AlfalfaGEDB | MS.gene52610

M. sativa cultivar XinJiangDaYe / MS.gene52610

KEGG: K21437
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52610.t1	XP_003590975.1	95.3	85	4	0	1	85	304	388	4.40E-39	170.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52610.t1	G7I6T1	95.3	85	4	0	1	85	304	388	3.2e-39	170.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04915	MS.gene52610	0.835532	1.59E-56	-1.69E-46
MS.gene04917	MS.gene52610	0.834777	2.46E-56	-1.69E-46
MS.gene04984	MS.gene52610	0.813649	2.30E-51	-1.69E-46
MS.gene049887	MS.gene52610	0.871374	7.18E-67	-1.69E-46
MS.gene050085	MS.gene52610	0.80122	9.98E-49	-1.69E-46
MS.gene050317	MS.gene52610	0.806899	6.57E-50	-1.69E-46
MS.gene050359	MS.gene52610	0.83738	5.38E-57	-1.69E-46
MS.gene050361	MS.gene52610	0.835636	1.50E-56	-1.69E-46
MS.gene050386	MS.gene52610	0.812586	3.93E-51	-1.69E-46
MS.gene050551	MS.gene52610	0.820948	5.24E-53	-1.69E-46
MS.gene050629	MS.gene52610	-0.818511	1.89E-52	-1.69E-46
MS.gene050654	MS.gene52610	0.819408	1.18E-52	-1.69E-46
MS.gene050762	MS.gene52610	0.817117	3.89E-52	-1.69E-46
MS.gene050763	MS.gene52610	0.814555	1.45E-51	-1.69E-46
MS.gene050807	MS.gene52610	0.801658	8.12E-49	-1.69E-46
MS.gene050838	MS.gene52610	0.856675	2.74E-62	-1.69E-46
MS.gene051003	MS.gene52610	0.811433	7.02E-51	-1.69E-46
MS.gene051102	MS.gene52610	0.82141	4.10E-53	-1.69E-46
MS.gene051233	MS.gene52610	0.827472	1.54E-54	-1.69E-46
MS.gene051381	MS.gene52610	0.822512	2.28E-53	-1.69E-46
MS.gene051631	MS.gene52610	-0.802072	6.67E-49	-1.69E-46
MS.gene051852	MS.gene52610	0.811758	5.96E-51	-1.69E-46
MS.gene052133	MS.gene52610	0.803513	3.36E-49	-1.69E-46
MS.gene052242	MS.gene52610	-0.815372	9.56E-52	-1.69E-46
MS.gene052307	MS.gene52610	0.811958	5.39E-51	-1.69E-46
MS.gene052335	MS.gene52610	0.819284	1.26E-52	-1.69E-46
MS.gene052342	MS.gene52610	0.833161	6.25E-56	-1.69E-46
MS.gene052397	MS.gene52610	0.842122	3.14E-58	-1.69E-46
MS.gene052434	MS.gene52610	0.80311	4.08E-49	-1.69E-46
MS.gene052516	MS.gene52610	0.818318	2.09E-52	-1.69E-46
MS.gene052609	MS.gene52610	0.808837	2.55E-50	-1.69E-46
MS.gene052665	MS.gene52610	0.817291	3.56E-52	-1.69E-46
