Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49602.t1 | XP_003613558.1 | 96.9 | 191 | 6 | 0 | 1 | 191 | 116 | 306 | 4.90E-101 | 377.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49602.t1 | Q8RX77 | 59.7 | 191 | 74 | 2 | 1 | 191 | 136 | 323 | 1.5e-58 | 227.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49602.t1 | G7K9P5 | 96.9 | 191 | 6 | 0 | 1 | 191 | 116 | 306 | 3.5e-101 | 377.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene49602 | 0.8711 | 8.84E-67 | -1.69E-46 |
| MS.gene049378 | MS.gene49602 | 0.855602 | 5.65E-62 | -1.69E-46 |
| MS.gene050105 | MS.gene49602 | 0.822184 | 2.71E-53 | -1.69E-46 |
| MS.gene050226 | MS.gene49602 | 0.815685 | 8.15E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene49602 | 0.811449 | 6.96E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene49602 | 0.816903 | 4.35E-52 | -1.69E-46 |
| MS.gene050508 | MS.gene49602 | 0.829851 | 4.09E-55 | -1.69E-46 |
| MS.gene050605 | MS.gene49602 | 0.801376 | 9.27E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene49602 | -0.811985 | 5.32E-51 | -1.69E-46 |
| MS.gene051064 | MS.gene49602 | 0.805546 | 1.27E-49 | -1.69E-46 |
| MS.gene051122 | MS.gene49602 | 0.834813 | 2.41E-56 | -1.69E-46 |
| MS.gene051368 | MS.gene49602 | 0.833653 | 4.71E-56 | -1.69E-46 |
| MS.gene051541 | MS.gene49602 | 0.804984 | 1.66E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene49602 | 0.80782 | 4.19E-50 | -1.69E-46 |
| MS.gene05216 | MS.gene49602 | 0.81374 | 2.20E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene49602 | 0.811849 | 5.70E-51 | -1.69E-46 |
| MS.gene052333 | MS.gene49602 | 0.82911 | 6.18E-55 | -1.69E-46 |
| MS.gene052389 | MS.gene49602 | 0.832808 | 7.65E-56 | -1.69E-46 |
| MS.gene052464 | MS.gene49602 | 0.815323 | 9.80E-52 | -1.69E-46 |
| MS.gene052586 | MS.gene49602 | 0.846827 | 1.70E-59 | -1.69E-46 |
| MS.gene052674 | MS.gene49602 | 0.814161 | 1.77E-51 | -1.69E-46 |
| MS.gene052675 | MS.gene49602 | 0.809933 | 1.48E-50 | -1.69E-46 |
| MS.gene052677 | MS.gene49602 | 0.814646 | 1.39E-51 | -1.69E-46 |
| MS.gene052954 | MS.gene49602 | 0.824244 | 8.97E-54 | -1.69E-46 |
| MS.gene054468 | MS.gene49602 | 0.817962 | 2.51E-52 | -1.69E-46 |
| MS.gene054479 | MS.gene49602 | 0.841146 | 5.67E-58 | -1.69E-46 |
| MS.gene054930 | MS.gene49602 | 0.808747 | 2.66E-50 | -1.69E-46 |
| MS.gene055225 | MS.gene49602 | 0.809139 | 2.19E-50 | -1.69E-46 |
| MS.gene055367 | MS.gene49602 | 0.812899 | 3.36E-51 | -1.69E-46 |
| MS.gene055701 | MS.gene49602 | 0.863808 | 1.91E-64 | -1.69E-46 |
| MS.gene05595 | MS.gene49602 | 0.820363 | 7.13E-53 | -1.69E-46 |
| MS.gene056064 | MS.gene49602 | 0.804436 | 2.16E-49 | -1.69E-46 |
| MS.gene056480 | MS.gene49602 | 0.809251 | 2.08E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene49602 | 0.813069 | 3.09E-51 | -1.69E-46 |
| MS.gene056849 | MS.gene49602 | 0.826836 | 2.18E-54 | -1.69E-46 |
| MS.gene057156 | MS.gene49602 | -0.830676 | 2.57E-55 | -1.69E-46 |
| MS.gene05761 | MS.gene49602 | 0.820992 | 5.12E-53 | -1.69E-46 |
| MS.gene058223 | MS.gene49602 | -0.836445 | 9.32E-57 | -1.69E-46 |
| MS.gene058399 | MS.gene49602 | 0.805839 | 1.10E-49 | -1.69E-46 |
| MS.gene058429 | MS.gene49602 | 0.823667 | 1.22E-53 | -1.69E-46 |
| MS.gene058435 | MS.gene49602 | 0.802074 | 6.67E-49 | -1.69E-46 |
| MS.gene058595 | MS.gene49602 | 0.804232 | 2.38E-49 | -1.69E-46 |
| MS.gene059710 | MS.gene49602 | 0.809914 | 1.49E-50 | -1.69E-46 |
| MS.gene060011 | MS.gene49602 | 0.828808 | 7.32E-55 | -1.69E-46 |
| MS.gene060850 | MS.gene49602 | 0.83834 | 3.05E-57 | -1.69E-46 |
