Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59396.t1 | CAA41106.1 | 99.7 | 318 | 1 | 0 | 1 | 318 | 1 | 318 | 8.20E-178 | 632.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59396.t1 | P52575 | 98.7 | 318 | 4 | 0 | 1 | 318 | 1 | 318 | 4.8e-179 | 628.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59396.t1 | G7KEZ1 | 98.4 | 318 | 5 | 0 | 1 | 318 | 1 | 318 | 3.2e-176 | 627.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049634 | MS.gene59396 | 0.802926 | 4.45E-49 | -1.69E-46 |
| MS.gene050380 | MS.gene59396 | 0.842009 | 3.36E-58 | -1.69E-46 |
| MS.gene050381 | MS.gene59396 | 0.876382 | 1.46E-68 | -1.69E-46 |
| MS.gene050883 | MS.gene59396 | 0.806181 | 9.32E-50 | -1.69E-46 |
| MS.gene051127 | MS.gene59396 | 0.824814 | 6.58E-54 | -1.69E-46 |
| MS.gene051138 | MS.gene59396 | 0.80256 | 5.29E-49 | -1.69E-46 |
| MS.gene053406 | MS.gene59396 | 0.811271 | 7.61E-51 | -1.69E-46 |
| MS.gene053420 | MS.gene59396 | 0.830967 | 2.18E-55 | -1.69E-46 |
| MS.gene053488 | MS.gene59396 | 0.812261 | 4.63E-51 | -1.69E-46 |
| MS.gene053561 | MS.gene59396 | 0.816242 | 6.12E-52 | -1.69E-46 |
| MS.gene054708 | MS.gene59396 | 0.819541 | 1.10E-52 | -1.69E-46 |
| MS.gene055124 | MS.gene59396 | 0.892082 | 2.20E-74 | -1.69E-46 |
| MS.gene055154 | MS.gene59396 | 0.847788 | 9.26E-60 | -1.69E-46 |
| MS.gene055202 | MS.gene59396 | 0.830899 | 2.27E-55 | -1.69E-46 |
| MS.gene055959 | MS.gene59396 | 0.856975 | 2.24E-62 | -1.69E-46 |
| MS.gene056310 | MS.gene59396 | 0.838149 | 3.41E-57 | -1.69E-46 |
| MS.gene056311 | MS.gene59396 | 0.812178 | 4.83E-51 | -1.69E-46 |
| MS.gene056313 | MS.gene59396 | 0.869375 | 3.25E-66 | -1.69E-46 |
| MS.gene058068 | MS.gene59396 | 0.808768 | 2.63E-50 | -1.69E-46 |
| MS.gene058093 | MS.gene59396 | 0.841264 | 5.28E-58 | -1.69E-46 |
| MS.gene058099 | MS.gene59396 | 0.849065 | 4.11E-60 | -1.69E-46 |
| MS.gene058108 | MS.gene59396 | 0.843204 | 1.62E-58 | -1.69E-46 |
| MS.gene058109 | MS.gene59396 | 0.848057 | 7.81E-60 | -1.69E-46 |
| MS.gene058170 | MS.gene59396 | 0.806211 | 9.18E-50 | -1.69E-46 |
| MS.gene058171 | MS.gene59396 | 0.869426 | 3.12E-66 | -1.69E-46 |
| MS.gene058173 | MS.gene59396 | 0.860992 | 1.40E-63 | -1.69E-46 |
| MS.gene058174 | MS.gene59396 | 0.809564 | 1.78E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene59396 | 0.864693 | 1.01E-64 | -1.69E-46 |
| MS.gene058176 | MS.gene59396 | 0.847811 | 9.13E-60 | -1.69E-46 |
| MS.gene058179 | MS.gene59396 | 0.86997 | 2.08E-66 | -1.69E-46 |
| MS.gene058180 | MS.gene59396 | 0.851173 | 1.05E-60 | -1.69E-46 |
| MS.gene058840 | MS.gene59396 | 0.838167 | 3.38E-57 | -1.69E-46 |