MS.gene053058	MS.gene52610	0.813781	2.15E-51	-1.69E-46
MS.gene053143	MS.gene52610	0.814428	1.55E-51	-1.69E-46
MS.gene053581	MS.gene52610	0.809886	1.52E-50	-1.69E-46
MS.gene054379	MS.gene52610	0.804257	2.36E-49	-1.69E-46
MS.gene054823	MS.gene52610	0.809691	1.67E-50	-1.69E-46
MS.gene055311	MS.gene52610	0.821281	4.39E-53	-1.69E-46
MS.gene055468	MS.gene52610	0.804714	1.89E-49	-1.69E-46
MS.gene055469	MS.gene52610	0.849227	3.70E-60	-1.69E-46
MS.gene055513	MS.gene52610	0.801695	7.97E-49	-1.69E-46
MS.gene056097	MS.gene52610	0.822798	1.95E-53	-1.69E-46
MS.gene056181	MS.gene52610	0.843803	1.12E-58	-1.69E-46
MS.gene056308	MS.gene52610	0.804635	1.97E-49	-1.69E-46
MS.gene056390	MS.gene52610	0.818382	2.02E-52	-1.69E-46
MS.gene056752	MS.gene52610	0.82122	4.53E-53	-1.69E-46
MS.gene057057	MS.gene52610	0.809657	1.70E-50	-1.69E-46
MS.gene057452	MS.gene52610	-0.8089	2.47E-50	-1.69E-46
MS.gene057721	MS.gene52610	0.810669	1.03E-50	-1.69E-46
MS.gene058054	MS.gene52610	0.825249	5.20E-54	-1.69E-46
MS.gene058055	MS.gene52610	0.803669	3.12E-49	-1.69E-46
MS.gene058638	MS.gene52610	0.835321	1.80E-56	-1.69E-46
MS.gene058639	MS.gene52610	0.833057	6.64E-56	-1.69E-46
MS.gene058646	MS.gene52610	0.822249	2.62E-53	-1.69E-46
MS.gene058654	MS.gene52610	0.821809	3.31E-53	-1.69E-46
MS.gene058758	MS.gene52610	0.833798	4.34E-56	-1.69E-46
MS.gene058852	MS.gene52610	0.812532	4.04E-51	-1.69E-46
MS.gene059170	MS.gene52610	0.808725	2.69E-50	-1.69E-46
MS.gene059171	MS.gene52610	0.840194	1.01E-57	-1.69E-46
MS.gene059713	MS.gene52610	0.8164	5.64E-52	-1.69E-46
MS.gene060296	MS.gene52610	0.813159	2.95E-51	-1.69E-46
MS.gene060563	MS.gene52610	0.849251	3.65E-60	-1.69E-46
MS.gene060869	MS.gene52610	0.824045	9.99E-54	-1.69E-46
MS.gene060870	MS.gene52610	0.82074	5.85E-53	-1.69E-46
MS.gene060932	MS.gene52610	0.815653	8.28E-52	-1.69E-46
MS.gene061006	MS.gene52610	0.863545	2.31E-64	-1.69E-46
MS.gene061100	MS.gene52610	0.813267	2.79E-51	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52610.t1	MTR_1g080310	95.294	85	4	0	1	85	304	388	1.55e-42	146
MS.gene52610.t1	MTR_7g115580	62.500	96	24	2	1	85	330	424	1.91e-29	110

