Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49887.t1 | P30074.1 | 99.2 | 389 | 3 | 0 | 1 | 389 | 1 | 389 | 5.60E-221 | 776.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49887.t1 | P30074 | 99.2 | 389 | 3 | 0 | 1 | 389 | 1 | 389 | 1.3e-223 | 776.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49887.t1 | G7KR27 | 98.7 | 389 | 5 | 0 | 1 | 389 | 1 | 389 | 7.6e-220 | 772.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049312 | MS.gene49887 | 0.804318 | 2.29E-49 | -1.69E-46 |
| MS.gene050363 | MS.gene49887 | 0.818765 | 1.65E-52 | -1.69E-46 |
| MS.gene050381 | MS.gene49887 | 0.8643 | 1.34E-64 | -1.69E-46 |
| MS.gene050883 | MS.gene49887 | 0.892231 | 1.92E-74 | -1.69E-46 |
| MS.gene051127 | MS.gene49887 | 0.828898 | 6.96E-55 | -1.69E-46 |
| MS.gene05141 | MS.gene49887 | 0.821904 | 3.15E-53 | -1.69E-46 |
| MS.gene05142 | MS.gene49887 | 0.817973 | 2.50E-52 | -1.69E-46 |
| MS.gene051946 | MS.gene49887 | 0.84535 | 4.29E-59 | -1.69E-46 |
| MS.gene053420 | MS.gene49887 | 0.814394 | 1.58E-51 | -1.69E-46 |
| MS.gene053549 | MS.gene49887 | 0.837939 | 3.87E-57 | -1.69E-46 |
| MS.gene053826 | MS.gene49887 | 0.878776 | 2.14E-69 | -1.69E-46 |
| MS.gene054708 | MS.gene49887 | 0.806706 | 7.22E-50 | -1.69E-46 |
| MS.gene055124 | MS.gene49887 | 0.801864 | 7.36E-49 | -1.69E-46 |
| MS.gene055401 | MS.gene49887 | 0.815024 | 1.14E-51 | -1.69E-46 |
| MS.gene055549 | MS.gene49887 | 0.805257 | 1.46E-49 | -1.69E-46 |
| MS.gene055550 | MS.gene49887 | 0.801993 | 6.93E-49 | -1.69E-46 |
| MS.gene055551 | MS.gene49887 | 0.80815 | 3.57E-50 | -1.69E-46 |
| MS.gene056310 | MS.gene49887 | 0.916043 | 2.86E-85 | -1.69E-46 |
| MS.gene056311 | MS.gene49887 | 0.916614 | 1.44E-85 | -1.69E-46 |
| MS.gene056313 | MS.gene49887 | 0.864244 | 1.40E-64 | -1.69E-46 |
| MS.gene056408 | MS.gene49887 | 0.824776 | 6.72E-54 | -1.69E-46 |
| MS.gene056530 | MS.gene49887 | 0.822369 | 2.46E-53 | -1.69E-46 |
| MS.gene057014 | MS.gene49887 | 0.870454 | 1.44E-66 | -1.69E-46 |
| MS.gene058109 | MS.gene49887 | 0.806282 | 8.87E-50 | -1.69E-46 |
| MS.gene058111 | MS.gene49887 | 0.831659 | 1.47E-55 | -1.69E-46 |
| MS.gene058171 | MS.gene49887 | 0.847062 | 1.47E-59 | -1.69E-46 |
| MS.gene058173 | MS.gene49887 | 0.84018 | 1.02E-57 | -1.69E-46 |
| MS.gene058175 | MS.gene49887 | 0.84432 | 8.13E-59 | -1.69E-46 |
| MS.gene058493 | MS.gene49887 | 0.829998 | 3.76E-55 | -1.69E-46 |
| MS.gene058494 | MS.gene49887 | 0.85192 | 6.48E-61 | -1.69E-46 |
| MS.gene058496 | MS.gene49887 | 0.804886 | 1.74E-49 | -1.69E-46 |
| MS.gene058628 | MS.gene49887 | 0.840306 | 9.42E-58 | -1.69E-46 |
| MS.gene058629 | MS.gene49887 | 0.831568 | 1.55E-55 | -1.69E-46 |
| MS.gene058630 | MS.gene49887 | 0.847209 | 1.34E-59 | -1.69E-46 |
| MS.gene05884 | MS.gene49887 | 0.812838 | 3.47E-51 | -1.69E-46 |
| MS.gene059052 | MS.gene49887 | 0.80537 | 1.38E-49 | -1.69E-46 |
| MS.gene059223 | MS.gene49887 | 0.83201 | 1.21E-55 | -1.69E-46 |
| MS.gene059236 | MS.gene49887 | 0.826358 | 2.83E-54 | -1.69E-46 |