| MS.gene060851 | MS.gene49602 | 0.85494 | 8.81E-62 | -1.69E-46 |
| MS.gene060852 | MS.gene49602 | 0.854208 | 1.43E-61 | -1.69E-46 |
| MS.gene060879 | MS.gene49602 | 0.82877 | 7.47E-55 | -1.69E-46 |
| MS.gene060998 | MS.gene49602 | 0.801398 | 9.17E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49602.t1 | MTR_5g038060 | 96.859 | 191 | 6 | 0 | 1 | 191 | 116 | 306 | 1.08e-130 | 380 |
| MS.gene49602.t1 | MTR_8g469480 | 67.895 | 190 | 61 | 0 | 2 | 191 | 124 | 313 | 8.57e-92 | 280 |
| MS.gene49602.t1 | MTR_5g038190 | 49.738 | 191 | 94 | 1 | 1 | 191 | 109 | 297 | 1.52e-61 | 200 |
| MS.gene49602.t1 | MTR_8g469470 | 50.785 | 191 | 93 | 1 | 1 | 191 | 117 | 306 | 1.28e-60 | 198 |
| MS.gene49602.t1 | MTR_4g107510 | 47.396 | 192 | 94 | 3 | 1 | 191 | 121 | 306 | 5.14e-53 | 178 |
| MS.gene49602.t1 | MTR_4g107610 | 48.235 | 170 | 86 | 1 | 1 | 170 | 116 | 283 | 5.43e-51 | 173 |
| MS.gene49602.t1 | MTR_4g107580 | 44.560 | 193 | 99 | 3 | 1 | 191 | 109 | 295 | 8.55e-50 | 170 |
| MS.gene49602.t1 | MTR_4g107530 | 45.550 | 191 | 99 | 2 | 1 | 191 | 118 | 303 | 2.86e-49 | 168 |
| MS.gene49602.t1 | MTR_5g055000 | 44.512 | 164 | 86 | 2 | 1 | 163 | 103 | 262 | 2.03e-41 | 147 |
| MS.gene49602.t1 | MTR_7g064780 | 40.513 | 195 | 106 | 3 | 1 | 191 | 111 | 299 | 3.64e-41 | 146 |
| MS.gene49602.t1 | MTR_7g064800 | 40.102 | 197 | 106 | 4 | 1 | 191 | 111 | 301 | 6.21e-41 | 145 |
| MS.gene49602.t1 | MTR_7g088820 | 43.452 | 168 | 83 | 3 | 1 | 164 | 48 | 207 | 1.36e-38 | 139 |
| MS.gene49602.t1 | MTR_7g088820 | 43.452 | 168 | 83 | 3 | 1 | 164 | 110 | 269 | 2.04e-38 | 139 |
| MS.gene49602.t1 | MTR_7g088820 | 43.114 | 167 | 83 | 3 | 2 | 164 | 1 | 159 | 6.74e-38 | 136 |
| MS.gene49602.t1 | MTR_7g088825 | 42.262 | 168 | 85 | 3 | 1 | 164 | 107 | 266 | 1.89e-37 | 136 |
| MS.gene49602.t1 | MTR_1g026740 | 38.150 | 173 | 99 | 3 | 1 | 172 | 102 | 267 | 1.24e-36 | 134 |
| MS.gene49602.t1 | MTR_2g101650 | 38.728 | 173 | 101 | 4 | 1 | 172 | 109 | 277 | 8.39e-36 | 132 |
| MS.gene49602.t1 | MTR_1g009200 | 39.881 | 168 | 94 | 3 | 1 | 165 | 112 | 275 | 3.06e-35 | 130 |
| MS.gene49602.t1 | MTR_7g088790 | 41.463 | 164 | 92 | 1 | 1 | 164 | 114 | 273 | 1.49e-34 | 128 |
| MS.gene49602.t1 | MTR_7g098180 | 38.182 | 165 | 102 | 0 | 1 | 165 | 116 | 280 | 1.56e-33 | 125 |
| MS.gene49602.t1 | MTR_2g101590 | 38.650 | 163 | 95 | 3 | 1 | 162 | 111 | 269 | 1.84e-33 | 125 |
| MS.gene49602.t1 | MTR_7g067010 | 38.323 | 167 | 96 | 3 | 1 | 167 | 109 | 268 | 2.02e-33 | 125 |
| MS.gene49602.t1 | MTR_1g026770 | 35.676 | 185 | 108 | 4 | 7 | 191 | 106 | 279 | 2.30e-33 | 125 |
| MS.gene49602.t1 | MTR_7g098220 | 39.634 | 164 | 98 | 1 | 1 | 164 | 71 | 233 | 1.33e-32 | 122 |
| MS.gene49602.t1 | MTR_1g041815 | 39.024 | 164 | 98 | 1 | 1 | 164 | 112 | 273 | 1.40e-32 | 122 |
| MS.gene49602.t1 | MTR_7g098220 | 39.634 | 164 | 98 | 1 | 1 | 164 | 115 | 277 | 1.73e-32 | 122 |
| MS.gene49602.t1 | MTR_5g012270 | 34.872 | 195 | 116 | 3 | 1 | 191 | 114 | 301 | 1.76e-32 | 122 |
| MS.gene49602.t1 | MTR_1g026750 | 36.747 | 166 | 97 | 4 | 8 | 172 | 110 | 268 | 1.81e-32 | 122 |
| MS.gene49602.t1 | MTR_8g103233 | 39.877 | 163 | 93 | 2 | 1 | 162 | 102 | 260 | 2.07e-32 | 122 |
| MS.gene49602.t1 | MTR_7g098200 | 37.576 | 165 | 102 | 1 | 1 | 165 | 114 | 277 | 6.79e-32 | 120 |
| MS.gene49602.t1 | MTR_1g075440 | 40.244 | 164 | 96 | 1 | 1 | 164 | 113 | 274 | 6.96e-32 | 120 |
| MS.gene49602.t1 | MTR_7g098200 | 37.576 | 165 | 102 | 1 | 1 | 165 | 114 | 277 | 7.29e-32 | 120 |
| MS.gene49602.t1 | MTR_3g462710 | 37.306 | 193 | 110 | 4 | 1 | 191 | 109 | 292 | 1.36e-31 | 120 |
