Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53552.t1 | XP_003590173.2 | 99 | 798 | 8 | 0 | 1 | 798 | 1 | 798 | 0.00E+00 | 1317.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53552.t1 | O23052 | 77.3 | 806 | 173 | 5 | 1 | 798 | 1 | 804 | 1.9e-293 | 1009.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53552.t1 | G7I6P0 | 99.0 | 798 | 8 | 0 | 1 | 798 | 1 | 798 | 0.0e+00 | 1317.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene53552 | 0.829289 | 5.59E-55 | -1.69E-46 |
| MS.gene04917 | MS.gene53552 | 0.833034 | 6.73E-56 | -1.69E-46 |
| MS.gene049685 | MS.gene53552 | 0.829604 | 4.69E-55 | -1.69E-46 |
| MS.gene049807 | MS.gene53552 | 0.805395 | 1.36E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene53552 | 0.852593 | 4.17E-61 | -1.69E-46 |
| MS.gene050359 | MS.gene53552 | 0.836695 | 8.05E-57 | -1.69E-46 |
| MS.gene050361 | MS.gene53552 | 0.838967 | 2.10E-57 | -1.69E-46 |
| MS.gene050414 | MS.gene53552 | 0.823888 | 1.09E-53 | -1.69E-46 |
| MS.gene050551 | MS.gene53552 | 0.830006 | 3.74E-55 | -1.69E-46 |
| MS.gene050646 | MS.gene53552 | 0.824928 | 6.19E-54 | -1.69E-46 |
| MS.gene050654 | MS.gene53552 | 0.83871 | 2.45E-57 | -1.69E-46 |
| MS.gene050689 | MS.gene53552 | 0.809079 | 2.26E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene53552 | 0.806924 | 6.50E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene53552 | 0.840578 | 7.99E-58 | -1.69E-46 |
| MS.gene050941 | MS.gene53552 | 0.80809 | 3.67E-50 | -1.69E-46 |
| MS.gene051003 | MS.gene53552 | 0.809219 | 2.11E-50 | -1.69E-46 |
| MS.gene051102 | MS.gene53552 | 0.824006 | 1.02E-53 | -1.69E-46 |
| MS.gene051233 | MS.gene53552 | 0.812818 | 3.50E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene53552 | 0.822396 | 2.42E-53 | -1.69E-46 |
| MS.gene051381 | MS.gene53552 | 0.818613 | 1.79E-52 | -1.69E-46 |
| MS.gene051852 | MS.gene53552 | 0.83881 | 2.31E-57 | -1.69E-46 |
| MS.gene052242 | MS.gene53552 | -0.824495 | 7.83E-54 | -1.69E-46 |
| MS.gene052307 | MS.gene53552 | 0.841199 | 5.49E-58 | -1.69E-46 |
| MS.gene052335 | MS.gene53552 | 0.822428 | 2.38E-53 | -1.69E-46 |
| MS.gene052342 | MS.gene53552 | 0.813345 | 2.68E-51 | -1.69E-46 |
| MS.gene052397 | MS.gene53552 | 0.840977 | 6.28E-58 | -1.69E-46 |
| MS.gene052516 | MS.gene53552 | 0.829772 | 4.27E-55 | -1.69E-46 |
| MS.gene052609 | MS.gene53552 | 0.829987 | 3.78E-55 | -1.69E-46 |
| MS.gene052665 | MS.gene53552 | 0.82321 | 1.57E-53 | -1.69E-46 |
| MS.gene053058 | MS.gene53552 | 0.814288 | 1.66E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene53552 | 0.816464 | 5.46E-52 | -1.69E-46 |
| MS.gene053143 | MS.gene53552 | 0.833918 | 4.05E-56 | -1.69E-46 |
| MS.gene053167 | MS.gene53552 | 0.806824 | 6.82E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene53552 | 0.807038 | 6.14E-50 | -1.69E-46 |
| MS.gene054824 | MS.gene53552 | 0.813825 | 2.10E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene53552 | 0.800722 | 1.26E-48 | -1.69E-46 |
| MS.gene055468 | MS.gene53552 | 0.801785 | 7.64E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene53552 | 0.844378 | 7.85E-59 | -1.69E-46 |
| MS.gene055513 | MS.gene53552 | 0.817729 | 2.84E-52 | -1.69E-46 |
| MS.gene056097 | MS.gene53552 | 0.853447 | 2.38E-61 | -1.69E-46 |
| MS.gene056181 | MS.gene53552 | 0.82852 | 8.59E-55 | -1.69E-46 |
| MS.gene056285 | MS.gene53552 | 0.803301 | 3.72E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene53552 | 0.810699 | 1.01E-50 | -1.69E-46 |
| MS.gene056390 | MS.gene53552 | 0.821693 | 3.53E-53 | -1.69E-46 |
| MS.gene056480 | MS.gene53552 | 0.801676 | 8.05E-49 | -1.69E-46 |
| MS.gene056507 | MS.gene53552 | 0.812893 | 3.37E-51 | -1.69E-46 |
| MS.gene058261 | MS.gene53552 | 0.818487 | 1.91E-52 | -1.69E-46 |
| MS.gene058278 | MS.gene53552 | 0.803452 | 3.46E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene53552 | 0.847132 | 1.40E-59 | -1.69E-46 |
| MS.gene058639 | MS.gene53552 | 0.847456 | 1.14E-59 | -1.69E-46 |
| MS.gene058720 | MS.gene53552 | 0.803292 | 3.74E-49 | -1.69E-46 |
| MS.gene058758 | MS.gene53552 | 0.839813 | 1.27E-57 | -1.69E-46 |
| MS.gene059007 | MS.gene53552 | 0.843615 | 1.26E-58 | -1.69E-46 |
| MS.gene059170 | MS.gene53552 | 0.812613 | 3.88E-51 | -1.69E-46 |
| MS.gene059171 | MS.gene53552 | 0.815521 | 8.86E-52 | -1.69E-46 |
| MS.gene059713 | MS.gene53552 | 0.805134 | 1.55E-49 | -1.69E-46 |
| MS.gene059965 | MS.gene53552 | 0.813542 | 2.43E-51 | -1.69E-46 |
| MS.gene060296 | MS.gene53552 | 0.810089 | 1.37E-50 | -1.69E-46 |
| MS.gene060400 | MS.gene53552 | 0.803131 | 4.04E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene53552 | 0.821118 | 4.79E-53 | -1.69E-46 |
| MS.gene060563 | MS.gene53552 | 0.870824 | 1.09E-66 | -1.69E-46 |
| MS.gene060637 | MS.gene53552 | 0.800429 | 1.45E-48 | -1.69E-46 |
| MS.gene060932 | MS.gene53552 | 0.833065 | 6.60E-56 | -1.69E-46 |
| MS.gene061006 | MS.gene53552 | 0.865436 | 5.91E-65 | -1.69E-46 |
| MS.gene061100 | MS.gene53552 | 0.814036 | 1.89E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene53552 | MS.gene004367 | PPI |
| MS.gene53552 | MS.gene067862 | PPI |
| MS.gene53552 | MS.gene00644 | PPI |
| MS.gene53552 | MS.gene05802 | PPI |
| MS.gene43594 | MS.gene53552 | PPI |
| MS.gene53552 | MS.gene072035 | PPI |
| MS.gene53552 | MS.gene41781 | PPI |
| MS.gene53552 | MS.gene042471 | PPI |
| MS.gene53552 | MS.gene002687 | PPI |
| MS.gene53552 | MS.gene002070 | PPI |