| MS.gene059037 | MS.gene59396 | 0.902309 | 1.11E-78 | -1.69E-46 |
| MS.gene059038 | MS.gene59396 | 0.882533 | 9.62E-71 | -1.69E-46 |
| MS.gene059044 | MS.gene59396 | 0.860962 | 1.43E-63 | -1.69E-46 |
| MS.gene059045 | MS.gene59396 | 0.852611 | 4.12E-61 | -1.69E-46 |
| MS.gene059223 | MS.gene59396 | 0.807435 | 5.06E-50 | -1.69E-46 |
| MS.gene059697 | MS.gene59396 | 0.816824 | 4.53E-52 | -1.69E-46 |
| MS.gene059944 | MS.gene59396 | 0.810423 | 1.16E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59396.t1 | MTR_5g020800 | 98.428 | 318 | 5 | 0 | 1 | 318 | 1 | 318 | 0.0 | 642 |
| MS.gene59396.t1 | MTR_5g020760 | 98.113 | 318 | 6 | 0 | 1 | 318 | 1 | 318 | 0.0 | 640 |
| MS.gene59396.t1 | MTR_5g020760 | 98.106 | 264 | 5 | 0 | 1 | 264 | 1 | 264 | 0.0 | 530 |
| MS.gene59396.t1 | MTR_5g020740 | 59.119 | 318 | 118 | 3 | 2 | 318 | 3 | 309 | 1.93e-133 | 382 |
| MS.gene59396.t1 | MTR_3g111980 | 57.944 | 321 | 121 | 4 | 1 | 318 | 1 | 310 | 1.45e-123 | 357 |
| MS.gene59396.t1 | MTR_3g111990 | 55.799 | 319 | 129 | 3 | 1 | 318 | 1 | 308 | 1.85e-121 | 351 |
| MS.gene59396.t1 | MTR_3g116840 | 54.603 | 315 | 131 | 3 | 5 | 318 | 9 | 312 | 1.13e-116 | 339 |
| MS.gene59396.t1 | MTR_4g070370 | 49.196 | 311 | 146 | 3 | 7 | 316 | 10 | 309 | 1.42e-103 | 306 |
| MS.gene59396.t1 | MTR_4g070340 | 49.038 | 312 | 147 | 3 | 6 | 316 | 8 | 308 | 2.05e-98 | 293 |
| MS.gene59396.t1 | MTR_4g070340 | 48.077 | 312 | 145 | 4 | 6 | 316 | 8 | 303 | 4.18e-93 | 280 |
| MS.gene59396.t1 | MTR_4g070340 | 50.201 | 249 | 123 | 1 | 69 | 316 | 11 | 259 | 5.10e-82 | 250 |
| MS.gene59396.t1 | MTR_4g070360 | 39.623 | 318 | 178 | 3 | 4 | 318 | 3 | 309 | 8.96e-80 | 245 |
| MS.gene59396.t1 | MTR_5g027290 | 41.121 | 321 | 169 | 5 | 4 | 317 | 3 | 310 | 2.34e-78 | 241 |
| MS.gene59396.t1 | MTR_5g027240 | 41.745 | 321 | 167 | 5 | 4 | 317 | 3 | 310 | 1.68e-77 | 239 |
| MS.gene59396.t1 | MTR_8g071130 | 39.815 | 324 | 172 | 8 | 4 | 318 | 3 | 312 | 2.87e-72 | 226 |
| MS.gene59396.t1 | MTR_3g008140 | 38.486 | 317 | 180 | 4 | 2 | 318 | 3 | 304 | 9.63e-72 | 224 |
| MS.gene59396.t1 | MTR_3g007970 | 38.438 | 320 | 177 | 6 | 2 | 318 | 3 | 305 | 1.24e-70 | 222 |
| MS.gene59396.t1 | MTR_3g008100 | 38.318 | 321 | 176 | 6 | 2 | 318 | 3 | 305 | 2.33e-69 | 219 |
| MS.gene59396.t1 | MTR_3g008100 | 37.695 | 321 | 171 | 6 | 2 | 318 | 3 | 298 | 1.75e-65 | 208 |
| MS.gene59396.t1 | MTR_1g093720 | 35.110 | 319 | 192 | 4 | 3 | 318 | 12 | 318 | 6.95e-65 | 208 |
| MS.gene59396.t1 | MTR_3g008100 | 37.688 | 199 | 104 | 4 | 2 | 197 | 3 | 184 | 3.12e-37 | 133 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59396.t1 | AT1G75290 | 52.648 | 321 | 137 | 5 | 1 | 317 | 1 | 310 | 4.33e-114 | 333 |