| MS.gene49602.t1 | MTR_3g112470 | 35.204 | 196 | 112 | 5 | 1 | 191 | 108 | 293 | 1.41e-31 | 120 |
| MS.gene49602.t1 | MTR_4g015080 | 36.269 | 193 | 111 | 5 | 1 | 191 | 119 | 301 | 1.60e-31 | 119 |
| MS.gene49602.t1 | MTR_3g462710 | 38.728 | 173 | 100 | 3 | 21 | 191 | 15 | 183 | 2.27e-31 | 118 |
| MS.gene49602.t1 | MTR_7g098040 | 37.805 | 164 | 101 | 1 | 1 | 164 | 119 | 281 | 2.29e-31 | 119 |
| MS.gene49602.t1 | MTR_2g101610 | 36.810 | 163 | 98 | 3 | 1 | 162 | 112 | 270 | 2.46e-31 | 119 |
| MS.gene49602.t1 | MTR_7g098200 | 37.195 | 164 | 102 | 1 | 2 | 165 | 1 | 163 | 2.62e-31 | 118 |
| MS.gene49602.t1 | MTR_4g011280 | 36.416 | 173 | 104 | 4 | 1 | 172 | 117 | 284 | 3.55e-31 | 119 |
| MS.gene49602.t1 | MTR_3g112460 | 34.694 | 196 | 113 | 5 | 1 | 191 | 108 | 293 | 9.01e-31 | 117 |
| MS.gene49602.t1 | MTR_1g041835 | 37.805 | 164 | 100 | 1 | 1 | 164 | 112 | 273 | 2.13e-30 | 116 |
| MS.gene49602.t1 | MTR_7g098230 | 37.654 | 162 | 100 | 1 | 1 | 162 | 111 | 271 | 3.02e-30 | 116 |
| MS.gene49602.t1 | MTR_1g041885 | 37.195 | 164 | 101 | 1 | 1 | 164 | 67 | 228 | 1.28e-29 | 114 |
| MS.gene49602.t1 | MTR_3g069500 | 35.429 | 175 | 103 | 3 | 1 | 175 | 120 | 284 | 2.07e-29 | 114 |
| MS.gene49602.t1 | MTR_3g069440 | 36.471 | 170 | 98 | 3 | 6 | 175 | 123 | 282 | 5.64e-29 | 112 |
| MS.gene49602.t1 | MTR_7g098090 | 35.366 | 164 | 105 | 1 | 1 | 164 | 118 | 280 | 6.00e-29 | 112 |
| MS.gene49602.t1 | MTR_1g041875 | 37.805 | 164 | 100 | 1 | 1 | 164 | 114 | 275 | 6.58e-29 | 112 |
| MS.gene49602.t1 | MTR_7g098150 | 35.366 | 164 | 105 | 1 | 1 | 164 | 118 | 280 | 7.69e-29 | 111 |
| MS.gene49602.t1 | MTR_2g101640 | 35.583 | 163 | 100 | 3 | 1 | 162 | 108 | 266 | 7.95e-29 | 112 |
| MS.gene49602.t1 | MTR_7g006540 | 34.872 | 195 | 121 | 3 | 1 | 191 | 148 | 340 | 1.09e-28 | 112 |
| MS.gene49602.t1 | MTR_7g098160 | 34.146 | 164 | 107 | 1 | 1 | 164 | 118 | 280 | 3.87e-28 | 110 |
| MS.gene49602.t1 | MTR_1g009170 | 42.975 | 121 | 66 | 2 | 47 | 164 | 10 | 130 | 1.07e-27 | 107 |
| MS.gene49602.t1 | MTR_3g112450 | 35.714 | 196 | 113 | 5 | 1 | 191 | 108 | 295 | 2.92e-27 | 107 |
| MS.gene49602.t1 | MTR_1g042310 | 37.576 | 165 | 99 | 3 | 1 | 164 | 67 | 228 | 7.54e-27 | 106 |
| MS.gene49602.t1 | MTR_1g042310 | 37.576 | 165 | 99 | 3 | 1 | 164 | 111 | 272 | 7.76e-27 | 106 |
| MS.gene49602.t1 | MTR_1g042310 | 37.576 | 165 | 99 | 3 | 1 | 164 | 74 | 235 | 8.34e-27 | 106 |
| MS.gene49602.t1 | MTR_3g072300 | 36.747 | 166 | 96 | 5 | 1 | 164 | 109 | 267 | 8.86e-26 | 103 |
| MS.gene49602.t1 | MTR_4g019580 | 35.366 | 164 | 100 | 2 | 1 | 164 | 121 | 278 | 1.15e-25 | 103 |
| MS.gene49602.t1 | MTR_2g101560 | 34.356 | 163 | 102 | 3 | 1 | 162 | 112 | 270 | 1.25e-25 | 103 |
| MS.gene49602.t1 | MTR_5g014150 | 33.333 | 153 | 95 | 3 | 14 | 164 | 142 | 289 | 4.86e-25 | 101 |
| MS.gene49602.t1 | MTR_1g057460 | 37.692 | 130 | 79 | 2 | 34 | 162 | 150 | 278 | 5.91e-25 | 101 |
| MS.gene49602.t1 | MTR_0236s0050 | 38.346 | 133 | 80 | 2 | 31 | 162 | 76 | 207 | 6.60e-25 | 100 |
| MS.gene49602.t1 | MTR_1g057460 | 37.692 | 130 | 79 | 2 | 34 | 162 | 79 | 207 | 7.66e-25 | 100 |
| MS.gene49602.t1 | MTR_3g100980 | 33.129 | 163 | 108 | 1 | 5 | 166 | 105 | 267 | 1.17e-24 | 100 |
| MS.gene49602.t1 | MTR_3g069420 | 36.196 | 163 | 97 | 2 | 1 | 163 | 119 | 274 | 5.30e-24 | 98.6 |
| MS.gene49602.t1 | MTR_4g033325 | 35.227 | 176 | 95 | 5 | 1 | 171 | 18 | 179 | 1.07e-23 | 97.4 |
| MS.gene49602.t1 | MTR_4g033315 | 34.706 | 170 | 92 | 5 | 6 | 170 | 121 | 276 | 2.20e-23 | 97.1 |
| MS.gene49602.t1 | MTR_4g033310 | 34.706 | 170 | 92 | 5 | 6 | 170 | 121 | 276 | 2.20e-23 | 97.1 |
