+AGG | + | chr1.1:53207623-53207642 | None:intergenic | 30.0% | |
| TTGTCAATAAAACTGTGCTT+TGG | - | chr1.1:53211773-53211792 | MS.gene49352:CDS | 30.0% | |
| TTTCTTTATCTGGATCAACA+TGG | - | chr1.1:53212002-53212021 | MS.gene49352:CDS | 30.0% | |
| TTTGCAGCTTGCATTATATT+TGG | - | chr1.1:53211867-53211886 | MS.gene49352:intron | 30.0% | |
| TTTGTTTGTATGATATGTGC+TGG | - | chr1.1:53209428-53209447 | MS.gene49352:intron | 30.0% | |
| ! | AAAAGAACCTTGTTCTGAAT+AGG | + | chr1.1:53211734-53211753 | None:intergenic | 30.0% |
| ! | AATGTAAAGTGGGTATTGTT+TGG | - | chr1.1:53208306-53208325 | MS.gene49352:intron | 30.0% |
| ! | CATTGGGTTTCAAGTATTAT+CGG | - | chr1.1:53211123-53211142 | MS.gene49352:intron | 30.0% |
| ! | CCATTCTAGAAATGATACTT+AGG | - | chr1.1:53211038-53211057 | MS.gene49352:intron | 30.0% |
| ! | CCTAAGTATCATTTCTAGAA+TGG | + | chr1.1:53211041-53211060 | None:intergenic | 30.0% |
| ! | GAAATGATACTTAGGCTTTT+TGG | - | chr1.1:53211046-53211065 | MS.gene49352:intron | 30.0% |
| ! | GGGTGTATATGTTGTTTAAT+AGG | + | chr1.1:53210919-53210938 | None:intergenic | 30.0% |
| ! | GTGGATTCATTTGACATTTT+GGG | - | chr1.1:53207895-53207914 | MS.gene49352:intron | 30.0% |
| ! | GTTAATTAGGTGTTAAGTTG+AGG | - | chr1.1:53211472-53211491 | MS.gene49352:intron | 30.0% |
| ! | TCATAAACTTGCTTCAAACA+AGG | + | chr1.1:53209354-53209373 | None:intergenic | 30.0% |
| ! | TTAGTTCTTTATGTTTGCAG+AGG | - | chr1.1:53210089-53210108 | MS.gene49352:intron | 30.0% |
| ! | TTTAGAACATTAAACCTCGT+AGG | - | chr1.1:53209659-53209678 | MS.gene49352:intron | 30.0% |
| ! | TTTTTCATGCACTGAAGTTT+AGG | - | chr1.1:53209921-53209940 | MS.gene49352:intron | 30.0% |
| !! | ACTTCAAGTTGAAATTTCTG+TGG | + | chr1.1:53207682-53207701 | None:intergenic | 30.0% |
| !! | ATCCATTAAGGATTAGTTTC+TGG | - | chr1.1:53210028-53210047 | MS.gene49352:intron | 30.0% |
| !! | TGTGTTGTGGATTTTTGTTT+AGG | - | chr1.1:53208106-53208125 | MS.gene49352:intron | 30.0% |
| !! | TTGCGAAGCATTTTTCTTAA+CGG | + | chr1.1:53207870-53207889 | None:intergenic | 30.0% |
| !!! | ATTTTTTAATGGCAGTTGGA+TGG | + | chr1.1:53210986-53211005 | None:intergenic | 30.0% |
| !!! | GGTTCTTTTGATTTCATTCT+TGG | - | chr1.1:53211745-53211764 | MS.gene49352:CDS | 30.0% |
| AAAACTGTGCTTTGGTACAT+TGG | - | chr1.1:53211781-53211800 | MS.gene49352:intron | 35.0% | |
| AAGTGGTTTATAGATTTGGG+TGG | + | chr1.1:53211078-53211097 | None:intergenic | 35.0% | |
| AGCAGCTGAATTTCATTGAT+AGG | - | chr1.1:53208138-53208157 | MS.gene49352:intron | 35.0% | |
| AGCCAAGGTAACGATAATAT+TGG | + | chr1.1:53211983-53212002 | None:intergenic | 35.0% | |
| ATACTTGAAACCCAATGCTA+TGG | + | chr1.1:53211120-53211139 | None:intergenic | 35.0% | |
| ATGAAATTTCAGGGGGTTTA+GGG | + | chr1.1:53207742-53207761 | None:intergenic | 35.0% | |
