Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50826.t1 | XP_003597997.1 | 87 | 355 | 2 | 1 | 1 | 311 | 1 | 355 | 1.40E-161 | 578.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50826.t1 | Q8L4R0 | 77.4 | 297 | 66 | 1 | 16 | 311 | 54 | 350 | 6.5e-128 | 458.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50826.t1 | G7IYB6 | 87.0 | 355 | 2 | 1 | 1 | 311 | 1 | 355 | 9.9e-162 | 578.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene50826 | 0.832349 | 9.95E-56 | -1.69E-46 |
| MS.gene049369 | MS.gene50826 | 0.812207 | 4.76E-51 | -1.69E-46 |
| MS.gene049427 | MS.gene50826 | 0.813536 | 2.44E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene50826 | 0.800001 | 1.77E-48 | -1.69E-46 |
| MS.gene049907 | MS.gene50826 | 0.804004 | 2.66E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene50826 | 0.805419 | 1.35E-49 | -1.69E-46 |
| MS.gene050432 | MS.gene50826 | 0.806828 | 6.80E-50 | -1.69E-46 |
| MS.gene050507 | MS.gene50826 | 0.801125 | 1.04E-48 | -1.69E-46 |
| MS.gene050670 | MS.gene50826 | 0.809211 | 2.12E-50 | -1.69E-46 |
| MS.gene050812 | MS.gene50826 | 0.800619 | 1.32E-48 | -1.69E-46 |
| MS.gene05105 | MS.gene50826 | 0.831138 | 1.98E-55 | -1.69E-46 |
| MS.gene051360 | MS.gene50826 | 0.831362 | 1.74E-55 | -1.69E-46 |
| MS.gene051666 | MS.gene50826 | 0.810248 | 1.27E-50 | -1.69E-46 |
| MS.gene051692 | MS.gene50826 | 0.807237 | 5.57E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene50826 | 0.841791 | 3.84E-58 | -1.69E-46 |
| MS.gene052481 | MS.gene50826 | 0.811458 | 6.93E-51 | -1.69E-46 |
| MS.gene052484 | MS.gene50826 | 0.834594 | 2.74E-56 | -1.69E-46 |
| MS.gene052485 | MS.gene50826 | 0.830234 | 3.29E-55 | -1.69E-46 |
| MS.gene053207 | MS.gene50826 | 0.844462 | 7.45E-59 | -1.69E-46 |
| MS.gene053209 | MS.gene50826 | 0.844487 | 7.33E-59 | -1.69E-46 |
| MS.gene053632 | MS.gene50826 | 0.803331 | 3.67E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene50826 | 0.824488 | 7.85E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene50826 | 0.816487 | 5.39E-52 | -1.69E-46 |
| MS.gene055412 | MS.gene50826 | 0.832472 | 9.27E-56 | -1.69E-46 |
| MS.gene055499 | MS.gene50826 | 0.812 | 5.28E-51 | -1.69E-46 |
| MS.gene055633 | MS.gene50826 | 0.809384 | 1.94E-50 | -1.69E-46 |
| MS.gene055722 | MS.gene50826 | 0.815383 | 9.51E-52 | -1.69E-46 |
| MS.gene05602 | MS.gene50826 | 0.807157 | 5.80E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene50826 | 0.805593 | 1.24E-49 | -1.69E-46 |
| MS.gene056410 | MS.gene50826 | 0.833365 | 5.56E-56 | -1.69E-46 |
| MS.gene056449 | MS.gene50826 | 0.800865 | 1.18E-48 | -1.69E-46 |
| MS.gene056609 | MS.gene50826 | 0.812734 | 3.65E-51 | -1.69E-46 |
| MS.gene056611 | MS.gene50826 | 0.80207 | 6.68E-49 | -1.69E-46 |
