AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene58084


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58084.t1 MTR_4g130730 96.111 180 7 0 1 180 1 180 9.67e-116 327
MS.gene58084.t1 MTR_0380s0040 70.619 194 49 4 1 192 1 188 8.67e-90 261
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58084.t1 AT4G30620 78.472 144 25 4 51 192 41 180 7.03e-74 221
MS.gene58084.t1 AT2G24020 76.761 142 27 3 54 192 42 180 3.81e-72 216
MS.gene58084.t1 AT2G24020 76.761 142 27 3 54 192 44 182 3.98e-72 216

Find 41 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACTCATCCTTTCCTTCA+TGG 0.264347 8.4:-3546969 None:intergenic
AGTGATCTTGCTCAGAGTTT+AGG 0.315621 8.4:+3546986 MS.gene58084:CDS
TAATGAAAGTGGTGATAATA+AGG 0.335244 8.4:+3544058 MS.gene58084:CDS
ACCGAGGCTGCTATGGAATT+AGG 0.336676 8.4:+3546407 MS.gene58084:CDS
TTACATAGAGATGATGATAA+AGG 0.366088 8.4:-3543375 None:intergenic
GTTGCAGAAACTTTCACTTT+TGG 0.369999 8.4:+3546813 MS.gene58084:intron
CTATGCAGAGCCGAGTTTGA+TGG 0.393847 8.4:+3546030 MS.gene58084:intron
TTCAGAGTCCACGCCCTCTT+CGG 0.417036 8.4:+3544023 MS.gene58084:CDS
ACAAATTACCGAGGCTGCTA+TGG 0.426700 8.4:+3546400 MS.gene58084:CDS
TACATAGAGATGATGATAAA+GGG 0.429444 8.4:-3543374 None:intergenic
GTATCCGATTTGATTCTACT+TGG 0.436674 8.4:-3545893 None:intergenic
CTGTGAGGGTGAGTTAATAA+AGG 0.456581 8.4:+3546056 MS.gene58084:CDS
GAGATGATGATAAAGGGTTC+CGG 0.466489 8.4:-3543368 None:intergenic
TTTGGTCACAGAGGCTTACA+AGG 0.475320 8.4:+3546831 MS.gene58084:CDS
CAACCACTCAATGCTCAAAC+CGG 0.484679 8.4:+3543349 MS.gene58084:CDS
TCGGTAATTTGTGTTCGTAC+AGG 0.488513 8.4:-3546389 None:intergenic
TGATTATAGGGCGGAATGCT+CGG 0.498257 8.4:+3545813 MS.gene58084:intron
TTAGGAATGCCACCAGGTCT+CGG 0.506708 8.4:+3547004 MS.gene58084:CDS
GCTTTCACAGTTTCTCTCAC+AGG 0.511069 8.4:+3543315 MS.gene58084:CDS
TCCTAATTCCATAGCAGCCT+CGG 0.521629 8.4:-3546408 None:intergenic
TCTGTTCGAGACTGTGAAGA+AGG 0.525704 8.4:+3545857 MS.gene58084:CDS
TTGTCCAAGTAGAATCAAAT+CGG 0.528710 8.4:+3545889 MS.gene58084:CDS
ATGCCACCAGGTCTCGGTGA+AGG 0.535474 8.4:+3547010 MS.gene58084:CDS
GGCGGAATGCTCGGTCAGCT+CGG 0.544938 8.4:+3545822 MS.gene58084:CDS
TGCCACCAGGTCTCGGTGAA+GGG 0.550963 8.4:+3547011 MS.gene58084:CDS
GTGCTAACGTAGTTGATATG+AGG 0.552449 8.4:+3543952 MS.gene58084:CDS
CATATCAACTACGTTAGCAC+TGG 0.554883 8.4:-3543949 None:intergenic
TTCAACCCTTCACCGAGACC+TGG 0.556038 8.4:-3547016 None:intergenic
TGCACACCAGAAGAGTGTCC+AGG 0.557903 8.4:+3546855 MS.gene58084:CDS
TTGATATGAGGTTAGTATCC+CGG 0.570131 8.4:+3543964 MS.gene58084:CDS
GACTGTGAAGAAGGCGCAAG+CGG 0.577851 8.4:+3545866 MS.gene58084:CDS
AGAGTCCACGCCCTCTTCGG+AGG 0.582564 8.4:+3544026 MS.gene58084:CDS
CTCACAGTAACCATCAAACT+CGG 0.600828 8.4:-3546040 None:intergenic
GTTCCGGTTTGAGCATTGAG+TGG 0.601986 8.4:-3543352 None:intergenic
TTGAGCATTGAGTGGTTGCG+TGG 0.613680 8.4:-3543344 None:intergenic
CAGAGTTTAGGAATGCCACC+AGG 0.628036 8.4:+3546998 MS.gene58084:CDS
GAGTTTGATGGTTACTGTGA+GGG 0.628368 8.4:+3546042 MS.gene58084:CDS
AACCCTTCACCGAGACCTGG+TGG 0.649082 8.4:-3547013 None:intergenic
CGAGTTTGATGGTTACTGTG+AGG 0.677449 8.4:+3546041 MS.gene58084:CDS
ATGAGGTTAGTATCCCGGCG+TGG 0.743978 8.4:+3543969 MS.gene58084:CDS
TGTACGAACACAAATTACCG+AGG 0.748644 8.4:+3546391 MS.gene58084:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAATAAATGAACAC+AGG - chr8.4:3545087-3545106 None:intergenic 15.0%
