AlfalfaGEDB | MS.gene53924

M. sativa cultivar XinJiangDaYe / MS.gene53924

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF07719.20 PF13041.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53924.t1	XP_024627631.1	89.2	408	44	0	1	408	85	492	7.00E-206	726.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53924.t1	Q9SKU6	39.3	377	222	3	1	376	96	466	1.1e-79	298.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53924.t1	A0A072TQ66	89.2	408	44	0	1	408	85	492	5.0e-206	726.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene53924	0.805727	1.16E-49	-1.69E-46
MS.gene049404	MS.gene53924	0.808055	3.74E-50	-1.69E-46
MS.gene049669	MS.gene53924	0.806118	9.61E-50	-1.69E-46
MS.gene050026	MS.gene53924	0.823644	1.24E-53	-1.69E-46
MS.gene050355	MS.gene53924	0.801716	7.90E-49	-1.69E-46
MS.gene050442	MS.gene53924	0.804144	2.49E-49	-1.69E-46
MS.gene050750	MS.gene53924	0.818355	2.05E-52	-1.69E-46
MS.gene050953	MS.gene53924	0.816786	4.62E-52	-1.69E-46
MS.gene051181	MS.gene53924	0.806113	9.63E-50	-1.69E-46
MS.gene051198	MS.gene53924	0.805217	1.49E-49	-1.69E-46
MS.gene051265	MS.gene53924	0.811807	5.82E-51	-1.69E-46
MS.gene051594	MS.gene53924	0.802792	4.74E-49	-1.69E-46
MS.gene051744	MS.gene53924	0.810871	9.29E-51	-1.69E-46
MS.gene052208	MS.gene53924	0.812247	4.67E-51	-1.69E-46
MS.gene052333	MS.gene53924	0.804334	2.27E-49	-1.69E-46
MS.gene052582	MS.gene53924	0.805998	1.02E-49	-1.69E-46
MS.gene052584	MS.gene53924	0.805075	1.59E-49	-1.69E-46
MS.gene052866	MS.gene53924	0.902094	1.38E-78	-1.69E-46
MS.gene052867	MS.gene53924	0.985046	2.31E-162	-1.69E-46
MS.gene053166	MS.gene53924	0.827448	1.56E-54	-1.69E-46
MS.gene053226	MS.gene53924	0.813539	2.43E-51	-1.69E-46
MS.gene053953	MS.gene53924	0.807009	6.23E-50	-1.69E-46
MS.gene053974	MS.gene53924	0.824475	7.91E-54	-1.69E-46
MS.gene05414	MS.gene53924	0.811342	7.34E-51	-1.69E-46
MS.gene05415	MS.gene53924	0.822194	2.70E-53	-1.69E-46
MS.gene054236	MS.gene53924	0.822641	2.12E-53	-1.69E-46
MS.gene054291	MS.gene53924	-0.813953	1.97E-51	-1.69E-46
MS.gene054405	MS.gene53924	0.813957	1.97E-51	-1.69E-46
MS.gene054559	MS.gene53924	0.828838	7.19E-55	-1.69E-46
MS.gene054651	MS.gene53924	0.805473	1.31E-49	-1.69E-46
MS.gene054775	MS.gene53924	0.809748	1.62E-50	-1.69E-46
MS.gene055228	MS.gene53924	0.812608	3.89E-51	-1.69E-46
MS.gene055356	MS.gene53924	0.808718	2.70E-50	-1.69E-46
MS.gene055589	MS.gene53924	0.829893	3.99E-55	-1.69E-46
MS.gene055778	MS.gene53924	0.807897	4.04E-50	-1.69E-46
MS.gene055818	MS.gene53924	0.814512	1.48E-51	-1.69E-46
MS.gene056162	MS.gene53924	0.809669	1.69E-50	-1.69E-46
MS.gene056173	MS.gene53924	0.801371	9.29E-49	-1.69E-46
MS.gene056366	MS.gene53924	0.810615	1.06E-50	-1.69E-46