| MS.gene060187 | MS.gene49887 | 0.821165 | 4.67E-53 | -1.69E-46 |
| MS.gene060595 | MS.gene49887 | 0.804456 | 2.14E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene49887 | -0.807993 | 3.85E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49887.t1 | MTR_7g016720 | 98.715 | 389 | 5 | 0 | 1 | 389 | 1 | 389 | 0.0 | 797 |
| MS.gene49887.t1 | MTR_7g016700 | 98.201 | 389 | 7 | 0 | 1 | 389 | 1 | 389 | 0.0 | 796 |
| MS.gene49887.t1 | MTR_7g016820 | 98.458 | 389 | 6 | 0 | 1 | 389 | 1 | 389 | 0.0 | 796 |
| MS.gene49887.t1 | MTR_7g016800 | 98.458 | 389 | 6 | 0 | 1 | 389 | 1 | 389 | 0.0 | 796 |
| MS.gene49887.t1 | MTR_7g016780 | 97.943 | 389 | 8 | 0 | 1 | 389 | 1 | 389 | 0.0 | 793 |
| MS.gene49887.t1 | MTR_5g007730 | 97.943 | 389 | 8 | 0 | 1 | 389 | 1 | 389 | 0.0 | 792 |
| MS.gene49887.t1 | MTR_1g098140 | 97.943 | 389 | 8 | 0 | 1 | 389 | 1 | 389 | 0.0 | 792 |
| MS.gene49887.t1 | MTR_1g097935 | 97.686 | 389 | 9 | 0 | 1 | 389 | 1 | 389 | 0.0 | 789 |
| MS.gene49887.t1 | MTR_1g097910 | 97.429 | 389 | 10 | 0 | 1 | 389 | 1 | 389 | 0.0 | 788 |
| MS.gene49887.t1 | MTR_5g007760 | 96.144 | 389 | 15 | 0 | 1 | 389 | 1 | 389 | 0.0 | 781 |
| MS.gene49887.t1 | MTR_5g007717 | 95.887 | 389 | 16 | 0 | 1 | 389 | 1 | 389 | 0.0 | 780 |
| MS.gene49887.t1 | MTR_5g007713 | 95.887 | 389 | 16 | 0 | 1 | 389 | 1 | 389 | 0.0 | 779 |
| MS.gene49887.t1 | MTR_3g083920 | 89.948 | 388 | 39 | 0 | 1 | 388 | 1 | 388 | 0.0 | 744 |
| MS.gene49887.t1 | MTR_3g083910 | 89.433 | 388 | 41 | 0 | 1 | 388 | 1 | 388 | 0.0 | 744 |
| MS.gene49887.t1 | MTR_2g058470 | 86.889 | 389 | 51 | 0 | 1 | 389 | 1 | 389 | 0.0 | 714 |
| MS.gene49887.t1 | MTR_7g084300 | 80.977 | 389 | 74 | 0 | 1 | 389 | 1 | 389 | 0.0 | 677 |
| MS.gene49887.t1 | MTR_3g086260 | 81.443 | 388 | 72 | 0 | 1 | 388 | 1 | 388 | 0.0 | 677 |
| MS.gene49887.t1 | MTR_7g113405 | 95.710 | 303 | 13 | 0 | 87 | 389 | 1 | 303 | 0.0 | 596 |
| MS.gene49887.t1 | MTR_3g088675 | 67.095 | 389 | 128 | 0 | 1 | 389 | 1 | 389 | 0.0 | 582 |
| MS.gene49887.t1 | MTR_5g007740 | 80.061 | 326 | 65 | 0 | 64 | 389 | 1 | 326 | 0.0 | 547 |
| MS.gene49887.t1 | MTR_5g007723 | 68.766 | 397 | 75 | 5 | 12 | 389 | 32 | 398 | 0.0 | 533 |
| MS.gene49887.t1 | MTR_5g007770 | 78.000 | 300 | 33 | 2 | 70 | 369 | 1 | 267 | 7.12e-168 | 470 |
| MS.gene49887.t1 | MTR_3g088670 | 49.231 | 390 | 184 | 6 | 10 | 388 | 2 | 388 | 7.31e-131 | 381 |
| MS.gene49887.t1 | MTR_4g075560 | 42.368 | 380 | 212 | 4 | 11 | 387 | 13 | 388 | 1.32e-102 | 309 |
| MS.gene49887.t1 | MTR_4g078730 | 37.534 | 373 | 226 | 2 | 15 | 387 | 24 | 389 | 1.57e-92 | 283 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49887.t1 | AT5G13930 | 81.959 | 388 | 69 | 1 | 3 | 389 | 8 | 395 | 0.0 | 672 |
| MS.gene49887.t1 | AT4G34850 | 40.584 | 377 | 220 | 3 | 15 | 389 | 18 | 392 | 2.69e-97 | 295 |
| MS.gene49887.t1 | AT4G00040 | 39.286 | 392 | 226 | 6 | 1 | 387 | 1 | 385 | 3.51e-95 | 290 |
| MS.gene49887.t1 | AT1G02050 | 38.560 | 389 | 228 | 6 | 2 | 387 | 12 | 392 | 1.16e-86 | 268 |