| MS.gene49602.t1 | MTR_4g033325 | 35.673 | 171 | 91 | 5 | 6 | 171 | 121 | 277 | 3.39e-23 | 96.3 |
| MS.gene49602.t1 | MTR_5g012290 | 31.282 | 195 | 124 | 3 | 1 | 191 | 112 | 300 | 3.79e-23 | 96.3 |
| MS.gene49602.t1 | MTR_7g065080 | 34.756 | 164 | 101 | 1 | 1 | 164 | 29 | 186 | 4.91e-23 | 95.5 |
| MS.gene49602.t1 | MTR_7g065080 | 34.756 | 164 | 101 | 1 | 1 | 164 | 116 | 273 | 6.22e-23 | 95.5 |
| MS.gene49602.t1 | MTR_4g033330 | 35.032 | 157 | 85 | 4 | 19 | 170 | 132 | 276 | 7.48e-23 | 95.1 |
| MS.gene49602.t1 | MTR_4g033325 | 36.424 | 151 | 89 | 4 | 25 | 170 | 4 | 152 | 2.41e-22 | 93.6 |
| MS.gene49602.t1 | MTR_8g469310 | 33.333 | 153 | 98 | 1 | 1 | 153 | 111 | 259 | 2.63e-22 | 94.0 |
| MS.gene49602.t1 | MTR_5g085850 | 29.843 | 191 | 125 | 1 | 1 | 191 | 115 | 296 | 3.62e-22 | 93.6 |
| MS.gene49602.t1 | MTR_4g101380 | 32.308 | 195 | 123 | 3 | 1 | 191 | 112 | 301 | 1.09e-21 | 92.0 |
| MS.gene49602.t1 | MTR_7g010820 | 28.571 | 161 | 112 | 1 | 1 | 161 | 111 | 268 | 1.27e-21 | 92.0 |
| MS.gene49602.t1 | MTR_4g107670 | 33.987 | 153 | 96 | 2 | 1 | 153 | 109 | 256 | 1.41e-21 | 91.7 |
| MS.gene49602.t1 | MTR_5g038380 | 31.373 | 153 | 101 | 1 | 1 | 153 | 113 | 261 | 1.88e-21 | 91.3 |
| MS.gene49602.t1 | MTR_0294s0020 | 37.748 | 151 | 85 | 6 | 25 | 170 | 128 | 274 | 1.90e-21 | 91.3 |
| MS.gene49602.t1 | MTR_4g098800 | 27.439 | 164 | 116 | 1 | 1 | 164 | 186 | 346 | 2.18e-21 | 91.3 |
| MS.gene49602.t1 | MTR_4g098800 | 27.439 | 164 | 116 | 1 | 1 | 164 | 121 | 281 | 2.18e-21 | 91.3 |
| MS.gene49602.t1 | MTR_4g033395 | 34.091 | 176 | 97 | 4 | 1 | 171 | 117 | 278 | 2.73e-21 | 90.9 |
| MS.gene49602.t1 | MTR_4g033385 | 34.286 | 175 | 96 | 4 | 1 | 170 | 16 | 176 | 2.96e-21 | 90.5 |
| MS.gene49602.t1 | MTR_4g033375 | 33.714 | 175 | 97 | 5 | 1 | 170 | 117 | 277 | 7.17e-21 | 89.7 |
| MS.gene49602.t1 | MTR_2g017750 | 30.909 | 165 | 112 | 2 | 1 | 164 | 119 | 282 | 8.46e-21 | 89.4 |
| MS.gene49602.t1 | MTR_7g005930 | 28.488 | 172 | 117 | 2 | 1 | 169 | 120 | 288 | 9.58e-21 | 89.4 |
| MS.gene49602.t1 | MTR_3g005010 | 33.333 | 135 | 87 | 1 | 33 | 164 | 129 | 263 | 2.97e-20 | 87.8 |
| MS.gene49602.t1 | MTR_3g014790 | 37.500 | 120 | 75 | 0 | 41 | 160 | 120 | 239 | 6.08e-20 | 87.0 |
| MS.gene49602.t1 | MTR_4g114340 | 33.714 | 175 | 110 | 2 | 1 | 175 | 109 | 277 | 8.38e-20 | 86.7 |
| MS.gene49602.t1 | MTR_3g100980 | 28.272 | 191 | 108 | 2 | 5 | 166 | 105 | 295 | 2.51e-19 | 85.1 |
| MS.gene49602.t1 | MTR_8g087810 | 29.341 | 167 | 116 | 2 | 1 | 166 | 106 | 271 | 2.62e-19 | 85.1 |
| MS.gene49602.t1 | MTR_8g087780 | 30.723 | 166 | 111 | 3 | 1 | 164 | 106 | 269 | 3.03e-19 | 85.1 |
| MS.gene49602.t1 | MTR_2g005130 | 27.749 | 191 | 122 | 4 | 1 | 180 | 125 | 310 | 2.84e-18 | 82.0 |
| MS.gene49602.t1 | MTR_1g085090 | 27.749 | 191 | 124 | 4 | 1 | 190 | 104 | 281 | 5.98e-17 | 78.6 |
| MS.gene49602.t1 | MTR_2g093640 | 29.143 | 175 | 114 | 3 | 13 | 187 | 118 | 282 | 8.04e-17 | 77.8 |
| MS.gene49602.t1 | MTR_7g111260 | 31.515 | 165 | 103 | 4 | 5 | 168 | 108 | 263 | 9.74e-17 | 77.8 |
| MS.gene49602.t1 | MTR_1g116930 | 27.950 | 161 | 108 | 2 | 1 | 159 | 108 | 262 | 6.69e-16 | 75.5 |
| MS.gene49602.t1 | MTR_7g013270 | 28.659 | 164 | 103 | 4 | 14 | 169 | 188 | 345 | 6.78e-16 | 75.5 |
| MS.gene49602.t1 | MTR_4g123537 | 28.333 | 180 | 123 | 3 | 13 | 191 | 133 | 307 | 3.22e-15 | 73.6 |
| MS.gene49602.t1 | MTR_8g038880 | 37.705 | 122 | 76 | 0 | 39 | 160 | 121 | 242 | 6.16e-15 | 72.4 |
| MS.gene49602.t1 | MTR_2g093180 | 27.632 | 152 | 103 | 2 | 13 | 164 | 118 | 262 | 1.23e-13 | 68.9 |