| MS.gene056659 | MS.gene50826 | 0.80211 | 6.55E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene50826 | 0.817204 | 3.72E-52 | -1.69E-46 |
| MS.gene056897 | MS.gene50826 | 0.861928 | 7.27E-64 | -1.69E-46 |
| MS.gene057124 | MS.gene50826 | 0.829567 | 4.79E-55 | -1.69E-46 |
| MS.gene057129 | MS.gene50826 | 0.806055 | 9.90E-50 | -1.69E-46 |
| MS.gene057823 | MS.gene50826 | 0.800979 | 1.12E-48 | -1.69E-46 |
| MS.gene058082 | MS.gene50826 | 0.85769 | 1.37E-62 | -1.69E-46 |
| MS.gene058293 | MS.gene50826 | 0.819599 | 1.07E-52 | -1.69E-46 |
| MS.gene058365 | MS.gene50826 | 0.827508 | 1.51E-54 | -1.69E-46 |
| MS.gene058660 | MS.gene50826 | 0.811034 | 8.57E-51 | -1.69E-46 |
| MS.gene058748 | MS.gene50826 | 0.925564 | 1.55E-90 | -1.69E-46 |
| MS.gene058787 | MS.gene50826 | 0.844379 | 7.84E-59 | -1.69E-46 |
| MS.gene058948 | MS.gene50826 | 0.861252 | 1.17E-63 | -1.69E-46 |
| MS.gene059536 | MS.gene50826 | 0.806792 | 6.93E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene50826 | 0.831102 | 2.02E-55 | -1.69E-46 |
| MS.gene059688 | MS.gene50826 | 0.835866 | 1.31E-56 | -1.69E-46 |
| MS.gene059692 | MS.gene50826 | 0.836075 | 1.16E-56 | -1.69E-46 |
| MS.gene059695 | MS.gene50826 | 0.841072 | 5.93E-58 | -1.69E-46 |
| MS.gene059960 | MS.gene50826 | 0.802054 | 6.73E-49 | -1.69E-46 |
| MS.gene060356 | MS.gene50826 | 0.80753 | 4.83E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene50826 | 0.80712 | 5.90E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene50826 | 0.828767 | 7.49E-55 | -1.69E-46 |
| MS.gene061051 | MS.gene50826 | -0.801472 | 8.86E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene50826 | 0.815257 | 1.01E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50826.t1 | MTR_3g005100 | 87.042 | 355 | 2 | 1 | 1 | 311 | 1 | 355 | 0.0 | 605 |
| MS.gene50826.t1 | MTR_3g008040 | 73.256 | 344 | 28 | 5 | 1 | 311 | 228 | 540 | 3.23e-161 | 460 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50826.t1 | AT1G19800 | 77.441 | 297 | 66 | 1 | 16 | 311 | 54 | 350 | 2.34e-171 | 479 |
| MS.gene50826.t1 | AT1G19800 | 77.441 | 297 | 66 | 1 | 16 | 311 | 54 | 350 | 2.34e-171 | 479 |
| MS.gene50826.t1 | AT1G19800 | 77.441 | 297 | 66 | 1 | 16 | 311 | 54 | 350 | 2.34e-171 | 479 |
| MS.gene50826.t1 | AT1G19800 | 77.441 | 297 | 66 | 1 | 16 | 311 | 54 | 350 | 2.34e-171 | 479 |
| MS.gene50826.t1 | AT1G19800 | 77.441 | 297 | 66 | 1 | 16 | 311 | 54 | 350 | 2.34e-171 | 479 |
| MS.gene50826.t1 | AT1G19800 | 77.441 | 297 | 66 | 1 | 16 | 311 | 54 | 350 | 2.34e-171 | 479 |
Find 85 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAACAAATTGACACATTA+AGG | 0.141685 | 3.4:+865031 | MS.gene50826:CDS |
| ATATATTCTGCTTCTCTTGC+AGG | 0.215146 | 3.4:+864340 | MS.gene50826:CDS |
| CACCCATGTTTCTCAGTAAT+TGG | 0.245755 | 3.4:+864665 | MS.gene50826:CDS |