| MS.gene59396.t1 | AT1G75280 | 53.125 | 320 | 136 | 4 | 1 | 317 | 1 | 309 | 5.58e-114 | 332 |
| MS.gene59396.t1 | AT4G39230 | 52.978 | 319 | 138 | 3 | 1 | 318 | 1 | 308 | 6.01e-114 | 332 |
| MS.gene59396.t1 | AT1G75290 | 52.648 | 321 | 137 | 5 | 1 | 317 | 28 | 337 | 1.65e-113 | 332 |
| MS.gene59396.t1 | AT1G75300 | 49.254 | 335 | 138 | 6 | 1 | 317 | 1 | 321 | 1.20e-102 | 304 |
| MS.gene59396.t1 | AT1G19540 | 48.589 | 319 | 148 | 5 | 5 | 318 | 3 | 310 | 1.61e-97 | 290 |
| MS.gene59396.t1 | AT4G34540 | 37.342 | 316 | 181 | 2 | 4 | 318 | 7 | 306 | 5.89e-79 | 243 |
| MS.gene59396.t1 | AT1G19540 | 49.242 | 264 | 119 | 4 | 5 | 264 | 3 | 255 | 1.29e-77 | 238 |
| MS.gene59396.t1 | AT1G32100 | 39.441 | 322 | 175 | 5 | 4 | 318 | 9 | 317 | 2.40e-75 | 234 |
| MS.gene59396.t1 | AT4G13660 | 40.373 | 322 | 172 | 5 | 4 | 318 | 9 | 317 | 1.94e-74 | 232 |
| MS.gene59396.t1 | AT4G13660 | 40.373 | 322 | 172 | 5 | 4 | 318 | 9 | 317 | 1.94e-74 | 232 |
Find 66 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCGACAAAGTTGTCATTCT+TGG | 0.166136 | 5.4:+12705835 | MS.gene59396:CDS |
| ATAAGCTCTTCCTTGGTTTC+AGG | 0.170156 | 5.4:-12705219 | None:intergenic |
| AAAGAGCAATGACCTCATTT+TGG | 0.212124 | 5.4:-12706076 | None:intergenic |
| ATTGATAATTACCAATCTTT+AGG | 0.253564 | 5.4:+12705240 | MS.gene59396:CDS |
| TTCAGAAGCTTCAATATCTT+TGG | 0.254251 | 5.4:-12706489 | None:intergenic |
| CTTTGTTGCCACGCCTTTAC+CGG | 0.290435 | 5.4:+12705766 | MS.gene59396:CDS |
| TACCATTCACAACAAATAAA+AGG | 0.300864 | 5.4:+12706440 | MS.gene59396:CDS |
| AAATGAGGTCATTGCTCTTT+GGG | 0.309923 | 5.4:+12706079 | MS.gene59396:CDS |
| AAAATGAGGTCATTGCTCTT+TGG | 0.317132 | 5.4:+12706078 | MS.gene59396:CDS |
| CTTACGTAACTTGGCTCAAC+TGG | 0.353778 | 5.4:+12705795 | MS.gene59396:CDS |
| CTATTGGAAGACACATAGTT+TGG | 0.363124 | 5.4:+12705106 | MS.gene59396:CDS |
| GGGATCATTTGCTGCTCTAA+TGG | 0.371239 | 5.4:-12706003 | None:intergenic |
| ATTCCCTCATAACTATTTGT+TGG | 0.383223 | 5.4:+12706412 | MS.gene59396:CDS |
| TTAGCAGCTGTAATAAGCTT+TGG | 0.390009 | 5.4:-12705195 | None:intergenic |
| CTAGGACCAACAGGAGCTAT+TGG | 0.396755 | 5.4:+12705090 | MS.gene59396:CDS |
| CGGTTACTTCTTACGTAACT+TGG | 0.420584 | 5.4:+12705786 | MS.gene59396:CDS |
| AGGAAATCCAACATATGCTT+TGG | 0.425743 | 5.4:+12705143 | MS.gene59396:CDS |
| ATCCTCATCCTAGGACCAAC+AGG | 0.432495 | 5.4:+12705081 | MS.gene59396:CDS |
| ATTAAAGCAATTAAAGAAGC+TGG | 0.439051 | 5.4:+12705464 | MS.gene59396:CDS |
| TTTGGCTTGTTAACATTGCC+AGG | 0.439374 | 5.4:-12705177 | None:intergenic |