| MS.gene047176 | MS.gene53552 | PPI |
| MS.gene53552 | MS.gene08159 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53552.t1 | MTR_1g045490 | 98.997 | 798 | 8 | 0 | 1 | 798 | 1 | 798 | 0.0 | 1641 |
| MS.gene53552.t1 | MTR_1g079510 | 23.411 | 299 | 196 | 2 | 201 | 473 | 140 | 431 | 2.62e-12 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53552.t1 | AT1G05150 | 76.712 | 803 | 177 | 5 | 1 | 795 | 1 | 801 | 0.0 | 1308 |
| MS.gene53552.t1 | AT2G32450 | 76.625 | 800 | 177 | 6 | 1 | 795 | 1 | 795 | 0.0 | 1292 |
| MS.gene53552.t1 | AT3G04240 | 26.506 | 249 | 168 | 3 | 201 | 449 | 131 | 364 | 2.12e-13 | 74.7 |
| MS.gene53552.t1 | AT3G04240 | 22.846 | 267 | 180 | 2 | 233 | 473 | 88 | 354 | 5.24e-12 | 70.1 |
| MS.gene53552.t1 | AT3G04240 | 23.715 | 253 | 161 | 4 | 233 | 473 | 190 | 422 | 4.21e-11 | 67.4 |
| MS.gene53552.t1 | AT3G04240 | 25.926 | 243 | 168 | 2 | 233 | 473 | 54 | 286 | 9.30e-11 | 66.2 |
Find 200 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTATCGGTTCGCGCTTTA+AGG | 0.091534 | 1.2:+28412326 | MS.gene53552:CDS |
| AGAAAGAATCCTCTCATTTA+TGG | 0.127070 | 1.2:-28411911 | None:intergenic |
| ATTGATGCTCTTTATAATTT+AGG | 0.139271 | 1.2:+28411340 | MS.gene53552:CDS |
| TAATTTAGGTGGATTGTATA+TGG | 0.219261 | 1.2:+28411354 | MS.gene53552:CDS |
| TTAAAGCGCGAACCGATAAT+AGG | 0.224124 | 1.2:-28412324 | None:intergenic |
| GCAGGAAGAGTACAGATTTA+AGG | 0.228301 | 1.2:+28412416 | MS.gene53552:CDS |
| GTATGAACATCAATTGTTTA+AGG | 0.249934 | 1.2:+28410838 | MS.gene53552:CDS |
| AAGCATTGAAAATGACAAAT+AGG | 0.254087 | 1.2:+28411518 | MS.gene53552:CDS |
| TGAGAGGATTCTTTCTGTTT+TGG | 0.256631 | 1.2:+28411918 | MS.gene53552:CDS |
| TTTCTTCCAAGTTCGGTTTC+CGG | 0.269538 | 1.2:-28411831 | None:intergenic |
| TTCGGATAAGAGAGTGGTTT+GGG | 0.272199 | 1.2:+28410694 | MS.gene53552:CDS |
| GAGTACAGATTTAAGGAGTA+TGG | 0.280282 | 1.2:+28412423 | MS.gene53552:CDS |
| TGAGTGCTTGTGAGTATTAT+AGG | 0.285254 | 1.2:+28411086 | MS.gene53552:CDS |
| GCTAAAGATGGGAAAATTAA+AGG | 0.286177 | 1.2:+28410608 | MS.gene53552:CDS |
| TGCTGGTTGGTCTCGCGAAT+TGG | 0.301878 | 1.2:+28410655 | MS.gene53552:CDS |
| GCTGGTTGGTCTCGCGAATT+GGG | 0.304388 | 1.2:+28410656 | MS.gene53552:CDS |
| CATCATGATTCGCGTCGAAT+TGG | 0.309699 | 1.2:-28410160 | None:intergenic |
| GCAAGTACACTTATCTTTCA+TGG | 0.311003 | 1.2:-28412460 | None:intergenic |
| GAAGACTCCGGCGCCGGATT+CGG | 0.314641 | 1.2:+28410421 | MS.gene53552:CDS |
| GGTAATTGTTATTATGTTCT+TGG | 0.314765 | 1.2:+28410929 | MS.gene53552:CDS |
| TGAGATGTATACGAGAGTTT+TGG | 0.329243 | 1.2:+28411402 | MS.gene53552:CDS |
| GAGTGCTTGTGAGTATTATA+GGG | 0.332729 | 1.2:+28411087 | MS.gene53552:CDS |
| GGGGCCTTCGACTGAGATTT+CGG | 0.342250 | 1.2:+28410676 | MS.gene53552:CDS |
| CGTTAACCTTGGTATTTCAT+TGG | 0.351194 | 1.2:+28411045 | MS.gene53552:CDS |
| CCAGATACATCCAGTTGTTA+AGG | 0.351923 | 1.2:+28412100 | MS.gene53552:CDS |
| CTCTGGAGGACCACCACAAA+TGG | 0.355655 | 1.2:-28411995 | None:intergenic |
| GATGTGCCGGTGTCGTATTC+TGG | 0.361458 | 1.2:+28411784 | MS.gene53552:CDS |
| TTATGTTCTTGGAAGGTATA+AGG | 0.364044 | 1.2:+28410940 | MS.gene53552:CDS |
| TTTCGGATAAGAGAGTGGTT+TGG | 0.368094 | 1.2:+28410693 | MS.gene53552:CDS |
| ATTAGCACCGTCTTCGTTCA+TGG | 0.368955 | 1.2:-28412058 | None:intergenic |
| CCAAGGTGTTAGCGAATTGA+TGG | 0.371774 | 1.2:+28412140 | MS.gene53552:CDS |
| ACCTATGCTGAATTTATTGA+TGG | 0.375679 | 1.2:+28410287 | MS.gene53552:CDS |
| TGGCTGTGTGGCCGAATCAT+TGG | 0.382968 | 1.2:+28411422 | MS.gene53552:CDS |
| CCTTAACAACTGGATGTATC+TGG | 0.383500 | 1.2:-28412100 | None:intergenic |
| CGAAGAATTTCTTCCAAGTT+CGG | 0.385586 | 1.2:-28411838 | None:intergenic |
| TTTCGGCGTAGGGGAATATA+AGG | 0.387188 | 1.2:+28411168 | MS.gene53552:CDS |
| GCTATTCTTGCTCCCATTTG+TGG | 0.391363 | 1.2:+28411982 | MS.gene53552:CDS |
| ATGACAAATGGCGATTCTTC+CGG | 0.395230 | 1.2:-28411613 | None:intergenic |
| TATGTTTGATGATCCAGATT+GGG | 0.395444 | 1.2:+28412215 | MS.gene53552:CDS |
| CATAAACAGCCCTTAACAAC+TGG | 0.401595 | 1.2:-28412110 | None:intergenic |
| ATGGTGCTGGTGATGTTGAT+AGG | 0.403408 | 1.2:+28410354 | MS.gene53552:CDS |
| GAACAAGGCTGTGTCGTTGC+TGG | 0.409634 | 1.2:+28411456 | MS.gene53552:CDS |
| GACGAAGAAGCCTCCGAATC+CGG | 0.414296 | 1.2:-28410434 | None:intergenic |
| ACAGCTCCTTGAAAAGTGTC+TGG | 0.414755 | 1.2:-28411883 | None:intergenic |
| AAGAACATAATAACAATTAC+CGG | 0.417448 | 1.2:-28410927 | None:intergenic |
| GTCCTCCAGAGAGACGTAAA+AGG | 0.418171 | 1.2:+28412007 | MS.gene53552:CDS |
| AACTGCGCCCGCCAATGATT+CGG | 0.418538 | 1.2:-28411433 | None:intergenic |
| AATTGCAACCTGTTGATGTT+AGG | 0.419007 | 1.2:+28410891 | MS.gene53552:CDS |
| TTTGATGCTTATTCTGATGC+TGG | 0.425129 | 1.2:+28410638 | MS.gene53552:CDS |
| GAAGGCTATTGATTTGAAAC+CGG | 0.425202 | 1.2:+28411312 | MS.gene53552:CDS |
| ACCTTAGTGAAGCTTGAAAC+AGG | 0.426443 | 1.2:+28412255 | MS.gene53552:CDS |
| TGCACATTGTGATCTGGCTT+CGG | 0.426766 | 1.2:+28411243 | MS.gene53552:CDS |
| TGCTGATGCACATTGTGATC+TGG | 0.428424 | 1.2:+28411237 | MS.gene53552:CDS |
| AGGTGGATTGTATATGGACT+TGG | 0.432754 | 1.2:+28411360 | MS.gene53552:CDS |
| GCACTTGAAGCTGCTGAGGC+TGG | 0.432831 | 1.2:+28410986 | MS.gene53552:CDS |
| TCGTCGCACCTTCTCCGATC+TGG | 0.433820 | 1.2:-28410129 | None:intergenic |
| AAATGAGGCCTAACATCAAC+AGG | 0.435494 | 1.2:-28410899 | None:intergenic |
| CTGAGGCTGGTGGAAATCAA+TGG | 0.435659 | 1.2:+28410999 | MS.gene53552:CDS |