| ATGTAGTATCTACCTTTAGC+TGG | - | chr1.1:53208532-53208551 | MS.gene49352:intron | 35.0% | |
| CAATTAACACGAAACTCCAT+AGG | - | chr1.1:53209475-53209494 | MS.gene49352:intron | 35.0% | |
| CACAATCTTCATAGCAAAAG+AGG | + | chr1.1:53209503-53209522 | None:intergenic | 35.0% | |
| CCAAAGGATGAGATTTATGT+CGG | - | chr1.1:53210699-53210718 | MS.gene49352:intron | 35.0% | |
| CCTTGTTCCATGAAATTTCA+GGG | + | chr1.1:53207751-53207770 | None:intergenic | 35.0% | |
| CTCCAGAAACTAATCCTTAA+TGG | + | chr1.1:53210033-53210052 | None:intergenic | 35.0% | |
| CTTCAATAGAATAGCTAACG+GGG | - | chr1.1:53211449-53211468 | MS.gene49352:intron | 35.0% | |
| CTTGTTCCATGAAATTTCAG+GGG | + | chr1.1:53207750-53207769 | None:intergenic | 35.0% | |
| GAATATTCAGTGTTCGTCAA+TGG | - | chr1.1:53211406-53211425 | MS.gene49352:intron | 35.0% | |
| GCTTCAATAGAATAGCTAAC+GGG | - | chr1.1:53211448-53211467 | MS.gene49352:intron | 35.0% | |
| GGAAAATGGGAGTTTGAATT+TGG | + | chr1.1:53207636-53207655 | None:intergenic | 35.0% | |
| GGAAATATTAGACATGAGGA+TGG | - | chr1.1:53212277-53212296 | MS.gene49352:CDS | 35.0% | |
| GTATCCTTGTGCTTAAAATC+AGG | + | chr1.1:53212200-53212219 | None:intergenic | 35.0% | |
| GTGCATGAAAAATGAAATGG+AGG | + | chr1.1:53209913-53209932 | None:intergenic | 35.0% | |
| GTTATAAACGGAGTTAGACA+TGG | + | chr1.1:53212052-53212071 | None:intergenic | 35.0% | |
| TACTACATACTACAATCCAC+TGG | + | chr1.1:53208520-53208539 | None:intergenic | 35.0% | |
| TACTTGAAACCCAATGCTAT+GGG | + | chr1.1:53211119-53211138 | None:intergenic | 35.0% | |
| TATGATATGTGCTGGAAACA+TGG | - | chr1.1:53209436-53209455 | MS.gene49352:intron | 35.0% | |
| TATTGGAATTGTTCCCTTCA+CGG | + | chr1.1:53210471-53210490 | None:intergenic | 35.0% | |
| TCCAATTCCATCACCAATAA+TGG | - | chr1.1:53207704-53207723 | MS.gene49352:CDS | 35.0% | |
| TCCTTGTTCCATGAAATTTC+AGG | + | chr1.1:53207752-53207771 | None:intergenic | 35.0% | |
| TGCTTAAAATCAGGAGCTTT+GGG | + | chr1.1:53212191-53212210 | None:intergenic | 35.0% | |
| TGGAGTTTCGTGTTAATTGA+AGG | + | chr1.1:53209474-53209493 | None:intergenic | 35.0% | |
| TGGTATCTTCATTCGTTATG+TGG | + | chr1.1:53211159-53211178 | None:intergenic | 35.0% | |
| TGTAGTATCTACCTTTAGCT+GGG | - | chr1.1:53208533-53208552 | MS.gene49352:intron | 35.0% | |
| TTCAATAGAATAGCTAACGG+GGG | - | chr1.1:53211450-53211469 | MS.gene49352:intron | 35.0% | |
| TTGGATGGAATTTAACAGCA+GGG | + | chr1.1:53210971-53210990 | None:intergenic | 35.0% | |
| TTGTTCCATGAAATTTCAGG+GGG | + | chr1.1:53207749-53207768 | None:intergenic | 35.0% | |
| ! | ATGCACTGAAGTTTAGGATT+AGG | - | chr1.1:53209927-53209946 | MS.gene49352:intron | 35.0% |