MS.gene056498	MS.gene53924	0.803121	4.05E-49	-1.69E-46
MS.gene056506	MS.gene53924	0.804423	2.18E-49	-1.69E-46
MS.gene057027	MS.gene53924	0.820723	5.90E-53	-1.69E-46
MS.gene057060	MS.gene53924	0.819317	1.24E-52	-1.69E-46
MS.gene057414	MS.gene53924	0.808059	3.73E-50	-1.69E-46
MS.gene057444	MS.gene53924	0.810754	9.85E-51	-1.69E-46
MS.gene058625	MS.gene53924	0.81475	1.31E-51	-1.69E-46
MS.gene058979	MS.gene53924	0.831545	1.57E-55	-1.69E-46
MS.gene059382	MS.gene53924	0.818626	1.78E-52	-1.69E-46
MS.gene059584	MS.gene53924	0.809109	2.23E-50	-1.69E-46
MS.gene059625	MS.gene53924	0.816232	6.15E-52	-1.69E-46
MS.gene060011	MS.gene53924	0.83629	1.02E-56	-1.69E-46
MS.gene060137	MS.gene53924	-0.819328	1.23E-52	-1.69E-46
MS.gene060521	MS.gene53924	0.801336	9.45E-49	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53924.t1	MTR_8g465890	96.324	408	15	0	1	408	85	492	0.0	812
MS.gene53924.t1	MTR_2g047855	86.098	410	51	3	1	408	89	494	0.0	712
MS.gene53924.t1	MTR_2g090290	51.459	377	173	2	12	381	101	474	2.75e-130	384
MS.gene53924.t1	MTR_8g059115	30.769	403	268	7	1	398	1	397	8.16e-60	200
MS.gene53924.t1	MTR_8g069570	32.958	355	229	5	4	353	83	433	4.19e-58	197
MS.gene53924.t1	MTR_8g007375	31.285	358	239	5	7	361	8	361	4.58e-52	179
MS.gene53924.t1	MTR_2g013450	34.277	318	203	4	15	330	100	413	8.65e-51	178
MS.gene53924.t1	MTR_1g072300	31.148	366	241	6	1	361	95	454	4.03e-48	171
MS.gene53924.t1	MTR_3g099753	29.570	372	239	8	1	360	95	455	2.01e-45	164
MS.gene53924.t1	MTR_3g099753	29.570	372	239	8	1	360	119	479	2.27e-45	164
MS.gene53924.t1	MTR_1g086820	30.747	348	228	6	5	347	92	431	1.60e-44	161
MS.gene53924.t1	MTR_1g022400	29.643	280	189	6	1	276	112	387	1.04e-26	110
MS.gene53924.t1	MTR_7g089770	25.201	373	251	12	1	364	214	567	1.39e-23	103
MS.gene53924.t1	MTR_1g050750	23.784	370	260	9	1	364	148	501	1.31e-17	85.1
MS.gene53924.t1	MTR_1g048080	24.841	314	218	8	46	353	340	641	8.62e-15	77.0
MS.gene53924.t1	MTR_8g031510	28.906	128	90	1	235	361	1	128	1.15e-12	66.2
MS.gene53924.t1	MTR_8g098755	22.713	317	229	8	47	354	240	549	3.34e-12	68.6
MS.gene53924.t1	MTR_8g031520	30.303	132	84	3	11	139	173	299	4.28e-12	67.0
MS.gene53924.t1	MTR_7g091410	23.263	331	211	9	25	316	130	456	9.38e-12	67.0
MS.gene53924.t1	MTR_5g077220	22.222	270	201	8	46	312	466	729	1.04e-11	67.4
MS.gene53924.t1	MTR_7g091410	23.263	331	211	9	25	316	171	497	1.07e-11	67.0
MS.gene53924.t1	MTR_7g091410	22.590	332	214	8	24	316	235	562	1.18e-11	67.0
MS.gene53924.t1	MTR_7g091410	23.193	332	212	9	24	316	374	701	1.21e-11	67.0
MS.gene53924.t1	MTR_2g096880	20.882	340	259	5	13	347	113	447	1.51e-11	66.2
MS.gene53924.t1	MTR_7g066990	20.552	326	245	8	18	338	194	510	3.74e-11	65.5