| ATCCATCCGGAAACCGAACT+TGG | 0.438061 | 1.2:+28411825 | MS.gene53552:CDS |
| CAGATACATCCAGTTGTTAA+GGG | 0.440498 | 1.2:+28412101 | MS.gene53552:CDS |
| GCTGTGTCGTTGCTGGGAGC+TGG | 0.440564 | 1.2:+28411463 | MS.gene53552:CDS |
| TCTTCCTGCTTAAATGTAGA+AGG | 0.441960 | 1.2:-28412402 | None:intergenic |
| TAAAGCGCGAACCGATAATA+GGG | 0.442618 | 1.2:-28412323 | None:intergenic |
| ATCATGATTCGCGTCGAATT+GGG | 0.445997 | 1.2:-28410159 | None:intergenic |
| GTGTGCCGCTACCCTATTAT+CGG | 0.446048 | 1.2:+28412312 | MS.gene53552:CDS |
| TTTGATGGACATATGGCAAT+TGG | 0.447629 | 1.2:+28410806 | MS.gene53552:CDS |
| GAAGAAATGGCGTCGCTTGT+TGG | 0.450116 | 1.2:+28410197 | MS.gene53552:CDS |
| AGAGTGGTTTGGGATGAATC+AGG | 0.453698 | 1.2:+28410704 | MS.gene53552:CDS |
| AGCATTGAAAATGACAAATA+GGG | 0.458819 | 1.2:+28411519 | MS.gene53552:CDS |
| TTCATTGGAAGGTGAAGGTA+TGG | 0.460120 | 1.2:+28411060 | MS.gene53552:CDS |
| GGTTCAGGCAGATTAGATCT+TGG | 0.460339 | 1.2:+28411949 | MS.gene53552:CDS |
| AGTTCTCAAAAGACCCTCAT+AGG | 0.463697 | 1.2:-28410324 | None:intergenic |
| CATCAATTCGCTAACACCTT+GGG | 0.469273 | 1.2:-28412139 | None:intergenic |
| ATCACCAACTGTCTTAAACT+TGG | 0.470600 | 1.2:-28411647 | None:intergenic |
| AAAAGAAGAACAAACCCAAT+GGG | 0.477510 | 1.2:+28411584 | MS.gene53552:CDS |
| TTAGCACCGTCTTCGTTCAT+GGG | 0.478305 | 1.2:-28412057 | None:intergenic |
| GATTGTATATGGACTTGGGT+AGG | 0.484500 | 1.2:+28411365 | MS.gene53552:CDS |
| GAAGCAGCGGACAGCTGCGT+GGG | 0.488728 | 1.2:+28410493 | MS.gene53552:CDS |
| TCTTCCGGAGTATCCCCATT+GGG | 0.488844 | 1.2:-28411598 | None:intergenic |
| CTTGCTTTAACTTGCAATCA+CGG | 0.490282 | 1.2:+28412478 | MS.gene53552:CDS |
| GCTGTTTATGTTCCTTCCCA+AGG | 0.490782 | 1.2:+28412123 | MS.gene53552:CDS |
| TGAGAGGGGTTTGACCTATG+AGG | 0.492063 | 1.2:+28410310 | MS.gene53552:CDS |
| TCCTGTTTCAAGCTTCACTA+AGG | 0.493440 | 1.2:-28412256 | None:intergenic |
| AACCTTGGTATTTCATTGGA+AGG | 0.494888 | 1.2:+28411049 | MS.gene53552:CDS |
| ACGCCACAACAGTGCTTCAA+AGG | 0.496812 | 1.2:-28412034 | None:intergenic |
| CCATCAATTCGCTAACACCT+TGG | 0.498413 | 1.2:-28412140 | None:intergenic |
| CTGAATTTATTGATGGTGAG+AGG | 0.498743 | 1.2:+28410294 | MS.gene53552:CDS |
| ATGCTTATTCTGATGCTGGT+TGG | 0.499363 | 1.2:+28410642 | MS.gene53552:CDS |
| GATCTTAATGTTGATGAGGC+GGG | 0.503068 | 1.2:+28410398 | MS.gene53552:CDS |
| TTGTTGGTGCTGTAAACCCT+AGG | 0.505292 | 1.2:+28410213 | MS.gene53552:CDS |
| TGCTCTGATTTGCAGAGCAC+TGG | 0.505293 | 1.2:-28411695 | None:intergenic |
| GGGTTTGAATAGGGAAGAAA+TGG | 0.505358 | 1.2:+28410184 | MS.gene53552:CDS |
| TCATCGCTGAATTTCACCCT+AGG | 0.505804 | 1.2:-28410230 | None:intergenic |
| TATACATCTCAGAAGCCCTC+TGG | 0.506094 | 1.2:-28411390 | None:intergenic |
| AGTGCCTTCTACATTTAAGC+AGG | 0.506565 | 1.2:+28412398 | MS.gene53552:CDS |
| ATTTAAGGAGTATGGAAATG+AGG | 0.508497 | 1.2:+28412431 | MS.gene53552:CDS |
| GACTCCGGCGCCGGATTCGG+AGG | 0.508700 | 1.2:+28410424 | MS.gene53552:CDS |
| ATTGTTATTATGTTCTTGGA+AGG | 0.509069 | 1.2:+28410933 | MS.gene53552:CDS |
| CATCGCTGAATTTCACCCTA+GGG | 0.509482 | 1.2:-28410229 | None:intergenic |
| GTTGGCACTTGAAGCTGCTG+AGG | 0.511145 | 1.2:+28410982 | MS.gene53552:CDS |
| CAATTCGACGCGAATCATGA+TGG | 0.511494 | 1.2:+28410161 | MS.gene53552:CDS |
| CTTCGTCGATTGTTGATGAG+AGG | 0.512023 | 1.2:+28410450 | MS.gene53552:CDS |
| TTCCAAGTTCGGTTTCCGGA+TGG | 0.512298 | 1.2:-28411827 | None:intergenic |
| AAGTTGAAGCAAGCTAAAGA+TGG | 0.512508 | 1.2:+28410596 | MS.gene53552:CDS |
| GATGGTTCAACTATGACAAA+TGG | 0.513195 | 1.2:-28411625 | None:intergenic |
| CAATGTGCATCAGCATAATC+CGG | 0.513831 | 1.2:-28411229 | None:intergenic |
| CCAACTGTCTTAAACTTGGA+TGG | 0.518220 | 1.2:-28411643 | None:intergenic |
| TCTGGAGGACCACCACAAAT+GGG | 0.519206 | 1.2:-28411994 | None:intergenic |
| GGCGGGGAAGACTCCGGCGC+CGG | 0.519573 | 1.2:+28410415 | MS.gene53552:CDS |
| TTATGTTTGATGATCCAGAT+TGG | 0.519667 | 1.2:+28412214 | MS.gene53552:CDS |
| CCATCCAAGTTTAAGACAGT+TGG | 0.521392 | 1.2:+28411643 | MS.gene53552:CDS |
| GATGCTCTTTATAATTTAGG+TGG | 0.522580 | 1.2:+28411343 | MS.gene53552:CDS |
| TTCTTCCGGAGTATCCCCAT+TGG | 0.523550 | 1.2:-28411599 | None:intergenic |
| AATTCGACGCGAATCATGAT+GGG | 0.523961 | 1.2:+28410162 | MS.gene53552:CDS |
| AACAAGGCTGTGTCGTTGCT+GGG | 0.526390 | 1.2:+28411457 | MS.gene53552:CDS |
| CCGGTGTCGTATTCTGGTAC+CGG | 0.527238 | 1.2:+28411790 | MS.gene53552:CDS |
| TGGGCAGTGTCGCCGAATCA+CGG | 0.531689 | 1.2:+28410512 | MS.gene53552:CDS |
| GGTGGATTGTATATGGACTT+GGG | 0.533769 | 1.2:+28411361 | MS.gene53552:CDS |
| CCACAGATTTACGTTAACCT+TGG | 0.534817 | 1.2:+28411034 | MS.gene53552:CDS |
| GTATTCTGGTACCGGAGTGC+CGG | 0.535859 | 1.2:+28411798 | MS.gene53552:CDS |
| TGAGGCTGGTGGAAATCAAT+GGG | 0.536232 | 1.2:+28411000 | MS.gene53552:CDS |
| GGTATTTCATTGGAAGGTGA+AGG | 0.539408 | 1.2:+28411055 | MS.gene53552:CDS |
| ATGTTTGATGATCCAGATTG+GGG | 0.540482 | 1.2:+28412216 | MS.gene53552:CDS |
| TTTAAGGAGTATGGAAATGA+GGG | 0.541065 | 1.2:+28412432 | MS.gene53552:CDS |
| TCGAACACAATACCGTGATT+CGG | 0.541163 | 1.2:-28410524 | None:intergenic |
| ATCTTAATGTTGATGAGGCG+GGG | 0.542510 | 1.2:+28410399 | MS.gene53552:CDS |
| GAGAGGGGTTTGACCTATGA+GGG | 0.544066 | 1.2:+28410311 | MS.gene53552:CDS |
| AGCGAATTGATGGAGGTTCG+TGG | 0.549361 | 1.2:+28412150 | MS.gene53552:CDS |
| GAGCACTTCAGAAGGTTGCT+AGG | 0.552630 | 1.2:+28411713 | MS.gene53552:CDS |