!! AAATAAATTGACATAAACTA+AGG - chr8.4:3543477-3543496 None:intergenic 15.0%
!! ATATTCATAATAATTATTGG+TGG + chr8.4:3545780-3545799 MS.gene58084:intron 15.0%
!! ATTTGATATTTAAACATCTT+TGG + chr8.4:3546790-3546809 MS.gene58084:intron 15.0%
!! TACCAAATTAATTTATACAT+CGG + chr8.4:3545197-3545216 MS.gene58084:intron 15.0%
!! TATTCATAATAATTATTGGT+GGG + chr8.4:3545781-3545800 MS.gene58084:intron 15.0%
!! TTGAATAAAATTTGTGAAAT+AGG + chr8.4:3545153-3545172 MS.gene58084:intron 15.0%
!! TTTGATATTTAAACATCTTT+GGG + chr8.4:3546791-3546810 MS.gene58084:intron 15.0%
!!! AAGAAAATCACTTTTATATT+TGG + chr8.4:3545625-3545644 MS.gene58084:intron 15.0%
!!! ACAAATTTTATTCAATGTAA+GGG - chr8.4:3545148-3545167 None:intergenic 15.0%
!!! AGAAAATCACTTTTATATTT+GGG + chr8.4:3545626-3545645 MS.gene58084:intron 15.0%
!!! ATAATTTGTAATTACACAAA+TGG - chr8.4:3544569-3544588 None:intergenic 15.0%
!!! CTTTTTCAATAATCTAAATA+TGG + chr8.4:3546754-3546773 MS.gene58084:intron 15.0%
!!! GTAAATTATTTGATCTTTTT+AGG + chr8.4:3546606-3546625 MS.gene58084:intron 15.0%
!!! TAATTTGTAATTACACAAAT+GGG - chr8.4:3544568-3544587 None:intergenic 15.0%
!! AACCGATGTATAAATTAATT+TGG - chr8.4:3545202-3545221 None:intergenic 20.0%
!! ATAATATAATAGATCTGCAA+TGG + chr8.4:3546232-3546251 MS.gene58084:intron 20.0%
!! TAATAGCTATACTATGATTT+AGG + chr8.4:3546538-3546557 MS.gene58084:intron 20.0%
!! TCCATCAAATTAAAAATTGT+TGG + chr8.4:3545713-3545732 MS.gene58084:intron 20.0%
!! TTTATAAGGTGAACAAAAAT+AGG + chr8.4:3546569-3546588 MS.gene58084:intron 20.0%
!!! AAATAAAAGTGCAAAATTCA+AGG - chr8.4:3543513-3543532 None:intergenic 20.0%
!!! AGTGATTTTCTTTTTTGTAT+TGG - chr8.4:3545617-3545636 None:intergenic 20.0%
!!! ATAAATTAATTTGGTACACA+TGG - chr8.4:3545193-3545212 None:intergenic 20.0%
!!! CAATTTTTAATTTGATGGAT+TGG - chr8.4:3545712-3545731 None:intergenic 20.0%
!!! CACAAATTTTATTCAATGTA+AGG - chr8.4:3545149-3545168 None:intergenic 20.0%
!!! CATTTATTTTATTTTCTCGT+GGG + chr8.4:3545092-3545111 MS.gene58084:intron 20.0%
!!! GTTTTATAAAGGTCTTAATT+AGG + chr8.4:3545429-3545448 MS.gene58084:intron 20.0%
!!! TAGTTTGATTTTCTGATTTT+TGG + chr8.4:3543767-3543786 MS.gene58084:intron 20.0%
!!! TCATTTATTTTATTTTCTCG+TGG + chr8.4:3545091-3545110 MS.gene58084:intron 20.0%
!!! TCCAACAATTTTTAATTTGA+TGG - chr8.4:3545717-3545736 None:intergenic 20.0%
!!! TTTAGGATTAGACTTTTATA+AGG + chr8.4:3546555-3546574 MS.gene58084:intron 20.0%
!!! TTTGATTAGGTTTAATTTTC+AGG + chr8.4:3546343-3546362 MS.gene58084:intron 20.0%
!!! TTTTATATTTGGGAAAATGT+TGG + chr8.4:3545636-3545655 MS.gene58084:intron 20.0%
! AACAAATCAACATACTACAA+AGG - chr8.4:3546921-3546940 None:intergenic 25.0%
! AATGAAATTAAAGTGCGTAA+TGG - chr8.4:3543445-3543464 None:intergenic 25.0%
! ATCAGAAAATCAAACTAACT+AGG - chr8.4:3543764-3543783 None:intergenic 25.0%
! ATGCTTTCATCAAAGAAAAA+TGG - chr8.4:3544240-3544259 None:intergenic 25.0%
! CTGCTTAAGGAAAATTTATA+AGG + chr8.4:3546629-3546648 MS.gene58084:intron 25.0%
! GAAAACTACAAAAGTTTAAG+CGG - chr8.4:3545362-3545381 None:intergenic 25.0%
! GACATGTAAATTATGTAGTA+AGG + chr8.4:3544868-3544887 MS.gene58084:intron 25.0%
! GCAAAATTCAAGGTTTAAAT+TGG - chr8.4:3543503-3543522 None:intergenic 25.0%
! GGAAAAAAAGATAATGAAAG+TGG + chr8.4:3544047-3544066 MS.gene58084:CDS 25.0%
! TAATGAAAGTGGTGATAATA+AGG + chr8.4:3544058-3544077 MS.gene58084:CDS 25.0%