MS.gene53924.t1	MTR_3g033040	24.280	243	176	5	36	275	195	432	8.37e-11	63.9
MS.gene53924.t1	MTR_3g033040	24.280	243	176	5	36	275	195	432	9.06e-11	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53924.t1	AT2G20710	39.835	364	215	2	1	363	1	361	1.07e-97	297
MS.gene53924.t1	AT2G20710	39.835	364	215	2	1	363	96	456	2.87e-96	296
MS.gene53924.t1	AT1G60770	34.637	358	222	7	4	353	83	436	5.33e-63	210
MS.gene53924.t1	AT1G02150	31.877	389	250	8	7	384	132	516	7.73e-58	197
MS.gene53924.t1	AT5G27460	32.162	370	234	7	1	360	96	458	1.30e-52	183
MS.gene53924.t1	AT4G21705	32.704	318	206	5	15	328	97	410	1.10e-49	175
MS.gene53924.t1	AT4G01990	31.507	365	242	5	5	366	101	460	8.02e-47	167
MS.gene53924.t1	AT1G28020	34.323	303	181	5	1	294	94	387	3.15e-43	158
MS.gene53924.t1	AT4G02820	27.151	372	264	5	1	371	119	484	1.14e-40	151
MS.gene53924.t1	AT1G02370	31.119	286	190	5	4	286	131	412	3.55e-38	145
MS.gene53924.t1	AT5G09450	30.682	264	178	4	12	272	124	385	7.22e-25	105
MS.gene53924.t1	AT3G11380	28.571	287	163	7	4	284	103	353	1.31e-24	106
MS.gene53924.t1	AT3G11380	34.752	141	86	4	1	138	404	541	6.22e-12	67.8
MS.gene53924.t1	AT1G80270	26.359	368	246	9	5	364	190	540	3.93e-23	102
MS.gene53924.t1	AT1G80270	26.359	368	246	9	5	364	190	540	3.93e-23	102
MS.gene53924.t1	AT1G80270	26.359	368	246	9	5	364	190	540	3.93e-23	102
MS.gene53924.t1	AT1G80270	26.359	368	246	9	5	364	190	540	3.93e-23	102
MS.gene53924.t1	AT1G80270	26.359	368	246	9	5	364	190	540	3.93e-23	102
MS.gene53924.t1	AT2G20720	28.826	281	167	11	88	353	1	263	1.12e-22	97.8
MS.gene53924.t1	AT5G04810	25.962	312	219	7	45	353	345	647	1.67e-18	88.6
MS.gene53924.t1	AT5G04810	25.962	312	219	7	45	353	345	647	1.75e-18	88.2
MS.gene53924.t1	AT1G28000	28.761	226	146	6	9	225	99	318	5.92e-18	85.5
MS.gene53924.t1	AT1G15480	21.972	355	262	6	13	364	196	538	3.08e-15	78.2
MS.gene53924.t1	AT2G01740	20.536	336	259	5	18	350	63	393	5.86e-14	73.9
MS.gene53924.t1	AT1G62590	22.222	333	233	8	43	365	259	575	7.12e-12	67.8
MS.gene53924.t1	AT1G62590	22.222	333	233	8	43	365	259	575	7.12e-12	67.8
MS.gene53924.t1	AT1G63330	22.253	364	246	10	12	365	164	500	2.33e-11	65.9
MS.gene53924.t1	AT1G63330	22.253	364	246	10	12	365	164	500	2.33e-11	65.9
MS.gene53924.t1	AT1G63330	22.253	364	246	10	12	365	164	500	2.33e-11	65.9
MS.gene53924.t1	AT5G61990	21.994	341	226	7	70	374	440	776	3.01e-11	65.9
MS.gene53924.t1	AT1G12300	22.507	351	239	10	47	388	276	602	5.06e-11	65.1
MS.gene53924.t1	AT3G15590	23.018	391	282	9	6	390	204	581	9.24e-11	64.3
MS.gene53924.t1	AT3G15590	23.018	391	282	9	6	390	204	581	9.24e-11	64.3

Find 79 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TACCAAGTCTTGTTCATTAT+TGG	0.158338	4.2:-60184952	None:intergenic
