Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59499.t1 | XP_003612215.2 | 99.1 | 794 | 5 | 1 | 1 | 792 | 1 | 794 | 0.00E+00 | 1536.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59499.t1 | Q7X659 | 75.5 | 792 | 189 | 2 | 1 | 792 | 1 | 787 | 0.0e+00 | 1198.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59499.t1 | G7JXK2 | 99.1 | 794 | 5 | 1 | 1 | 792 | 1 | 794 | 0.0e+00 | 1536.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene59499 | 0.828789 | 7.39E-55 | -1.69E-46 |
| MS.gene049744 | MS.gene59499 | 0.845641 | 3.58E-59 | -1.69E-46 |
| MS.gene049807 | MS.gene59499 | 0.823401 | 1.41E-53 | -1.69E-46 |
| MS.gene050084 | MS.gene59499 | 0.809297 | 2.03E-50 | -1.69E-46 |
| MS.gene050085 | MS.gene59499 | 0.826157 | 3.16E-54 | -1.69E-46 |
| MS.gene050213 | MS.gene59499 | 0.816459 | 5.47E-52 | -1.69E-46 |
| MS.gene050224 | MS.gene59499 | 0.81605 | 6.75E-52 | -1.69E-46 |
| MS.gene050257 | MS.gene59499 | 0.819341 | 1.22E-52 | -1.69E-46 |
| MS.gene050258 | MS.gene59499 | 0.807483 | 4.94E-50 | -1.69E-46 |
| MS.gene050348 | MS.gene59499 | 0.8019 | 7.24E-49 | -1.69E-46 |
| MS.gene050551 | MS.gene59499 | 0.836055 | 1.17E-56 | -1.69E-46 |
| MS.gene050556 | MS.gene59499 | 0.819924 | 8.99E-53 | -1.69E-46 |
| MS.gene050646 | MS.gene59499 | 0.828379 | 9.29E-55 | -1.69E-46 |
| MS.gene050654 | MS.gene59499 | 0.808923 | 2.44E-50 | -1.69E-46 |
| MS.gene050945 | MS.gene59499 | 0.813089 | 3.05E-51 | -1.69E-46 |
| MS.gene051102 | MS.gene59499 | 0.814483 | 1.51E-51 | -1.69E-46 |
| MS.gene051209 | MS.gene59499 | 0.810626 | 1.05E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene59499 | 0.829376 | 5.33E-55 | -1.69E-46 |
| MS.gene051381 | MS.gene59499 | 0.812888 | 3.38E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene59499 | 0.81406 | 1.87E-51 | -1.69E-46 |
| MS.gene052036 | MS.gene59499 | 0.811785 | 5.88E-51 | -1.69E-46 |
| MS.gene052072 | MS.gene59499 | 0.822692 | 2.07E-53 | -1.69E-46 |
| MS.gene052168 | MS.gene59499 | 0.806113 | 9.63E-50 | -1.69E-46 |
| MS.gene052242 | MS.gene59499 | -0.813886 | 2.04E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene59499 | 0.873287 | 1.65E-67 | -1.69E-46 |
| MS.gene052514 | MS.gene59499 | 0.802806 | 4.71E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene59499 | 0.925958 | 9.05E-91 | -1.69E-46 |
| MS.gene052681 | MS.gene59499 | 0.803778 | 2.96E-49 | -1.69E-46 |
| MS.gene052775 | MS.gene59499 | 0.822257 | 2.61E-53 | -1.69E-46 |
| MS.gene052776 | MS.gene59499 | 0.850064 | 2.16E-60 | -1.69E-46 |
| MS.gene053079 | MS.gene59499 | 0.83469 | 2.59E-56 | -1.69E-46 |
| MS.gene053143 | MS.gene59499 | 0.854576 | 1.12E-61 | -1.69E-46 |
| MS.gene05315 | MS.gene59499 | 0.809406 | 1.92E-50 | -1.69E-46 |
| MS.gene053486 | MS.gene59499 | 0.809273 | 2.05E-50 | -1.69E-46 |
| MS.gene053542 | MS.gene59499 | 0.801445 | 8.97E-49 | -1.69E-46 |
| MS.gene053620 | MS.gene59499 | 0.82356 | 1.30E-53 | -1.69E-46 |
| MS.gene054585 | MS.gene59499 | 0.808933 | 2.43E-50 | -1.69E-46 |
| MS.gene054709 | MS.gene59499 | 0.805042 | 1.62E-49 | -1.69E-46 |
| MS.gene054824 | MS.gene59499 | 0.853563 | 2.20E-61 | -1.69E-46 |
| MS.gene054892 | MS.gene59499 | 0.803755 | 3.00E-49 | -1.69E-46 |
| MS.gene054893 | MS.gene59499 | 0.803346 | 3.64E-49 | -1.69E-46 |
| MS.gene055313 | MS.gene59499 | 0.810482 | 1.13E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene59499 | 0.815275 | 1.00E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene59499 | 0.822262 | 2.60E-53 | -1.69E-46 |
| MS.gene056045 | MS.gene59499 | 0.815039 | 1.13E-51 | -1.69E-46 |
| MS.gene056181 | MS.gene59499 | 0.811534 | 6.67E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene59499 | 0.826159 | 3.16E-54 | -1.69E-46 |
| MS.gene056507 | MS.gene59499 | 0.868867 | 4.75E-66 | -1.69E-46 |
| MS.gene056519 | MS.gene59499 | 0.843631 | 1.24E-58 | -1.69E-46 |