| TGGTGCTGGTGATGTTGATA+GGG | 0.553001 | 1.2:+28410355 | MS.gene53552:CDS |
| TGAGGATGAGAGGGCGATTG+AGG | 0.555091 | 1.2:+28411282 | MS.gene53552:CDS |
| TGAACATCAATTGTTTAAGG+AGG | 0.556104 | 1.2:+28410841 | MS.gene53552:CDS |
| TCGCCTTTGAAGCACTGTTG+TGG | 0.557851 | 1.2:+28412031 | MS.gene53552:CDS |
| TGATAAGACTACTGTGAGGC+AGG | 0.563005 | 1.2:+28411666 | MS.gene53552:CDS |
| AGGCTTTAATTAGTTTCAAG+AGG | 0.563231 | 1.2:+28410861 | MS.gene53552:CDS |
| AAGGCTATTGATTTGAAACC+GGG | 0.563307 | 1.2:+28411313 | MS.gene53552:CDS |
| CTGTGTGGCCGAATCATTGG+CGG | 0.563491 | 1.2:+28411425 | MS.gene53552:CDS |
| GTAGCGGCACACTGCGCACA+TGG | 0.564516 | 1.2:-28412301 | None:intergenic |
| GGCGATTGAGGTGTTTCAGA+AGG | 0.565595 | 1.2:+28411294 | MS.gene53552:CDS |
| TGATGAGGCGGGGAAGACTC+CGG | 0.565993 | 1.2:+28410409 | MS.gene53552:CDS |
| CTTGAAGCTGCTGAGGCTGG+TGG | 0.566338 | 1.2:+28410989 | MS.gene53552:CDS |
| GAAGCCTCCGAATCCGGCGC+CGG | 0.566975 | 1.2:-28410428 | None:intergenic |
| GTCGATTGTTGATGAGAGGA+TGG | 0.568424 | 1.2:+28410454 | MS.gene53552:CDS |
| AGAACTTATGATGATGGTGC+TGG | 0.568989 | 1.2:+28410341 | MS.gene53552:CDS |
| AGTTGAAGCAAGCTAAAGAT+GGG | 0.572882 | 1.2:+28410597 | MS.gene53552:CDS |
| CAATTACCGGCTCTAAAATG+AGG | 0.573747 | 1.2:-28410914 | None:intergenic |
| ATTCTTGCTCCCATTTGTGG+TGG | 0.574006 | 1.2:+28411985 | MS.gene53552:CDS |
| AAGAGGCACCAGATCGGAGA+AGG | 0.575767 | 1.2:+28410121 | MS.gene53552:CDS |
| GGCTTTAATTAGTTTCAAGA+GGG | 0.576280 | 1.2:+28410862 | MS.gene53552:CDS |
| TGATCTTAATGTTGATGAGG+CGG | 0.578590 | 1.2:+28410397 | MS.gene53552:CDS |
| TCTTGATCTTAATGTTGATG+AGG | 0.580621 | 1.2:+28410394 | MS.gene53552:CDS |
| TGTGTGGCCGAATCATTGGC+GGG | 0.581219 | 1.2:+28411426 | MS.gene53552:CDS |
| GCAAATCAGAGCACTTCAGA+AGG | 0.581238 | 1.2:+28411705 | MS.gene53552:CDS |
| TTTAGAGCTTTGAAACTGCT+AGG | 0.581584 | 1.2:+28411136 | MS.gene53552:CDS |
| TTGGCGGGCGCAGTTGAACA+AGG | 0.581691 | 1.2:+28411441 | MS.gene53552:CDS |
| CAAACCCAATGGGGATACTC+CGG | 0.586605 | 1.2:+28411594 | MS.gene53552:CDS |
| TGGAGACGTAGACACTTCAA+TGG | 0.586995 | 1.2:+28412170 | MS.gene53552:CDS |
| AAGTTGAAAATGGCGACAAG+AGG | 0.588366 | 1.2:+28410104 | None:intergenic |
| GAGTGGTTTGGGATGAATCA+GGG | 0.590750 | 1.2:+28410705 | MS.gene53552:CDS |
| TGCTGTTAAAGCGCTTGAAG+AGG | 0.590830 | 1.2:+28411192 | MS.gene53552:CDS |
| CTGGTTGGTCTCGCGAATTG+GGG | 0.593676 | 1.2:+28410657 | MS.gene53552:CDS |
| GGCTTTGCATGCTATGCGTG+AGG | 0.593677 | 1.2:+28411264 | MS.gene53552:CDS |
| TGAGATTTCGGATAAGAGAG+TGG | 0.596774 | 1.2:+28410688 | MS.gene53552:CDS |
| AGAAGCAGCGGACAGCTGCG+TGG | 0.598942 | 1.2:+28410492 | MS.gene53552:CDS |
| TGAATTTATTGATGGTGAGA+GGG | 0.600926 | 1.2:+28410295 | MS.gene53552:CDS |
| GAATTTATTGATGGTGAGAG+GGG | 0.601386 | 1.2:+28410296 | MS.gene53552:CDS |
| CACCTTCCAATGAAATACCA+AGG | 0.606948 | 1.2:-28411051 | None:intergenic |
| TGCTATGCGTGAGGATGAGA+GGG | 0.607406 | 1.2:+28411273 | MS.gene53552:CDS |
| GTTTCAAGCTTCACTAAGGT+AGG | 0.614099 | 1.2:-28412252 | None:intergenic |
| ATGCTATGCGTGAGGATGAG+AGG | 0.621923 | 1.2:+28411272 | MS.gene53552:CDS |
| AATGAGCGAACATGATGTGC+CGG | 0.625733 | 1.2:+28411771 | MS.gene53552:CDS |
| ACCATCAATAAATTCAGCAT+AGG | 0.627070 | 1.2:-28410288 | None:intergenic |
| GGCGACAAGAGGCACCAGAT+CGG | 0.627503 | 1.2:+28410115 | MS.gene53552:CDS |
| TTATCCGAAATCTCAGTCGA+AGG | 0.627881 | 1.2:-28410680 | None:intergenic |
| TGGCGTCCCATGAACGAAGA+CGG | 0.628298 | 1.2:+28412051 | MS.gene53552:CDS |
| TGGACTTGGGTAGGTTCCAG+AGG | 0.630541 | 1.2:+28411374 | MS.gene53552:CDS |
| TTCAAAGCTCTAAAATGCGT+AGG | 0.630809 | 1.2:-28411127 | None:intergenic |
| GGACTTGGGTAGGTTCCAGA+GGG | 0.631626 | 1.2:+28411375 | MS.gene53552:CDS |
| AATCAACGCAATTCTCGATG+AGG | 0.631687 | 1.2:+28410256 | MS.gene53552:CDS |
| TGTAACCAATGCTACAGCGA+AGG | 0.633386 | 1.2:+28412372 | MS.gene53552:CDS |
| TGGAAGGTATAAGGAAGCGA+AGG | 0.636944 | 1.2:+28410949 | MS.gene53552:CDS |
| TGTTTGATGATCCAGATTGG+GGG | 0.637010 | 1.2:+28412217 | MS.gene53552:CDS |
| AGGTGTTAGCGAATTGATGG+AGG | 0.638521 | 1.2:+28412143 | MS.gene53552:CDS |
| TGTTGGTGCTGTAAACCCTA+GGG | 0.640534 | 1.2:+28410214 | MS.gene53552:CDS |
| CTGTGAAAGCCATAAATGAG+AGG | 0.642882 | 1.2:+28411902 | MS.gene53552:CDS |
| TAAAGAGCATCAATATGACC+CGG | 0.642930 | 1.2:-28411331 | None:intergenic |
| CCAAGGTTAACGTAAATCTG+TGG | 0.646831 | 1.2:-28411034 | None:intergenic |
| TAGGTTGAGTCGTTGTAATG+TGG | 0.652395 | 1.2:+28411732 | MS.gene53552:CDS |
| ATTCGACGCGAATCATGATG+GGG | 0.660251 | 1.2:+28410163 | MS.gene53552:CDS |
| GCGAACCGATAATAGGGTAG+CGG | 0.667482 | 1.2:-28412317 | None:intergenic |
| GTATTGTGTTCGATGAGACG+TGG | 0.668042 | 1.2:+28410534 | MS.gene53552:CDS |
| TTGAGTCGCAGAAGAAGCAG+CGG | 0.676108 | 1.2:+28410480 | MS.gene53552:CDS |
| TTCGACGCGAATCATGATGG+GGG | 0.686689 | 1.2:+28410164 | MS.gene53552:CDS |
| AATTCGCTAACACCTTGGGA+AGG | 0.689041 | 1.2:-28412135 | None:intergenic |
| AAAGAAGAACAAACCCAATG+GGG | 0.692654 | 1.2:+28411585 | MS.gene53552:CDS |
| CCGGTACCAGAATACGACAC+CGG | 0.720876 | 1.2:-28411790 | None:intergenic |
| ACAGGAGATAGAAACCGACA+TGG | 0.728698 | 1.2:+28412273 | MS.gene53552:CDS |
| TGCTTGTGAGTATTATAGGG+AGG | 0.742573 | 1.2:+28411090 | MS.gene53552:CDS |
| GATTGTTGATGAGAGGATGG+CGG | 0.753142 | 1.2:+28410457 | MS.gene53552:CDS |
| TTGGTGATAAGACTACTGTG+AGG | 0.814181 | 1.2:+28411662 | MS.gene53552:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAACATAATAACAATTAC+CGG | - | chr1.2:28410930-28410949 | None:intergenic | 20.0% |