AATATCTGCAAAAGCTTAAA+TGG	0.198675	4.2:+60185362	MS.gene53924:CDS
ATACATGCAGCAAAAGTAAA+TGG	0.236659	4.2:-60185716	None:intergenic
AGAAACCTTCATTTATTATC+AGG	0.259070	4.2:+60184741	MS.gene53924:CDS
GTAAATTAGATGGAAGAATA+TGG	0.272444	4.2:+60185591	MS.gene53924:CDS
AGGATGATGTGTATAGAATT+TGG	0.279819	4.2:+60185339	MS.gene53924:CDS
GTATGCTGCTATTGGGAAAA+AGG	0.284030	4.2:+60185319	MS.gene53924:CDS
TCAAAAGATTTCAAGGTCTA+TGG	0.286344	4.2:+60184849	MS.gene53924:CDS
CTATCAACGCCTTGTCAAAT+TGG	0.291657	4.2:-60185226	None:intergenic
CTAACTAAGTATGCTGCTAT+TGG	0.295443	4.2:+60185311	MS.gene53924:CDS
AAAAGAGATGGTAAATTAGA+TGG	0.307752	4.2:+60185581	MS.gene53924:CDS
TACAATGAAGAAAGCAATAT+TGG	0.324291	4.2:+60185667	MS.gene53924:CDS
AGATGAGATGGAGAAGTTAT+TGG	0.339068	4.2:+60185124	MS.gene53924:CDS
ACACACTTCAAAAGATTTCA+AGG	0.352580	4.2:+60184842	MS.gene53924:CDS
ATTCTAGAGGAATGGGAATC+TGG	0.360043	4.2:+60185458	MS.gene53924:CDS
CATGAAAGAAAAGAGAGATT+TGG	0.367770	4.2:+60185745	MS.gene53924:CDS
GCGATACGTCTCACCTTGAT+AGG	0.373282	4.2:+60184771	MS.gene53924:CDS
GAGTTGGCATTGGAGATTCT+TGG	0.376634	4.2:+60185767	MS.gene53924:CDS
CTATTATAAGTATAACGATA+TGG	0.383667	4.2:+60185631	MS.gene53924:CDS
TTCTGTTAAAGCTCTATTCT+CGG	0.395487	4.2:+60184988	MS.gene53924:CDS
GGAGAAGTTATTGGCGAAGA+TGG	0.400331	4.2:+60185133	MS.gene53924:CDS
GAGAGATTTGGAGTTGGCAT+TGG	0.400920	4.2:+60185757	MS.gene53924:CDS
AAATCTGAACAGTTGATTAG+AGG	0.401555	4.2:+60185257	MS.gene53924:CDS
TCGAATCTAAATGACATTGA+TGG	0.409997	4.2:+60185425	MS.gene53924:CDS
ATCACAACATAACTTTGAAC+TGG	0.418385	4.2:+60185162	MS.gene53924:CDS
AGTTGGCATTGGAGATTCTT+GGG	0.423822	4.2:+60185768	MS.gene53924:CDS
GTTAGTGCTTATTGTAAGAA+TGG	0.429380	4.2:+60185518	MS.gene53924:CDS
TAAGCACTAACCATCACATT+TGG	0.434733	4.2:-60185506	None:intergenic
TGGAAGAATATGGGATCGTT+TGG	0.441147	4.2:+60185601	MS.gene53924:CDS
TAACTAAGTATGCTGCTATT+GGG	0.452411	4.2:+60185312	MS.gene53924:CDS
CTTGGGACGTGTAGGGAACT+AGG	0.453871	4.2:+60185785	MS.gene53924:CDS
TAAGAATGGTATGTTGGAAA+AGG	0.454505	4.2:+60185532	MS.gene53924:CDS
CTGAGACGATTCTAGAGGAA+TGG	0.485090	4.2:+60185450	MS.gene53924:CDS
ACGTATTCTGCTGTTGCTGA+TGG	0.485242	4.2:+60185188	MS.gene53924:CDS
TGACATTAACATAGAAATGT+AGG	0.489387	4.2:-60185399	None:intergenic
ACAGTTCCACACTTACTAGT+TGG	0.490146	4.2:+60185072	MS.gene53924:CDS
AGAAAAGAGAGATTTGGAGT+TGG	0.495030	4.2:+60185751	MS.gene53924:CDS
ACATAGAAATGTAGGTTGAA+TGG	0.502220	4.2:-60185391	None:intergenic
TACATGCAGCAAAAGTAAAT+GGG	0.502567	4.2:-60185715	None:intergenic
TGAGACGATTCTAGAGGAAT+GGG	0.505779	4.2:+60185451	MS.gene53924:CDS
TAAATTAGATGGAAGAATAT+GGG	0.509804	4.2:+60185592	MS.gene53924:CDS
TGGAGATTCTTGGGACGTGT+AGG	0.512268	4.2:+60185777	MS.gene53924:CDS