| AATGCCAACAAATAGTTATG+AGG | 0.443320 | 5.4:-12706416 | None:intergenic |
| GTAGAATAACTCCTAAAGAT+TGG | 0.448622 | 5.4:-12705251 | None:intergenic |
| ATTATCAATAAGCTCTTCCT+TGG | 0.453266 | 5.4:-12705226 | None:intergenic |
| CAATAGCTCCTGTTGGTCCT+AGG | 0.454369 | 5.4:-12705089 | None:intergenic |
| TGATCATGAAACTCTTGTTA+AGG | 0.455304 | 5.4:+12705373 | MS.gene59396:CDS |
| TTTCTAACCAAAGCATATGT+TGG | 0.458494 | 5.4:-12705150 | None:intergenic |
| GCAGTGGTGTATGTCACATC+TGG | 0.461849 | 5.4:-12706518 | None:intergenic |
| GAAGCTTCAATATCTTTGGC+TGG | 0.462307 | 5.4:-12706485 | None:intergenic |
| TAAAGAAGCTGGAAACGTTA+AGG | 0.465104 | 5.4:+12705475 | MS.gene59396:CDS |
| ACAGCTTTGTTCAATGTGTT+GGG | 0.466334 | 5.4:-12706023 | None:intergenic |
| CAAGTTACGTAAGAAGTAAC+CGG | 0.467564 | 5.4:-12705785 | None:intergenic |
| CTTCAGCCTCAATTACTCTT+CGG | 0.475704 | 5.4:-12705726 | None:intergenic |
| AAAGTTGTCATTCTTGGAGA+TGG | 0.476919 | 5.4:+12705841 | MS.gene59396:CDS |
| GACAGCTTTGTTCAATGTGT+TGG | 0.480648 | 5.4:-12706024 | None:intergenic |
| TATTGGAAGACACATAGTTT+GGG | 0.481038 | 5.4:+12705107 | MS.gene59396:CDS |
| TAGACTACTAATTGAGGATC+AGG | 0.481816 | 5.4:+12705433 | MS.gene59396:CDS |
| GAAAACAAAATCCTCATCCT+AGG | 0.488477 | 5.4:+12705072 | MS.gene59396:CDS |
| ACGTAAGAAGTAACCGGTAA+AGG | 0.493799 | 5.4:-12705779 | None:intergenic |
| GACATTGTGATCTGTGCTGC+TGG | 0.497025 | 5.4:+12705410 | MS.gene59396:CDS |
| AAATTATTTGACCCAAAATG+AGG | 0.510766 | 5.4:+12706064 | MS.gene59396:CDS |
| ATGTCACTGAAGCTGATGTT+GGG | 0.512985 | 5.4:+12705973 | MS.gene59396:CDS |
| CAAGTTCTCAAGGATATTCA+AGG | 0.519192 | 5.4:+12706149 | MS.gene59396:CDS |
| CGGTAAAGGCGTGGCAACAA+AGG | 0.521509 | 5.4:-12705765 | None:intergenic |
| TGAGAAAACTTATGTTTCAG+AGG | 0.523834 | 5.4:+12706124 | MS.gene59396:CDS |
| TATGTCACTGAAGCTGATGT+TGG | 0.526438 | 5.4:+12705972 | MS.gene59396:CDS |
| CTCCTGTTGGTCCTAGGATG+AGG | 0.526748 | 5.4:-12705083 | None:intergenic |
| AGCTGCTAATCCTGAAACCA+AGG | 0.544614 | 5.4:+12705209 | MS.gene59396:CDS |
| GTTTGGGCAAGTATTAAAGC+AGG | 0.544920 | 5.4:+12705123 | MS.gene59396:CDS |
| CTTGGAGATGGAAATGTGAA+AGG | 0.559099 | 5.4:+12705853 | MS.gene59396:CDS |
| ACGTCTAGCCCAAATTCAGA+TGG | 0.563905 | 5.4:-12705646 | None:intergenic |
| TGGCAACAAAGGTAAGTGTA+AGG | 0.564377 | 5.4:-12705754 | None:intergenic |
| TTCAGAGGAACAAGTTCTCA+AGG | 0.567380 | 5.4:+12706139 | MS.gene59396:CDS |
| TGTCTTCCAATAGCTCCTGT+TGG | 0.572016 | 5.4:-12705096 | None:intergenic |
| GGTGTATGTCACATCTGGAT+AGG | 0.574765 | 5.4:-12706513 | None:intergenic |
| ATGCCAACAAATAGTTATGA+GGG | 0.580723 | 5.4:-12706415 | None:intergenic |