| MS.gene49887.t1 | AT4G34850 | 40.000 | 320 | 189 | 2 | 72 | 389 | 1 | 319 | 6.23e-82 | 253 |
| MS.gene49887.t1 | AT3G52160 | 26.141 | 241 | 162 | 9 | 150 | 387 | 97 | 324 | 1.01e-11 | 66.2 |
| MS.gene49887.t1 | AT3G52160 | 26.141 | 241 | 162 | 9 | 150 | 387 | 210 | 437 | 2.61e-11 | 65.5 |
Find 88 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATTACAATTCAATCTTT+TGG | 0.254027 | 7.4:-83325381 | MS.gene49887:CDS |
| AAGTGAGTAATCTTTGATTT+TGG | 0.284045 | 7.4:+83325901 | None:intergenic |
| AGAGAAGTGCTCAGTGAATA+TGG | 0.300231 | 7.4:-83325277 | MS.gene49887:CDS |
| AACCTATATTTGAGATGGTT+TGG | 0.308691 | 7.4:-83325558 | MS.gene49887:CDS |
| CTTGTTGGACAAGCACTATT+TGG | 0.314421 | 7.4:-83325634 | MS.gene49887:CDS |
| TCAATGGCTCCTTCGCTATC+AGG | 0.316229 | 7.4:+83325517 | None:intergenic |
| TATCAACTCACCAAACTCTT+AGG | 0.335572 | 7.4:-83325835 | MS.gene49887:CDS |
| GCTTCGTTTGGCTAAAGATT+TGG | 0.342769 | 7.4:-83325749 | MS.gene49887:CDS |
| TCTACTTGATCTAGAATTGC+AGG | 0.346751 | 7.4:+83325340 | None:intergenic |
| TGAATACATGGCACCTTCAT+TGG | 0.347646 | 7.4:-83326007 | MS.gene49887:CDS |
| CTTTGTTCAACACAATTTGC+TGG | 0.349776 | 7.4:+83326496 | None:intergenic |
| CACCTTCTTAAAGATGTTCC+TGG | 0.385004 | 7.4:-83325463 | MS.gene49887:CDS |
| TGGGGTGTATTGTTTGGTTT+CGG | 0.396628 | 7.4:-83325160 | MS.gene49887:CDS |
| GGAGCTGCTGCTCTTATTGT+TGG | 0.402654 | 7.4:-83325607 | MS.gene49887:CDS |
| GAGTTTGGTGAGTTGATAAT+CGG | 0.404976 | 7.4:+83325840 | None:intergenic |
| AGGTGGCACGGTGCTTCGTT+TGG | 0.407834 | 7.4:-83325761 | MS.gene49887:CDS |
| CTTGAATGGGGTGTATTGTT+TGG | 0.418771 | 7.4:-83325166 | MS.gene49887:CDS |
| GCCATGTATTCACAAACATT+AGG | 0.420204 | 7.4:+83326018 | None:intergenic |
| CCAATGGCCAAGATAGTTGC+AGG | 0.424125 | 7.4:+83326529 | None:intergenic |
| CACCTGCAAAACACCCTTGT+TGG | 0.425276 | 7.4:+83325779 | None:intergenic |
| ACTCACTTGGACAGCCTTGT+TGG | 0.426712 | 7.4:-83325649 | MS.gene49887:CDS |
| GGTTGAGGCTTTCGAGCCAT+TGG | 0.428986 | 7.4:-83325410 | MS.gene49887:CDS |
| CAAGAAGGATTGAAGACAAC+AGG | 0.432547 | 7.4:-83325196 | MS.gene49887:CDS |
| GTCCAAACCATCTCAAATAT+AGG | 0.437103 | 7.4:+83325556 | None:intergenic |
| AACAGGAGAAGGACTTGAAT+GGG | 0.444037 | 7.4:-83325179 | MS.gene49887:CDS |
| TGGGCGAAGACCTAAGAGTT+TGG | 0.450749 | 7.4:+83325825 | None:intergenic |
| AGAAGGTCCTGCAACTATCT+TGG | 0.450898 | 7.4:-83326536 | MS.gene49887:CDS |
| TTCACGAAGGTGACCGTCAA+TGG | 0.457763 | 7.4:+83325501 | None:intergenic |
| GCGCAAAACAACCGTTTCAA+TGG | 0.461439 | 7.4:+83325126 | None:intergenic |
| GACGGTCACCTTCGTGAAGC+TGG | 0.468151 | 7.4:-83325496 | MS.gene49887:CDS |
| AGTGAAGGCTATAAAAGAAT+GGG | 0.468743 | 7.4:-83325929 | MS.gene49887:CDS |
| GCAAGACATGGTGGTGGTAG+AGG | 0.469468 | 7.4:-83325977 | MS.gene49887:CDS |
| CATGTATCTCCTCTTGATCA+TGG | 0.469562 | 7.4:+83326071 | None:intergenic |
| GTATTGTTTGGTTTCGGACC+AGG | 0.474083 | 7.4:-83325154 | MS.gene49887:CDS |