GAAAAGGCAGAAGCATATGT+TGG	0.512700	4.2:+60185548	MS.gene53924:CDS
CACAATACAACTCTGTTGAG+AGG	0.513284	4.2:+60184892	MS.gene53924:CDS
TTCCAATAATGAACAAGACT+TGG	0.528671	4.2:+60184950	MS.gene53924:CDS
ACCGCGGACTTTACCTATCA+AGG	0.528914	4.2:-60184784	None:intergenic
TACTAGTAACATAGATGAGA+TGG	0.529015	4.2:+60185112	MS.gene53924:CDS
TTAAAGCTCTATTCTCGGAC+AGG	0.530539	4.2:+60184993	MS.gene53924:CDS
GGAGATTCTTGGGACGTGTA+GGG	0.531898	4.2:+60185778	MS.gene53924:CDS
GACAGGCCAACATGAGAAGT+TGG	0.534670	4.2:+60185010	MS.gene53924:CDS
GCTGATGGATATATTAAAGT+TGG	0.546261	4.2:+60185203	MS.gene53924:CDS
GCAGCAAAAGTAAATGGGTA+AGG	0.548795	4.2:-60185710	None:intergenic
ATTGATGAAGTGCCGGTGGA+TGG	0.549081	4.2:+60185911	MS.gene53924:CDS
TAGAAATGTAGGTTGAATGG+TGG	0.556781	4.2:-60185388	None:intergenic
TATCTCCTGATAATAAATGA+AGG	0.557018	4.2:-60184746	None:intergenic
TATTGGCAAGTCCACAAGGA+TGG	0.562473	4.2:+60185684	MS.gene53924:CDS
AAAAGGCAGAAGCATATGTT+GGG	0.563161	4.2:+60185549	MS.gene53924:CDS
ATATGGGATCGTTTGGCGCA+TGG	0.569764	4.2:+60185608	MS.gene53924:CDS
AATGCATTGAAACTATTGAA+AGG	0.583348	4.2:+60185872	MS.gene53924:CDS
TAAAGTTGGCCAATTTGACA+AGG	0.588172	4.2:+60185217	MS.gene53924:CDS
GAGCAACCAACTTCTCATGT+TGG	0.593793	4.2:-60185016	None:intergenic
TTATTGTAAGAATGGTATGT+TGG	0.595840	4.2:+60185526	MS.gene53924:CDS
GGGTAAGGTTTCCATCCTTG+TGG	0.602793	4.2:-60185695	None:intergenic
AGAAATGTAGGTTGAATGGT+GGG	0.604581	4.2:-60185387	None:intergenic
GCAATATTGGCAAGTCCACA+AGG	0.607044	4.2:+60185680	MS.gene53924:CDS
ATAATTTATCAACTCATCAC+AGG	0.610232	4.2:-60185825	None:intergenic
TCTGAGGATTGATGAAGTGC+CGG	0.623064	4.2:+60185904	MS.gene53924:CDS
ACAATACAACTCTGTTGAGA+GGG	0.624448	4.2:+60184893	MS.gene53924:CDS
TGAAAGGAGATTATCATCTG+AGG	0.625770	4.2:+60185888	MS.gene53924:CDS
TGTTGCTCCTCTCCATCCAC+CGG	0.627694	4.2:-60185923	None:intergenic
TGTCAGAATTCCAAATGTGA+TGG	0.654148	4.2:+60185496	MS.gene53924:CDS
ATTGAGCCAACTAGTAAGTG+TGG	0.661729	4.2:-60185078	None:intergenic
AGGCAGAAGCATATGTTGGG+AGG	0.666399	4.2:+60185552	MS.gene53924:CDS
GAGGATTGATGAAGTGCCGG+TGG	0.670912	4.2:+60185907	MS.gene53924:CDS
TGGAGCTGAGACGATTCTAG+AGG	0.681337	4.2:+60185445	MS.gene53924:CDS
TGAAGTGCCGGTGGATGGAG+AGG	0.684802	4.2:+60185916	MS.gene53924:CDS
GAGTTGATAAATTATGTGCA+AGG	0.689053	4.2:+60185833	MS.gene53924:CDS
TCTCTGCTTGATCTAGACCG+CGG	0.698359	4.2:-60184800	None:intergenic
ACCTTGATAGGTAAAGTCCG+CGG	0.730817	4.2:+60184783	MS.gene53924:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	CTATTATAAGTATAACGATA+TGG	+	chr4.2:60185631-60185650	MS.gene53924:CDS	20.0%
!!	TAAATTAGATGGAAGAATAT+GGG	+	chr4.2:60185592-60185611	MS.gene53924:CDS	20.0%
!	AAAAGAGATGGTAAATTAGA+TGG	+	chr4.2:60185581-60185600	MS.gene53924:CDS	25.0%