| !! | ATTGATGCTCTTTATAATTT+AGG | + | chr1.2:28411340-28411359 | MS.gene53552:CDS | 20.0% |
| !!! | ATTTAGAGATTTTGATAAAG+AGG | + | chr1.2:28410570-28410589 | MS.gene53552:CDS | 20.0% |
| ! | GTATGAACATCAATTGTTTA+AGG | + | chr1.2:28410838-28410857 | MS.gene53552:CDS | 25.0% |
| !! | AGCATTGAAAATGACAAATA+GGG | + | chr1.2:28411519-28411538 | MS.gene53552:CDS | 25.0% |
| !! | ATTGTTATTATGTTCTTGGA+AGG | + | chr1.2:28410933-28410952 | MS.gene53552:CDS | 25.0% |
| !! | GGTAATTGTTATTATGTTCT+TGG | + | chr1.2:28410929-28410948 | MS.gene53552:CDS | 25.0% |
| !!! | AAGCATTGAAAATGACAAAT+AGG | + | chr1.2:28411518-28411537 | MS.gene53552:CDS | 25.0% |
| !!! | TAATTTAGGTGGATTGTATA+TGG | + | chr1.2:28411354-28411373 | MS.gene53552:CDS | 25.0% |
| AAAAAGAAGAACAAACCCAA+TGG | + | chr1.2:28411583-28411602 | MS.gene53552:CDS | 30.0% | |
| AAAAGAAGAACAAACCCAAT+GGG | + | chr1.2:28411584-28411603 | MS.gene53552:CDS | 30.0% | |
| ACCATCAATAAATTCAGCAT+AGG | - | chr1.2:28410291-28410310 | None:intergenic | 30.0% | |
| ACCTATGCTGAATTTATTGA+TGG | + | chr1.2:28410287-28410306 | MS.gene53552:CDS | 30.0% | |
| AGAAAGAATCCTCTCATTTA+TGG | - | chr1.2:28411914-28411933 | None:intergenic | 30.0% | |
| GATGCTCTTTATAATTTAGG+TGG | + | chr1.2:28411343-28411362 | MS.gene53552:CDS | 30.0% | |
| GCTAAAGATGGGAAAATTAA+AGG | + | chr1.2:28410608-28410627 | MS.gene53552:CDS | 30.0% | |
| TCTTGATCTTAATGTTGATG+AGG | + | chr1.2:28410394-28410413 | MS.gene53552:CDS | 30.0% | |
| TGAACATCAATTGTTTAAGG+AGG | + | chr1.2:28410841-28410860 | MS.gene53552:CDS | 30.0% | |
| ! | AGGCTTTAATTAGTTTCAAG+AGG | + | chr1.2:28410861-28410880 | MS.gene53552:CDS | 30.0% |
| ! | ATTTAAGGAGTATGGAAATG+AGG | + | chr1.2:28412431-28412450 | MS.gene53552:CDS | 30.0% |
| ! | GGCTTTAATTAGTTTCAAGA+GGG | + | chr1.2:28410862-28410881 | MS.gene53552:CDS | 30.0% |
| ! | TATGTTTGATGATCCAGATT+GGG | + | chr1.2:28412215-28412234 | MS.gene53552:CDS | 30.0% |
| ! | TTATGTTCTTGGAAGGTATA+AGG | + | chr1.2:28410940-28410959 | MS.gene53552:CDS | 30.0% |
| ! | TTATGTTTGATGATCCAGAT+TGG | + | chr1.2:28412214-28412233 | MS.gene53552:CDS | 30.0% |
| ! | TTTAAGGAGTATGGAAATGA+GGG | + | chr1.2:28412432-28412451 | MS.gene53552:CDS | 30.0% |
| !! | CTTTCTGTTTTGGATGAAAA+TGG | + | chr1.2:28411928-28411947 | MS.gene53552:CDS | 30.0% |
| !! | CTTTTGAGAACTTATGATGA+TGG | + | chr1.2:28410335-28410354 | MS.gene53552:CDS | 30.0% |
| !! | TAATGTGGAGCTTTTGAAAA+AGG | + | chr1.2:28411747-28411766 | MS.gene53552:CDS | 30.0% |
| !! | TGAATTTATTGATGGTGAGA+GGG | + | chr1.2:28410295-28410314 | MS.gene53552:CDS | 30.0% |
| !!! | TGATTATGCTGTTTTTGTGA+AGG | + | chr1.2:28410730-28410749 | MS.gene53552:CDS | 30.0% |
| AAAGAAGAACAAACCCAATG+GGG | + | chr1.2:28411585-28411604 | MS.gene53552:CDS | 35.0% | |
| AACCTTGGTATTTCATTGGA+AGG | + | chr1.2:28411049-28411068 | MS.gene53552:CDS | 35.0% | |
| AAGTTGAAGCAAGCTAAAGA+TGG | + | chr1.2:28410596-28410615 | MS.gene53552:CDS | 35.0% | |
| AATTGCAACCTGTTGATGTT+AGG | + | chr1.2:28410891-28410910 | MS.gene53552:CDS | 35.0% | |
| AGTTGAAGCAAGCTAAAGAT+GGG | + | chr1.2:28410597-28410616 | MS.gene53552:CDS | 35.0% | |
| ATCACCAACTGTCTTAAACT+TGG | - | chr1.2:28411650-28411669 | None:intergenic | 35.0% | |
| CAGATACATCCAGTTGTTAA+GGG | + | chr1.2:28412101-28412120 | MS.gene53552:CDS | 35.0% | |
| CGAAGAATTTCTTCCAAGTT+CGG | - | chr1.2:28411841-28411860 | None:intergenic | 35.0% | |
| CGTTAACCTTGGTATTTCAT+TGG | + | chr1.2:28411045-28411064 | MS.gene53552:CDS | 35.0% | |
| GAGTACAGATTTAAGGAGTA+TGG | + | chr1.2:28412423-28412442 | MS.gene53552:CDS | 35.0% | |
| GAGTGCTTGTGAGTATTATA+GGG | + | chr1.2:28411087-28411106 | MS.gene53552:CDS | 35.0% | |
| GATGGTTCAACTATGACAAA+TGG | - | chr1.2:28411628-28411647 | None:intergenic | 35.0% | |
| GCAAGTACACTTATCTTTCA+TGG | - | chr1.2:28412463-28412482 | None:intergenic | 35.0% | |
| TCTTCCTGCTTAAATGTAGA+AGG | - | chr1.2:28412405-28412424 | None:intergenic | 35.0% | |
| TGAGTGCTTGTGAGTATTAT+AGG | + | chr1.2:28411086-28411105 | MS.gene53552:CDS | 35.0% | |
| TTTGATGCTTATTCTGATGC+TGG | + | chr1.2:28410638-28410657 | MS.gene53552:CDS | 35.0% | |
| ! | AGAAGCCAAAAAAGCTTTGA+AGG | + | chr1.2:28411495-28411514 | MS.gene53552:CDS | 35.0% |
| ! | ATGTTTGATGATCCAGATTG+GGG | + | chr1.2:28412216-28412235 | MS.gene53552:CDS | 35.0% |
| ! | TCAAGAGAAGAAGCTTTTGA+TGG | + | chr1.2:28410791-28410810 | MS.gene53552:CDS | 35.0% |
| ! | TGAGAGGATTCTTTCTGTTT+TGG | + | chr1.2:28411918-28411937 | MS.gene53552:CDS | 35.0% |
| ! | TGAGATGTATACGAGAGTTT+TGG | + | chr1.2:28411402-28411421 | MS.gene53552:CDS | 35.0% |
| ! | TGATCTTAATGTTGATGAGG+CGG | + | chr1.2:28410397-28410416 | MS.gene53552:CDS | 35.0% |
| ! | TTTGATGGACATATGGCAAT+TGG | + | chr1.2:28410806-28410825 | MS.gene53552:CDS | 35.0% |
| !! | AAGGCTATTGATTTGAAACC+GGG | + | chr1.2:28411313-28411332 | MS.gene53552:CDS | 35.0% |
| !! | AGAAGCTTTTGATGGACATA+TGG | + | chr1.2:28410799-28410818 | MS.gene53552:CDS | 35.0% |
| !! | AGAGGCTATTTTCATGAAAC+CGG | + | chr1.2:28411210-28411229 | MS.gene53552:CDS | 35.0% |
| !! | CTGAATTTATTGATGGTGAG+AGG | + | chr1.2:28410294-28410313 | MS.gene53552:CDS | 35.0% |
| !! | CTTGCTTTAACTTGCAATCA+CGG | + | chr1.2:28412478-28412497 | MS.gene53552:CDS | 35.0% |
| !! | GAAGGCTATTGATTTGAAAC+CGG | + | chr1.2:28411312-28411331 | MS.gene53552:CDS | 35.0% |