| CTACTCGCCGATGGTGTTTA+TGG | 0.268277 | 3.4:+865168 | MS.gene50826:CDS |
| ATTGACACATTAAGGGTTCT+TGG | 0.272812 | 3.4:+865039 | MS.gene50826:CDS |
| AATTAGCATTAACATTATAT+TGG | 0.273273 | 3.4:+865191 | MS.gene50826:CDS |
| TGTTGTTTCTTCCAAGGAGC+TGG | 0.299987 | 3.4:+865414 | MS.gene50826:CDS |
| GCTGTTGTGATTTCTCTTGT+TGG | 0.309665 | 3.4:+865363 | MS.gene50826:CDS |
| ATCAGACCCTGTTGATTATC+TGG | 0.348729 | 3.4:+865062 | MS.gene50826:CDS |
| ATCTATTGTGAGCTGTGCTT+GGG | 0.352418 | 3.4:+865290 | MS.gene50826:CDS |
| GGGTGACCATCATCTGTGTT+AGG | 0.360772 | 3.4:-864586 | None:intergenic |
| ACCCTAATGTAAAACACAAT+AGG | 0.377031 | 3.4:-865131 | None:intergenic |
| CTTTCTTGTTGTTTCTTCCA+AGG | 0.385382 | 3.4:+865408 | MS.gene50826:CDS |
| TGAACAAATTGACACATTAA+GGG | 0.396891 | 3.4:+865032 | MS.gene50826:CDS |
| AACATCTGCCTTTGTTGGGA+TGG | 0.400841 | 3.4:+864837 | MS.gene50826:CDS |
| CCCTAATGTAAAACACAATA+GGG | 0.407783 | 3.4:-865130 | None:intergenic |
| GTTGTTTCTTCCAAGGAGCT+GGG | 0.411014 | 3.4:+865415 | MS.gene50826:CDS |
| CCCATGCTCTGAGAGATCGC+TGG | 0.424886 | 3.4:-865221 | None:intergenic |
| AGACATACTCCAACCGACTT+TGG | 0.430778 | 3.4:-864811 | None:intergenic |
| GTGAGGGAGTTCACTAGGTT+AGG | 0.450674 | 3.4:+864877 | MS.gene50826:CDS |
| TTAGCTGATCCCCAGCTCCT+TGG | 0.451856 | 3.4:-865425 | None:intergenic |
| GGTGTCACCAGATAATCAAC+AGG | 0.454755 | 3.4:-865069 | None:intergenic |
| ATTAGTGCAATGATCAAGTC+GGG | 0.456623 | 3.4:+865249 | MS.gene50826:CDS |
| ATAGTTGTCGCCGGCCGCAT+TGG | 0.476102 | 3.4:+864970 | MS.gene50826:CDS |
| GGTGACCATCATCTGTGTTA+GGG | 0.480867 | 3.4:-864585 | None:intergenic |
| AACATGGGTGATATAACATT+AGG | 0.482042 | 3.4:-864652 | None:intergenic |
| TATCTATTGTGAGCTGTGCT+TGG | 0.485394 | 3.4:+865289 | MS.gene50826:CDS |
| TTTAGCTCTGGCTTTCTCTA+GGG | 0.488633 | 3.4:+864924 | MS.gene50826:CDS |
| TGTGTTCATTTCGTCATCCA+TGG | 0.509136 | 3.4:-864620 | None:intergenic |
| ATGGGAGGTGCTAAAGGTGT+TGG | 0.515914 | 3.4:+865324 | MS.gene50826:CDS |
| TCATAATGACCTGCCCTGCT+AGG | 0.516210 | 3.4:-864729 | None:intergenic |
| TAAAGGGAAAGGTTCATTGG+AGG | 0.517631 | 3.4:+864758 | MS.gene50826:CDS |
| ACAACAATGGGAGGTGCTAA+AGG | 0.520391 | 3.4:+865318 | MS.gene50826:CDS |
| ATAAACACCATCGGCGAGTA+GGG | 0.522796 | 3.4:-865166 | None:intergenic |
| AATTTGTGAGGGAGTTCACT+AGG | 0.527620 | 3.4:+864872 | MS.gene50826:CDS |
| GCTTGGGGAGTTACAACAAT+GGG | 0.530997 | 3.4:+865306 | MS.gene50826:CDS |
| CCCCTCCATAGGTACCTTGG+CGG | 0.532953 | 3.4:-864691 | None:intergenic |
| CATAAACACCATCGGCGAGT+AGG | 0.533928 | 3.4:-865167 | None:intergenic |
| CTTCAACAACTTGAAAGAGT+TGG | 0.534939 | 3.4:+864787 | MS.gene50826:CDS |
| CCCAGCGATCTCTCAGAGCA+TGG | 0.539097 | 3.4:+865220 | MS.gene50826:CDS |
| CAATAGGGTCAAAAGAGGTA+AGG | 0.541445 | 3.4:-865115 | None:intergenic |