!	AATATCTGCAAAAGCTTAAA+TGG	+	chr4.2:60185362-60185381	MS.gene53924:CDS	25.0%
!	AATGCATTGAAACTATTGAA+AGG	+	chr4.2:60185872-60185891	MS.gene53924:CDS	25.0%
!	AGAAACCTTCATTTATTATC+AGG	+	chr4.2:60184741-60184760	MS.gene53924:CDS	25.0%
!	ATAATTTATCAACTCATCAC+AGG	-	chr4.2:60185828-60185847	None:intergenic	25.0%
!	GTAAATTAGATGGAAGAATA+TGG	+	chr4.2:60185591-60185610	MS.gene53924:CDS	25.0%
!	TACAATGAAGAAAGCAATAT+TGG	+	chr4.2:60185667-60185686	MS.gene53924:CDS	25.0%
!	TATCTCCTGATAATAAATGA+AGG	-	chr4.2:60184749-60184768	None:intergenic	25.0%
!	TGACATTAACATAGAAATGT+AGG	-	chr4.2:60185402-60185421	None:intergenic	25.0%
!	TTATTGTAAGAATGGTATGT+TGG	+	chr4.2:60185526-60185545	MS.gene53924:CDS	25.0%
	AAATCTGAACAGTTGATTAG+AGG	+	chr4.2:60185257-60185276	MS.gene53924:CDS	30.0%
	ACACACTTCAAAAGATTTCA+AGG	+	chr4.2:60184842-60184861	MS.gene53924:CDS	30.0%
	AGGATGATGTGTATAGAATT+TGG	+	chr4.2:60185339-60185358	MS.gene53924:CDS	30.0%
	ATACATGCAGCAAAAGTAAA+TGG	-	chr4.2:60185719-60185738	None:intergenic	30.0%
	ATCACAACATAACTTTGAAC+TGG	+	chr4.2:60185162-60185181	MS.gene53924:CDS	30.0%
	CATGAAAGAAAAGAGAGATT+TGG	+	chr4.2:60185745-60185764	MS.gene53924:CDS	30.0%
	GTTAGTGCTTATTGTAAGAA+TGG	+	chr4.2:60185518-60185537	MS.gene53924:CDS	30.0%
	TAACTAAGTATGCTGCTATT+GGG	+	chr4.2:60185312-60185331	MS.gene53924:CDS	30.0%
	TAAGAATGGTATGTTGGAAA+AGG	+	chr4.2:60185532-60185551	MS.gene53924:CDS	30.0%
	TACATGCAGCAAAAGTAAAT+GGG	-	chr4.2:60185718-60185737	None:intergenic	30.0%
	TACTAGTAACATAGATGAGA+TGG	+	chr4.2:60185112-60185131	MS.gene53924:CDS	30.0%
	TCAAAAGATTTCAAGGTCTA+TGG	+	chr4.2:60184849-60184868	MS.gene53924:CDS	30.0%
	TCGAATCTAAATGACATTGA+TGG	+	chr4.2:60185425-60185444	MS.gene53924:CDS	30.0%
	TTCCAATAATGAACAAGACT+TGG	+	chr4.2:60184950-60184969	MS.gene53924:CDS	30.0%
	TTCTGTTAAAGCTCTATTCT+CGG	+	chr4.2:60184988-60185007	MS.gene53924:CDS	30.0%
!	ACATAGAAATGTAGGTTGAA+TGG	-	chr4.2:60185394-60185413	None:intergenic	30.0%
!	GCTGATGGATATATTAAAGT+TGG	+	chr4.2:60185203-60185222	MS.gene53924:CDS	30.0%
!!	GAGTTGATAAATTATGTGCA+AGG	+	chr4.2:60185833-60185852	MS.gene53924:CDS	30.0%
!!	TACCAAGTCTTGTTCATTAT+TGG	-	chr4.2:60184955-60184974	None:intergenic	30.0%
!!!	TTGAAATCTTTTGAAGTGTG+TGG	-	chr4.2:60184843-60184862	None:intergenic	30.0%
	ACAATACAACTCTGTTGAGA+GGG	+	chr4.2:60184893-60184912	MS.gene53924:CDS	35.0%
	AGATGAGATGGAGAAGTTAT+TGG	+	chr4.2:60185124-60185143	MS.gene53924:CDS	35.0%
	CTAACTAAGTATGCTGCTAT+TGG	+	chr4.2:60185311-60185330	MS.gene53924:CDS	35.0%
	TAAAGTTGGCCAATTTGACA+AGG	+	chr4.2:60185217-60185236	MS.gene53924:CDS	35.0%
	TAAGCACTAACCATCACATT+TGG	-	chr4.2:60185509-60185528	None:intergenic	35.0%
	TGAAAGGAGATTATCATCTG+AGG	+	chr4.2:60185888-60185907	MS.gene53924:CDS	35.0%