| !! | GAATTTATTGATGGTGAGAG+GGG | + | chr1.2:28410296-28410315 | MS.gene53552:CDS | 35.0% |
| !! | GTTTTGGATGAAAATGGTTC+AGG | + | chr1.2:28411934-28411953 | MS.gene53552:CDS | 35.0% |
| !! | TAAAGAGCATCAATATGACC+CGG | - | chr1.2:28411334-28411353 | None:intergenic | 35.0% |
| !! | TTCAAAGCTCTAAAATGCGT+AGG | - | chr1.2:28411130-28411149 | None:intergenic | 35.0% |
| !! | TTTAGAGCTTTGAAACTGCT+AGG | + | chr1.2:28411136-28411155 | MS.gene53552:CDS | 35.0% |
| !!! | TGCTTCCTTCAAAGCTTTTT+TGG | - | chr1.2:28411503-28411522 | None:intergenic | 35.0% |
| AAATGAGGCCTAACATCAAC+AGG | - | chr1.2:28410902-28410921 | None:intergenic | 40.0% | |
| AATCAACGCAATTCTCGATG+AGG | + | chr1.2:28410256-28410275 | MS.gene53552:CDS | 40.0% | |
| AATTCGACGCGAATCATGAT+GGG | + | chr1.2:28410162-28410181 | MS.gene53552:CDS | 40.0% | |
| ACCTTAGTGAAGCTTGAAAC+AGG | + | chr1.2:28412255-28412274 | MS.gene53552:CDS | 40.0% | |
| AGTGCCTTCTACATTTAAGC+AGG | + | chr1.2:28412398-28412417 | MS.gene53552:CDS | 40.0% | |
| AGTTCTCAAAAGACCCTCAT+AGG | - | chr1.2:28410327-28410346 | None:intergenic | 40.0% | |
| ATAATACCAAACCCCCAATC+TGG | - | chr1.2:28412231-28412250 | None:intergenic | 40.0% | |
| ATCATGATTCGCGTCGAATT+GGG | - | chr1.2:28410162-28410181 | None:intergenic | 40.0% | |
| ATGACAAATGGCGATTCTTC+CGG | - | chr1.2:28411616-28411635 | None:intergenic | 40.0% | |
| ATGCTTATTCTGATGCTGGT+TGG | + | chr1.2:28410642-28410661 | MS.gene53552:CDS | 40.0% | |
| CAATGTGCATCAGCATAATC+CGG | - | chr1.2:28411232-28411251 | None:intergenic | 40.0% | |
| CACCTTCCAATGAAATACCA+AGG | - | chr1.2:28411054-28411073 | None:intergenic | 40.0% | |
| CATAAACAGCCCTTAACAAC+TGG | - | chr1.2:28412113-28412132 | None:intergenic | 40.0% | |
| CATCAATTCGCTAACACCTT+GGG | - | chr1.2:28412142-28412161 | None:intergenic | 40.0% | |
| CCAACTGTCTTAAACTTGGA+TGG | - | chr1.2:28411646-28411665 | None:intergenic | 40.0% | |
| CCAAGGTTAACGTAAATCTG+TGG | - | chr1.2:28411037-28411056 | None:intergenic | 40.0% | |
| CCACAGATTTACGTTAACCT+TGG | + | chr1.2:28411034-28411053 | MS.gene53552:CDS | 40.0% | |
| CCAGATACATCCAGTTGTTA+AGG | + | chr1.2:28412100-28412119 | MS.gene53552:CDS | 40.0% | |
| CCTTAACAACTGGATGTATC+TGG | - | chr1.2:28412103-28412122 | None:intergenic | 40.0% | |
| CTGTGAAAGCCATAAATGAG+AGG | + | chr1.2:28411902-28411921 | MS.gene53552:CDS | 40.0% | |
| GATTGTATATGGACTTGGGT+AGG | + | chr1.2:28411365-28411384 | MS.gene53552:CDS | 40.0% | |
| GGGTTTGAATAGGGAAGAAA+TGG | + | chr1.2:28410184-28410203 | MS.gene53552:CDS | 40.0% | |
| GGTATTTCATTGGAAGGTGA+AGG | + | chr1.2:28411055-28411074 | MS.gene53552:CDS | 40.0% | |
| GTTTCAAGCTTCACTAAGGT+AGG | - | chr1.2:28412255-28412274 | None:intergenic | 40.0% | |
| TAAAGCGCGAACCGATAATA+GGG | - | chr1.2:28412326-28412345 | None:intergenic | 40.0% | |
| TCCTGTTTCAAGCTTCACTA+AGG | - | chr1.2:28412259-28412278 | None:intergenic | 40.0% | |
| TCGAACACAATACCGTGATT+CGG | - | chr1.2:28410527-28410546 | None:intergenic | 40.0% | |
| TGAGATTTCGGATAAGAGAG+TGG | + | chr1.2:28410688-28410707 | MS.gene53552:CDS | 40.0% | |
| TGCTTGTGAGTATTATAGGG+AGG | + | chr1.2:28411090-28411109 | MS.gene53552:CDS | 40.0% | |
| TTAAAGCGCGAACCGATAAT+AGG | - | chr1.2:28412327-28412346 | None:intergenic | 40.0% | |
| TTATCCGAAATCTCAGTCGA+AGG | - | chr1.2:28410683-28410702 | None:intergenic | 40.0% | |
| TTCATTGGAAGGTGAAGGTA+TGG | + | chr1.2:28411060-28411079 | MS.gene53552:CDS | 40.0% | |
| TTCGGATAAGAGAGTGGTTT+GGG | + | chr1.2:28410694-28410713 | MS.gene53552:CDS | 40.0% | |
| TTTCGGATAAGAGAGTGGTT+TGG | + | chr1.2:28410693-28410712 | MS.gene53552:CDS | 40.0% | |
| TTTCTTCCAAGTTCGGTTTC+CGG | - | chr1.2:28411834-28411853 | None:intergenic | 40.0% | |
| ! | AGCGAAGGAAGAGTTTTTGT+TGG | + | chr1.2:28410964-28410983 | MS.gene53552:CDS | 40.0% |
| ! | ATCATGATGGGGGTTTGAAT+AGG | + | chr1.2:28410174-28410193 | MS.gene53552:CDS | 40.0% |
| ! | ATCTTAATGTTGATGAGGCG+GGG | + | chr1.2:28410399-28410418 | MS.gene53552:CDS | 40.0% |
| ! | CCATCCAAGTTTAAGACAGT+TGG | + | chr1.2:28411643-28411662 | MS.gene53552:CDS | 40.0% |
| ! | GATCTTAATGTTGATGAGGC+GGG | + | chr1.2:28410398-28410417 | MS.gene53552:CDS | 40.0% |
| ! | GCAGGAAGAGTACAGATTTA+AGG | + | chr1.2:28412416-28412435 | MS.gene53552:CDS | 40.0% |
| ! | GTTTTTGTGAAGGAAGTAGG+TGG | + | chr1.2:28410740-28410759 | MS.gene53552:CDS | 40.0% |
| ! | TAGGTTGAGTCGTTGTAATG+TGG | + | chr1.2:28411732-28411751 | MS.gene53552:CDS | 40.0% |
| ! | TCATGATGGGGGTTTGAATA+GGG | + | chr1.2:28410175-28410194 | MS.gene53552:CDS | 40.0% |
| ! | TGTTTGATGATCCAGATTGG+GGG | + | chr1.2:28412217-28412236 | MS.gene53552:CDS | 40.0% |
| ! | TTGGTGATAAGACTACTGTG+AGG | + | chr1.2:28411662-28411681 | MS.gene53552:CDS | 40.0% |
| !! | AGAACTTATGATGATGGTGC+TGG | + | chr1.2:28410341-28410360 | MS.gene53552:CDS | 40.0% |
| !! | AGGTGGATTGTATATGGACT+TGG | + | chr1.2:28411360-28411379 | MS.gene53552:CDS | 40.0% |
| !! | CAATTACCGGCTCTAAAATG+AGG | - | chr1.2:28410917-28410936 | None:intergenic | 40.0% |
| !! | GGTGGATTGTATATGGACTT+GGG | + | chr1.2:28411361-28411380 | MS.gene53552:CDS | 40.0% |
| !! | TATTATCGGTTCGCGCTTTA+AGG | + | chr1.2:28412326-28412345 | MS.gene53552:CDS | 40.0% |
| !!! | GCTGTTTTTGTGAAGGAAGT+AGG | + | chr1.2:28410737-28410756 | MS.gene53552:CDS | 40.0% |
| AATGAGCGAACATGATGTGC+CGG | + | chr1.2:28411771-28411790 | MS.gene53552:CDS | 45.0% | |