| AAAGAACATTACTAAAGCAT+TGG | 0.475145 | 7.4:-83325431 | MS.gene49887:CDS |
| GTTGAGGCTTTCGAGCCATT+GGG | 0.477937 | 7.4:-83325409 | MS.gene49887:CDS |
| AAATAATTAAGCATCTCATA+TGG | 0.479634 | 7.4:+83325096 | None:intergenic |
| CTGTCCAAGTGAGTATCACT+AGG | 0.483602 | 7.4:+83325658 | None:intergenic |
| ACCTTCTTAAAGATGTTCCT+GGG | 0.484500 | 7.4:-83325462 | MS.gene49887:CDS |
| TCCTAATGTTTGTGAATACA+TGG | 0.493180 | 7.4:-83326019 | MS.gene49887:CDS |
| GTCACCGCTGTCACATTTCG+TGG | 0.493936 | 7.4:-83325682 | MS.gene49887:CDS |
| CAGTGAAGGCTATAAAAGAA+TGG | 0.502364 | 7.4:-83325930 | MS.gene49887:CDS |
| CAACAGGAGAAGGACTTGAA+TGG | 0.502457 | 7.4:-83325180 | MS.gene49887:CDS |
| GTCTTCGCCCATATGTGAAA+AGG | 0.504788 | 7.4:-83325813 | MS.gene49887:CDS |
| TGAGAAACCTATATTTGAGA+TGG | 0.507221 | 7.4:-83325563 | MS.gene49887:CDS |
| ACAAGTGGTGTCGACATGCC+TGG | 0.510677 | 7.4:-83325865 | MS.gene49887:CDS |
| ACCAGGACTTACCATTGAAA+CGG | 0.513761 | 7.4:-83325137 | MS.gene49887:CDS |
| GTGAGTTGATAATCGGCTCC+AGG | 0.515720 | 7.4:+83325847 | None:intergenic |
| ACCGTTTCAATGGTAAGTCC+TGG | 0.536054 | 7.4:+83325136 | None:intergenic |
| AGGGAAGGAGGCTGCAGTGA+AGG | 0.537534 | 7.4:-83325944 | MS.gene49887:CDS |
| TCTAGAATTGCAGGTCCACC+AGG | 0.538674 | 7.4:+83325349 | None:intergenic |
| CATTACTAAAGCATTGGTTG+AGG | 0.542552 | 7.4:-83325425 | MS.gene49887:CDS |
| AGAAAGAAATCAACTCAAGA+AGG | 0.548629 | 7.4:-83325211 | MS.gene49887:CDS |
| TCCCAGGAACATCTTTAAGA+AGG | 0.550142 | 7.4:+83325461 | None:intergenic |
| ATGTTCTTTGAAACAATCCC+AGG | 0.550779 | 7.4:+83325445 | None:intergenic |
| TGCTGGATTTGCAGTGCCAA+TGG | 0.555118 | 7.4:+83326513 | None:intergenic |
| GTGGTAGAGGTACCTAGACT+AGG | 0.557229 | 7.4:-83325964 | MS.gene49887:CDS |
| TCTTGCCTTGCATCCAATGA+AGG | 0.559885 | 7.4:+83325994 | None:intergenic |
| GGACAAGCACTATTTGGAGA+TGG | 0.563405 | 7.4:-83325628 | MS.gene49887:CDS |
| CAAATAGTGCTTGTCCAACA+AGG | 0.572762 | 7.4:+83325635 | None:intergenic |
| GGATTGAAGACAACAGGAGA+AGG | 0.573266 | 7.4:-83325190 | MS.gene49887:CDS |
| GCAGCCTCCTTCCCTAGTCT+AGG | 0.573798 | 7.4:+83325952 | None:intergenic |
| CCTGCAACTATCTTGGCCAT+TGG | 0.574132 | 7.4:-83326529 | MS.gene49887:CDS |
| GATAGCGAAGGAGCCATTGA+CGG | 0.576182 | 7.4:-83325514 | MS.gene49887:CDS |
| AGGCATGTCGACACCACTTG+TGG | 0.578425 | 7.4:+83325867 | None:intergenic |
| TGGCACCTTCATTGGATGCA+AGG | 0.580252 | 7.4:-83325999 | MS.gene49887:CDS |
| GTGATAAATCCATGATCAAG+AGG | 0.584564 | 7.4:-83326080 | MS.gene49887:CDS |
| TTAATCGTTTGCACCACAAG+TGG | 0.591579 | 7.4:-83325880 | MS.gene49887:CDS |
| TGTGTTGGTTGTTTGTTCTG+AGG | 0.596318 | 7.4:-83325704 | MS.gene49887:CDS |
| CGTAAAGCTCAAAGAGCAGA+AGG | 0.599601 | 7.4:-83326553 | MS.gene49887:CDS |
| AGAGGTACCTAGACTAGGGA+AGG | 0.600145 | 7.4:-83325959 | MS.gene49887:CDS |
| TGGCCCTAGTGATACTCACT+TGG | 0.605912 | 7.4:-83325662 | MS.gene49887:CDS |
| TGGTAGAGGTACCTAGACTA+GGG | 0.618791 | 7.4:-83325963 | MS.gene49887:CDS |
| CAACAAAGGTGCTCGTGTGT+TGG | 0.620198 | 7.4:-83325719 | MS.gene49887:CDS |