| MS.gene49602.t1 | MTR_7g051880 | 30.189 | 159 | 98 | 2 | 1 | 159 | 110 | 255 | 4.01e-13 | 67.4 |
| MS.gene49602.t1 | MTR_7g051830 | 30.189 | 159 | 98 | 2 | 1 | 159 | 110 | 255 | 4.64e-12 | 64.3 |
| MS.gene49602.t1 | MTR_6g008690 | 32.090 | 134 | 72 | 3 | 50 | 165 | 127 | 259 | 1.22e-11 | 62.8 |
| MS.gene49602.t1 | MTR_2g093160 | 27.439 | 164 | 112 | 2 | 1 | 164 | 106 | 262 | 1.80e-11 | 62.4 |
| MS.gene49602.t1 | MTR_7g052600 | 30.189 | 159 | 98 | 3 | 1 | 159 | 110 | 255 | 3.14e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49602.t1 | AT1G69870 | 59.686 | 191 | 74 | 2 | 1 | 191 | 136 | 323 | 1.34e-72 | 230 |
| MS.gene49602.t1 | AT1G27080 | 52.880 | 191 | 86 | 3 | 1 | 191 | 57 | 243 | 2.13e-61 | 199 |
| MS.gene49602.t1 | AT1G27080 | 53.403 | 191 | 85 | 3 | 1 | 191 | 99 | 285 | 4.22e-61 | 199 |
| MS.gene49602.t1 | AT1G69860 | 46.875 | 192 | 95 | 3 | 1 | 191 | 103 | 288 | 3.64e-51 | 172 |
| MS.gene49602.t1 | AT5G62680 | 41.885 | 191 | 106 | 2 | 1 | 191 | 128 | 313 | 3.03e-48 | 166 |
| MS.gene49602.t1 | AT1G18880 | 46.988 | 166 | 84 | 2 | 1 | 164 | 104 | 267 | 6.13e-46 | 159 |
| MS.gene49602.t1 | AT5G28470 | 48.125 | 160 | 80 | 1 | 1 | 160 | 102 | 258 | 2.14e-44 | 155 |
| MS.gene49602.t1 | AT5G28470 | 48.125 | 160 | 80 | 1 | 1 | 160 | 102 | 258 | 2.19e-44 | 155 |
| MS.gene49602.t1 | AT3G16180 | 41.618 | 173 | 98 | 2 | 1 | 172 | 108 | 278 | 2.68e-40 | 144 |
| MS.gene49602.t1 | AT1G52190 | 39.884 | 173 | 102 | 2 | 1 | 172 | 106 | 277 | 7.99e-40 | 143 |
| MS.gene49602.t1 | AT3G47960 | 45.000 | 160 | 84 | 1 | 1 | 160 | 146 | 301 | 5.66e-38 | 138 |
| MS.gene49602.t1 | AT3G54140 | 40.719 | 167 | 93 | 2 | 1 | 167 | 109 | 269 | 3.45e-36 | 132 |
| MS.gene49602.t1 | AT3G54140 | 40.719 | 167 | 93 | 2 | 1 | 167 | 109 | 269 | 3.45e-36 | 132 |
| MS.gene49602.t1 | AT2G02040 | 41.463 | 164 | 91 | 1 | 1 | 164 | 126 | 284 | 6.87e-36 | 132 |
| MS.gene49602.t1 | AT2G02020 | 39.227 | 181 | 104 | 2 | 1 | 181 | 127 | 301 | 2.61e-35 | 130 |
| MS.gene49602.t1 | AT2G02020 | 39.645 | 169 | 97 | 1 | 1 | 169 | 127 | 290 | 3.39e-35 | 129 |
| MS.gene49602.t1 | AT1G62200 | 42.683 | 164 | 92 | 1 | 1 | 164 | 137 | 298 | 3.95e-34 | 127 |
| MS.gene49602.t1 | AT1G62200 | 42.683 | 164 | 92 | 1 | 1 | 164 | 137 | 298 | 5.40e-34 | 127 |
| MS.gene49602.t1 | AT1G62200 | 42.683 | 164 | 92 | 1 | 1 | 164 | 151 | 312 | 6.76e-34 | 127 |
| MS.gene49602.t1 | AT1G68570 | 39.634 | 164 | 95 | 1 | 1 | 164 | 78 | 237 | 2.53e-33 | 124 |
| MS.gene49602.t1 | AT1G68570 | 39.634 | 164 | 95 | 1 | 1 | 164 | 108 | 267 | 2.72e-33 | 125 |
| MS.gene49602.t1 | AT5G01180 | 36.527 | 167 | 99 | 2 | 1 | 167 | 110 | 269 | 8.33e-33 | 123 |
| MS.gene49602.t1 | AT5G01180 | 36.527 | 167 | 99 | 2 | 1 | 167 | 110 | 269 | 8.33e-33 | 123 |
| MS.gene49602.t1 | AT5G01180 | 36.527 | 167 | 99 | 2 | 1 | 167 | 110 | 269 | 8.33e-33 | 123 |
| MS.gene49602.t1 | AT5G13400 | 35.385 | 195 | 120 | 3 | 1 | 191 | 149 | 341 | 3.08e-31 | 119 |
| MS.gene49602.t1 | AT5G46040 | 37.288 | 177 | 105 | 3 | 1 | 176 | 112 | 283 | 1.43e-30 | 117 |
| MS.gene49602.t1 | AT5G46050 | 37.805 | 164 | 100 | 1 | 1 | 164 | 112 | 273 | 2.11e-30 | 116 |
| MS.gene49602.t1 | AT5G46050 | 37.423 | 163 | 100 | 1 | 2 | 164 | 1 | 161 | 6.48e-30 | 114 |
| MS.gene49602.t1 | AT3G45650 | 36.747 | 166 | 96 | 3 | 1 | 165 | 107 | 264 | 2.30e-26 | 105 |
| MS.gene49602.t1 | AT2G40460 | 35.758 | 165 | 99 | 3 | 1 | 164 | 109 | 267 | 2.35e-26 | 105 |
| MS.gene49602.t1 | AT3G45650 | 36.747 | 166 | 96 | 3 | 1 | 165 | 107 | 264 | 2.54e-26 | 105 |
| MS.gene49602.t1 | AT3G45660 | 33.735 | 166 | 101 | 3 | 1 | 165 | 106 | 263 | 4.34e-25 | 101 |
