AlfalfaGEDB | MS.gene59053

M. sativa cultivar XinJiangDaYe / MS.gene59053

KEGG: -
GO: -
PFAM: PF00903.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59053.t1	XP_003609290.1	97.1	170	2	3	1	169	1	168	3.50E-87	330.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59053.t1	G7JCV5	97.1	170	2	3	1	169	1	168	2.5e-87	330.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene59053	-0.814054	1.87E-51	-1.69E-46
MS.gene049217	MS.gene59053	-0.826182	3.12E-54	-1.69E-46
MS.gene049222	MS.gene59053	-0.807504	4.89E-50	-1.69E-46
MS.gene049281	MS.gene59053	0.825778	3.89E-54	-1.69E-46
MS.gene049285	MS.gene59053	-0.817983	2.48E-52	-1.69E-46
MS.gene049627	MS.gene59053	-0.825887	3.67E-54	-1.69E-46
MS.gene05010	MS.gene59053	-0.800798	1.22E-48	-1.69E-46
MS.gene050163	MS.gene59053	-0.807205	5.66E-50	-1.69E-46
MS.gene050165	MS.gene59053	-0.806589	7.64E-50	-1.69E-46
MS.gene050381	MS.gene59053	0.835803	1.36E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59053.t1	MTR_4g114080	97.059	170	2	3	1	169	1	168	4.72e-117	328
MS.gene59053.t1	MTR_4g011020	66.026	156	51	2	1	156	5	158	2.31e-76	226
MS.gene59053.t1	MTR_2g103490	60.947	169	61	4	1	168	5	169	3.42e-67	202
MS.gene59053.t1	MTR_2g103460	57.738	168	66	4	1	167	5	168	1.90e-62	190
MS.gene59053.t1	MTR_2g005880	60.432	139	53	1	4	142	2	138	2.43e-57	177
MS.gene59053.t1	MTR_5g021610	57.534	146	60	1	2	145	22	167	1.23e-56	177
MS.gene59053.t1	MTR_8g076160	55.556	144	62	1	4	145	12	155	7.83e-55	172
MS.gene59053.t1	MTR_0003s0630	52.143	140	65	2	3	140	32	171	3.28e-50	160
MS.gene59053.t1	MTR_1g115170	54.730	148	62	4	20	166	1	144	2.03e-49	156

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59053.t1	AT1G80160	63.804	163	57	2	2	164	6	166	2.35e-73	218
MS.gene59053.t1	AT1G80160	63.804	163	57	2	2	164	47	207	8.78e-73	218
MS.gene59053.t1	AT1G15380	62.130	169	59	4	2	167	6	172	5.90e-71	212
MS.gene59053.t1	AT1G15380	62.130	169	59	4	2	167	6	172	5.90e-71	212
MS.gene59053.t1	AT2G28420	51.852	135	63	2	7	140	18	151	2.73e-51	162
MS.gene59053.t1	AT1G80160	62.069	116	42	2	49	164	27	140	4.48e-45	145

