AlfalfaGEDB | MS.gene58434

M. sativa cultivar XinJiangDaYe / MS.gene58434

KEGG: K09422
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58434.t1	XP_013441833.1	97.2	218	6	0	1	218	117	334	1.10E-112	416

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58434.t1	P81392	38.2	191	77	9	23	197	142	307	2.3e-10	67.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58434.t1	A0A072TFY2	97.2	218	6	0	1	218	117	334	7.8e-113	416.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049356	MS.gene58434	0.816044	6.77E-52	-1.69E-46
MS.gene049369	MS.gene58434	0.816045	6.77E-52	-1.69E-46
MS.gene049396	MS.gene58434	0.836043	1.18E-56	-1.69E-46
MS.gene050499	MS.gene58434	0.818559	1.84E-52	-1.69E-46
MS.gene050502	MS.gene58434	0.817343	3.46E-52	-1.69E-46
MS.gene050593	MS.gene58434	0.809838	1.55E-50	-1.69E-46
MS.gene050670	MS.gene58434	0.815449	9.19E-52	-1.69E-46
MS.gene050686	MS.gene58434	0.813542	2.43E-51	-1.69E-46
MS.gene050971	MS.gene58434	0.825784	3.88E-54	-1.69E-46
MS.gene051387	MS.gene58434	0.823005	1.75E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58434.t1	MTR_0140s0030	97.248	218	6	0	1	218	117	334	8.20e-155	432
MS.gene58434.t1	MTR_0489s0020	97.248	218	6	0	1	218	117	334	8.20e-155	432
MS.gene58434.t1	MTR_3g039990	38.222	225	95	9	4	218	121	311	1.27e-29	112
MS.gene58434.t1	MTR_6g012180	35.533	197	108	7	11	205	130	309	2.71e-20	87.4
MS.gene58434.t1	MTR_7g010210	31.718	227	107	10	1	206	116	315	3.71e-16	76.3
MS.gene58434.t1	MTR_7g010210	40.678	118	43	4	1	105	116	219	9.07e-14	68.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58434.t1	AT1G74650	33.503	197	98	7	23	211	75	246	3.22e-16	75.5
MS.gene58434.t1	AT1G74650	33.503	197	98	7	23	211	80	251	5.18e-16	74.7
MS.gene58434.t1	AT1G74650	33.503	197	98	7	23	211	156	327	3.27e-15	73.6
MS.gene58434.t1	AT3G47600	35.176	199	97	10	23	212	147	322	5.60e-15	72.8
MS.gene58434.t1	AT3G47600	35.176	199	97	10	23	212	153	328	6.95e-15	72.8
MS.gene58434.t1	AT3G28910	30.366	191	87	5	23	197	73	233	7.50e-14	68.9
MS.gene58434.t1	AT3G28910	30.366	191	87	5	23	197	149	309	2.13e-13	68.2
MS.gene58434.t1	AT5G62470	32.751	229	98	11	23	217	146	352	2.42e-13	68.2
MS.gene58434.t1	AT5G62470	32.751	229	98	11	23	217	145	351	3.09e-13	68.2

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Find 45 sgRNAs with CRISPR-Local