| ATTGGATGCAAGGCAAGACA+TGG | 0.621464 | 7.4:-83325989 | MS.gene49887:CDS |
| GGTACCTAGACTAGGGAAGG+AGG | 0.631813 | 7.4:-83325956 | MS.gene49887:CDS |
| ACAATTGCTCCTGATAGCGA+AGG | 0.640943 | 7.4:-83325526 | MS.gene49887:CDS |
| TTGTAATCAGAAATTCCCAA+TGG | 0.643403 | 7.4:+83325394 | None:intergenic |
| GGTACATGATGTACCAACAA+GGG | 0.652620 | 7.4:-83325792 | MS.gene49887:CDS |
| TGTCCAAGTGAGTATCACTA+GGG | 0.674277 | 7.4:+83325659 | None:intergenic |
| AGGTACATGATGTACCAACA+AGG | 0.675679 | 7.4:-83325793 | MS.gene49887:CDS |
| TGCAAGGCAAGACATGGTGG+TGG | 0.676603 | 7.4:-83325983 | MS.gene49887:CDS |
| GTGAAGGCTATAAAAGAATG+GGG | 0.681481 | 7.4:-83325928 | MS.gene49887:CDS |
| GATTTGGCTGAGAACAACAA+AGG | 0.683242 | 7.4:-83325733 | MS.gene49887:CDS |
| ATGTTAGTCCAGCTTCACGA+AGG | 0.698828 | 7.4:+83325488 | None:intergenic |
| ACAGGAGAAGGACTTGAATG+GGG | 0.714424 | 7.4:-83325178 | MS.gene49887:CDS |
| GGATGCAAGGCAAGACATGG+TGG | 0.736388 | 7.4:-83325986 | MS.gene49887:CDS |
| AGGGCCACGAAATGTGACAG+CGG | 0.772653 | 7.4:+83325678 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAAATATGATAAATAG+AGG | + | chr7.4:83325306-83325325 | None:intergenic | 10.0% |
| !! | AAAACCAATCAAATAATAAT+TGG | + | chr7.4:83325534-83325553 | None:intergenic | 15.0% |
| !! | AAGAATACATATATTTGAAA+TGG | + | chr7.4:83325422-83325441 | None:intergenic | 15.0% |
| !!! | AATTATTATTTGATTGGTTT+TGG | - | chr7.4:83325533-83325552 | MS.gene49887:CDS | 15.0% |
| !!! | GTGATTTTAAAATAAAAATC+AGG | + | chr7.4:83325222-83325241 | None:intergenic | 15.0% |
| !!! | AATATAGGTTTCTCAATTTT+TGG | + | chr7.4:83326117-83326136 | None:intergenic | 20.0% |
| !!! | TAGTGTTTTTTTATGTGAAA+TGG | - | chr7.4:83325373-83325392 | MS.gene49887:CDS | 20.0% |
| !!! | TGATATCAGTAAACAATTTT+AGG | + | chr7.4:83325565-83325584 | None:intergenic | 20.0% |
| ! | AAAGAACATTACTAAAGCAT+TGG | - | chr7.4:83326254-83326273 | MS.gene49887:intron | 25.0% |
| ! | CATTTCTTTATAACTACTTC+AGG | - | chr7.4:83325583-83325602 | MS.gene49887:CDS | 25.0% |
| ! | GAGACCAATTATTATTTGAT+TGG | - | chr7.4:83325527-83325546 | MS.gene49887:CDS | 25.0% |
| !! | CTGATTACAATTCAATCTTT+TGG | - | chr7.4:83326304-83326323 | MS.gene49887:intron | 25.0% |
| !!! | AAGTGAGTAATCTTTGATTT+TGG | + | chr7.4:83325787-83325806 | None:intergenic | 25.0% |
| !!! | ATAATTGGTCTCTTTTTTTC+TGG | + | chr7.4:83325519-83325538 | None:intergenic | 25.0% |
| AGAAAGAAATCAACTCAAGA+AGG | - | chr7.4:83326474-83326493 | MS.gene49887:CDS | 30.0% | |
| AGTGAAGGCTATAAAAGAAT+GGG | - | chr7.4:83325756-83325775 | MS.gene49887:CDS | 30.0% | |
| TCCTAATGTTTGTGAATACA+TGG | - | chr7.4:83325666-83325685 | MS.gene49887:CDS | 30.0% | |
| TGAGAAACCTATATTTGAGA+TGG | - | chr7.4:83326122-83326141 | MS.gene49887:intron | 30.0% | |
| TTGTAATCAGAAATTCCCAA+TGG | + | chr7.4:83326294-83326313 | None:intergenic | 30.0% | |
| ! | AACCTATATTTGAGATGGTT+TGG | - | chr7.4:83326127-83326146 | MS.gene49887:intron | 30.0% |