| ATCTGAATTTGGGCTAGACG+TGG | 0.583561 | 5.4:+12705648 | MS.gene59396:CDS |
| TGCTGGTAGACTACTAATTG+AGG | 0.589907 | 5.4:+12705427 | MS.gene59396:CDS |
| CGAAGAGTAATTGAGGCTGA+AGG | 0.609640 | 5.4:+12705727 | MS.gene59396:CDS |
| AAGTATCCGAAGAGTAATTG+AGG | 0.611899 | 5.4:+12705720 | MS.gene59396:CDS |
| ATTCAAATATTCATCAGCAG+TGG | 0.611923 | 5.4:-12706534 | None:intergenic |
| CGTCTAGCCCAAATTCAGAT+GGG | 0.623219 | 5.4:-12705645 | None:intergenic |
| AGAATGACAACTTTGTCGCA+AGG | 0.628506 | 5.4:-12705832 | None:intergenic |
| AGAAGTAACCGGTAAAGGCG+TGG | 0.632726 | 5.4:-12705774 | None:intergenic |
| CTGGCTCAACTGCATCGTGA+CGG | 0.650507 | 5.4:-12705672 | None:intergenic |
| TTTGTCGCAAGGAGGATCAG+TGG | 0.659283 | 5.4:-12705821 | None:intergenic |
| ATGACAACTTTGTCGCAAGG+AGG | 0.704900 | 5.4:-12705829 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTATTTGAACTTATTTAC+TGG | - | chr5.4:12705525-12705544 | None:intergenic | 20.0% |
| !!! | ATTGATAATTACCAATCTTT+AGG | + | chr5.4:12705240-12705259 | MS.gene59396:CDS | 20.0% |
| !!! | ATTGTTAAGAATTTTTACAC+CGG | + | chr5.4:12706197-12706216 | MS.gene59396:intron | 20.0% |
| !!! | ATTTTGGGTCAAATAATTTT+TGG | - | chr5.4:12706063-12706082 | None:intergenic | 20.0% |
| !!! | TTTTGGGTCAAATAATTTTT+GGG | - | chr5.4:12706062-12706081 | None:intergenic | 20.0% |
| ! | AAATTATTTGACCCAAAATG+AGG | + | chr5.4:12706064-12706083 | MS.gene59396:CDS | 25.0% |
| ! | AAGCCGTATAAATTATTTGA+CGG | + | chr5.4:12706279-12706298 | MS.gene59396:intron | 25.0% |
| ! | ACACCGTCAAATAATTTATA+CGG | - | chr5.4:12706285-12706304 | None:intergenic | 25.0% |
| ! | ATTAAAGCAATTAAAGAAGC+TGG | + | chr5.4:12705464-12705483 | MS.gene59396:CDS | 25.0% |
| ! | TACCATTCACAACAAATAAA+AGG | + | chr5.4:12706440-12706459 | MS.gene59396:CDS | 25.0% |
| ! | TATCAACAATGATTGATTAC+CGG | - | chr5.4:12706219-12706238 | None:intergenic | 25.0% |
| !! | AAATTTTTCCCATCTGAATT+TGG | + | chr5.4:12705637-12705656 | MS.gene59396:CDS | 25.0% |
| !! | AATTTTTCCCATCTGAATTT+GGG | + | chr5.4:12705638-12705657 | MS.gene59396:CDS | 25.0% |
| !! | TTTGGGTCAAATAATTTTTG+GGG | - | chr5.4:12706061-12706080 | None:intergenic | 25.0% |
| AATGCCAACAAATAGTTATG+AGG | - | chr5.4:12706419-12706438 | None:intergenic | 30.0% | |
| ATAAGCTCCTGTGAAAATTA+AGG | - | chr5.4:12705955-12705974 | None:intergenic | 30.0% | |
| ATGCCAACAAATAGTTATGA+GGG | - | chr5.4:12706418-12706437 | None:intergenic | 30.0% | |
| ATTATCAATAAGCTCTTCCT+TGG | - | chr5.4:12705229-12705248 | None:intergenic | 30.0% | |
| ATTCAAATATTCATCAGCAG+TGG | - | chr5.4:12706537-12706556 | None:intergenic | 30.0% | |