! TACATAGAGATGATGATAAA+GGG - chr8.4:3543377-3543396 None:intergenic 25.0%
! TCAGAAAATCAAACTAACTA+GGG - chr8.4:3543763-3543782 None:intergenic 25.0%
! TCTAAATATGGTCTAGAAAT+TGG + chr8.4:3546766-3546785 MS.gene58084:intron 25.0%
! TCTTAAAATGCATCTTTGTA+AGG - chr8.4:3544450-3544469 None:intergenic 25.0%
! TGCATAAGTGACAATTATTA+AGG + chr8.4:3544195-3544214 MS.gene58084:intron 25.0%
! TTACATAGAGATGATGATAA+AGG - chr8.4:3543378-3543397 None:intergenic 25.0%
! TTATAAAAAACCTCTTCTAC+AGG + chr8.4:3544349-3544368 MS.gene58084:intron 25.0%
! TTGAAACATTCAAATACCAT+GGG - chr8.4:3543678-3543697 None:intergenic 25.0%
! TTTGTTAATTGATTATAGGG+CGG + chr8.4:3545804-3545823 MS.gene58084:intron 25.0%
!! AATTTTTATGCACTGAATGT+TGG + chr8.4:3546714-3546733 MS.gene58084:intron 25.0%
!! ATGCACAACATGTTTTATAA+AGG + chr8.4:3545418-3545437 MS.gene58084:intron 25.0%
!! ATTTTGTTAGTTGAATTCCT+TGG + chr8.4:3543609-3543628 MS.gene58084:intron 25.0%
!! ATTTTTATGCACTGAATGTT+GGG + chr8.4:3546715-3546734 MS.gene58084:intron 25.0%
!! GATTCTCTTATAGTTTTTCT+TGG - chr8.4:3544942-3544961 None:intergenic 25.0%
!! TAATGAGTTGGATAGAAATA+TGG + chr8.4:3544983-3545002 MS.gene58084:intron 25.0%
!! TTTAACATTACGAAGTATCA+TGG - chr8.4:3544539-3544558 None:intergenic 25.0%
!! TTTGAAACATTCAAATACCA+TGG - chr8.4:3543679-3543698 None:intergenic 25.0%
!!! AAGTTTATTTTCCAACGATA+CGG - chr8.4:3543546-3543565 None:intergenic 25.0%
!!! CTGTTTACTTCATTTTGATT+AGG + chr8.4:3546330-3546349 MS.gene58084:intron 25.0%
!!! CTTGAAAAGTTATTTTTACC+TGG - chr8.4:3546876-3546895 None:intergenic 25.0%
!!! GGGTTTGTTAATTGATTATA+GGG + chr8.4:3545801-3545820 MS.gene58084:intron 25.0%
!!! GGTAAAAATAACTTTTCAAG+AGG + chr8.4:3546876-3546895 MS.gene58084:intron 25.0%
!!! GTTGTTGACTTTAATTCTAT+AGG + chr8.4:3543915-3543934 MS.gene58084:intron 25.0%
!!! TGGGTTTGTTAATTGATTAT+AGG + chr8.4:3545800-3545819 MS.gene58084:intron 25.0%
!!! TGTATTGGACTTTTTAAAGA+GGG - chr8.4:3545602-3545621 None:intergenic 25.0%
!!! TTGTATTGGACTTTTTAAAG+AGG - chr8.4:3545603-3545622 None:intergenic 25.0%
AAAATGTTAGAGAAGAACCT+CGG + chr8.4:3546156-3546175 MS.gene58084:intron 30.0%
AAACCAAGAAATGGGTAATA+TGG - chr8.4:3546301-3546320 None:intergenic 30.0%
AAGCAAACAGATAGCAAATA+TGG - chr8.4:3544164-3544183 None:intergenic 30.0%
AATGAATGAATACTCAGACA+GGG + chr8.4:3544118-3544137 MS.gene58084:intron 30.0%
AATGGCAATGAAAAAAGTCA+TGG - chr8.4:3544222-3544241 None:intergenic 30.0%
ACCAAACTGATAATTTACCA+AGG - chr8.4:3543629-3543648 None:intergenic 30.0%
ACTAAGGAAAAACACATTCA+CGG - chr8.4:3543715-3543734 None:intergenic 30.0%
AGATCTAGAGATTAATGAGT+TGG + chr8.4:3544971-3544990 MS.gene58084:intron 30.0%
AGTACACAAATATTGTGAAC+TGG + chr8.4:3545273-3545292 MS.gene58084:intron 30.0%
ATATATCATCCAACTCAGAA+GGG - chr8.4:3545548-3545567 None:intergenic 30.0%
ATCTGTTATAAGACTGCATT+AGG + chr8.4:3544470-3544489 MS.gene58084:intron 30.0%
ATGAAAGTGAAACCAAGAAA+TGG - chr8.4:3546310-3546329 None:intergenic 30.0%
ATTGAAAGGTTTCTATTGCT+TGG - chr8.4:3544513-3544532 None:intergenic 30.0%
CGCTTAATTTATTTACGTGT+TGG - chr8.4:3544692-3544711 None:intergenic 30.0%
CTATTAGTCATCACTTATCA+CGG - chr8.4:3546524-3546543 None:intergenic 30.0%
GTAATTACACAAATGGGAAA+AGG - chr8.4:3544562-3544581 None:intergenic 30.0%
GTACACAAATATTGTGAACT+GGG + chr8.4:3545274-3545293 MS.gene58084:intron 30.0%