| ! | ATCATGTACCTTTTCACATA+TGG | + | chr7.4:83325883-83325902 | None:intergenic | 30.0% |
| ! | TCATGTACCTTTTCACATAT+GGG | + | chr7.4:83325882-83325901 | None:intergenic | 30.0% |
| !!! | GTTTCTCAATTTTTGGTACT+GGG | + | chr7.4:83326110-83326129 | None:intergenic | 30.0% |
| !!! | TGCATGTGTTTTGTTTATCT+TGG | - | chr7.4:83326443-83326462 | MS.gene49887:CDS | 30.0% |
| ACCTTCTTAAAGATGTTCCT+GGG | - | chr7.4:83326223-83326242 | MS.gene49887:intron | 35.0% | |
| CAGTGAAGGCTATAAAAGAA+TGG | - | chr7.4:83325755-83325774 | MS.gene49887:CDS | 35.0% | |
| CTTTGTTCAACACAATTTGC+TGG | + | chr7.4:83325192-83325211 | None:intergenic | 35.0% | |
| GCCATGTATTCACAAACATT+AGG | + | chr7.4:83325670-83325689 | None:intergenic | 35.0% | |
| GTCCAAACCATCTCAAATAT+AGG | + | chr7.4:83326132-83326151 | None:intergenic | 35.0% | |
| GTGAAGGCTATAAAAGAATG+GGG | - | chr7.4:83325757-83325776 | MS.gene49887:CDS | 35.0% | |
| GTGATAAATCCATGATCAAG+AGG | - | chr7.4:83325605-83325624 | MS.gene49887:CDS | 35.0% | |
| TATCAACTCACCAAACTCTT+AGG | - | chr7.4:83325850-83325869 | MS.gene49887:CDS | 35.0% | |
| TGAAATGGAACCTAGAAAAG+TGG | + | chr7.4:83325407-83325426 | None:intergenic | 35.0% | |
| ! | CTAGTTGCATTCATCTTTTG+AGG | + | chr7.4:83326390-83326409 | None:intergenic | 35.0% |
| ! | TCTACTTGATCTAGAATTGC+AGG | + | chr7.4:83326348-83326367 | None:intergenic | 35.0% |
| !! | ATGTTCTTTGAAACAATCCC+AGG | + | chr7.4:83326243-83326262 | None:intergenic | 35.0% |
| !! | CATTACTAAAGCATTGGTTG+AGG | - | chr7.4:83326260-83326279 | MS.gene49887:intron | 35.0% |
| !! | GAGTTTGGTGAGTTGATAAT+CGG | + | chr7.4:83325848-83325867 | None:intergenic | 35.0% |
| !! | GGACTAATTACCACTTTTCT+AGG | - | chr7.4:83325394-83325413 | MS.gene49887:CDS | 35.0% |
| !!! | ATTCATCTTTTGAGGCTTCA+AGG | + | chr7.4:83326382-83326401 | None:intergenic | 35.0% |
| !!! | GGTTTCTCAATTTTTGGTAC+TGG | + | chr7.4:83326111-83326130 | None:intergenic | 35.0% |
| AACAGGAGAAGGACTTGAAT+GGG | - | chr7.4:83326506-83326525 | MS.gene49887:CDS | 40.0% | |
| ACCAGGACTTACCATTGAAA+CGG | - | chr7.4:83326548-83326567 | MS.gene49887:CDS | 40.0% | |
| AGGTACATGATGTACCAACA+AGG | - | chr7.4:83325892-83325911 | MS.gene49887:CDS | 40.0% | |
| CAAATAGTGCTTGTCCAACA+AGG | + | chr7.4:83326053-83326072 | None:intergenic | 40.0% | |
| CAAGAAGGATTGAAGACAAC+AGG | - | chr7.4:83326489-83326508 | MS.gene49887:CDS | 40.0% | |
| CACCTTCTTAAAGATGTTCC+TGG | - | chr7.4:83326222-83326241 | MS.gene49887:intron | 40.0% | |
| CATGTATCTCCTCTTGATCA+TGG | + | chr7.4:83325617-83325636 | None:intergenic | 40.0% | |
| CTTGAATGGGGTGTATTGTT+TGG | - | chr7.4:83326519-83326538 | MS.gene49887:CDS | 40.0% | |
| CTTGTTGGACAAGCACTATT+TGG | - | chr7.4:83326051-83326070 | MS.gene49887:CDS | 40.0% | |
| GATTTGGCTGAGAACAACAA+AGG | - | chr7.4:83325952-83325971 | MS.gene49887:CDS | 40.0% | |
| GCTTCGTTTGGCTAAAGATT+TGG | - | chr7.4:83325936-83325955 | MS.gene49887:CDS | 40.0% | |
| GGTACATGATGTACCAACAA+GGG | - | chr7.4:83325893-83325912 | MS.gene49887:CDS | 40.0% | |