| ATTCCCTCATAACTATTTGT+TGG | + | chr5.4:12706412-12706431 | MS.gene59396:CDS | 30.0% | |
| CTTAGTAATAACTCCTTTGA+TGG | + | chr5.4:12705560-12705579 | MS.gene59396:intron | 30.0% | |
| GTAGAATAACTCCTAAAGAT+TGG | - | chr5.4:12705254-12705273 | None:intergenic | 30.0% | |
| GTTATTACTAAGAGTCTATC+TGG | - | chr5.4:12705552-12705571 | None:intergenic | 30.0% | |
| TATTGGAAGACACATAGTTT+GGG | + | chr5.4:12705107-12705126 | MS.gene59396:CDS | 30.0% | |
| TCTTCAAAAACTTGTCTAAC+TGG | - | chr5.4:12705694-12705713 | None:intergenic | 30.0% | |
| TGAGAAAACTTATGTTTCAG+AGG | + | chr5.4:12706124-12706143 | MS.gene59396:CDS | 30.0% | |
| TGATCATGAAACTCTTGTTA+AGG | + | chr5.4:12705373-12705392 | MS.gene59396:CDS | 30.0% | |
| TTCAGAAGCTTCAATATCTT+TGG | - | chr5.4:12706492-12706511 | None:intergenic | 30.0% | |
| TTTCTAACCAAAGCATATGT+TGG | - | chr5.4:12705153-12705172 | None:intergenic | 30.0% | |
| ! | ACATTTGCCTTAATTTTCAC+AGG | + | chr5.4:12705945-12705964 | MS.gene59396:intron | 30.0% |
| ! | GAGTCAAAGACATATTGATT+AGG | - | chr5.4:12705337-12705356 | None:intergenic | 30.0% |
| !! | AATTTTTGGGGAGTCTAATA+TGG | - | chr5.4:12706049-12706068 | None:intergenic | 30.0% |
| !!! | CTCCTTTTATTTGTTGTGAA+TGG | - | chr5.4:12706445-12706464 | None:intergenic | 30.0% |
| AAAATGAGGTCATTGCTCTT+TGG | + | chr5.4:12706078-12706097 | MS.gene59396:CDS | 35.0% | |
| AAAGTTGTCATTCTTGGAGA+TGG | + | chr5.4:12705841-12705860 | MS.gene59396:CDS | 35.0% | |
| AAATGAGGTCATTGCTCTTT+GGG | + | chr5.4:12706079-12706098 | MS.gene59396:CDS | 35.0% | |
| AAGTATCCGAAGAGTAATTG+AGG | + | chr5.4:12705720-12705739 | MS.gene59396:CDS | 35.0% | |
| AATATGTCTTTGACTCTGCA+GGG | + | chr5.4:12705341-12705360 | MS.gene59396:intron | 35.0% | |
| AGCACAAATCTAACCATCAA+AGG | - | chr5.4:12705576-12705595 | None:intergenic | 35.0% | |
| AGGAAATCCAACATATGCTT+TGG | + | chr5.4:12705143-12705162 | MS.gene59396:CDS | 35.0% | |
| CAAGTTACGTAAGAAGTAAC+CGG | - | chr5.4:12705788-12705807 | None:intergenic | 35.0% | |
| CAAGTTCTCAAGGATATTCA+AGG | + | chr5.4:12706149-12706168 | MS.gene59396:CDS | 35.0% | |
| CTAGTACTAAAACTGTTGTG+TGG | - | chr5.4:12705891-12705910 | None:intergenic | 35.0% | |
| CTATTGGAAGACACATAGTT+TGG | + | chr5.4:12705106-12705125 | MS.gene59396:CDS | 35.0% | |
| GAAAACAAAATCCTCATCCT+AGG | + | chr5.4:12705072-12705091 | MS.gene59396:CDS | 35.0% | |
| TAAAGAAGCTGGAAACGTTA+AGG | + | chr5.4:12705475-12705494 | MS.gene59396:CDS | 35.0% | |
| TAGACTACTAATTGAGGATC+AGG | + | chr5.4:12705433-12705452 | MS.gene59396:CDS | 35.0% | |
| TTAGCAGCTGTAATAAGCTT+TGG | - | chr5.4:12705198-12705217 | None:intergenic | 35.0% | |