TCCTTGGTAAATTATCAGTT+TGG + chr8.4:3543625-3543644 MS.gene58084:intron 30.0%
TGAAAGTGAAACCAAGAAAT+GGG - chr8.4:3546309-3546328 None:intergenic 30.0%
TGGTATATGATAGAGCATAA+TGG + chr8.4:3545003-3545022 MS.gene58084:intron 30.0%
TGTGATTAACTCGTATAACT+TGG - chr8.4:3545984-3546003 None:intergenic 30.0%
TTGAAAGGTTTCTATTGCTT+GGG - chr8.4:3544512-3544531 None:intergenic 30.0%
TTGTCCAAGTAGAATCAAAT+CGG + chr8.4:3545889-3545908 MS.gene58084:CDS 30.0%
TTGTGAGAACTTCTCATATT+TGG + chr8.4:3544410-3544429 MS.gene58084:intron 30.0%
! GACATTACTTCACACATTTT+GGG + chr8.4:3543817-3543836 MS.gene58084:intron 30.0%
! GATTAGATCCAACTTTTTGT+AGG - chr8.4:3543995-3544014 None:intergenic 30.0%
! TAATGATTGAGTTTTCGCTT+CGG - chr8.4:3545512-3545531 None:intergenic 30.0%
! TGACATTACTTCACACATTT+TGG + chr8.4:3543816-3543835 MS.gene58084:intron 30.0%
! TTTTCTCACATAAGCATGAA+AGG - chr8.4:3546132-3546151 None:intergenic 30.0%
! TTTTTATGCACTGAATGTTG+GGG + chr8.4:3546716-3546735 MS.gene58084:intron 30.0%
!! TTCTTTGATGAAAGCATTAC+AGG + chr8.4:3544243-3544262 MS.gene58084:intron 30.0%
!!! ACACTGTGAATTCAGTTTTT+TGG + chr8.4:3544618-3544637 MS.gene58084:intron 30.0%
AAACTAGACTTAGGTGGTTT+GGG + chr8.4:3544832-3544851 MS.gene58084:intron 35.0%
AACAACATTAGAGAGAGAGT+TGG + chr8.4:3544780-3544799 MS.gene58084:intron 35.0%
AATGAGATGAAGATCGAACA+AGG - chr8.4:3544281-3544300 None:intergenic 35.0%
ACAACATTAGAGAGAGAGTT+GGG + chr8.4:3544781-3544800 MS.gene58084:intron 35.0%
ACCTATAGTAGAAAAGATGG+TGG + chr8.4:3544809-3544828 MS.gene58084:intron 35.0%
ACTAGGGAAAAACACATTCT+AGG - chr8.4:3543747-3543766 None:intergenic 35.0%
AGCACCTATAGTAGAAAAGA+TGG + chr8.4:3544806-3544825 MS.gene58084:intron 35.0%
AGTAAGGAGAATAGATCAGA+TGG + chr8.4:3544884-3544903 MS.gene58084:intron 35.0%
ATGGAAAAAGAAAGCTGAGA+TGG - chr8.4:3544088-3544107 None:intergenic 35.0%
ATGTGTGAAGTAATGTCAGT+AGG - chr8.4:3543814-3543833 None:intergenic 35.0%
ATTGATCCATGACAAACCTT+CGG + chr8.4:3545467-3545486 MS.gene58084:intron 35.0%
CATATATCATCCAACTCAGA+AGG - chr8.4:3545549-3545568 None:intergenic 35.0%
CATGTTATCCTTTGTTCGTA+TGG + chr8.4:3544642-3544661 MS.gene58084:intron 35.0%
GAATGAATGAATACTCAGAC+AGG + chr8.4:3544117-3544136 MS.gene58084:intron 35.0%
GAGAGTAGTCAAATTACTAG+AGG + chr8.4:3544906-3544925 MS.gene58084:intron 35.0%
GCTATTAGATACAATCTGAC+AGG - chr8.4:3546486-3546505 None:intergenic 35.0%
GTACCATATTACCCATTTCT+TGG + chr8.4:3546295-3546314 MS.gene58084:intron 35.0%
GTTATAAGACTGCATTAGGT+AGG + chr8.4:3544474-3544493 MS.gene58084:intron 35.0%
TAATATCCACCTTCAATGCT+AGG + chr8.4:3544591-3544610 MS.gene58084:intron 35.0%
TACCCTTTGACATATAGCTA+GGG + chr8.4:3543565-3543584 MS.gene58084:intron 35.0%
TATATCATCCAACTCAGAAG+GGG - chr8.4:3545547-3545566 None:intergenic 35.0%
TATTCCTCAAACAAGTCACA+AGG + chr8.4:3545221-3545240 MS.gene58084:intron 35.0%
TATTGTGAACTGGGTAAAAG+AGG + chr8.4:3545283-3545302 MS.gene58084:intron 35.0%
TGTGTGAAGTAATGTCAGTA+GGG - chr8.4:3543813-3543832 None:intergenic 35.0%
TTACCCTTTGACATATAGCT+AGG + chr8.4:3543564-3543583 MS.gene58084:intron 35.0%
TTGATATGAGGTTAGTATCC+CGG + chr8.4:3543964-3543983 MS.gene58084:CDS 35.0%
! AACATTACGAAGTATCATGG+TGG - chr8.4:3544536-3544555 None:intergenic 35.0%
! AGTGTAATTCCTAGCATTGA+AGG - chr8.4:3544603-3544622 None:intergenic 35.0%
! GTATCCGATTTGATTCTACT+TGG - chr8.4:3545896-3545915 None:intergenic 35.0%