| TGAATACATGGCACCTTCAT+TGG | - | chr7.4:83325678-83325697 | MS.gene49887:CDS | 40.0% | |
| TGTCCAAGTGAGTATCACTA+GGG | + | chr7.4:83326029-83326048 | None:intergenic | 40.0% | |
| TTAATCGTTTGCACCACAAG+TGG | - | chr7.4:83325805-83325824 | MS.gene49887:CDS | 40.0% | |
| ! | ATCTTTTGGATTGCACATCC+TGG | - | chr7.4:83326318-83326337 | MS.gene49887:intron | 40.0% |
| ! | TCCCAGGAACATCTTTAAGA+AGG | + | chr7.4:83326227-83326246 | None:intergenic | 40.0% |
| ! | TGGGGTGTATTGTTTGGTTT+CGG | - | chr7.4:83326525-83326544 | MS.gene49887:CDS | 40.0% |
| !! | AGAGAAGTGCTCAGTGAATA+TGG | - | chr7.4:83326408-83326427 | MS.gene49887:intron | 40.0% |
| !! | TGTGTTGGTTGTTTGTTCTG+AGG | - | chr7.4:83325981-83326000 | MS.gene49887:CDS | 40.0% |
| ACAGGAGAAGGACTTGAATG+GGG | - | chr7.4:83326507-83326526 | MS.gene49887:CDS | 45.0% | |
| ACCGTTTCAATGGTAAGTCC+TGG | + | chr7.4:83326552-83326571 | None:intergenic | 45.0% | |
| AGAAGGTCCTGCAACTATCT+TGG | - | chr7.4:83325149-83325168 | MS.gene49887:CDS | 45.0% | |
| ATGTTAGTCCAGCTTCACGA+AGG | + | chr7.4:83326200-83326219 | None:intergenic | 45.0% | |
| ATTGGATGCAAGGCAAGACA+TGG | - | chr7.4:83325696-83325715 | MS.gene49887:CDS | 45.0% | |
| CAACAGGAGAAGGACTTGAA+TGG | - | chr7.4:83326505-83326524 | MS.gene49887:CDS | 45.0% | |
| CGTAAAGCTCAAAGAGCAGA+AGG | - | chr7.4:83325132-83325151 | MS.gene49887:CDS | 45.0% | |
| CTGTCCAAGTGAGTATCACT+AGG | + | chr7.4:83326030-83326049 | None:intergenic | 45.0% | |
| GCGCAAAACAACCGTTTCAA+TGG | + | chr7.4:83326562-83326581 | None:intergenic | 45.0% | |
| GGACAAGCACTATTTGGAGA+TGG | - | chr7.4:83326057-83326076 | MS.gene49887:CDS | 45.0% | |
| GGATTGAAGACAACAGGAGA+AGG | - | chr7.4:83326495-83326514 | MS.gene49887:CDS | 45.0% | |
| GTCTTCGCCCATATGTGAAA+AGG | - | chr7.4:83325872-83325891 | MS.gene49887:CDS | 45.0% | |
| TCTTGCCTTGCATCCAATGA+AGG | + | chr7.4:83325694-83325713 | None:intergenic | 45.0% | |
| ! | ACAATTGCTCCTGATAGCGA+AGG | - | chr7.4:83326159-83326178 | MS.gene49887:intron | 45.0% |
| ! | GTATTGTTTGGTTTCGGACC+AGG | - | chr7.4:83326531-83326550 | MS.gene49887:CDS | 45.0% |
| ! | TTTTGGATTGCACATCCTGG+TGG | - | chr7.4:83326321-83326340 | MS.gene49887:intron | 45.0% |
| !! | TGGTAGAGGTACCTAGACTA+GGG | - | chr7.4:83325722-83325741 | MS.gene49887:CDS | 45.0% |
| !!! | TACCAACAAGGGTGTTTTGC+AGG | - | chr7.4:83325904-83325923 | MS.gene49887:CDS | 45.0% |
| CACCTGCAAAACACCCTTGT+TGG | + | chr7.4:83325909-83325928 | None:intergenic | 50.0% | |
| CCAATGGCCAAGATAGTTGC+AGG | + | chr7.4:83325159-83325178 | None:intergenic | 50.0% | |
| CCTGCAACTATCTTGGCCAT+TGG | - | chr7.4:83325156-83325175 | MS.gene49887:CDS | 50.0% | |
| GATAGCGAAGGAGCCATTGA+CGG | - | chr7.4:83326171-83326190 | MS.gene49887:intron | 50.0% | |
| GGAGCTGCTGCTCTTATTGT+TGG | - | chr7.4:83326078-83326097 | MS.gene49887:CDS | 50.0% | |
| GTTGAGGCTTTCGAGCCATT+GGG | - | chr7.4:83326276-83326295 | MS.gene49887:intron | 50.0% | |
| TCAATGGCTCCTTCGCTATC+AGG | + | chr7.4:83326171-83326190 | None:intergenic | 50.0% | |