| ! | ATGGGTTGTTTATACCTCAA+GGG | - | chr1.1:53211556-53211575 | MS.gene49352:intron | 35.0% |
| ! | ATGTTGTTTAATAGGACCTC+AGG | + | chr1.1:53210911-53210930 | None:intergenic | 35.0% |
| ! | ATTAATGCAAAAGGGGTACA+CGG | + | chr1.1:53211680-53211699 | None:intergenic | 35.0% |
| ! | CGTGGATTCATTTGACATTT+TGG | - | chr1.1:53207894-53207913 | MS.gene49352:intron | 35.0% |
| ! | GAAGTTTAGGATTAGGAAGA+GGG | - | chr1.1:53209934-53209953 | MS.gene49352:intron | 35.0% |
| ! | GATTTTAAGCACAAGGATAC+TGG | - | chr1.1:53212200-53212219 | MS.gene49352:CDS | 35.0% |
| ! | TAGCTGACTCAATACAATAC+AGG | + | chr1.1:53210502-53210521 | None:intergenic | 35.0% |
| ! | TCTGAACAAGGTTTTTACGT+CGG | - | chr1.1:53210369-53210388 | MS.gene49352:intron | 35.0% |
| ! | TGAAGTTTAGGATTAGGAAG+AGG | - | chr1.1:53209933-53209952 | MS.gene49352:intron | 35.0% |
| ! | TGTTGTTTAATAGGACCTCA+GGG | + | chr1.1:53210910-53210929 | None:intergenic | 35.0% |
| ! | TTACCTTGGCTTTCTTTATC+TGG | - | chr1.1:53211992-53212011 | MS.gene49352:CDS | 35.0% |
| !! | AAGAGAGTGTTGTGGAAAAT+GGG | + | chr1.1:53207649-53207668 | None:intergenic | 35.0% |
| !! | AATTAGGTGTTAAGTTGAGG+AGG | - | chr1.1:53211475-53211494 | MS.gene49352:intron | 35.0% |
| !! | ATCAGATTCATGTTTCTGGT+CGG | - | chr1.1:53207960-53207979 | MS.gene49352:intron | 35.0% |
| !! | ATTAGGTGTTAAGTTGAGGA+GGG | - | chr1.1:53211476-53211495 | MS.gene49352:intron | 35.0% |
| !! | GAAATTTCTGTGGATTGGTT+TGG | + | chr1.1:53207672-53207691 | None:intergenic | 35.0% |
| !! | GAAGGTGTTTGATTTCAACT+GGG | + | chr1.1:53207814-53207833 | None:intergenic | 35.0% |
| !! | GAGAAAGTTGTTTGGGTTTT+TGG | + | chr1.1:53209063-53209082 | None:intergenic | 35.0% |
| !! | GATACTGTTGATTCTCTTGA+TGG | - | chr1.1:53207992-53208011 | MS.gene49352:intron | 35.0% |
| !! | GTTGTGGATTTTTGTTTAGG+TGG | - | chr1.1:53208109-53208128 | MS.gene49352:intron | 35.0% |
| !! | TCCATTATTGGTGATGGAAT+TGG | + | chr1.1:53207708-53207727 | None:intergenic | 35.0% |
| AAAAAGCGAAACCCAGCTAA+AGG | + | chr1.1:53208547-53208566 | None:intergenic | 40.0% | |
| AAAATGCTTCGCAAATGTCG+TGG | - | chr1.1:53207876-53207895 | MS.gene49352:intron | 40.0% | |
| AAAGCACATATCAACCGTGA+AGG | - | chr1.1:53210454-53210473 | MS.gene49352:intron | 40.0% | |
| AAATCAAACACCTTCCTTCC+GGG | - | chr1.1:53207819-53207838 | MS.gene49352:intron | 40.0% | |
| AAGCACATATCAACCGTGAA+GGG | - | chr1.1:53210455-53210474 | MS.gene49352:intron | 40.0% | |
| AAGGCGAGTTATGCTTCAAA+TGG | - | chr1.1:53208609-53208628 | MS.gene49352:intron | 40.0% | |
| AATGGAGGAAACGGCAATAT+TGG | + | chr1.1:53210617-53210636 | None:intergenic | 40.0% | |
| AGCAACTCCGTCAATTTGAT+CGG | - | chr1.1:53207776-53207795 | MS.gene49352:intron | 40.0% | |
| AGTGTTCGTCAATGGAAAAC+TGG | - | chr1.1:53211414-53211433 | MS.gene49352:intron | 40.0% | |