| TCACCCAACTGCTTCTACCA+TGG | 0.543043 | 3.4:+864603 | MS.gene50826:CDS |
| CCATGCTCTGAGAGATCGCT+GGG | 0.544193 | 3.4:-865220 | None:intergenic |
| GGTCACCGCCAAGGTACCTA+TGG | 0.544354 | 3.4:+864686 | MS.gene50826:CDS |
| ATACAAGAAGCAATCACTCT+TGG | 0.547748 | 3.4:-865090 | None:intergenic |
| CATCCATGGTAGAAGCAGTT+GGG | 0.548787 | 3.4:-864606 | None:intergenic |
| TCATCCATGGTAGAAGCAGT+TGG | 0.550685 | 3.4:-864607 | None:intergenic |
| AAAAGCACTTCCAATGCGGC+CGG | 0.554228 | 3.4:-864980 | None:intergenic |
| AGCAGAACTAGGAACTATGC+AGG | 0.556768 | 3.4:+865005 | MS.gene50826:CDS |
| TTGTTTCTTCCAAGGAGCTG+GGG | 0.560587 | 3.4:+865416 | MS.gene50826:CDS |
| GTGCTCCCTAACACAGATGA+TGG | 0.564852 | 3.4:+864580 | MS.gene50826:CDS |
| GTGATATAACATTAGGAGCA+TGG | 0.565838 | 3.4:-864645 | None:intergenic |
| TATTAGTGCAATGATCAAGT+CGG | 0.569938 | 3.4:+865248 | MS.gene50826:CDS |
| TCTAGTGCCCTACTCGCCGA+TGG | 0.571085 | 3.4:+865159 | MS.gene50826:CDS |
| GCTATAAAATGCTGTTTGCA+TGG | 0.575895 | 3.4:-864313 | None:intergenic |
| AGAGTTGGTCCAAAGTCGGT+TGG | 0.577154 | 3.4:+864802 | MS.gene50826:CDS |
| CTCTAGGGAACTAAGTCCTG+TGG | 0.581058 | 3.4:+864939 | MS.gene50826:CDS |
| TCAGTAATTGGTCACCGCCA+AGG | 0.581319 | 3.4:+864677 | MS.gene50826:CDS |
| TTAGGATTGAATAGATCTGT+AGG | 0.581694 | 3.4:+864895 | MS.gene50826:CDS |
| CACCGCCAAGGTACCTATGG+AGG | 0.589168 | 3.4:+864689 | MS.gene50826:CDS |
| AATCCCCTCCATAGGTACCT+TGG | 0.590656 | 3.4:-864694 | None:intergenic |
| AAACACAATAGGGTCAAAAG+AGG | 0.591740 | 3.4:-865120 | None:intergenic |
| TGAAAGAGTTGGTCCAAAGT+CGG | 0.592715 | 3.4:+864798 | MS.gene50826:CDS |
| AAGAGAAGCAGAATATATGA+TGG | 0.594276 | 3.4:-864335 | None:intergenic |
| ACAACTATTGCTGTAACCAC+AGG | 0.596084 | 3.4:-864955 | None:intergenic |
| TCTATTGTGAGCTGTGCTTG+GGG | 0.598712 | 3.4:+865291 | MS.gene50826:CDS |
| CCAGCGATCTCTCAGAGCAT+GGG | 0.600835 | 3.4:+865221 | MS.gene50826:CDS |
| TGACCAATTACTGAGAAACA+TGG | 0.602907 | 3.4:-864668 | None:intergenic |
| ACCGCCAAGGTACCTATGGA+GGG | 0.603553 | 3.4:+864690 | MS.gene50826:CDS |
| AAACTGACAATCCCCTCCAT+AGG | 0.606171 | 3.4:-864702 | None:intergenic |
| CCTTCACGATACAATTTGTG+AGG | 0.612348 | 3.4:+864860 | MS.gene50826:CDS |
| CGTGAAGGCCATCCCAACAA+AGG | 0.621760 | 3.4:-864845 | None:intergenic |
| GTTACAGCAATAGTTGTCGC+CGG | 0.627571 | 3.4:+864961 | MS.gene50826:CDS |
| CTTCACGATACAATTTGTGA+GGG | 0.629039 | 3.4:+864861 | MS.gene50826:CDS |
| CCTCACAAATTGTATCGTGA+AGG | 0.633129 | 3.4:-864860 | None:intergenic |
| GCTAATTCCATAAACACCAT+CGG | 0.644465 | 3.4:-865175 | None:intergenic |
| TAGTGCAATGATCAAGTCGG+GGG | 0.657207 | 3.4:+865251 | MS.gene50826:CDS |
| TGGGGAGTTACAACAATGGG+AGG | 0.664113 | 3.4:+865309 | MS.gene50826:CDS |
| GACCAATTACTGAGAAACAT+GGG | 0.666778 | 3.4:-864667 | None:intergenic |
| TTAGTGCAATGATCAAGTCG+GGG | 0.670713 | 3.4:+865250 | MS.gene50826:CDS |