| MS.gene49602.t1 | AT3G45660 | 33.735 | 166 | 101 | 3 | 1 | 165 | 106 | 263 | 4.34e-25 | 101 |
| MS.gene49602.t1 | AT3G21670 | 33.333 | 162 | 108 | 0 | 1 | 162 | 114 | 275 | 4.57e-25 | 101 |
| MS.gene49602.t1 | AT3G45660 | 33.735 | 166 | 101 | 3 | 1 | 165 | 127 | 284 | 5.04e-25 | 101 |
| MS.gene49602.t1 | AT1G27040 | 33.333 | 153 | 100 | 1 | 1 | 153 | 108 | 258 | 4.58e-24 | 99.0 |
| MS.gene49602.t1 | AT1G27040 | 33.333 | 153 | 100 | 1 | 1 | 153 | 112 | 262 | 4.89e-24 | 99.0 |
| MS.gene49602.t1 | AT3G45720 | 34.591 | 159 | 96 | 2 | 1 | 159 | 104 | 254 | 5.12e-24 | 98.6 |
| MS.gene49602.t1 | AT1G27040 | 33.333 | 153 | 100 | 1 | 1 | 153 | 80 | 230 | 6.19e-24 | 98.6 |
| MS.gene49602.t1 | AT3G45690 | 32.530 | 166 | 104 | 2 | 1 | 166 | 103 | 260 | 1.03e-23 | 97.8 |
| MS.gene49602.t1 | AT2G37900 | 34.756 | 164 | 100 | 3 | 1 | 164 | 44 | 200 | 1.46e-23 | 97.1 |
| MS.gene49602.t1 | AT3G45680 | 34.810 | 158 | 95 | 2 | 1 | 158 | 105 | 254 | 1.70e-23 | 97.1 |
| MS.gene49602.t1 | AT2G37900 | 34.756 | 164 | 100 | 3 | 1 | 164 | 123 | 279 | 1.92e-23 | 97.1 |
| MS.gene49602.t1 | AT3G45710 | 33.133 | 166 | 103 | 2 | 1 | 166 | 106 | 263 | 3.43e-23 | 96.3 |
| MS.gene49602.t1 | AT1G22550 | 34.091 | 132 | 83 | 1 | 41 | 168 | 153 | 284 | 6.24e-23 | 95.5 |
| MS.gene49602.t1 | AT1G72120 | 38.211 | 123 | 72 | 1 | 41 | 159 | 144 | 266 | 1.14e-22 | 94.7 |
| MS.gene49602.t1 | AT1G12110 | 32.143 | 196 | 123 | 3 | 1 | 191 | 112 | 302 | 1.46e-22 | 94.7 |
| MS.gene49602.t1 | AT3G54450 | 32.000 | 150 | 100 | 1 | 26 | 175 | 103 | 250 | 2.74e-22 | 94.0 |
| MS.gene49602.t1 | AT3G45700 | 34.177 | 158 | 96 | 2 | 1 | 158 | 101 | 250 | 3.38e-22 | 93.6 |
| MS.gene49602.t1 | AT1G22570 | 34.884 | 129 | 78 | 1 | 41 | 163 | 113 | 241 | 4.82e-22 | 93.2 |
| MS.gene49602.t1 | AT1G22570 | 34.884 | 129 | 78 | 1 | 41 | 163 | 150 | 278 | 4.95e-22 | 93.2 |
| MS.gene49602.t1 | AT2G26690 | 33.742 | 163 | 104 | 1 | 1 | 163 | 76 | 234 | 5.46e-22 | 92.8 |
| MS.gene49602.t1 | AT2G26690 | 33.742 | 163 | 104 | 1 | 1 | 163 | 109 | 267 | 6.27e-22 | 92.8 |
| MS.gene49602.t1 | AT2G26690 | 33.742 | 163 | 104 | 1 | 1 | 163 | 64 | 222 | 6.31e-22 | 92.8 |
| MS.gene49602.t1 | AT1G59740 | 32.121 | 165 | 108 | 2 | 1 | 164 | 126 | 287 | 7.12e-22 | 92.8 |
| MS.gene49602.t1 | AT1G69850 | 30.719 | 153 | 101 | 1 | 1 | 153 | 110 | 257 | 1.04e-21 | 92.0 |
| MS.gene49602.t1 | AT1G72125 | 35.000 | 140 | 85 | 2 | 27 | 160 | 128 | 267 | 3.06e-21 | 90.9 |
| MS.gene49602.t1 | AT1G33440 | 31.707 | 164 | 108 | 2 | 1 | 164 | 123 | 282 | 8.61e-21 | 89.4 |
| MS.gene49602.t1 | AT3G53960 | 31.707 | 164 | 105 | 2 | 1 | 164 | 122 | 278 | 1.67e-20 | 88.6 |
| MS.gene49602.t1 | AT5G62730 | 33.065 | 124 | 79 | 1 | 39 | 158 | 161 | 284 | 3.33e-19 | 85.1 |
| MS.gene49602.t1 | AT5G62730 | 33.065 | 124 | 79 | 1 | 39 | 158 | 102 | 225 | 3.71e-19 | 84.7 |
| MS.gene49602.t1 | AT1G72140 | 30.952 | 210 | 114 | 6 | 1 | 186 | 119 | 321 | 4.60e-19 | 84.3 |
| MS.gene49602.t1 | AT4G21680 | 29.518 | 166 | 112 | 3 | 1 | 165 | 113 | 274 | 1.66e-18 | 82.8 |
| MS.gene49602.t1 | AT1G32450 | 30.000 | 160 | 104 | 4 | 14 | 169 | 135 | 290 | 1.83e-18 | 82.8 |
| MS.gene49602.t1 | AT5G19640 | 28.313 | 166 | 112 | 2 | 1 | 166 | 144 | 302 | 3.74e-18 | 82.0 |
| MS.gene49602.t1 | AT1G22540 | 31.138 | 167 | 96 | 3 | 1 | 160 | 115 | 269 | 7.73e-16 | 75.1 |
| MS.gene49602.t1 | AT1G72130 | 33.333 | 135 | 87 | 1 | 27 | 158 | 5 | 139 | 9.60e-16 | 74.7 |
| MS.gene49602.t1 | AT1G72130 | 33.333 | 135 | 87 | 1 | 27 | 158 | 5 | 139 | 9.60e-16 | 74.7 |