! GTTGCAGAAACTTTCACTTT+TGG + chr8.4:3546813-3546832 MS.gene58084:intron 35.0%
! TCATTCATTCGTAGCATTGA+TGG - chr8.4:3544107-3544126 None:intergenic 35.0%
! TCCACCATCTTTTCTACTAT+AGG - chr8.4:3544813-3544832 None:intergenic 35.0%
!! AACTTCTCATATTTGGTGTG+TGG + chr8.4:3544417-3544436 MS.gene58084:intron 35.0%
!! AAGTATCATGGTGGATTGAA+AGG - chr8.4:3544527-3544546 None:intergenic 35.0%
!! ATGCTGTTGCTTATGTTTTC+AGG + chr8.4:3546946-3546965 MS.gene58084:intron 35.0%
!! TGATCTTTTTAGGCTGCTTA+AGG + chr8.4:3546616-3546635 MS.gene58084:intron 35.0%
!!! AATTTTCAGGTGACACTATC+AGG + chr8.4:3546356-3546375 MS.gene58084:intron 35.0%
!!! ATCTTTTTTTCCTCCGAAGA+GGG - chr8.4:3544039-3544058 None:intergenic 35.0%
!!! ATTTTCAGGTGACACTATCA+GGG + chr8.4:3546357-3546376 MS.gene58084:intron 35.0%
!!! TATCTTTTTTTCCTCCGAAG+AGG - chr8.4:3544040-3544059 None:intergenic 35.0%
AAAGAACACTCCTGTAGAAG+AGG - chr8.4:3544362-3544381 None:intergenic 40.0%
AAGTTTAAGCGGTGCTTCTA+TGG - chr8.4:3545351-3545370 None:intergenic 40.0%
ACTCTGTTCCATACGAACAA+AGG - chr8.4:3544653-3544672 None:intergenic 40.0%
AGCCCTAGCTATATGTCAAA+GGG - chr8.4:3543570-3543589 None:intergenic 40.0%
AGTAATGTCAGTAGGGACTA+TGG - chr8.4:3543806-3543825 None:intergenic 40.0%
AGTGATCTTGCTCAGAGTTT+AGG + chr8.4:3546986-3547005 MS.gene58084:CDS 40.0%
ATCACTCATCCTTTCCTTCA+TGG - chr8.4:3546972-3546991 None:intergenic 40.0%
CAACATTAGAGAGAGAGTTG+GGG + chr8.4:3544782-3544801 MS.gene58084:intron 40.0%
CATATCAACTACGTTAGCAC+TGG - chr8.4:3543952-3543971 None:intergenic 40.0%
CTCACAGTAACCATCAAACT+CGG - chr8.4:3546043-3546062 None:intergenic 40.0%
CTGTGAGGGTGAGTTAATAA+AGG + chr8.4:3546056-3546075 MS.gene58084:CDS 40.0%
CTTCTATGGATCAAGTCTCT+TGG - chr8.4:3545337-3545356 None:intergenic 40.0%
GAAACTAGACTTAGGTGGTT+TGG + chr8.4:3544831-3544850 MS.gene58084:intron 40.0%
GAGATGATGATAAAGGGTTC+CGG - chr8.4:3543371-3543390 None:intergenic 40.0%
GCACAATATCATGTGACACA+TGG + chr8.4:3545673-3545692 MS.gene58084:intron 40.0%
TAGAGATGAGGATGTTGCAT+TGG + chr8.4:3544721-3544740 MS.gene58084:intron 40.0%
TAGCCCTAGCTATATGTCAA+AGG - chr8.4:3543571-3543590 None:intergenic 40.0%
TGTACGAACACAAATTACCG+AGG + chr8.4:3546391-3546410 MS.gene58084:CDS 40.0%
! AGTTTTCGCTTCGGCATATA+AGG - chr8.4:3545503-3545522 None:intergenic 40.0%
! GAGTTTGATGGTTACTGTGA+GGG + chr8.4:3546042-3546061 MS.gene58084:CDS 40.0%
! GGGAAAAACACATTCTAGGA+TGG - chr8.4:3543743-3543762 None:intergenic 40.0%
! GTAATTCCTAGCATTGAAGG+TGG - chr8.4:3544600-3544619 None:intergenic 40.0%
! GTGCTAACGTAGTTGATATG+AGG + chr8.4:3543952-3543971 MS.gene58084:CDS 40.0%
! TAAAAGAGGTTCTGGTAGTG+TGG + chr8.4:3545297-3545316 MS.gene58084:intron 40.0%
! TCGGTAATTTGTGTTCGTAC+AGG - chr8.4:3546392-3546411 None:intergenic 40.0%
! TTCGTATGGAACAGAGTGTT+GGG + chr8.4:3544656-3544675 MS.gene58084:intron 40.0%
! TTTTTACCTGGACACTCTTC+TGG - chr8.4:3546864-3546883 None:intergenic 40.0%
!! ACTTTCACTTTTGGTCACAG+AGG + chr8.4:3546822-3546841 MS.gene58084:CDS 40.0%
!! AGATGGTGGAAACTAGACTT+AGG + chr8.4:3544823-3544842 MS.gene58084:intron 40.0%
!! AGTACCTTGTGACTTGTTTG+AGG - chr8.4:3545228-3545247 None:intergenic 40.0%
!! CTTATGTTTTCAGGCCATGA+AGG + chr8.4:3546955-3546974 MS.gene58084:intron 40.0%
ACAAATTACCGAGGCTGCTA+TGG + chr8.4:3546400-3546419 MS.gene58084:CDS 45.0%