| TGCTTGGGGAGTTACAACAA+TGG | 0.676051 | 3.4:+865305 | MS.gene50826:CDS |
| CCGCCAAGGTACCTATGGAG+GGG | 0.683323 | 3.4:+864691 | MS.gene50826:CDS |
| CTGCAAAAGCACTTCCAATG+CGG | 0.727646 | 3.4:-864984 | None:intergenic |
| GTGTCACCAGATAATCAACA+GGG | 0.735529 | 3.4:-865068 | None:intergenic |
| GGATTGAATAGATCTGTAGG+CGG | 0.738440 | 3.4:+864898 | MS.gene50826:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAGCATTAACATTATAT+TGG | + | chr3.4:865191-865210 | MS.gene50826:CDS | 15.0% |
| !! | ATTCGAAATGTGAATTTAAT+AGG | + | chr3.4:864506-864525 | MS.gene50826:intron | 20.0% |
| !!! | GTCATTATGAAGATTTTAAA+GGG | + | chr3.4:864742-864761 | MS.gene50826:CDS | 20.0% |
| ! | TGAACAAATTGACACATTAA+GGG | + | chr3.4:865032-865051 | MS.gene50826:CDS | 25.0% |
| !! | GGTCATTATGAAGATTTTAA+AGG | + | chr3.4:864741-864760 | MS.gene50826:CDS | 25.0% |
| !! | TTATAAAACCGAGGTATTAA+GGG | - | chr3.4:864374-864393 | None:intergenic | 25.0% |
| !!! | TATGAAGATTTTAAAGGGAA+AGG | + | chr3.4:864747-864766 | MS.gene50826:CDS | 25.0% |
| AACATGGGTGATATAACATT+AGG | - | chr3.4:864655-864674 | None:intergenic | 30.0% | |
| AAGAGAAGCAGAATATATGA+TGG | - | chr3.4:864338-864357 | None:intergenic | 30.0% | |
| ACCCTAATGTAAAACACAAT+AGG | - | chr3.4:865134-865153 | None:intergenic | 30.0% | |
| ATGGGAGAGTTATAAATATG+AGG | - | chr3.4:864535-864554 | None:intergenic | 30.0% | |
| CCCTAATGTAAAACACAATA+GGG | - | chr3.4:865133-865152 | None:intergenic | 30.0% | |
| CGAAATGTGAATTTAATAGG+AGG | + | chr3.4:864509-864528 | MS.gene50826:intron | 30.0% | |
| CTGAACAAATTGACACATTA+AGG | + | chr3.4:865031-865050 | MS.gene50826:CDS | 30.0% | |
| TATTAGTGCAATGATCAAGT+CGG | + | chr3.4:865248-865267 | MS.gene50826:CDS | 30.0% | |
| TTAGGATTGAATAGATCTGT+AGG | + | chr3.4:864895-864914 | MS.gene50826:CDS | 30.0% | |
| ! | ACCCTATTGTGTTTTACATT+AGG | + | chr3.4:865129-865148 | MS.gene50826:CDS | 30.0% |
| ! | ATTGTGTTTTACATTAGGGT+TGG | + | chr3.4:865134-865153 | MS.gene50826:CDS | 30.0% |
| ! | CCCTATTGTGTTTTACATTA+GGG | + | chr3.4:865130-865149 | MS.gene50826:CDS | 30.0% |
| ! | CTGTTTGGTTTAATTGAGAT+GGG | - | chr3.4:864553-864572 | None:intergenic | 30.0% |
| ! | GTTATAAAACCGAGGTATTA+AGG | - | chr3.4:864375-864394 | None:intergenic | 30.0% |
| ! | TCTGTTTGGTTTAATTGAGA+TGG | - | chr3.4:864554-864573 | None:intergenic | 30.0% |
| ! | TTTTAACATCTGCCTTTGTT+GGG | + | chr3.4:864833-864852 | MS.gene50826:CDS | 30.0% |
| !! | TTTTAAAGGGAAAGGTTCAT+TGG | + | chr3.4:864755-864774 | MS.gene50826:CDS | 30.0% |
| AAACACAATAGGGTCAAAAG+AGG | - | chr3.4:865123-865142 | None:intergenic | 35.0% | |
| AAACCAACGTTATAAAACCG+AGG | - | chr3.4:864383-864402 | None:intergenic | 35.0% | |
| ATACAAGAAGCAATCACTCT+TGG | - | chr3.4:865093-865112 | None:intergenic | 35.0% | |