| AATTCGCTAACACCTTGGGA+AGG | - | chr1.2:28412138-28412157 | None:intergenic | 45.0% | |
| ACAGGAGATAGAAACCGACA+TGG | + | chr1.2:28412273-28412292 | MS.gene53552:CDS | 45.0% | |
| AGGTGTTAGCGAATTGATGG+AGG | + | chr1.2:28412143-28412162 | MS.gene53552:CDS | 45.0% | |
| ATTAGCACCGTCTTCGTTCA+TGG | - | chr1.2:28412061-28412080 | None:intergenic | 45.0% | |
| ATTCGACGCGAATCATGATG+GGG | + | chr1.2:28410163-28410182 | MS.gene53552:CDS | 45.0% | |
| ATTCTTGCTCCCATTTGTGG+TGG | + | chr1.2:28411985-28412004 | MS.gene53552:CDS | 45.0% | |
| CAATTCGACGCGAATCATGA+TGG | + | chr1.2:28410161-28410180 | MS.gene53552:CDS | 45.0% | |
| CATCATGATTCGCGTCGAAT+TGG | - | chr1.2:28410163-28410182 | None:intergenic | 45.0% | |
| CATCGCTGAATTTCACCCTA+GGG | - | chr1.2:28410232-28410251 | None:intergenic | 45.0% | |
| CCATCAATTCGCTAACACCT+TGG | - | chr1.2:28412143-28412162 | None:intergenic | 45.0% | |
| GCTATTCTTGCTCCCATTTG+TGG | + | chr1.2:28411982-28412001 | MS.gene53552:CDS | 45.0% | |
| GCTGTTTATGTTCCTTCCCA+AGG | + | chr1.2:28412123-28412142 | MS.gene53552:CDS | 45.0% | |
| GGTTCAGGCAGATTAGATCT+TGG | + | chr1.2:28411949-28411968 | MS.gene53552:CDS | 45.0% | |
| GTATTGTGTTCGATGAGACG+TGG | + | chr1.2:28410534-28410553 | MS.gene53552:CDS | 45.0% | |
| TATACATCTCAGAAGCCCTC+TGG | - | chr1.2:28411393-28411412 | None:intergenic | 45.0% | |
| TCATCGCTGAATTTCACCCT+AGG | - | chr1.2:28410233-28410252 | None:intergenic | 45.0% | |
| TGAGGCTGGTGGAAATCAAT+GGG | + | chr1.2:28411000-28411019 | MS.gene53552:CDS | 45.0% | |
| TGATAAGACTACTGTGAGGC+AGG | + | chr1.2:28411666-28411685 | MS.gene53552:CDS | 45.0% | |
| TGCTGATGCACATTGTGATC+TGG | + | chr1.2:28411237-28411256 | MS.gene53552:CDS | 45.0% | |
| TGGAGACGTAGACACTTCAA+TGG | + | chr1.2:28412170-28412189 | MS.gene53552:CDS | 45.0% | |
| TGTAACCAATGCTACAGCGA+AGG | + | chr1.2:28412372-28412391 | MS.gene53552:CDS | 45.0% | |
| TTAGCACCGTCTTCGTTCAT+GGG | - | chr1.2:28412060-28412079 | None:intergenic | 45.0% | |
| TTTCGGCGTAGGGGAATATA+AGG | + | chr1.2:28411168-28411187 | MS.gene53552:CDS | 45.0% | |
| ! | AGAGTGGTTTGGGATGAATC+AGG | + | chr1.2:28410704-28410723 | MS.gene53552:CDS | 45.0% |
| ! | ATCCTTTTACGTCTCTCTGG+AGG | - | chr1.2:28412012-28412031 | None:intergenic | 45.0% |
| ! | CCAAGGTGTTAGCGAATTGA+TGG | + | chr1.2:28412140-28412159 | MS.gene53552:CDS | 45.0% |
| ! | CTGAAGCCAGACACTTTTCA+AGG | + | chr1.2:28411877-28411896 | MS.gene53552:CDS | 45.0% |
| ! | CTGCTAGGTAGTGCTCTTTT+CGG | + | chr1.2:28411151-28411170 | MS.gene53552:CDS | 45.0% |
| ! | CTTCGTCGATTGTTGATGAG+AGG | + | chr1.2:28410450-28410469 | MS.gene53552:CDS | 45.0% |
| ! | CTTTTCCTTCGCTGTAGCAT+TGG | - | chr1.2:28412380-28412399 | None:intergenic | 45.0% |
| ! | GAGTGGTTTGGGATGAATCA+GGG | + | chr1.2:28410705-28410724 | MS.gene53552:CDS | 45.0% |
| ! | GATTGTTGATGAGAGGATGG+CGG | + | chr1.2:28410457-28410476 | MS.gene53552:CDS | 45.0% |
| ! | GCAAATCAGAGCACTTCAGA+AGG | + | chr1.2:28411705-28411724 | MS.gene53552:CDS | 45.0% |
| ! | GTCGATTGTTGATGAGAGGA+TGG | + | chr1.2:28410454-28410473 | MS.gene53552:CDS | 45.0% |
| ! | TGCACATTGTGATCTGGCTT+CGG | + | chr1.2:28411243-28411262 | MS.gene53552:CDS | 45.0% |
| ! | TGCTGTTAAAGCGCTTGAAG+AGG | + | chr1.2:28411192-28411211 | MS.gene53552:CDS | 45.0% |
| ! | TGGAAGGTATAAGGAAGCGA+AGG | + | chr1.2:28410949-28410968 | MS.gene53552:CDS | 45.0% |
| !! | ACAGCTCCTTGAAAAGTGTC+TGG | - | chr1.2:28411886-28411905 | None:intergenic | 45.0% |
| !! | ATGGTGCTGGTGATGTTGAT+AGG | + | chr1.2:28410354-28410373 | MS.gene53552:CDS | 45.0% |
| !! | GGTTTCCGGATGGATTTTTC+CGG | - | chr1.2:28411820-28411839 | None:intergenic | 45.0% |
| !! | TGGTGCTGGTGATGTTGATA+GGG | + | chr1.2:28410355-28410374 | MS.gene53552:CDS | 45.0% |
| !! | TGTTGGTGCTGTAAACCCTA+GGG | + | chr1.2:28410214-28410233 | MS.gene53552:CDS | 45.0% |
| !! | TTGTTGGTGCTGTAAACCCT+AGG | + | chr1.2:28410213-28410232 | MS.gene53552:CDS | 45.0% |
| !!! | ATACGAGAGTTTTGGCTGTG+TGG | + | chr1.2:28411410-28411429 | MS.gene53552:CDS | 45.0% |
| !!! | GTTAGGCCTCATTTTAGAGC+CGG | + | chr1.2:28410908-28410927 | MS.gene53552:CDS | 45.0% |
| ACGCCACAACAGTGCTTCAA+AGG | - | chr1.2:28412037-28412056 | None:intergenic | 50.0% | |
| AGCGAATTGATGGAGGTTCG+TGG | + | chr1.2:28412150-28412169 | MS.gene53552:CDS | 50.0% | |
| ATCCATCCGGAAACCGAACT+TGG | + | chr1.2:28411825-28411844 | MS.gene53552:CDS | 50.0% | |
| ATGCTATGCGTGAGGATGAG+AGG | + | chr1.2:28411272-28411291 | MS.gene53552:CDS | 50.0% | |
| CAAACCCAATGGGGATACTC+CGG | + | chr1.2:28411594-28411613 | MS.gene53552:CDS | 50.0% | |
| CTGAGGCTGGTGGAAATCAA+TGG | + | chr1.2:28410999-28411018 | MS.gene53552:CDS | 50.0% | |
| GAAGAAATGGCGTCGCTTGT+TGG | + | chr1.2:28410197-28410216 | MS.gene53552:CDS | 50.0% | |
| GAGAGGGGTTTGACCTATGA+GGG | + | chr1.2:28410311-28410330 | MS.gene53552:CDS | 50.0% | |
| GAGCACTTCAGAAGGTTGCT+AGG | + | chr1.2:28411713-28411732 | MS.gene53552:CDS | 50.0% | |
| GATGATCCAGATTGGGGGTT+TGG | + | chr1.2:28412222-28412241 | MS.gene53552:CDS | 50.0% | |
| GCGAACCGATAATAGGGTAG+CGG | - | chr1.2:28412320-28412339 | None:intergenic | 50.0% | |
| GTCCTCCAGAGAGACGTAAA+AGG | + | chr1.2:28412007-28412026 | MS.gene53552:CDS | 50.0% | |
| TCTGGAGGACCACCACAAAT+GGG | - | chr1.2:28411997-28412016 | None:intergenic | 50.0% | |
| TGAGAGGGGTTTGACCTATG+AGG | + | chr1.2:28410310-28410329 | MS.gene53552:CDS | 50.0% | |
| TGCTATGCGTGAGGATGAGA+GGG | + | chr1.2:28411273-28411292 | MS.gene53552:CDS | 50.0% | |