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52610.t1	AT3G04470	47.059	102	19	4	1	85	304	387	1.84e-17	75.9
MS.gene52610.t1	AT1G04780	41.121	107	38	6	1	89	304	403	2.02e-11	58.9

Find 0 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TATGATAATTGTGAAGTTAA+TGG	-	6821:1108-1127	MS.gene52610:CDS	20.0%
	TAATTGTGAAGTTAATGGTG+TGG	-	6821:1113-1132	MS.gene52610:CDS	30.0%
	GGTGTGGTTAAAGAGAAGAA+GGG	-	6821:1129-1148	MS.gene52610:CDS	40.0%
	TGGTGTGGTTAAAGAGAAGA+AGG	-	6821:1128-1147	MS.gene52610:CDS	40.0%
	TGGTTAAAGAGAAGAAGGGT+TGG	-	6821:1133-1152	MS.gene52610:CDS	40.0%
!	AGAGGTTTTTGCAAATGGAG+AGG	-	6821:951-970	MS.gene52610:CDS	40.0%
!	GACGAAGAGGTTTTTGCAAA+TGG	-	6821:946-965	MS.gene52610:CDS	40.0%
	TGCAATTGGATTCGGCTTTG+AGG	-	6821:1007-1026	MS.gene52610:CDS	45.0%
	TGGTGAGTGTGAAATCGAGA+CGG	-	6821:905-924	MS.gene52610:CDS	45.0%
!	GGAGAGAGTGCAATTGGATT+CGG	-	6821:999-1018	MS.gene52610:CDS	45.0%
!	TCTTCGTCATTCAAAGCACC+AGG	+	6821:934-953	MS.gene52610:intergenic	45.0%
!	TGGTGCTTTGAATGACGAAG+AGG	-	6821:933-952	MS.gene52610:CDS	45.0%
!!	ATTGGATTCGGCTTTGAGGA+TGG	-	6821:1011-1030	MS.gene52610:CDS	45.0%
!!	GAGAAGAAGGGTTGGTTTGA+TGG	-	6821:1141-1160	MS.gene52610:CDS	45.0%
!!	TGATGATGTGTTGACTGCTG+AGG	-	6821:978-997	MS.gene52610:CDS	45.0%
!!	TTGGATTCGGCTTTGAGGAT+GGG	-	6821:1012-1031	MS.gene52610:CDS	45.0%
	GGATGGTGTTTGTCAAGACG+AGG	-	6821:1041-1060	MS.gene52610:CDS	50.0%
	GGTGAGTGTGAAATCGAGAC+GGG	-	6821:906-925	MS.gene52610:CDS	50.0%
	GTTTGTCAAGACGAGGAACC+TGG	-	6821:1048-1067	MS.gene52610:CDS	50.0%
!	TGCTGAGGAGAGAGTGCAAT+TGG	-	6821:993-1012	MS.gene52610:CDS	50.0%
!!	TGGATTCGGCTTTGAGGATG+GGG	-	6821:1013-1032	MS.gene52610:CDS	50.0%
	GCAGCAGGAGGAGGATTTGA+TGG	-	6821:1072-1091	MS.gene52610:CDS	55.0%
	TTGAGGATGGGGAACTCGGA+TGG	-	6821:1024-1043	MS.gene52610:CDS	55.0%
!	GGAGGAGGATTTGATGGTCG+CGG	-	6821:1078-1097	MS.gene52610:CDS	55.0%
!	GTGAAATCGAGACGGGTTCC+TGG	-	6821:913-932	MS.gene52610:CDS	55.0%
!!	GGCTTTGAGGATGGGGAACT+CGG	-	6821:1020-1039	MS.gene52610:CDS	55.0%
	AATCCTCCTCCTGCTGCTCC+AGG	+	6821:1069-1088	MS.gene52609:intergenic	60.0%
	GAACCTGGAGCAGCAGGAGG+AGG	-	6821:1063-1082	MS.gene52610:CDS	65.0%
	GACGAGGAACCTGGAGCAGC+AGG	-	6821:1057-1076	MS.gene52610:CDS	65.0%
	GAGGAACCTGGAGCAGCAGG+AGG	-	6821:1060-1079	MS.gene52610:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
6821	gene	904	1188	904	ID=MS.gene52610
6821	mRNA	904	1188	904	ID=MS.gene52610.t1;Parent=MS.gene52610
6821	exon	904	1188	904	ID=MS.gene52610.t1.exon1;Parent=MS.gene52610.t1
6821	CDS	904	1188	904	ID=cds.MS.gene52610.t1;Parent=MS.gene52610.t1

Gene Sequence	>MS.gene52610 ATGGTGAGTGTGAAATCGAGACGGGTTCCTGGTGCTTTGAATGACGAAGAGGTTTTTGCAAATGGAGAGGATTATGATGATGTGTTGACTGCTGAGGAGAGAGTGCAATTGGATTCGGCTTTGAGGATGGGGAACTCGGATGGTGTTTGTCAAGACGAGGAACCTGGAGCAGCAGGAGGAGGATTTGATGGTCGCGGAATTGTGTATGATAATTGTGAAGTTAATGGTGTGGTTAAAGAGAAGAAGGGTTGGTTTGATGGAATAAGAATCCAAACCAGAGATTGA
Protein sequence	>MS.gene52610.t1 MVSVKSRRVPGALNDEEVFANGEDYDDVLTAEERVQLDSALRMGNSDGVCQDEEPGAAGGGFDGRGIVYDNCEVNGVVKEKKGWFDGIRIQTRD