| ATATATTCTGCTTCTCTTGC+AGG | + | chr3.4:864340-864359 | MS.gene50826:CDS | 35.0% | |
| ATTAGTGCAATGATCAAGTC+GGG | + | chr3.4:865249-865268 | MS.gene50826:CDS | 35.0% | |
| ATTGACACATTAAGGGTTCT+TGG | + | chr3.4:865039-865058 | MS.gene50826:CDS | 35.0% | |
| CTTCAACAACTTGAAAGAGT+TGG | + | chr3.4:864787-864806 | MS.gene50826:CDS | 35.0% | |
| CTTCACGATACAATTTGTGA+GGG | + | chr3.4:864861-864880 | MS.gene50826:CDS | 35.0% | |
| GAATCCAATTGAGAGAGATA+AGG | - | chr3.4:864490-864509 | None:intergenic | 35.0% | |
| GACCAATTACTGAGAAACAT+GGG | - | chr3.4:864670-864689 | None:intergenic | 35.0% | |
| GCAGAAACTTAAGCACAAAT+CGG | + | chr3.4:864437-864456 | MS.gene50826:intron | 35.0% | |
| GCTAATTCCATAAACACCAT+CGG | - | chr3.4:865178-865197 | None:intergenic | 35.0% | |
| GTGATATAACATTAGGAGCA+TGG | - | chr3.4:864648-864667 | None:intergenic | 35.0% | |
| GTGCTTAAGTTTCTGCAATA+TGG | - | chr3.4:864433-864452 | None:intergenic | 35.0% | |
| TGACCAATTACTGAGAAACA+TGG | - | chr3.4:864671-864690 | None:intergenic | 35.0% | |
| TTTGTTCTCCCTTAATACCT+CGG | + | chr3.4:864363-864382 | MS.gene50826:intron | 35.0% | |
| ! | CTTTTAACATCTGCCTTTGT+TGG | + | chr3.4:864832-864851 | MS.gene50826:CDS | 35.0% |
| !! | ATACCTCGGTTTTATAACGT+TGG | + | chr3.4:864377-864396 | MS.gene50826:intron | 35.0% |
| !! | CTTTCTTGTTGTTTCTTCCA+AGG | + | chr3.4:865408-865427 | MS.gene50826:CDS | 35.0% |
| !! | TGTCAGTTTTAATCCTAGCA+GGG | + | chr3.4:864716-864735 | MS.gene50826:CDS | 35.0% |
| !! | TTGTCAGTTTTAATCCTAGC+AGG | + | chr3.4:864715-864734 | MS.gene50826:CDS | 35.0% |
| AATTTGTGAGGGAGTTCACT+AGG | + | chr3.4:864872-864891 | MS.gene50826:CDS | 40.0% | |
| ACAACTATTGCTGTAACCAC+AGG | - | chr3.4:864958-864977 | None:intergenic | 40.0% | |
| ATCTATTGTGAGCTGTGCTT+GGG | + | chr3.4:865290-865309 | MS.gene50826:CDS | 40.0% | |
| ATTGAGAGAGATAAGGTGCA+CGG | - | chr3.4:864483-864502 | None:intergenic | 40.0% | |
| CAATAGGGTCAAAAGAGGTA+AGG | - | chr3.4:865118-865137 | None:intergenic | 40.0% | |
| CACAAATCGGAAGAGTAGTT+TGG | + | chr3.4:864450-864469 | MS.gene50826:intron | 40.0% | |
| CACCCATGTTTCTCAGTAAT+TGG | + | chr3.4:864665-864684 | MS.gene50826:CDS | 40.0% | |
| CCTCACAAATTGTATCGTGA+AGG | - | chr3.4:864863-864882 | None:intergenic | 40.0% | |
| CCTTCACGATACAATTTGTG+AGG | + | chr3.4:864860-864879 | MS.gene50826:CDS | 40.0% | |
| GCTGTTGTGATTTCTCTTGT+TGG | + | chr3.4:865363-865382 | MS.gene50826:CDS | 40.0% | |
| GGATTGAATAGATCTGTAGG+CGG | + | chr3.4:864898-864917 | MS.gene50826:CDS | 40.0% | |
| GTGTCACCAGATAATCAACA+GGG | - | chr3.4:865071-865090 | None:intergenic | 40.0% | |
| TAAAGGGAAAGGTTCATTGG+AGG | + | chr3.4:864758-864777 | MS.gene50826:CDS | 40.0% | |
| TATCTATTGTGAGCTGTGCT+TGG | + | chr3.4:865289-865308 | MS.gene50826:CDS | 40.0% | |