| ! | AAAGAGCAATGACCTCATTT+TGG | - | chr5.4:12706079-12706098 | None:intergenic | 35.0% |
| ! | AAGAGCAATGACCTCATTTT+GGG | - | chr5.4:12706078-12706097 | None:intergenic | 35.0% |
| ! | CTCTTTGGGAGAAAAAGATT+GGG | + | chr5.4:12706093-12706112 | MS.gene59396:CDS | 35.0% |
| !! | ACAGCTTTGTTCAATGTGTT+GGG | - | chr5.4:12706026-12706045 | None:intergenic | 35.0% |
| ACGTAAGAAGTAACCGGTAA+AGG | - | chr5.4:12705782-12705801 | None:intergenic | 40.0% | |
| AGAATGACAACTTTGTCGCA+AGG | - | chr5.4:12705835-12705854 | None:intergenic | 40.0% | |
| ATAAGCTCTTCCTTGGTTTC+AGG | - | chr5.4:12705222-12705241 | None:intergenic | 40.0% | |
| ATGTCACTGAAGCTGATGTT+GGG | + | chr5.4:12705973-12705992 | MS.gene59396:CDS | 40.0% | |
| CAATATGTCTTTGACTCTGC+AGG | + | chr5.4:12705340-12705359 | MS.gene59396:intron | 40.0% | |
| CGGTTACTTCTTACGTAACT+TGG | + | chr5.4:12705786-12705805 | MS.gene59396:CDS | 40.0% | |
| CTTCAGCCTCAATTACTCTT+CGG | - | chr5.4:12705729-12705748 | None:intergenic | 40.0% | |
| CTTGGAGATGGAAATGTGAA+AGG | + | chr5.4:12705853-12705872 | MS.gene59396:CDS | 40.0% | |
| GAAGCTTCAATATCTTTGGC+TGG | - | chr5.4:12706488-12706507 | None:intergenic | 40.0% | |
| GCTTTGGTTAGAAAAACACC+TGG | + | chr5.4:12705159-12705178 | MS.gene59396:CDS | 40.0% | |
| GTTTGGGCAAGTATTAAAGC+AGG | + | chr5.4:12705123-12705142 | MS.gene59396:CDS | 40.0% | |
| TATGTCACTGAAGCTGATGT+TGG | + | chr5.4:12705972-12705991 | MS.gene59396:CDS | 40.0% | |
| TGCGACAAAGTTGTCATTCT+TGG | + | chr5.4:12705835-12705854 | MS.gene59396:CDS | 40.0% | |
| TGCTGGTAGACTACTAATTG+AGG | + | chr5.4:12705427-12705446 | MS.gene59396:CDS | 40.0% | |
| TGGCAACAAAGGTAAGTGTA+AGG | - | chr5.4:12705757-12705776 | None:intergenic | 40.0% | |
| TTCAGAGGAACAAGTTCTCA+AGG | + | chr5.4:12706139-12706158 | MS.gene59396:CDS | 40.0% | |
| ! | GCTCTTTGGGAGAAAAAGAT+TGG | + | chr5.4:12706092-12706111 | MS.gene59396:CDS | 40.0% |
| !! | GACAGCTTTGTTCAATGTGT+TGG | - | chr5.4:12706027-12706046 | None:intergenic | 40.0% |
| !! | TTTGGCTTGTTAACATTGCC+AGG | - | chr5.4:12705180-12705199 | None:intergenic | 40.0% |
| ACGTCTAGCCCAAATTCAGA+TGG | - | chr5.4:12705649-12705668 | None:intergenic | 45.0% | |
| AGCTGCTAATCCTGAAACCA+AGG | + | chr5.4:12705209-12705228 | MS.gene59396:CDS | 45.0% | |
| ATGACAACTTTGTCGCAAGG+AGG | - | chr5.4:12705832-12705851 | None:intergenic | 45.0% | |
| CGAAGAGTAATTGAGGCTGA+AGG | + | chr5.4:12705727-12705746 | MS.gene59396:CDS | 45.0% | |
| CGTCTAGCCCAAATTCAGAT+GGG | - | chr5.4:12705648-12705667 | None:intergenic | 45.0% | |
| CTTACGTAACTTGGCTCAAC+TGG | + | chr5.4:12705795-12705814 | MS.gene59396:CDS | 45.0% | |