| MS.gene49602.t1 | AT1G72130 | 33.333 | 135 | 87 | 1 | 27 | 158 | 123 | 257 | 1.33e-15 | 74.3 |
| MS.gene49602.t1 | AT5G14940 | 30.128 | 156 | 93 | 4 | 31 | 170 | 107 | 262 | 9.63e-14 | 68.9 |
| MS.gene49602.t1 | AT3G25260 | 27.778 | 162 | 96 | 3 | 1 | 158 | 106 | 250 | 4.14e-13 | 67.4 |
| MS.gene49602.t1 | AT5G11570 | 32.222 | 90 | 59 | 1 | 48 | 135 | 138 | 227 | 7.58e-13 | 66.6 |
| MS.gene49602.t1 | AT3G25280 | 26.471 | 170 | 112 | 2 | 1 | 170 | 106 | 262 | 8.01e-13 | 66.2 |
Find 33 sgRNAs with CRISPR-Local
Find 40 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTCAGTTAGTTGGAAATT+TGG | 0.192292 | 5.1:-28726455 | MS.gene49602:CDS |
| GGATCAATAGTTTCTTTAAT+TGG | 0.208574 | 5.1:-28726538 | MS.gene49602:CDS |
| TCCAATAAAGAACAAAATTA+TGG | 0.209184 | 5.1:+28726400 | None:intergenic |
| AAAATGGCTTTCCCAATTAA+TGG | 0.219508 | 5.1:+28726242 | None:intergenic |
| TGGAGGTAGCTTTGACAAAA+TGG | 0.272360 | 5.1:+28726226 | None:intergenic |
| CCATCAACATGTTTCTCATT+TGG | 0.285026 | 5.1:+28726281 | None:intergenic |
| CAGAGATATCTTACCTGAAT+TGG | 0.304048 | 5.1:+28726198 | None:intergenic |
| TACCTCCAACCAACCAATTC+AGG | 0.327030 | 5.1:-28726211 | None:intergenic |
| TTTCTAAGCATAGGTTCTTC+AGG | 0.331904 | 5.1:-28726629 | MS.gene49602:CDS |
| CATCTGTTGTAGGGTCAAAT+TGG | 0.372917 | 5.1:+28726573 | None:intergenic |
| TTTATGATCCTCCATTAATT+GGG | 0.409170 | 5.1:-28726253 | MS.gene49602:CDS |
| CCAAATGAGAAACATGTTGA+TGG | 0.433993 | 5.1:-28726281 | MS.gene49602:CDS |
| GAAAATAACATGCATAAAGT+TGG | 0.456885 | 5.1:+28726422 | None:intergenic |
| ATTTCCAACTAACTGAGTCT+TGG | 0.460264 | 5.1:+28726459 | None:intergenic |
| AGACCATGTAGCATACCATT+TGG | 0.480087 | 5.1:-28726602 | MS.gene49602:CDS |
| ACATCCAAGACTCAGTTAGT+TGG | 0.480364 | 5.1:-28726463 | MS.gene49602:CDS |
| TGATTCAGTGCTTGTTGTTG+AGG | 0.481388 | 5.1:+28726704 | None:intergenic |
| TCAAATTGGTCAACACCAAA+TGG | 0.504627 | 5.1:+28726587 | None:intergenic |
| GATATCTTACCTGAATTGGT+TGG | 0.509797 | 5.1:+28726202 | None:intergenic |
| TACCTGAATTGGTTGGTTGG+AGG | 0.522484 | 5.1:+28726209 | None:intergenic |
| TCTTACCTGAATTGGTTGGT+TGG | 0.522970 | 5.1:+28726206 | None:intergenic |
| CAAATGAGAAACATGTTGAT+GGG | 0.525166 | 5.1:-28726280 | MS.gene49602:CDS |
| TTTGACCCTACAACAGATGA+AGG | 0.530476 | 5.1:-28726569 | MS.gene49602:CDS |
| ACTGCAAACTCATCTCAAGT+TGG | 0.533140 | 5.1:-28726674 | MS.gene49602:CDS |
| GGACTTATATTTCTAAGCAT+AGG | 0.547597 | 5.1:-28726638 | MS.gene49602:CDS |
| ACACCAAATGGTATGCTACA+TGG | 0.566997 | 5.1:+28726599 | None:intergenic |
| TGTTGAGGTGTGCAAGATCG+AGG | 0.597835 | 5.1:+28726719 | None:intergenic |
| TATGTGCATGTGAAGCCAGA+AGG | 0.611356 | 5.1:-28726368 | MS.gene49602:CDS |
| ATGGCTTTCCCAATTAATGG+AGG | 0.625289 | 5.1:+28726245 | None:intergenic |
| GTATTATACATCATTTACAG+TGG | 0.633719 | 5.1:-28726516 | MS.gene49602:CDS |
| CAAGATCGAGGGTGTAATTG+TGG | 0.637539 | 5.1:+28726731 | None:intergenic |
| GTTGAGGTGTGCAAGATCGA+GGG | 0.646674 | 5.1:+28726720 | None:intergenic |
| TAGCAGTGACATTAACAGCA+TGG | 0.663737 | 5.1:-28726757 | MS.gene49602:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCCAATAAAGAACAAAATTA+TGG | + | chr5.1:28726579-28726598 | None:intergenic | 20.0% |
| !!! | TCCATAATTTTGTTCTTTAT+TGG | - | chr5.1:28726575-28726594 | MS.gene49602:CDS | 20.0% |
| ! | GAAAATAACATGCATAAAGT+TGG | + | chr5.1:28726557-28726576 | None:intergenic | 25.0% |
| ! | GGATCAATAGTTTCTTTAAT+TGG | - | chr5.1:28726438-28726457 | MS.gene49602:CDS | 25.0% |
| ! | GTATTATACATCATTTACAG+TGG | - | chr5.1:28726460-28726479 | MS.gene49602:CDS | 25.0% |