| TGCACCTTATCTCTCTCAAT+TGG | + | chr3.4:864483-864502 | MS.gene50826:intron | 40.0% | |
| TGTGTTCATTTCGTCATCCA+TGG | - | chr3.4:864623-864642 | None:intergenic | 40.0% | |
| TTAGTGCAATGATCAAGTCG+GGG | + | chr3.4:865250-865269 | MS.gene50826:CDS | 40.0% | |
| ! | ATCAGACCCTGTTGATTATC+TGG | + | chr3.4:865062-865081 | MS.gene50826:CDS | 40.0% |
| ! | TGAAAGAGTTGGTCCAAAGT+CGG | + | chr3.4:864798-864817 | MS.gene50826:CDS | 40.0% |
| !! | TTTAGCTCTGGCTTTCTCTA+GGG | + | chr3.4:864924-864943 | MS.gene50826:CDS | 40.0% |
| !!! | TTTTAGCTCTGGCTTTCTCT+AGG | + | chr3.4:864923-864942 | MS.gene50826:CDS | 40.0% |
| AAACTGACAATCCCCTCCAT+AGG | - | chr3.4:864705-864724 | None:intergenic | 45.0% | |
| AACATCTGCCTTTGTTGGGA+TGG | + | chr3.4:864837-864856 | MS.gene50826:CDS | 45.0% | |
| AGCAGAACTAGGAACTATGC+AGG | + | chr3.4:865005-865024 | MS.gene50826:CDS | 45.0% | |
| ATAAACACCATCGGCGAGTA+GGG | - | chr3.4:865169-865188 | None:intergenic | 45.0% | |
| CATCCATGGTAGAAGCAGTT+GGG | - | chr3.4:864609-864628 | None:intergenic | 45.0% | |
| GCTTGGGGAGTTACAACAAT+GGG | + | chr3.4:865306-865325 | MS.gene50826:CDS | 45.0% | |
| GGTGACCATCATCTGTGTTA+GGG | - | chr3.4:864588-864607 | None:intergenic | 45.0% | |
| GTTACAGCAATAGTTGTCGC+CGG | + | chr3.4:864961-864980 | MS.gene50826:CDS | 45.0% | |
| TAGTGCAATGATCAAGTCGG+GGG | + | chr3.4:865251-865270 | MS.gene50826:CDS | 45.0% | |
| TCATCCATGGTAGAAGCAGT+TGG | - | chr3.4:864610-864629 | None:intergenic | 45.0% | |
| TCTATTGTGAGCTGTGCTTG+GGG | + | chr3.4:865291-865310 | MS.gene50826:CDS | 45.0% | |
| TGCTTGGGGAGTTACAACAA+TGG | + | chr3.4:865305-865324 | MS.gene50826:CDS | 45.0% | |
| ! | AGACATACTCCAACCGACTT+TGG | - | chr3.4:864814-864833 | None:intergenic | 45.0% |
| ! | AGTGCTTTTGCAGCAGAACT+AGG | + | chr3.4:864994-865013 | MS.gene50826:CDS | 45.0% |
| ! | GGGAGCACAAACAATCTGTT+TGG | - | chr3.4:864568-864587 | None:intergenic | 45.0% |
| ! | GGTGTCACCAGATAATCAAC+AGG | - | chr3.4:865072-865091 | None:intergenic | 45.0% |
| ! | TTGTTTCTTCCAAGGAGCTG+GGG | + | chr3.4:865416-865435 | MS.gene50826:CDS | 45.0% |
| !! | ACAACAATGGGAGGTGCTAA+AGG | + | chr3.4:865318-865337 | MS.gene50826:CDS | 45.0% |
| !! | AGTTTTAATCCTAGCAGGGC+AGG | + | chr3.4:864720-864739 | MS.gene50826:CDS | 45.0% |
| !! | CTGCAAAAGCACTTCCAATG+CGG | - | chr3.4:864987-865006 | None:intergenic | 45.0% |
| !! | GTTGTTTCTTCCAAGGAGCT+GGG | + | chr3.4:865415-865434 | MS.gene50826:CDS | 45.0% |
| !! | TGTTGTTTCTTCCAAGGAGC+TGG | + | chr3.4:865414-865433 | MS.gene50826:CDS | 45.0% |
| AATCCCCTCCATAGGTACCT+TGG | - | chr3.4:864697-864716 | None:intergenic | 50.0% | |
| CATAAACACCATCGGCGAGT+AGG | - | chr3.4:865170-865189 | None:intergenic | 50.0% | |
| CTACTCGCCGATGGTGTTTA+TGG | + | chr3.4:865168-865187 | MS.gene50826:CDS | 50.0% | |