	TGTCAGAATTCCAAATGTGA+TGG	+	chr4.2:60185496-60185515	MS.gene53924:CDS	35.0%
!	AAAAGGCAGAAGCATATGTT+GGG	+	chr4.2:60185549-60185568	MS.gene53924:CDS	35.0%
!	AGAAAAGAGAGATTTGGAGT+TGG	+	chr4.2:60185751-60185770	MS.gene53924:CDS	35.0%
!	AGAAATGTAGGTTGAATGGT+GGG	-	chr4.2:60185390-60185409	None:intergenic	35.0%
!	TAGAAATGTAGGTTGAATGG+TGG	-	chr4.2:60185391-60185410	None:intergenic	35.0%
	ACAGTTCCACACTTACTAGT+TGG	+	chr4.2:60185072-60185091	MS.gene53924:CDS	40.0%
	ATTGAGCCAACTAGTAAGTG+TGG	-	chr4.2:60185081-60185100	None:intergenic	40.0%
	CACAATACAACTCTGTTGAG+AGG	+	chr4.2:60184892-60184911	MS.gene53924:CDS	40.0%
	CTATCAACGCCTTGTCAAAT+TGG	-	chr4.2:60185229-60185248	None:intergenic	40.0%
	GCAGCAAAAGTAAATGGGTA+AGG	-	chr4.2:60185713-60185732	None:intergenic	40.0%
	GTATGCTGCTATTGGGAAAA+AGG	+	chr4.2:60185319-60185338	MS.gene53924:CDS	40.0%
	TGGAAGAATATGGGATCGTT+TGG	+	chr4.2:60185601-60185620	MS.gene53924:CDS	40.0%
	TTAAAGCTCTATTCTCGGAC+AGG	+	chr4.2:60184993-60185012	MS.gene53924:CDS	40.0%
!	AGTTGGCATTGGAGATTCTT+GGG	+	chr4.2:60185768-60185787	MS.gene53924:CDS	40.0%
!	ATTCTAGAGGAATGGGAATC+TGG	+	chr4.2:60185458-60185477	MS.gene53924:CDS	40.0%
!	GAAAAGGCAGAAGCATATGT+TGG	+	chr4.2:60185548-60185567	MS.gene53924:CDS	40.0%
!	TGAGACGATTCTAGAGGAAT+GGG	+	chr4.2:60185451-60185470	MS.gene53924:CDS	40.0%
!!	GGGAGGCTTTTAAAAAGAGA+TGG	+	chr4.2:60185569-60185588	MS.gene53924:CDS	40.0%
	ACCTTGATAGGTAAAGTCCG+CGG	+	chr4.2:60184783-60184802	MS.gene53924:CDS	45.0%
	ACGTATTCTGCTGTTGCTGA+TGG	+	chr4.2:60185188-60185207	MS.gene53924:CDS	45.0%
	GAGCAACCAACTTCTCATGT+TGG	-	chr4.2:60185019-60185038	None:intergenic	45.0%
	GCAATATTGGCAAGTCCACA+AGG	+	chr4.2:60185680-60185699	MS.gene53924:CDS	45.0%
	GGAGAAGTTATTGGCGAAGA+TGG	+	chr4.2:60185133-60185152	MS.gene53924:CDS	45.0%
	TATTGGCAAGTCCACAAGGA+TGG	+	chr4.2:60185684-60185703	MS.gene53924:CDS	45.0%
	TCTGAGGATTGATGAAGTGC+CGG	+	chr4.2:60185904-60185923	MS.gene53924:CDS	45.0%
!	CTGAGACGATTCTAGAGGAA+TGG	+	chr4.2:60185450-60185469	MS.gene53924:CDS	45.0%
!	GAGAGATTTGGAGTTGGCAT+TGG	+	chr4.2:60185757-60185776	MS.gene53924:CDS	45.0%
!	GAGTTGGCATTGGAGATTCT+TGG	+	chr4.2:60185767-60185786	MS.gene53924:CDS	45.0%
	ACCGCGGACTTTACCTATCA+AGG	-	chr4.2:60184787-60184806	None:intergenic	50.0%
	ATATGGGATCGTTTGGCGCA+TGG	+	chr4.2:60185608-60185627	MS.gene53924:CDS	50.0%
	GACAGGCCAACATGAGAAGT+TGG	+	chr4.2:60185010-60185029	MS.gene53924:CDS	50.0%
	GCGATACGTCTCACCTTGAT+AGG	+	chr4.2:60184771-60184790	MS.gene53924:CDS	50.0%
	GGAGATTCTTGGGACGTGTA+GGG	+	chr4.2:60185778-60185797	MS.gene53924:CDS	50.0%
	GGGTAAGGTTTCCATCCTTG+TGG	-	chr4.2:60185698-60185717	None:intergenic	50.0%
	TCTCTGCTTGATCTAGACCG+CGG	-	chr4.2:60184803-60184822	None:intergenic	50.0%