| AGTGTTTGCATGAGACATCT+GGG | - | chr1.1:53211258-53211277 | MS.gene49352:CDS | 40.0% | |
| ATAGCTAACGGGGGTTAATT+AGG | - | chr1.1:53211459-53211478 | MS.gene49352:intron | 40.0% | |
| CAATACAGGCAGCAAGATAT+TGG | + | chr1.1:53210488-53210507 | None:intergenic | 40.0% | |
| CATGAAATTTCAGGGGGTTT+AGG | + | chr1.1:53207743-53207762 | None:intergenic | 40.0% | |
| CCACAGTACAAGGTTTATGT+CGG | - | chr1.1:53209990-53210009 | MS.gene49352:intron | 40.0% | |
| CCCTGAAATTTCATGGAACA+AGG | - | chr1.1:53207748-53207767 | MS.gene49352:intron | 40.0% | |
| CCGACATAAATCTCATCCTT+TGG | + | chr1.1:53210702-53210721 | None:intergenic | 40.0% | |
| CTAAACCCCCTGAAATTTCA+TGG | - | chr1.1:53207741-53207760 | MS.gene49352:intron | 40.0% | |
| CTTATACCGGTCAAAATGGT+AGG | - | chr1.1:53212303-53212322 | MS.gene49352:CDS | 40.0% | |
| GAAATCAAACACCTTCCTTC+CGG | - | chr1.1:53207818-53207837 | MS.gene49352:intron | 40.0% | |
| GAGGAAATCATTGAAAGCAG+TGG | + | chr1.1:53209894-53209913 | None:intergenic | 40.0% | |
| GATCCAGATAAAGAAAGCCA+AGG | + | chr1.1:53211998-53212017 | None:intergenic | 40.0% | |
| GCTTAAAATCAGGAGCTTTG+GGG | + | chr1.1:53212190-53212209 | None:intergenic | 40.0% | |
| GCTTCTCAACATGTTCAGAA+AGG | - | chr1.1:53207935-53207954 | MS.gene49352:intron | 40.0% | |
| GGTCATCAGATTCATGTTTC+TGG | - | chr1.1:53207956-53207975 | MS.gene49352:intron | 40.0% | |
| GTACATTGGCCAATAAGAAC+TGG | - | chr1.1:53211795-53211814 | MS.gene49352:intron | 40.0% | |
| GTATGATGCTGCTCCATTAT+TGG | + | chr1.1:53207720-53207739 | None:intergenic | 40.0% | |
| GTGCTTAAAATCAGGAGCTT+TGG | + | chr1.1:53212192-53212211 | None:intergenic | 40.0% | |
| GTGTCTACTGTGAAAGTAGA+GGG | + | chr1.1:53210941-53210960 | None:intergenic | 40.0% | |
| GTTGGATGGAATTTAACAGC+AGG | + | chr1.1:53210972-53210991 | None:intergenic | 40.0% | |
| GTTGTTTAATAGGACCTCAG+GGG | + | chr1.1:53210909-53210928 | None:intergenic | 40.0% | |
| TAGGACCCCAAATTGCATAT+AGG | + | chr1.1:53209119-53209138 | None:intergenic | 40.0% | |
| TAGTGTTTGCATGAGACATC+TGG | - | chr1.1:53211257-53211276 | MS.gene49352:CDS | 40.0% | |
| TATGCTTCAAATGGTACGAC+TGG | - | chr1.1:53208618-53208637 | MS.gene49352:intron | 40.0% | |
| TGAAATAGTTGAGATGCGGA+AGG | - | chr1.1:53210827-53210846 | MS.gene49352:intron | 40.0% | |
| TGCAAGTAGCCAGTTCTTAT+TGG | + | chr1.1:53211807-53211826 | None:intergenic | 40.0% | |
| TGCGTCTTCACAAACATTTC+TGG | - | chr1.1:53212148-53212167 | MS.gene49352:CDS | 40.0% | |
| TGGATGGAATTTAACAGCAG+GGG | + | chr1.1:53210970-53210989 | None:intergenic | 40.0% | |
| TGTCTACTGTGAAAGTAGAG+GGG | + | chr1.1:53210940-53210959 | None:intergenic | 40.0% | |
| TGTGTCTACTGTGAAAGTAG+AGG | + | chr1.1:53210942-53210961 | None:intergenic | 40.0% | |