AGGATGTTGCATTGGATGTG+TGG + chr8.4:3544729-3544748 MS.gene58084:intron 45.0%
ATAAGGCAGTGAAGAACCGA+AGG - chr8.4:3545486-3545505 None:intergenic 45.0%
CAACCACTCAATGCTCAAAC+CGG + chr8.4:3543349-3543368 MS.gene58084:CDS 45.0%
CAACTCTAACTATTGTGCCG+AGG - chr8.4:3546176-3546195 None:intergenic 45.0%
CACAACATTAGAGAGAGAGC+AGG - chr8.4:3546093-3546112 None:intergenic 45.0%
GAACTGGGTAAAAGAGGTTC+TGG + chr8.4:3545289-3545308 MS.gene58084:intron 45.0%
GAAGAACCGAAGGTTTGTCA+TGG - chr8.4:3545476-3545495 None:intergenic 45.0%
GCTCTCTCTCTAATGTTGTG+TGG + chr8.4:3546093-3546112 MS.gene58084:intron 45.0%
GCTTTCACAGTTTCTCTCAC+AGG + chr8.4:3543315-3543334 MS.gene58084:CDS 45.0%
GTTCGTATGGAACAGAGTGT+TGG + chr8.4:3544655-3544674 MS.gene58084:intron 45.0%
TCCTAATTCCATAGCAGCCT+CGG - chr8.4:3546411-3546430 None:intergenic 45.0%
TCTGTTCGAGACTGTGAAGA+AGG + chr8.4:3545857-3545876 MS.gene58084:CDS 45.0%
TGATTATAGGGCGGAATGCT+CGG + chr8.4:3545813-3545832 MS.gene58084:intron 45.0%
TGGTGGAAACTAGACTTAGG+TGG + chr8.4:3544826-3544845 MS.gene58084:intron 45.0%
TTCGTGTTTGACCGTATCGT+TGG + chr8.4:3543532-3543551 MS.gene58084:intron 45.0%
TTTGGTCACAGAGGCTTACA+AGG + chr8.4:3546831-3546850 MS.gene58084:CDS 45.0%
! AAGCCTTATCCCACTATGTG+GGG - chr8.4:3545052-3545071 None:intergenic 45.0%
! CAAGCCTTATCCCACTATGT+GGG - chr8.4:3545053-3545072 None:intergenic 45.0%
! CGAGTTTGATGGTTACTGTG+AGG + chr8.4:3546041-3546060 MS.gene58084:CDS 45.0%
!! GTTTTCAGGCCATGAAGGAA+AGG + chr8.4:3546960-3546979 MS.gene58084:intron 45.0%
!! TTCTAGGATGGCACTCACTA+AGG - chr8.4:3543731-3543750 None:intergenic 45.0%
!! ATAATATTCATAATAATTAT+TGG + chr8.4:3545777-3545796 MS.gene58084:intron 5.0%
!!! AATTATTGTTTTTTTTTTTT+TGG + chr8.4:3545952-3545971 MS.gene58084:intron 5.0%
ACCCTTTCCTTGAGTCTGCA+AGG + chr8.4:3546260-3546279 MS.gene58084:intron 50.0%
ACCGAGGCTGCTATGGAATT+AGG + chr8.4:3546407-3546426 MS.gene58084:CDS 50.0%
AGTTCTTGCCCCTTCTGAGT+TGG + chr8.4:3545536-3545555 MS.gene58084:intron 50.0%
ATCTCTGCCTTGCAGACTCA+AGG - chr8.4:3546270-3546289 None:intergenic 50.0%
CAAGTCTCTTGGATGCAGAC+AGG - chr8.4:3545326-3545345 None:intergenic 50.0%
CAGAGTTTAGGAATGCCACC+AGG + chr8.4:3546998-3547017 MS.gene58084:CDS 50.0%
CTATGCAGAGCCGAGTTTGA+TGG + chr8.4:3546030-3546049 MS.gene58084:intron 50.0%
CTTATCCCACTATGTGGGGT+CGG - chr8.4:3545048-3545067 None:intergenic 50.0%
GCCTTGCAGACTCAAGGAAA+GGG - chr8.4:3546264-3546283 None:intergenic 50.0%
GCGACAGCGTAATAGAGATG+AGG + chr8.4:3544709-3544728 MS.gene58084:intron 50.0%
TCAAACTCGGCTCTGCATAG+TGG - chr8.4:3546030-3546049 None:intergenic 50.0%
TGCAGACTCAAGGAAAGGGT+TGG - chr8.4:3546260-3546279 None:intergenic 50.0%
TGCCTTGCAGACTCAAGGAA+AGG - chr8.4:3546265-3546284 None:intergenic 50.0%
TTAGGAATGCCACCAGGTCT+CGG + chr8.4:3547004-3547023 MS.gene58084:CDS 50.0%
! AACTTTTTGTAGGCCACGCC+GGG - chr8.4:3543985-3544004 None:intergenic 50.0%
! CAACTTTTTGTAGGCCACGC+CGG - chr8.4:3543986-3544005 None:intergenic 50.0%
! CCAAGCCTTATCCCACTATG+TGG - chr8.4:3545054-3545073 None:intergenic 50.0%
! CCACATAGTGGGATAAGGCT+TGG + chr8.4:3545051-3545070 MS.gene58084:intron 50.0%
!! GTTCCGGTTTGAGCATTGAG+TGG - chr8.4:3543355-3543374 None:intergenic 50.0%
!! TTGAGCATTGAGTGGTTGCG+TGG - chr8.4:3543347-3543366 None:intergenic 50.0%
ACTATGTGGGGTCGGCTACA+TGG - chr8.4:3545040-3545059 None:intergenic 55.0%