	TGGAGATTCTTGGGACGTGT+AGG	+	chr4.2:60185777-60185796	MS.gene53924:CDS	50.0%
	TGGAGCTGAGACGATTCTAG+AGG	+	chr4.2:60185445-60185464	MS.gene53924:CDS	50.0%
!	AGGCAGAAGCATATGTTGGG+AGG	+	chr4.2:60185552-60185571	MS.gene53924:CDS	50.0%
!!	ATTGATGAAGTGCCGGTGGA+TGG	+	chr4.2:60185911-60185930	MS.gene53924:CDS	50.0%
	CTTGGGACGTGTAGGGAACT+AGG	+	chr4.2:60185785-60185804	MS.gene53924:CDS	55.0%
	TGTTGCTCCTCTCCATCCAC+CGG	-	chr4.2:60185926-60185945	None:intergenic	55.0%
!!	GAGGATTGATGAAGTGCCGG+TGG	+	chr4.2:60185907-60185926	MS.gene53924:CDS	55.0%
!!	TGAAGTGCCGGTGGATGGAG+AGG	+	chr4.2:60185916-60185935	MS.gene53924:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	60184729	60185955	60184729	ID=MS.gene53924
chr4.2	mRNA	60184729	60185955	60184729	ID=MS.gene53924.t1;Parent=MS.gene53924
chr4.2	exon	60184729	60185955	60184729	ID=MS.gene53924.t1.exon1;Parent=MS.gene53924.t1
chr4.2	CDS	60184729	60185955	60184729	ID=cds.MS.gene53924.t1;Parent=MS.gene53924.t1

Gene Sequence

>MS.gene53924

ATGAGCAATGAAAGAAACCTTCATTTATTATCAGGAGATATTGCGATACGTCTCACCTTGATAGGTAAAGTCCGCGGTCTAGATCAAGCAGAGAAATATTTTAACAGTGTTCCACACACTTCAAAAGATTTCAAGGTCTATGGTGCTCTGTTGAATTGCTATGCACAATACAACTCTGTTGAGAGGGCAGAACTTATCATGAAGACATTAAAAGAGTCTTCTTCCAATAATGAACAAGACTTGGTAGTGAGTTATCATGTTCTGTTAAAGCTCTATTCTCGGACAGGCCAACATGAGAAGTTGGTTGCTCTGATGAAAGAAATGAAAGAGAAGAAAATGTGCAACAGTTCCACACTTACTAGTTGGCTCAATGCTTATGCGATTACTAGTAACATAGATGAGATGGAGAAGTTATTGGCGAAGATGGAAGTTGATCACAACATAACTTTGAACTGGCTCACGTATTCTGCTGTTGCTGATGGATATATTAAAGTTGGCCAATTTGACAAGGCGTTGATAGTGTTGAAAAAATCTGAACAGTTGATTAGAGGAAAGTCGAAGAGAGCTGTGTATCAATCTCTTCTAACTAAGTATGCTGCTATTGGGAAAAAGGATGATGTGTATAGAATTTGGAATATCTGCAAAAGCTTAAATGGTTCCCACCATTCAACCTACATTTCTATGTTAATGTCATTATCGAATCTAAATGACATTGATGGAGCTGAGACGATTCTAGAGGAATGGGAATCTGGAAATACATGCTTTGATGTCAGAATTCCAAATGTGATGGTTAGTGCTTATTGTAAGAATGGTATGTTGGAAAAGGCAGAAGCATATGTTGGGAGGCTTTTAAAAAGAGATGGTAAATTAGATGGAAGAATATGGGATCGTTTGGCGCATGGCTATTATAAGTATAACGATATGGATAAAGCAGTTCATACAATGAAGAAAGCAATATTGGCAAGTCCACAAGGATGGAAACCTTACCCATTTACTTTTGCTGCATGTATTGATCACATGAAAGAAAAGAGAGATTTGGAGTTGGCATTGGAGATTCTTGGGACGTGTAGGGAACTAGGTCATTTCTCTCAAGCTACCTGTGATGAGTTGATAAATTATGTGCAAGGTGAAATCTCAGAAACAAATGCATTGAAACTATTGAAAGGAGATTATCATCTGAGGATTGATGAAGTGCCGGTGGATGGAGAGGAGCAACATGAAATGTAG

Protein sequence

>MS.gene53924.t1

MSNERNLHLLSGDIAIRLTLIGKVRGLDQAEKYFNSVPHTSKDFKVYGALLNCYAQYNSVERAELIMKTLKESSSNNEQDLVVSYHVLLKLYSRTGQHEKLVALMKEMKEKKMCNSSTLTSWLNAYAITSNIDEMEKLLAKMEVDHNITLNWLTYSAVADGYIKVGQFDKALIVLKKSEQLIRGKSKRAVYQSLLTKYAAIGKKDDVYRIWNICKSLNGSHHSTYISMLMSLSNLNDIDGAETILEEWESGNTCFDVRIPNVMVSAYCKNGMLEKAEAYVGRLLKRDGKLDGRIWDRLAHGYYKYNDMDKAVHTMKKAILASPQGWKPYPFTFAACIDHMKEKRDLELALEILGTCRELGHFSQATCDELINYVQGEISETNALKLLKGDYHLRIDEVPVDGEEQHEM