| TGCTGGATTTGCAGTGCCAA+TGG | + | chr7.4:83325175-83325194 | None:intergenic | 50.0% | |
| TGGCACCTTCATTGGATGCA+AGG | - | chr7.4:83325686-83325705 | MS.gene49887:CDS | 50.0% | |
| TGGCCCTAGTGATACTCACT+TGG | - | chr7.4:83326023-83326042 | MS.gene49887:CDS | 50.0% | |
| TGGGCGAAGACCTAAGAGTT+TGG | + | chr7.4:83325863-83325882 | None:intergenic | 50.0% | |
| TTCACGAAGGTGACCGTCAA+TGG | + | chr7.4:83326187-83326206 | None:intergenic | 50.0% | |
| ! | ACTCACTTGGACAGCCTTGT+TGG | - | chr7.4:83326036-83326055 | MS.gene49887:CDS | 50.0% |
| ! | TCTAGAATTGCAGGTCCACC+AGG | + | chr7.4:83326339-83326358 | None:intergenic | 50.0% |
| !! | AGAGGTACCTAGACTAGGGA+AGG | - | chr7.4:83325726-83325745 | MS.gene49887:CDS | 50.0% |
| !! | CAACAAAGGTGCTCGTGTGT+TGG | - | chr7.4:83325966-83325985 | MS.gene49887:CDS | 50.0% |
| !! | GTGAGTTGATAATCGGCTCC+AGG | + | chr7.4:83325841-83325860 | None:intergenic | 50.0% |
| !! | GTGGTAGAGGTACCTAGACT+AGG | - | chr7.4:83325721-83325740 | MS.gene49887:CDS | 50.0% |
| !!! | CAACAAGGGTGTTTTGCAGG+TGG | - | chr7.4:83325907-83325926 | MS.gene49887:CDS | 50.0% |
| AGGCATGTCGACACCACTTG+TGG | + | chr7.4:83325821-83325840 | None:intergenic | 55.0% | |
| AGGGCCACGAAATGTGACAG+CGG | + | chr7.4:83326010-83326029 | None:intergenic | 55.0% | |
| GGATGCAAGGCAAGACATGG+TGG | - | chr7.4:83325699-83325718 | MS.gene49887:CDS | 55.0% | |
| GGTACCTAGACTAGGGAAGG+AGG | - | chr7.4:83325729-83325748 | MS.gene49887:CDS | 55.0% | |
| GGTTGAGGCTTTCGAGCCAT+TGG | - | chr7.4:83326275-83326294 | MS.gene49887:intron | 55.0% | |
| GTCACCGCTGTCACATTTCG+TGG | - | chr7.4:83326003-83326022 | MS.gene49887:CDS | 55.0% | |
| TGCAAGGCAAGACATGGTGG+TGG | - | chr7.4:83325702-83325721 | MS.gene49887:CDS | 55.0% | |
| !! | ACAAGTGGTGTCGACATGCC+TGG | - | chr7.4:83325820-83325839 | MS.gene49887:CDS | 55.0% |
| !! | AGGGTGTTTTGCAGGTGGCA+CGG | - | chr7.4:83325912-83325931 | MS.gene49887:CDS | 55.0% |
| !! | GCAAGACATGGTGGTGGTAG+AGG | - | chr7.4:83325708-83325727 | MS.gene49887:CDS | 55.0% |
| AGGGAAGGAGGCTGCAGTGA+AGG | - | chr7.4:83325741-83325760 | MS.gene49887:CDS | 60.0% | |
| AGGTGGCACGGTGCTTCGTT+TGG | - | chr7.4:83325924-83325943 | MS.gene49887:CDS | 60.0% | |
| GACGGTCACCTTCGTGAAGC+TGG | - | chr7.4:83326189-83326208 | MS.gene49887:intron | 60.0% | |
| GCAGCCTCCTTCCCTAGTCT+AGG | + | chr7.4:83325736-83325755 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 83325111 | 83326596 | 83325111 | ID=MS.gene49887 |
| chr7.4 | mRNA | 83325111 | 83326596 | 83325111 | ID=MS.gene49887.t1;Parent=MS.gene49887 |
| chr7.4 | exon | 83326419 | 83326596 | 83326419 | ID=MS.gene49887.t1.exon1;Parent=MS.gene49887.t1 |
| chr7.4 | CDS | 83326419 | 83326596 | 83326419 | ID=cds.MS.gene49887.t1;Parent=MS.gene49887.t1 |
| chr7.4 | exon | 83325111 | 83326102 | 83325111 | ID=MS.gene49887.t1.exon2;Parent=MS.gene49887.t1 |
| chr7.4 | CDS | 83325111 | 83326102 | 83325111 | ID=cds.MS.gene49887.t1;Parent=MS.gene49887.t1 |
| Gene Sequence |
| Protein sequence |