| ! | AGCTCCTGATTTTAAGCACA+AGG | - | chr1.1:53212193-53212212 | MS.gene49352:CDS | 40.0% |
| ! | ATGAGACATCTGGGATTAAG+AGG | - | chr1.1:53211267-53211286 | MS.gene49352:CDS | 40.0% |
| ! | CAGCTGACTCTTAATGGAAA+AGG | + | chr1.1:53210420-53210439 | None:intergenic | 40.0% |
| ! | CTGAAGTTTAGGACAATGGT+AGG | - | chr1.1:53210650-53210669 | MS.gene49352:intron | 40.0% |
| ! | CTTGTGCTCTTTTCCATAAG+TGG | + | chr1.1:53211095-53211114 | None:intergenic | 40.0% |
| ! | GGGATGAAATTAGGGTTTTG+GGG | + | chr1.1:53207614-53207633 | None:intergenic | 40.0% |
| ! | GGGGATGAAATTAGGGTTTT+GGG | + | chr1.1:53207615-53207634 | None:intergenic | 40.0% |
| ! | TACAGTCAGCTGACTCTTAA+TGG | + | chr1.1:53210426-53210445 | None:intergenic | 40.0% |
| ! | TGCACTGAAGTTTAGGACAA+TGG | - | chr1.1:53210646-53210665 | MS.gene49352:intron | 40.0% |
| ! | TGGGGATGAAATTAGGGTTT+TGG | + | chr1.1:53207616-53207635 | None:intergenic | 40.0% |
| ! | TTTAGGATTAGGAAGAGGGT+AGG | - | chr1.1:53209938-53209957 | MS.gene49352:intron | 40.0% |
| !! | GAAGAGAGTGTTGTGGAAAA+TGG | + | chr1.1:53207650-53207669 | None:intergenic | 40.0% |
| !! | GATGGGTTGTTTATACCTCA+AGG | - | chr1.1:53211555-53211574 | MS.gene49352:intron | 40.0% |
| !! | GGAAGGTGTTTGATTTCAAC+TGG | + | chr1.1:53207815-53207834 | None:intergenic | 40.0% |
| !! | GGATGAAATTAGGGTTTTGG+GGG | + | chr1.1:53207613-53207632 | None:intergenic | 40.0% |
| !! | TCTACTAGCCTTTCAATCAG+TGG | - | chr1.1:53208913-53208932 | MS.gene49352:intron | 40.0% |
| AAAGGCTAGTAGAAAGAGCG+TGG | + | chr1.1:53208906-53208925 | None:intergenic | 45.0% | |
| AAGCTTTCTTTGCCAACCCA+GGG | - | chr1.1:53208661-53208680 | MS.gene49352:intron | 45.0% | |
| AAGTCCTAAGCCTAGAAACC+GGG | + | chr1.1:53209967-53209986 | None:intergenic | 45.0% | |
| AATTACACTGACCTCCCTTG+AGG | + | chr1.1:53211573-53211592 | None:intergenic | 45.0% | |
| AATTGGGATTTGACCCATGG+TGG | + | chr1.1:53212257-53212276 | None:intergenic | 45.0% | |
| ACCATGGGTCAAATCCCAAT+TGG | - | chr1.1:53212256-53212275 | MS.gene49352:CDS | 45.0% | |
| AGCACAAGACCCATAGCATT+GGG | - | chr1.1:53211107-53211126 | MS.gene49352:intron | 45.0% | |
| AGGTTTCCCTATGACAAGGT+TGG | - | chr1.1:53210670-53210689 | MS.gene49352:intron | 45.0% | |
| AGTCCAAGCAACAACTTTCC+CGG | + | chr1.1:53207840-53207859 | None:intergenic | 45.0% | |
| ATCTGCGCTCACCATATCTA+CGG | + | chr1.1:53212333-53212352 | None:intergenic | 45.0% | |
| CAAGTCCCAACCTTGTCATA+GGG | + | chr1.1:53210679-53210698 | None:intergenic | 45.0% | |
| CAAGTCCTAAGCCTAGAAAC+CGG | + | chr1.1:53209968-53209987 | None:intergenic | 45.0% | |
| CATAGCAAAAGAGGTCCCTA+TGG | + | chr1.1:53209494-53209513 | None:intergenic | 45.0% | |