ATGAGGTTAGTATCCCGGCG+TGG + chr8.4:3543969-3543988 MS.gene58084:CDS 55.0%
ATGTAGCCGACCCCACATAG+TGG + chr8.4:3545039-3545058 MS.gene58084:intron 55.0%
CGGCGTGGCCTACAAAAAGT+TGG + chr8.4:3543984-3544003 MS.gene58084:CDS 55.0%
GGTCGGCTACATGGATCAGA+CGG - chr8.4:3545031-3545050 None:intergenic 55.0%
GTCAAGCGCAGAACAACCCA+TGG + chr8.4:3543659-3543678 MS.gene58084:intron 55.0%
TGTAGCCGACCCCACATAGT+GGG + chr8.4:3545040-3545059 MS.gene58084:intron 55.0%
TTCAACCCTTCACCGAGACC+TGG - chr8.4:3547019-3547038 None:intergenic 55.0%
TTCAGAGTCCACGCCCTCTT+CGG + chr8.4:3544023-3544042 MS.gene58084:CDS 55.0%
! CGACCCCACATAGTGGGATA+AGG + chr8.4:3545046-3545065 MS.gene58084:intron 55.0%
! GACTGTGAAGAAGGCGCAAG+CGG + chr8.4:3545866-3545885 MS.gene58084:CDS 55.0%
! TTTTTCCTCCGAAGAGGGCG+TGG - chr8.4:3544034-3544053 None:intergenic 55.0%
!! TGCACACCAGAAGAGTGTCC+AGG + chr8.4:3546855-3546874 MS.gene58084:CDS 55.0%
AACCCTTCACCGAGACCTGG+TGG - chr8.4:3547016-3547035 None:intergenic 60.0%
ATGCCACCAGGTCTCGGTGA+AGG + chr8.4:3547010-3547029 MS.gene58084:CDS 60.0%
TGCCACCAGGTCTCGGTGAA+GGG + chr8.4:3547011-3547030 MS.gene58084:CDS 60.0%
AGAGTCCACGCCCTCTTCGG+AGG + chr8.4:3544026-3544045 MS.gene58084:CDS 65.0%
GGCGGAATGCTCGGTCAGCT+CGG + chr8.4:3545822-3545841 MS.gene58084:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 3543312 3547042 3543312 ID=MS.gene58084
chr8.4 mRNA 3543312 3547042 3543312 ID=MS.gene58084.t1;Parent=MS.gene58084
chr8.4 exon 3543312 3543393 3543312 ID=MS.gene58084.t1.exon1;Parent=MS.gene58084.t1
chr8.4 CDS 3543312 3543393 3543312 ID=cds.MS.gene58084.t1;Parent=MS.gene58084.t1
chr8.4 exon 3543937 3544079 3543937 ID=MS.gene58084.t1.exon2;Parent=MS.gene58084.t1
chr8.4 CDS 3543937 3544079 3543937 ID=cds.MS.gene58084.t1;Parent=MS.gene58084.t1
chr8.4 exon 3545822 3545931 3545822 ID=MS.gene58084.t1.exon3;Parent=MS.gene58084.t1
chr8.4 CDS 3545822 3545931 3545822 ID=cds.MS.gene58084.t1;Parent=MS.gene58084.t1
chr8.4 exon 3546038 3546077 3546038 ID=MS.gene58084.t1.exon4;Parent=MS.gene58084.t1
chr8.4 CDS 3546038 3546077 3546038 ID=cds.MS.gene58084.t1;Parent=MS.gene58084.t1
chr8.4 exon 3546365 3546436 3546365 ID=MS.gene58084.t1.exon5;Parent=MS.gene58084.t1
chr8.4 CDS 3546365 3546436 3546365 ID=cds.MS.gene58084.t1;Parent=MS.gene58084.t1
chr8.4 exon 3546820 3546876 3546820 ID=MS.gene58084.t1.exon6;Parent=MS.gene58084.t1
chr8.4 CDS 3546820 3546876 3546820 ID=cds.MS.gene58084.t1;Parent=MS.gene58084.t1
chr8.4 exon 3546968 3547042 3546968 ID=MS.gene58084.t1.exon7;Parent=MS.gene58084.t1
chr8.4 CDS 3546968 3547042 3546968 ID=cds.MS.gene58084.t1;Parent=MS.gene58084.t1
Gene Sequence

>MS.gene58084

ATGGCTTTCACAGTTTCTCTCACAGGTCACATCCACGCAACCACTCAATGCTCAAACCGGAACCCTTTATCATCATCTCTATGTAAGTATTCTTTCTTTTTCACTTTAACATCATGCTCGCTTTGCTTTTCCATTACGCACTTTAATTTCATTTTCAATTATCCTTAGTTTATGTCAATTTATTTTCACCAATTTAAACCTTGAATTTTGCACTTTTATTTTCGTGTTTGACCGTATCGTTGGAAAATAAACTTACCCTTTGACATATAGCTAGGGCTATAGACTAAGAGATAAAATATTTTGTTAGTTGAATTCCTTGGTAAATTATCAGTTTGGTTCTTGAATGTGTCAAGCGCAGAACAACCCATGGTATTTGAATGTTTCAAAATTACAAAAACATCCGTGAATGTGTTTTTCCTTAGTGAGTGCCATCCTAGAATGTGTTTTTCCCTAGTTAGTTTGATTTTCTGATTTTTGGATACACTTAGCGACCATAGTCCCTACTGACATTACTTCACACATTTTGGGACTAAAATGACGATTTGCTCTTGTGAATTCATACATGCTTTGATTATCAAATTACTGTTTATCGATGAATTATTTGTTGTTGACTTTAATTCTATAGGTAAACTAAGCTCCAGTGCTAACGTAGTTGATATGAGGTTAGTATCCCGGCGTGGCCTACAAAAAGTTGGATCTAATCATAGAAATTTCAGAGTCCACGCCCTCTTCGGAGGAAAAAAAGATAATGAAAGTGGTGATAATAAGGTTAGCCATCTCAGCTTTCTTTTTCCATCAATGCTACGAATGAATGAATACTCAGACAGGGTCACAAACTTGCATTTGTATCCATATTTGCTATCTGTTTGCTTTTTTCATCATTTGCATAAGTGACAATTATTAAGGACCATGACTTTTTTCATTGCCATTTTTCTTTGATGAAAGCATTACAGGTTTTGTTTTTCTCCTTGTTCGATCTTCATCTCATTAGTCAACTATTATTATATTGTGCATGAGAGAAATGAATAAGTGATAGCTTATAAAAAACCTCTTCTACAGGAGTGTTCTTTTCTTGAATGCTAATCTATCACTTTTTCTTTGTGAGAACTTCTCATATTTGGTGTGTGGAATAGTTCCTTACAAAGATGCATTTTAAGAATCTGTTATAAGACTGCATTAGGTAGGATACGAGATTCTCCCAAGCAATAGAAACCTTTCAATCCACCATGATACTTCGTAATGTTAAACCTTTTCCCATTTGTGTAATTACAAATTATGATAATATCCACCTTCAATGCTAGGAATTACACTGTGAATTCAGTTTTTTGGTCATGTTATCCTTTGTTCGTATGGAACAGAGTGTTGGGCTGTCAAGAACCAACACGTAAATAAATTAAGCGACAGCGTAATAGAGATGAGGATGTTGCATTGGATGTGTGGTAAGACTAGATGAGATATGATTTGAAATAACAACATTAGAGAGAGAGTTGGGGTAGCACCTATAGTAGAAAAGATGGTGGAAACTAGACTTAGGTGGTTTGGGCATGTAGAGAGAAGACATGTAAATTATGTAGTAAGGAGAATAGATCAGATGGAGAGTAGTCAAATTACTAGAGGCAAAAGAAGACCAAGAAAAACTATAAGAGAATCTACTAAGAAAGATCTAGAGATTAATGAGTTGGATAGAAATATGGTATATGATAGAGCATAATGGCGCCGTCTGATCCATGTAGCCGACCCCACATAGTGGGATAAGGCTTGGTTGTTGCTATCCTGTGTTCATTTATTTTATTTTCTCGTGGGCTGAAGACAATTAGCGAAATGCAAACAAAACCCTTACATTGAATAAAATTTGTGAAATAGGTACATAGTGATTCTCCATGTGTACCAAATTAATTTATACATCGGTTATTCCTCAAACAAGTCACAAGGTACTTTTGATTCTCTTTTCAAAATTACGAAGTACACAAATATTGTGAACTGGGTAAAAGAGGTTCTGGTAGTGTGGTTTCCTGTCTGCATCCAAGAGACTTGATCCATAGAAGCACCGCTTAAACTTTTGTAGTTTTCTTGCACTTACAAAGACACTGTTTCAGAGATTTTCTGATGCACAACATGTTTTATAAAGGTCTTAATTAGGATATGCATTTGTGATATTGATCCATGACAAACCTTCGGTTCTTCACTGCCTTATATGCCGAAGCGAAAACTCAATCATTAAAGTAGTTCTTGCCCCTTCTGAGTTGGATGATATATGATATTATCACTGTGAAGAATAAATCTATTACCCTCTTTAAAAAGTCCAATACAAAAAAGAAAATCACTTTTATATTTGGGAAAATGTTGGTAACTCATTCGATTGCACAATATCATGTGACACATGGACAGCATGCTAGTCCAATCCATCAAATTAAAAATTGTTGGAGTATTGTATTGTGTGTTTGTCAATCTGACAGTAACTGATCATAATATTCATAATAATTATTGGTGGGTTTGTTAATTGATTATAGGGCGGAATGCTCGGTCAGCTCGGAAACATGCAAAATCTGTTCGAGACTGTGAAGAAGGCGCAAGCGGTTGTCCAAGTAGAATCAAATCGGATACAGAAAGAACTTGCTGCGTATAACATACTTGCTTAACAATTATTGTTTTTTTTTTTTTGGTCTCTTCCAAGTTATACGAGTTAATCACAGTAGAGTTTTTTTTGTCTTTATTCCACTATGCAGAGCCGAGTTTGATGGTTACTGTGAGGGTGAGTTAATAAAGGTATGATATTTTCCTGCTCTCTCTCTAATGTTGTGTGGTAGAAACTAGAAACCTTTCATGCTTATGTGAGAAAATTTGAAAATGTTAGAGAAGAACCTCGGCACAATAGTTAGAGTTGTTGCTGTGTGATTCGAATGTTACGAGATTTAGTCGTATAATATAATAGATCTGCAATGGATCCAACCCTTTCCTTGAGTCTGCAAGGCAGAGATTTATAGTACCATATTACCCATTTCTTGGTTTCACTTTCATCTGTTTACTTCATTTTGATTAGGTTTAATTTTCAGGTGACACTATCAGGGAATCAGCAACCTGTACGAACACAAATTACCGAGGCTGCTATGGAATTAGGATCAGAAGTGAGTATGCAATTCAAGTGATTTCATAACTTCATATGCATTATTTCCTGTCAGATTGTATCTAATAGCATATTGCATACATATCCGTGATAAGTGATGACTAATAGCTATACTATGATTTAGGATTAGACTTTTATAAGGTGAACAAAAATAGGTAAAGAATCTATATGTAAATTATTTGATCTTTTTAGGCTGCTTAAGGAAAATTTATAAGGTGAACAAAAATAGGTAAAGAATCTATATGTAAATTATTTGATCTTTTTAGGCTGCTTAAGGAAATTTTTATGCACTGAATGTTGGGGTAGATATATCAATTACTTTTTCAATAATCTAAATATGGTCTAGAAATTGGCATTTGATATTTAAACATCTTTGGGTTGCAGAAACTTTCACTTTTGGTCACAGAGGCTTACAAGGATGCACACCAGAAGAGTGTCCAGGTAAAAATAACTTTTCAAGAGGAAGAATGAAAATTCATTTGCCTTTGTAGTATGTTGATTTGTTTAAACATGCTGTTGCTTATGTTTTCAGGCCATGAAGGAAAGGATGAGTGATCTTGCTCAGAGTTTAGGAATGCCACCAGGTCTCGGTGAAGGGTTGAAGTGA

Protein sequence

>MS.gene58084.t1

MAFTVSLTGHIHATTQCSNRNPLSSSLCKLSSSANVVDMRLVSRRGLQKVGSNHRNFRVHALFGGKKDNESGDNKGGMLGQLGNMQNLFETVKKAQAVVQVESNRIQKELAAAEFDGYCEGELIKVTLSGNQQPVRTQITEAAMELGSEKLSLLVTEAYKDAHQKSVQAMKERMSDLAQSLGMPPGLGEGLK