| GGTGTATGTCACATCTGGAT+AGG | - | chr5.4:12706516-12706535 | None:intergenic | 45.0% | |
| TGTCTTCCAATAGCTCCTGT+TGG | - | chr5.4:12705099-12705118 | None:intergenic | 45.0% | |
| ! | ATCTGAATTTGGGCTAGACG+TGG | + | chr5.4:12705648-12705667 | MS.gene59396:CDS | 45.0% |
| ! | GGGATCATTTGCTGCTCTAA+TGG | - | chr5.4:12706006-12706025 | None:intergenic | 45.0% |
| AGAAGTAACCGGTAAAGGCG+TGG | - | chr5.4:12705777-12705796 | None:intergenic | 50.0% | |
| ATCCTCATCCTAGGACCAAC+AGG | + | chr5.4:12705081-12705100 | MS.gene59396:CDS | 50.0% | |
| CAATAGCTCCTGTTGGTCCT+AGG | - | chr5.4:12705092-12705111 | None:intergenic | 50.0% | |
| CTAGGACCAACAGGAGCTAT+TGG | + | chr5.4:12705090-12705109 | MS.gene59396:CDS | 50.0% | |
| CTTTGTTGCCACGCCTTTAC+CGG | + | chr5.4:12705766-12705785 | MS.gene59396:CDS | 50.0% | |
| GACATTGTGATCTGTGCTGC+TGG | + | chr5.4:12705410-12705429 | MS.gene59396:CDS | 50.0% | |
| GCAGTGGTGTATGTCACATC+TGG | - | chr5.4:12706521-12706540 | None:intergenic | 50.0% | |
| TTTGTCGCAAGGAGGATCAG+TGG | - | chr5.4:12705824-12705843 | None:intergenic | 50.0% | |
| CTCCTGTTGGTCCTAGGATG+AGG | - | chr5.4:12705086-12705105 | None:intergenic | 55.0% | |
| CTGGCTCAACTGCATCGTGA+CGG | - | chr5.4:12705675-12705694 | None:intergenic | 55.0% | |
| ! | CGGTAAAGGCGTGGCAACAA+AGG | - | chr5.4:12705768-12705787 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 12705063 | 12706568 | 12705063 | ID=MS.gene59396 |
| chr5.4 | mRNA | 12705063 | 12706568 | 12705063 | ID=MS.gene59396.t1;Parent=MS.gene59396 |
| chr5.4 | exon | 12705063 | 12705278 | 12705063 | ID=MS.gene59396.t1.exon1;Parent=MS.gene59396.t1 |
| chr5.4 | CDS | 12705063 | 12705278 | 12705063 | ID=cds.MS.gene59396.t1;Parent=MS.gene59396.t1 |
| chr5.4 | exon | 12705362 | 12705496 | 12705362 | ID=MS.gene59396.t1.exon2;Parent=MS.gene59396.t1 |
| chr5.4 | CDS | 12705362 | 12705496 | 12705362 | ID=cds.MS.gene59396.t1;Parent=MS.gene59396.t1 |
| chr5.4 | exon | 12705637 | 12705874 | 12705637 | ID=MS.gene59396.t1.exon3;Parent=MS.gene59396.t1 |
| chr5.4 | CDS | 12705637 | 12705874 | 12705637 | ID=cds.MS.gene59396.t1;Parent=MS.gene59396.t1 |
| chr5.4 | exon | 12705967 | 12706170 | 12705967 | ID=MS.gene59396.t1.exon4;Parent=MS.gene59396.t1 |
| chr5.4 | CDS | 12705967 | 12706170 | 12705967 | ID=cds.MS.gene59396.t1;Parent=MS.gene59396.t1 |
| chr5.4 | exon | 12706405 | 12706568 | 12706405 | ID=MS.gene59396.t1.exon5;Parent=MS.gene59396.t1 |
| chr5.4 | CDS | 12706405 | 12706568 | 12706405 | ID=cds.MS.gene59396.t1;Parent=MS.gene59396.t1 |
| Gene Sequence |
| Protein sequence |