| GGGTGACCATCATCTGTGTT+AGG | - | chr3.4:864589-864608 | None:intergenic | 50.0% | |
| GTGAGGGAGTTCACTAGGTT+AGG | + | chr3.4:864877-864896 | MS.gene50826:CDS | 50.0% | |
| GTGCTCCCTAACACAGATGA+TGG | + | chr3.4:864580-864599 | MS.gene50826:CDS | 50.0% | |
| TCACCCAACTGCTTCTACCA+TGG | + | chr3.4:864603-864622 | MS.gene50826:CDS | 50.0% | |
| TCAGTAATTGGTCACCGCCA+AGG | + | chr3.4:864677-864696 | MS.gene50826:CDS | 50.0% | |
| TCATAATGACCTGCCCTGCT+AGG | - | chr3.4:864732-864751 | None:intergenic | 50.0% | |
| TGGGGAGTTACAACAATGGG+AGG | + | chr3.4:865309-865328 | MS.gene50826:CDS | 50.0% | |
| ! | AGAGTTGGTCCAAAGTCGGT+TGG | + | chr3.4:864802-864821 | MS.gene50826:CDS | 50.0% |
| ! | ATGATCAAGTCGGGGGCTTT+TGG | + | chr3.4:865258-865277 | MS.gene50826:CDS | 50.0% |
| ! | CTCTAGGGAACTAAGTCCTG+TGG | + | chr3.4:864939-864958 | MS.gene50826:CDS | 50.0% |
| !! | AAAAGCACTTCCAATGCGGC+CGG | - | chr3.4:864983-865002 | None:intergenic | 50.0% |
| !! | ATGGGAGGTGCTAAAGGTGT+TGG | + | chr3.4:865324-865343 | MS.gene50826:CDS | 50.0% |
| !!! | TGTAGGCGGTGTTTTAGCTC+TGG | + | chr3.4:864912-864931 | MS.gene50826:CDS | 50.0% |
| CCAGCGATCTCTCAGAGCAT+GGG | + | chr3.4:865221-865240 | MS.gene50826:CDS | 55.0% | |
| CGTGAAGGCCATCCCAACAA+AGG | - | chr3.4:864848-864867 | None:intergenic | 55.0% | |
| TTAGCTGATCCCCAGCTCCT+TGG | - | chr3.4:865428-865447 | None:intergenic | 55.0% | |
| ! | ACCGCCAAGGTACCTATGGA+GGG | + | chr3.4:864690-864709 | MS.gene50826:CDS | 55.0% |
| !! | CCATGCTCTGAGAGATCGCT+GGG | - | chr3.4:865223-865242 | None:intergenic | 55.0% |
| ATAGTTGTCGCCGGCCGCAT+TGG | + | chr3.4:864970-864989 | MS.gene50826:CDS | 60.0% | |
| CCCAGCGATCTCTCAGAGCA+TGG | + | chr3.4:865220-865239 | MS.gene50826:CDS | 60.0% | |
| CCCCTCCATAGGTACCTTGG+CGG | - | chr3.4:864694-864713 | None:intergenic | 60.0% | |
| TCTAGTGCCCTACTCGCCGA+TGG | + | chr3.4:865159-865178 | MS.gene50826:CDS | 60.0% | |
| ! | CACCGCCAAGGTACCTATGG+AGG | + | chr3.4:864689-864708 | MS.gene50826:CDS | 60.0% |
| ! | CCGCCAAGGTACCTATGGAG+GGG | + | chr3.4:864691-864710 | MS.gene50826:CDS | 60.0% |
| ! | GGTCACCGCCAAGGTACCTA+TGG | + | chr3.4:864686-864705 | MS.gene50826:CDS | 60.0% |
| !! | CCCATGCTCTGAGAGATCGC+TGG | - | chr3.4:865224-865243 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 864315 | 865461 | 864315 | ID=MS.gene50826 |
| chr3.4 | mRNA | 864315 | 865461 | 864315 | ID=MS.gene50826.t1;Parent=MS.gene50826 |
| chr3.4 | exon | 864315 | 864361 | 864315 | ID=MS.gene50826.t1.exon1;Parent=MS.gene50826.t1 |
| chr3.4 | CDS | 864315 | 864361 | 864315 | ID=cds.MS.gene50826.t1;Parent=MS.gene50826.t1 |
| chr3.4 | exon | 864573 | 865461 | 864573 | ID=MS.gene50826.t1.exon2;Parent=MS.gene50826.t1 |
| chr3.4 | CDS | 864573 | 865461 | 864573 | ID=cds.MS.gene50826.t1;Parent=MS.gene50826.t1 |
| Gene Sequence |
| Protein sequence |