| CCGACATAAACCTTGTACTG+TGG | + | chr1.1:53209993-53210012 | None:intergenic | 45.0% | |
| CTTTACGAATGTCTCCTACG+AGG | + | chr1.1:53209676-53209695 | None:intergenic | 45.0% | |
| GACGAAGCCGATCAAATTGA+CGG | + | chr1.1:53207786-53207805 | None:intergenic | 45.0% | |
| GAGTATGCAGTATGCCAACA+GGG | + | chr1.1:53210296-53210315 | None:intergenic | 45.0% | |
| GGTTGTTTATACCTCAAGGG+AGG | - | chr1.1:53211559-53211578 | MS.gene49352:intron | 45.0% | |
| GGTTTCCCTATGACAAGGTT+GGG | - | chr1.1:53210671-53210690 | MS.gene49352:intron | 45.0% | |
| GTAGACACTAATCTCCCCTA+AGG | + | chr1.1:53211525-53211544 | None:intergenic | 45.0% | |
| GTCTACTGTGAAAGTAGAGG+GGG | + | chr1.1:53210939-53210958 | None:intergenic | 45.0% | |
| GTTGCCGAACACATATCTCT+TGG | + | chr1.1:53209611-53209630 | None:intergenic | 45.0% | |
| TCAAATTGACGGAGTTGCTG+AGG | + | chr1.1:53207775-53207794 | None:intergenic | 45.0% | |
| TCCAATTGGGATTTGACCCA+TGG | + | chr1.1:53212260-53212279 | None:intergenic | 45.0% | |
| TGCTGCTCCATTATTGGTGA+TGG | + | chr1.1:53207714-53207733 | None:intergenic | 45.0% | |
| TGGTAGGTTTCCCTATGACA+AGG | - | chr1.1:53210666-53210685 | MS.gene49352:intron | 45.0% | |
| ! | ATGAGGATGGGGTCTTATAC+CGG | - | chr1.1:53212290-53212309 | MS.gene49352:CDS | 45.0% |
| ! | GGGTCTTATACCGGTCAAAA+TGG | - | chr1.1:53212299-53212318 | MS.gene49352:CDS | 45.0% |
| ! | TAGTAGAAAGAGCGTGGTTG+AGG | + | chr1.1:53208900-53208919 | None:intergenic | 45.0% |
| !! | AAATGGTACGACTGGTTCTG+TGG | - | chr1.1:53208626-53208645 | MS.gene49352:intron | 45.0% |
| !! | AATTACACTGACTTCCCCTG+AGG | - | chr1.1:53210892-53210911 | MS.gene49352:intron | 45.0% |
| !! | ACTAGCCTTTCAATCAGTGG+CGG | - | chr1.1:53208916-53208935 | MS.gene49352:intron | 45.0% |
| !! | CATTTCTGGTAACTTCGCAG+AGG | - | chr1.1:53212162-53212181 | MS.gene49352:CDS | 45.0% |
| !! | CTGGTTCTGTGGTGGAATTA+TGG | - | chr1.1:53208637-53208656 | MS.gene49352:intron | 45.0% |
| !! | TGGTTTGGAAGAGAGTGTTG+TGG | + | chr1.1:53207657-53207676 | None:intergenic | 45.0% |
| !!! | ATTAGGGTTTTGGGGGAAAG+TGG | + | chr1.1:53207606-53207625 | None:intergenic | 45.0% |
| !!! | TGTTTGGGTTTTTGGCTAGC+TGG | + | chr1.1:53209055-53209074 | None:intergenic | 45.0% |
| !! | TTGAATATAATATTATTATA+AGG | - | chr1.1:53209747-53209766 | MS.gene49352:intron | 5.0% |
| !!! | TTTTTGTTTTTATTTTTTAA+TGG | + | chr1.1:53210997-53211016 | None:intergenic | 5.0% |
| AAATCGAACCCCCTGATCCA+AGG | - | chr1.1:53209857-53209876 | MS.gene49352:intron | 50.0% | |
| AATCGAACCCCCTGATCCAA+GGG | - | chr1.1:53209858-53209877 | MS.gene49352:intron | 50.0% | |
| ACAAGGTTGGGACTTGCCAA+AGG | - | chr1.1:53210683-53210702 | MS.gene49352:intron | 50.0% | |
| AGCTTTCTTTGCCAACCCAG+GGG | - | chr1.1:53208662-53208681 | MS.gene49352:intron | 50.0% | |