| TTCCAAGTTCGGTTTCCGGA+TGG | - | chr1.2:28411830-28411849 | None:intergenic | 50.0% | |
| TTCGACGCGAATCATGATGG+GGG | + | chr1.2:28410164-28410183 | MS.gene53552:CDS | 50.0% | |
| TTGAGTCGCAGAAGAAGCAG+CGG | + | chr1.2:28410480-28410499 | MS.gene53552:CDS | 50.0% | |
| ! | AACAAGGCTGTGTCGTTGCT+GGG | + | chr1.2:28411457-28411476 | MS.gene53552:CDS | 50.0% |
| ! | GCGATCCTTTTACGTCTCTC+TGG | - | chr1.2:28412015-28412034 | None:intergenic | 50.0% |
| ! | GGCGATTGAGGTGTTTCAGA+AGG | + | chr1.2:28411294-28411313 | MS.gene53552:CDS | 50.0% |
| ! | GTAGTGCTCTTTTCGGCGTA+GGG | + | chr1.2:28411158-28411177 | MS.gene53552:CDS | 50.0% |
| ! | GTGTGCCGCTACCCTATTAT+CGG | + | chr1.2:28412312-28412331 | MS.gene53552:CDS | 50.0% |
| ! | TAGTGCTCTTTTCGGCGTAG+GGG | + | chr1.2:28411159-28411178 | MS.gene53552:CDS | 50.0% |
| ! | TCTTCCGGAGTATCCCCATT+GGG | - | chr1.2:28411601-28411620 | None:intergenic | 50.0% |
| ! | TGCTCTGATTTGCAGAGCAC+TGG | - | chr1.2:28411698-28411717 | None:intergenic | 50.0% |
| ! | TTCTTCCGGAGTATCCCCAT+TGG | - | chr1.2:28411602-28411621 | None:intergenic | 50.0% |
| !! | CGCACATGGTTTTGCCATGT+CGG | - | chr1.2:28412290-28412309 | None:intergenic | 50.0% |
| !! | GAGTGCCGGAAAAATCCATC+CGG | + | chr1.2:28411812-28411831 | MS.gene53552:CDS | 50.0% |
| !! | GATGGATTTTTCCGGCACTC+CGG | - | chr1.2:28411812-28411831 | None:intergenic | 50.0% |
| !! | TCGCCTTTGAAGCACTGTTG+TGG | + | chr1.2:28412031-28412050 | MS.gene53552:CDS | 50.0% |
| AACTGCGCCCGCCAATGATT+CGG | - | chr1.2:28411436-28411455 | None:intergenic | 55.0% | |
| CCGGTACCAGAATACGACAC+CGG | - | chr1.2:28411793-28411812 | None:intergenic | 55.0% | |
| CTGTGTGGCCGAATCATTGG+CGG | + | chr1.2:28411425-28411444 | MS.gene53552:CDS | 55.0% | |
| GACGAAGAAGCCTCCGAATC+CGG | - | chr1.2:28410437-28410456 | None:intergenic | 55.0% | |
| GGACTTGGGTAGGTTCCAGA+GGG | + | chr1.2:28411375-28411394 | MS.gene53552:CDS | 55.0% | |
| GGCTTTGCATGCTATGCGTG+AGG | + | chr1.2:28411264-28411283 | MS.gene53552:CDS | 55.0% | |
| GGGGCCTTCGACTGAGATTT+CGG | + | chr1.2:28410676-28410695 | MS.gene53552:CDS | 55.0% | |
| GTTGGCACTTGAAGCTGCTG+AGG | + | chr1.2:28410982-28411001 | MS.gene53552:CDS | 55.0% | |
| TGAGGATGAGAGGGCGATTG+AGG | + | chr1.2:28411282-28411301 | MS.gene53552:CDS | 55.0% | |
| TGGACTTGGGTAGGTTCCAG+AGG | + | chr1.2:28411374-28411393 | MS.gene53552:CDS | 55.0% | |
| TGGCGTCCCATGAACGAAGA+CGG | + | chr1.2:28412051-28412070 | MS.gene53552:CDS | 55.0% | |
| TGGCTGTGTGGCCGAATCAT+TGG | + | chr1.2:28411422-28411441 | MS.gene53552:CDS | 55.0% | |
| TGTGTGGCCGAATCATTGGC+GGG | + | chr1.2:28411426-28411445 | MS.gene53552:CDS | 55.0% | |
| ! | CTCTGGAGGACCACCACAAA+TGG | - | chr1.2:28411998-28412017 | None:intergenic | 55.0% |
| ! | GAACAAGGCTGTGTCGTTGC+TGG | + | chr1.2:28411456-28411475 | MS.gene53552:CDS | 55.0% |
| ! | GGTAGTGCTCTTTTCGGCGT+AGG | + | chr1.2:28411157-28411176 | MS.gene53552:CDS | 55.0% |
| ! | GTATTCTGGTACCGGAGTGC+CGG | + | chr1.2:28411798-28411817 | MS.gene53552:CDS | 55.0% |
| !! | AAGAGGCACCAGATCGGAGA+AGG | + | chr1.2:28410121-28410140 | MS.gene53552:CDS | 55.0% |
| !! | CCGGTGTCGTATTCTGGTAC+CGG | + | chr1.2:28411790-28411809 | MS.gene53552:CDS | 55.0% |
| !! | CTGGTTGGTCTCGCGAATTG+GGG | + | chr1.2:28410657-28410676 | MS.gene53552:CDS | 55.0% |
| !! | GATGTGCCGGTGTCGTATTC+TGG | + | chr1.2:28411784-28411803 | MS.gene53552:CDS | 55.0% |
| !! | GCTGGTTGGTCTCGCGAATT+GGG | + | chr1.2:28410656-28410675 | MS.gene53552:CDS | 55.0% |
| !! | TGCTGGTTGGTCTCGCGAAT+TGG | + | chr1.2:28410655-28410674 | MS.gene53552:CDS | 55.0% |
| CTTGAAGCTGCTGAGGCTGG+TGG | + | chr1.2:28410989-28411008 | MS.gene53552:CDS | 60.0% | |
| GCACTTGAAGCTGCTGAGGC+TGG | + | chr1.2:28410986-28411005 | MS.gene53552:CDS | 60.0% | |
| TCGTCGCACCTTCTCCGATC+TGG | - | chr1.2:28410132-28410151 | None:intergenic | 60.0% | |
| TGATGAGGCGGGGAAGACTC+CGG | + | chr1.2:28410409-28410428 | MS.gene53552:CDS | 60.0% | |
| TGGGCAGTGTCGCCGAATCA+CGG | + | chr1.2:28410512-28410531 | MS.gene53552:CDS | 60.0% | |
| ! | TTGGCGGGCGCAGTTGAACA+AGG | + | chr1.2:28411441-28411460 | MS.gene53552:CDS | 60.0% |
| !! | GGCGACAAGAGGCACCAGAT+CGG | + | chr1.2:28410115-28410134 | MS.gene53552:CDS | 60.0% |
| AGAAGCAGCGGACAGCTGCG+TGG | + | chr1.2:28410492-28410511 | MS.gene53552:CDS | 65.0% | |
| GAAGCAGCGGACAGCTGCGT+GGG | + | chr1.2:28410493-28410512 | MS.gene53552:CDS | 65.0% | |
| GTAGCGGCACACTGCGCACA+TGG | - | chr1.2:28412304-28412323 | None:intergenic | 65.0% | |
| ! | GAAGACTCCGGCGCCGGATT+CGG | + | chr1.2:28410421-28410440 | MS.gene53552:CDS | 65.0% |
| ! | GCTGTGTCGTTGCTGGGAGC+TGG | + | chr1.2:28411463-28411482 | MS.gene53552:CDS | 65.0% |
| GAAGCCTCCGAATCCGGCGC+CGG | - | chr1.2:28410431-28410450 | None:intergenic | 70.0% | |
| ! | GACTCCGGCGCCGGATTCGG+AGG | + | chr1.2:28410424-28410443 | MS.gene53552:CDS | 75.0% |
| ! | GGCGGGGAAGACTCCGGCGC+CGG | + | chr1.2:28410415-28410434 | MS.gene53552:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 28410113 | 28412512 | 28410113 | ID=MS.gene53552 |
| chr1.2 | mRNA | 28410113 | 28412512 | 28410113 | ID=MS.gene53552.t1;Parent=MS.gene53552 |
| chr1.2 | exon | 28410113 | 28412512 | 28410113 | ID=MS.gene53552.t1.exon1;Parent=MS.gene53552.t1 |
| chr1.2 | CDS | 28410113 | 28412512 | 28410113 | ID=cds.MS.gene53552.t1;Parent=MS.gene53552.t1 |
| Gene Sequence |
| Protein sequence |