| ! | TTTATGATCCTCCATTAATT+GGG | - | chr5.1:28726723-28726742 | MS.gene49602:CDS | 25.0% |
| !! | TTTTATGATCCTCCATTAAT+TGG | - | chr5.1:28726722-28726741 | MS.gene49602:CDS | 25.0% |
| AAAATGGCTTTCCCAATTAA+TGG | + | chr5.1:28726737-28726756 | None:intergenic | 30.0% | |
| ACAACAGATGAAGGAAAAAA+AGG | - | chr5.1:28726416-28726435 | MS.gene49602:CDS | 30.0% | |
| CAAATGAGAAACATGTTGAT+GGG | - | chr5.1:28726696-28726715 | MS.gene49602:CDS | 30.0% | |
| CAACAGATGAAGGAAAAAAA+GGG | - | chr5.1:28726417-28726436 | MS.gene49602:CDS | 30.0% | |
| ! | GGACTTATATTTCTAAGCAT+AGG | - | chr5.1:28726338-28726357 | MS.gene49602:CDS | 30.0% |
| ! | TTTTTCCTTCATCTGTTGTA+GGG | + | chr5.1:28726415-28726434 | None:intergenic | 30.0% |
| !! | TAGTATTGCACAAGTTTTAG+TGG | - | chr5.1:28726643-28726662 | MS.gene49602:CDS | 30.0% |
| !!! | CAAGTTGGTTTTCTATTCAT+GGG | - | chr5.1:28726317-28726336 | MS.gene49602:CDS | 30.0% |
| !!! | TCAAGTTGGTTTTCTATTCA+TGG | - | chr5.1:28726316-28726335 | MS.gene49602:CDS | 30.0% |
| !!! | TTTTTTCCTTCATCTGTTGT+AGG | + | chr5.1:28726416-28726435 | None:intergenic | 30.0% |
| ATTTCCAACTAACTGAGTCT+TGG | + | chr5.1:28726520-28726539 | None:intergenic | 35.0% | |
| CCAAATGAGAAACATGTTGA+TGG | - | chr5.1:28726695-28726714 | MS.gene49602:CDS | 35.0% | |
| CCATCAACATGTTTCTCATT+TGG | + | chr5.1:28726698-28726717 | None:intergenic | 35.0% | |
| CTAGAAAAAATGCTTCCTTC+TGG | + | chr5.1:28726626-28726645 | None:intergenic | 35.0% | |
| GACTCAGTTAGTTGGAAATT+TGG | - | chr5.1:28726521-28726540 | MS.gene49602:CDS | 35.0% | |
| TCAAATTGGTCAACACCAAA+TGG | + | chr5.1:28726392-28726411 | None:intergenic | 35.0% | |
| TTTCTAAGCATAGGTTCTTC+AGG | - | chr5.1:28726347-28726366 | MS.gene49602:CDS | 35.0% | |
| ACACCAAATGGTATGCTACA+TGG | + | chr5.1:28726380-28726399 | None:intergenic | 40.0% | |
| ACATCCAAGACTCAGTTAGT+TGG | - | chr5.1:28726513-28726532 | MS.gene49602:CDS | 40.0% | |
| ACTGCAAACTCATCTCAAGT+TGG | - | chr5.1:28726302-28726321 | MS.gene49602:CDS | 40.0% | |
| AGACCATGTAGCATACCATT+TGG | - | chr5.1:28726374-28726393 | MS.gene49602:CDS | 40.0% | |
| ATGGCTTTCCCAATTAATGG+AGG | + | chr5.1:28726734-28726753 | None:intergenic | 40.0% | |
| CATCTGTTGTAGGGTCAAAT+TGG | + | chr5.1:28726406-28726425 | None:intergenic | 40.0% | |
| TAGCAGTGACATTAACAGCA+TGG | - | chr5.1:28726219-28726238 | MS.gene49602:CDS | 40.0% | |
| TTTGACCCTACAACAGATGA+AGG | - | chr5.1:28726407-28726426 | MS.gene49602:CDS | 40.0% | |
| !! | TGATTCAGTGCTTGTTGTTG+AGG | + | chr5.1:28726275-28726294 | None:intergenic | 40.0% |
| !! | TGGAGGTAGCTTTGACAAAA+TGG | + | chr5.1:28726753-28726772 | None:intergenic | 40.0% |
| ACCTCCAACCAACCAATTCA+GGG | - | chr5.1:28726766-28726785 | MS.gene49602:CDS | 45.0% | |
| TACCTCCAACCAACCAATTC+AGG | - | chr5.1:28726765-28726784 | MS.gene49602:CDS | 45.0% | |
| TATGTGCATGTGAAGCCAGA+AGG | - | chr5.1:28726608-28726627 | MS.gene49602:CDS | 45.0% | |
| ! | CAAGATCGAGGGTGTAATTG+TGG | + | chr5.1:28726248-28726267 | None:intergenic | 45.0% |
| GTTGAGGTGTGCAAGATCGA+GGG | + | chr5.1:28726259-28726278 | None:intergenic | 50.0% | |
| TGTTGAGGTGTGCAAGATCG+AGG | + | chr5.1:28726260-28726279 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 28726212 | 28726786 | 28726212 | ID=MS.gene49602 |
| chr5.1 | mRNA | 28726212 | 28726786 | 28726212 | ID=MS.gene49602.t1;Parent=MS.gene49602 |
| chr5.1 | exon | 28726212 | 28726786 | 28726212 | ID=MS.gene49602.t1.exon1;Parent=MS.gene49602.t1 |
| chr5.1 | CDS | 28726212 | 28726786 | 28726212 | ID=cds.MS.gene49602.t1;Parent=MS.gene49602.t1 |
| Gene Sequence |
| Protein sequence |