| AGGATACTGGAGAAGCTCTG+TGG | - | chr1.1:53212213-53212232 | MS.gene49352:CDS | 50.0% | |
| ATGGTAGATCCACTCCACCA+TGG | - | chr1.1:53212240-53212259 | MS.gene49352:CDS | 50.0% | |
| CAAACAGCCATCAACCCTGT+TGG | - | chr1.1:53210279-53210298 | MS.gene49352:intron | 50.0% | |
| CAACAACTTTCCCGGAAGGA+AGG | + | chr1.1:53207832-53207851 | None:intergenic | 50.0% | |
| CAAGCAACAACTTTCCCGGA+AGG | + | chr1.1:53207836-53207855 | None:intergenic | 50.0% | |
| CAAGCTTTCTTTGCCAACCC+AGG | - | chr1.1:53208660-53208679 | MS.gene49352:intron | 50.0% | |
| CAGTATGCCAACAGGGTTGA+TGG | + | chr1.1:53210289-53210308 | None:intergenic | 50.0% | |
| CTTCCGGGAAAGTTGTTGCT+TGG | - | chr1.1:53207834-53207853 | MS.gene49352:intron | 50.0% | |
| GAGCACAAGACCCATAGCAT+TGG | - | chr1.1:53211106-53211125 | MS.gene49352:intron | 50.0% | |
| GCAAGTCCCAACCTTGTCAT+AGG | + | chr1.1:53210680-53210699 | None:intergenic | 50.0% | |
| GGAGTATGCAGTATGCCAAC+AGG | + | chr1.1:53210297-53210316 | None:intergenic | 50.0% | |
| GTGGGACAATAGGAGGAACA+AGG | - | chr1.1:53208689-53208708 | MS.gene49352:intron | 50.0% | |
| TCTGCGCTCACCATATCTAC+GGG | + | chr1.1:53212332-53212351 | None:intergenic | 50.0% | |
| TCTTGATCATGTGACCGCAC+CGG | + | chr1.1:53208173-53208192 | None:intergenic | 50.0% | |
| TGGTAGATCCACTCCACCAT+GGG | - | chr1.1:53212241-53212260 | MS.gene49352:CDS | 50.0% | |
| TGGTAGGATGCCCGTAGATA+TGG | - | chr1.1:53212319-53212338 | MS.gene49352:CDS | 50.0% | |
| ! | GGAGAAGCTCTGTGGATTGA+TGG | - | chr1.1:53212221-53212240 | MS.gene49352:CDS | 50.0% |
| !! | AGGTGTTAAGTTGAGGAGGG+AGG | - | chr1.1:53211479-53211498 | MS.gene49352:intron | 50.0% |
| !! | GGGCATCCTACCATTTTGAC+CGG | + | chr1.1:53212312-53212331 | None:intergenic | 50.0% |
| AGGACTTGCGCCACAGTACA+AGG | - | chr1.1:53209980-53209999 | MS.gene49352:intron | 55.0% | |
| CATTGATAGGAGTGACGCGC+CGG | - | chr1.1:53208151-53208170 | MS.gene49352:intron | 55.0% | |
| TAGGAAGAGGGTAGGTTGCC+CGG | - | chr1.1:53209946-53209965 | MS.gene49352:intron | 55.0% | |
| TATTGTCCCACCACTCCCCT+GGG | + | chr1.1:53208680-53208699 | None:intergenic | 55.0% | |
| TGCATCCCCTCACCACAATG+TGG | + | chr1.1:53208944-53208963 | None:intergenic | 55.0% | |
| TTGAAAGCAGTGGCGTTGCC+AGG | + | chr1.1:53209884-53209903 | None:intergenic | 55.0% | |
| ! | GGATTTGACCCATGGTGGAG+TGG | + | chr1.1:53212252-53212271 | None:intergenic | 55.0% |
| ! | GTTGCCCGGTTTCTAGGCTT+AGG | - | chr1.1:53209960-53209979 | MS.gene49352:intron | 55.0% |
| ! | TGGCTCCGCCACTGATTGAA+AGG | + | chr1.1:53208924-53208943 | None:intergenic | 55.0% |
| !! | TGGTACGACTGGTTCTGTGG+TGG | - | chr1.1:53208629-53208648 | MS.gene49352:intron | 55.0% |
| CGGAGCCACATTGTGGTGAG+GGG | - | chr1.1:53208936-53208955 | MS.gene49352:intron | 60.0% | |