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Find 29 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAATATGGTTGTCCTT+TGG	0.368432	8.4:-13869918	None:intergenic
AAGAACAGAGTAGAGGAAAA+TGG	0.294782	8.4:+13870094	MS.gene59053:CDS
AAGGAGGTAGGTCTCTTAAT+AGG	0.373287	8.4:-13869680	None:intergenic
AGGTTGTTTAATTATGGCAT+TGG	0.497038	8.4:+13869831	MS.gene59053:intron
ATCATTGAATCACATCTCAT+TGG	0.477448	8.4:+13869601	MS.gene59053:CDS
ATTAATGTGCACATTATTCT+TGG	0.304684	8.4:-13869895	None:intergenic
ATTCAATGATTTGAGTTGTA+GGG	0.480431	8.4:-13869588	None:intergenic
ATTTCAATCATAGTGCCATC+TGG	0.481430	8.4:-13870148	None:intergenic
CAAATTGTGTTCTCTGATAA+AGG	0.332337	8.4:-13870199	None:intergenic
CCATGCACCATTGAAGGCTA+AGG	0.575830	8.4:-13869699	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAATATGGTTGTCCTT+TGG	-	chr8.4:13869921-13869940	None:intergenic	30.0%
AGGTTGTTTAATTATGGCAT+TGG	+	chr8.4:13869831-13869850	MS.gene59053:intron	30.0%
ATCATTGAATCACATCTCAT+TGG	+	chr8.4:13869601-13869620	MS.gene59053:CDS	30.0%
CAAATTGTGTTCTCTGATAA+AGG	-	chr8.4:13870202-13870221	None:intergenic	30.0%
CTTTATCAGAGAACACAATT+TGG	+	chr8.4:13870200-13870219	MS.gene59053:CDS	30.0%
TAATGTGCACATTAATCCAA+AGG	+	chr8.4:13869902-13869921	MS.gene59053:CDS	30.0%
TTATTCTTGGTCATACTTTC+TGG	-	chr8.4:13869885-13869904	None:intergenic	30.0%
AAGAACAGAGTAGAGGAAAA+TGG	+	chr8.4:13870094-13870113	MS.gene59053:CDS	35.0%
ATTTCAATCATAGTGCCATC+TGG	-	chr8.4:13870151-13870170	None:intergenic	35.0%
TTTCTGGATCATCATCTGAT+TGG	-	chr8.4:13869869-13869888	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	13869578	13870291	13869578	ID=MS.gene59053
chr8.4	mRNA	13869578	13870291	13869578	ID=MS.gene59053.t1;Parent=MS.gene59053
chr8.4	exon	13869578	13869720	13869578	ID=MS.gene59053.t1.exon1;Parent=MS.gene59053.t1
chr8.4	CDS	13869578	13869720	13869578	ID=cds.MS.gene59053.t1;Parent=MS.gene59053.t1
chr8.4	exon	13869833	13869944	13869833	ID=MS.gene59053.t1.exon2;Parent=MS.gene59053.t1
chr8.4	CDS	13869833	13869944	13869833	ID=cds.MS.gene59053.t1;Parent=MS.gene59053.t1
chr8.4	exon	13870037	13870291	13870037	ID=MS.gene59053.t1.exon3;Parent=MS.gene59053.t1
chr8.4	CDS	13870037	13870291	13870037	ID=cds.MS.gene59053.t1;Parent=MS.gene59053.t1

Gene Sequence

>MS.gene59053

ATGGGCAATCCCCTACAACTCAAATCATTGAATCACATCTCATTGGTGTGTAGATCATTAGACAAGTCAGTTGATTTTTACGTCAATGTTCTTGGCTTCTTTCCTATTAAGAGACCTACCTCCTTAGCCTTCAATGGTGCATGGTACGTATATTTAATCATTTTATGATACACTTTTGTAAATATTATTAAGTTGATGAATCATATTTGTTTCCATTGTTAGAATAACTTATGTTTACATTTTTGGTTTGATTAGGTTGTTTAATTATGGCATTGGCATACATCTTCTCCAATCAGATGATGATCCAGAAAGTATGACCAAGAATAATGTGCACATTAATCCAAAGGACAACCATATTTCTTTCCAAGTATATCTCTCTCCCTCTATTTGTGTAAATTATTTCAACTTTAAAAGCATATGTGCCTATATACTTATTATGTGATTTCGCATCGTTGCTAGTGTGAAAGTATGGCAGTAGTGGAGAATAAACTGCAGCAAATGAAGATAGAGTATGTGAAGAACAGAGTAGAGGAAAATGGAATCTACGTTGATCAGTTGTTCTTCCATGATCCAGATGGCACTATGATTGAAATCTGCAATTGTGACAATATTCCAATTGTACCTTTATCAGAGAACACAATTTGGTCATGCTCGCGCTTCAACTGCAATATTCAAAATCAGCAGCAGCAAATTCAACAAATGATCTCAATGTAG

Protein sequence

>MS.gene59053.t1

MGNPLQLKSLNHISLVCRSLDKSVDFYVNVLGFFPIKRPTSLAFNGAWLFNYGIGIHLLQSDDDPESMTKNNVHINPKDNHISFQCESMAVVENKLQQMKIEYVKNRVEENGIYVDQLFFHDPDGTMIEICNCDNIPIVPLSENTIWSCSRFNCNIQNQQQQIQQMISM