Find 54 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGGACAAAGCCTCAGATA+AGG	0.576279	8.3:-15968757	None:intergenic
AATCAGATTTGGTTGAGTTA+AGG	0.409124	8.3:-15969040	None:intergenic
ACATGTTTATAAGCTCTTCA+TGG	0.378049	8.3:-15969241	None:intergenic
AGCACAACACAAGATCATCA+TGG	0.642061	8.3:+15969017	MS.gene58434:CDS
AGCCTCAGATAAGGCTTGTT+TGG	0.361155	8.3:-15968748	None:intergenic
AGCTGCCGTATAAAGGTCAA+TGG	0.472504	8.3:+15968694	MS.gene58434:CDS
ATAAAGGTCAATGGGAAAGA+AGG	0.529786	8.3:+15968703	MS.gene58434:CDS
ATCGATATTCAGCAACATGC+AGG	0.473325	8.3:+15968968	MS.gene58434:CDS
CAACATAACCCTACAACCCT+TGG	0.522290	8.3:+15968780	MS.gene58434:CDS
CAGGGATCAAGTTGTAGTGA+AGG	0.587215	8.3:+15968987	MS.gene58434:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATGTTTATAAGCTCTTCA+TGG	-	chr8.3:15969244-15969263	None:intergenic	30.0%
AGAAAGAGAAAAACTTGATG+AGG	-	chr8.3:15968829-15968848	None:intergenic	30.0%
CTCTTACTTTGCTTGAAAAA+TGG	+	chr8.3:15969186-15969205	MS.gene58434:CDS	30.0%
GAAAGAGAAAAACTTGATGA+GGG	-	chr8.3:15968828-15968847	None:intergenic	30.0%
GCTACAAACAGATATTCATA+TGG	+	chr8.3:15968725-15968744	MS.gene58434:CDS	30.0%
GCTTATAAACATGTCATTAG+AGG	+	chr8.3:15969250-15969269	MS.gene58434:CDS	30.0%
TTCAACTTGAACACAAAAGA+GGG	+	chr8.3:15969104-15969123	MS.gene58434:CDS	30.0%
TTTCTAGATTGATGGAAACT+TGG	+	chr8.3:15968907-15968926	MS.gene58434:CDS	30.0%
ATAAAGGTCAATGGGAAAGA+AGG	+	chr8.3:15968703-15968722	MS.gene58434:CDS	35.0%
CATATGGAGATGGAATATTC+AGG	-	chr8.3:15968869-15968888	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	15968639	15969295	15968639	ID=MS.gene58434
chr8.3	mRNA	15968639	15969295	15968639	ID=MS.gene58434.t1;Parent=MS.gene58434
chr8.3	exon	15968639	15969295	15968639	ID=MS.gene58434.t1.exon1;Parent=MS.gene58434.t1
chr8.3	CDS	15968639	15969295	15968639	ID=cds.MS.gene58434.t1;Parent=MS.gene58434.t1

Gene Sequence

>MS.gene58434

ATGAACAAAGATCAAAGTAGTAACGATGAAGGTGTTGATCAAGAATCTCGTTCGCAGCTGCCGTATAAAGGTCAATGGGAAAGAAGGCTACAAACAGATATTCATATGGCCAAACAAGCCTTATCTGAGGCTTTGTCCCTTCAACATAACCCTACAACCCTTGGTACTTTGCCTGATCAGATGAAACCCTCATCAAGTTTTTCTCTTTCTCATGAACATCCACCAAACCTGAATATTCCATCTCCATATGCATCAAGCTATGAAAACATTTCTAGATTGATGGAAACTTGGATGAAATCACCTAACTCATCAGCTGAAACAAATTCCTCATCGATATTCAGCAACATGCAGGGATCAAGTTGTAGTGAAGGAGCACAAAGCACAACACAAGATCATCATGGCCTTAACTCAACCAAATCTGATTATGCATCTCGATTTAGGTCAACTCATGAAGGAAACAACAGCTTCAACTTGAACACAAAAGAGGGTCTCTTCTTCCACCAAGAGGAAAGGATTAATATTAAAGCAAATATGGAAACGGATGTTCCTCTTACTTTGCTTGAAAAATGGCTTTTTGAAGATGGGGGAGCAAGTCATGAGTGCCATGAAGAGCTTATAAACATGTCATTAGAGGGAACTACTTCAGATTTCTTTTAG

Protein sequence

>MS.gene58434.t1

MNKDQSSNDEGVDQESRSQLPYKGQWERRLQTDIHMAKQALSEALSLQHNPTTLGTLPDQMKPSSSFSLSHEHPPNLNIPSPYASSYENISRLMETWMKSPNSSAETNSSSIFSNMQGSSCSEGAQSTTQDHHGLNSTKSDYASRFRSTHEGNNSFNLNTKEGLFFHQEERINIKANMETDVPLTLLEKWLFEDGGASHECHEELINMSLEGTTSDFF