| CTATTGTCCCACCACTCCCC+TGG | + | chr1.1:53208681-53208700 | None:intergenic | 60.0% | |
| GCGGAGCCACATTGTGGTGA+GGG | - | chr1.1:53208935-53208954 | MS.gene49352:intron | 60.0% | |
| GGGTAGGTTGCCCGGTTTCT+AGG | - | chr1.1:53209954-53209973 | MS.gene49352:intron | 60.0% | |
| GTTGCCAGGCCCTTGGATCA+GGG | + | chr1.1:53209870-53209889 | None:intergenic | 60.0% | |
| TCTTTGCCAACCCAGGGGAG+TGG | - | chr1.1:53208667-53208686 | MS.gene49352:intron | 60.0% | |
| TTGCCAGGCCCTTGGATCAG+GGG | + | chr1.1:53209869-53209888 | None:intergenic | 60.0% | |
| ! | CAGGGGAGTGGTGGGACAAT+AGG | - | chr1.1:53208679-53208698 | MS.gene49352:intron | 60.0% |
| ! | GGGAGTGGTGGGACAATAGG+AGG | - | chr1.1:53208682-53208701 | MS.gene49352:intron | 60.0% |
| ! | TCAGTGGCGGAGCCACATTG+TGG | - | chr1.1:53208929-53208948 | MS.gene49352:intron | 60.0% |
| AACCCCCTGATCCAAGGGCC+TGG | - | chr1.1:53209863-53209882 | MS.gene49352:intron | 65.0% | |
| CGTTGCCAGGCCCTTGGATC+AGG | + | chr1.1:53209871-53209890 | None:intergenic | 65.0% | |
| GGCGGAGCCACATTGTGGTG+AGG | - | chr1.1:53208934-53208953 | MS.gene49352:intron | 65.0% | |
| TGCCAACCCAGGGGAGTGGT+GGG | - | chr1.1:53208671-53208690 | MS.gene49352:intron | 65.0% | |
| TGCCAGGCCCTTGGATCAGG+GGG | + | chr1.1:53209868-53209887 | None:intergenic | 65.0% | |
| TTGCCAACCCAGGGGAGTGG+TGG | - | chr1.1:53208670-53208689 | MS.gene49352:intron | 65.0% | |
| ! | ATAGGAGTGACGCGCCGGTG+CGG | - | chr1.1:53208156-53208175 | MS.gene49352:intron | 65.0% |
| CAGTGGCGTTGCCAGGCCCT+TGG | + | chr1.1:53209877-53209896 | None:intergenic | 70.0% | |
| GTCCCACCACTCCCCTGGGT+TGG | + | chr1.1:53208676-53208695 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 53207551 | 53212370 | 53207551 | ID=MS.gene49352 |
| chr1.1 | mRNA | 53207551 | 53212370 | 53207551 | ID=MS.gene49352.t1;Parent=MS.gene49352 |
| chr1.1 | exon | 53211885 | 53212370 | 53211885 | ID=MS.gene49352.t1.exon1;Parent=MS.gene49352.t1 |
| chr1.1 | CDS | 53211885 | 53212370 | 53211885 | ID=cds.MS.gene49352.t1;Parent=MS.gene49352.t1 |
| chr1.1 | exon | 53211700 | 53211793 | 53211700 | ID=MS.gene49352.t1.exon2;Parent=MS.gene49352.t1 |
| chr1.1 | CDS | 53211700 | 53211793 | 53211700 | ID=cds.MS.gene49352.t1;Parent=MS.gene49352.t1 |
| chr1.1 | exon | 53211211 | 53211317 | 53211211 | ID=MS.gene49352.t1.exon3;Parent=MS.gene49352.t1 |
| chr1.1 | CDS | 53211211 | 53211317 | 53211211 | ID=cds.MS.gene49352.t1;Parent=MS.gene49352.t1 |
| chr1.1 | exon | 53207551 | 53207739 | 53207551 | ID=MS.gene49352.t1.exon4;Parent=MS.gene49352.t1 |
| chr1.1 | CDS | 53207551 | 53207739 | 53207551 | ID=cds.MS.gene49352.t1;Parent=MS.gene49352.t1 |
| Gene Sequence |
| Protein sequence |