| MS.gene056622 | MS.gene59499 | 0.817966 | 2.51E-52 | -1.69E-46 |
| MS.gene056699 | MS.gene59499 | 0.812832 | 3.48E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene59499 | 0.801371 | 9.29E-49 | -1.69E-46 |
| MS.gene056973 | MS.gene59499 | 0.820311 | 7.34E-53 | -1.69E-46 |
| MS.gene057034 | MS.gene59499 | 0.811201 | 7.88E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene59499 | 0.804416 | 2.18E-49 | -1.69E-46 |
| MS.gene057174 | MS.gene59499 | 0.801471 | 8.87E-49 | -1.69E-46 |
| MS.gene057360 | MS.gene59499 | 0.802955 | 4.39E-49 | -1.69E-46 |
| MS.gene057919 | MS.gene59499 | 0.814869 | 1.24E-51 | -1.69E-46 |
| MS.gene058289 | MS.gene59499 | 0.861232 | 1.19E-63 | -1.69E-46 |
| MS.gene058292 | MS.gene59499 | 0.845728 | 3.39E-59 | -1.69E-46 |
| MS.gene058638 | MS.gene59499 | 0.836243 | 1.05E-56 | -1.69E-46 |
| MS.gene058639 | MS.gene59499 | 0.837408 | 5.29E-57 | -1.69E-46 |
| MS.gene058649 | MS.gene59499 | 0.83267 | 8.28E-56 | -1.69E-46 |
| MS.gene058919 | MS.gene59499 | 0.845606 | 3.66E-59 | -1.69E-46 |
| MS.gene059007 | MS.gene59499 | 0.814069 | 1.86E-51 | -1.69E-46 |
| MS.gene059439 | MS.gene59499 | 0.812112 | 5.00E-51 | -1.69E-46 |
| MS.gene059965 | MS.gene59499 | 0.814702 | 1.35E-51 | -1.69E-46 |
| MS.gene060785 | MS.gene59499 | 0.802401 | 5.71E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene59499 | 0.877745 | 4.91E-69 | -1.69E-46 |
| MS.gene060935 | MS.gene59499 | 0.809589 | 1.76E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene59499 | 0.837642 | 4.61E-57 | -1.69E-46 |
| MS.gene061006 | MS.gene59499 | 0.823412 | 1.40E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene59499 | 0.830588 | 2.70E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59499 | MS.gene24125 | PPI |
| MS.gene27090 | MS.gene59499 | PPI |
| MS.gene64038 | MS.gene59499 | PPI |
| MS.gene64039 | MS.gene59499 | PPI |
| MS.gene64041 | MS.gene59499 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59499.t1 | MTR_5g022610 | 99.118 | 794 | 5 | 1 | 1 | 792 | 1 | 794 | 0.0 | 1625 |
| MS.gene59499.t1 | MTR_5g022610 | 99.233 | 652 | 5 | 0 | 1 | 652 | 1 | 652 | 0.0 | 1335 |
| MS.gene59499.t1 | MTR_1g025610 | 77.233 | 795 | 174 | 3 | 1 | 792 | 1 | 791 | 0.0 | 1274 |
| MS.gene59499.t1 | MTR_1g025610 | 77.428 | 731 | 158 | 3 | 65 | 792 | 1 | 727 | 0.0 | 1172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59499.t1 | AT2G17790 | 76.768 | 792 | 179 | 2 | 1 | 792 | 1 | 787 | 0.0 | 1261 |
| MS.gene59499.t1 | AT1G75850 | 75.379 | 792 | 188 | 3 | 3 | 792 | 4 | 790 | 0.0 | 1244 |
| MS.gene59499.t1 | AT3G51310 | 72.877 | 789 | 205 | 4 | 7 | 792 | 4 | 786 | 0.0 | 1176 |
| MS.gene59499.t1 | AT1G75850 | 73.132 | 562 | 144 | 3 | 233 | 792 | 1 | 557 | 0.0 | 841 |
Find 171 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAATTGCATTGCTTAATT+TGG | 0.084194 | 5.4:+14104086 | None:intergenic |
| TATGCCTTAAGCGGGCTTTA+AGG | 0.189667 | 5.4:-14096375 | MS.gene59499:CDS |
| TTGAAAGCCTTTCCATTAAC+TGG | 0.202513 | 5.4:+14104166 | None:intergenic |
| TGTTCATTTCTGTGAAATTT+TGG | 0.207828 | 5.4:+14106247 | None:intergenic |
| CTGGTCTGCAGGGGCCTTCC+CGG | 0.210811 | 5.4:-14105492 | MS.gene59499:intron |
| GACAGTACTATCCCAGTTAA+TGG | 0.262602 | 5.4:-14104178 | MS.gene59499:CDS |
| CATTCATAATTAACTCAATT+AGG | 0.271218 | 5.4:+14096124 | None:intergenic |
| ATGCGTGCTCACATTTGTTT+TGG | 0.279351 | 5.4:-14096900 | MS.gene59499:CDS |
| AGCATTGTTTGAACTGATAA+AGG | 0.285330 | 5.4:-14099353 | MS.gene59499:CDS |
| TGCAATCCATCAAGTAGAAT+TGG | 0.299727 | 5.4:+14105098 | None:intergenic |
| TGATCCAGAAGAGATGTTTA+AGG | 0.301898 | 5.4:-14099040 | MS.gene59499:intron |
| AGTCAAGAAGAAAATCCTTT+TGG | 0.307658 | 5.4:-14098138 | MS.gene59499:CDS |
| CCTTGACGTTCCAACTAATA+AGG | 0.309908 | 5.4:-14099527 | MS.gene59499:CDS |
| GTTGGCCCAATTCTACTTGA+TGG | 0.310066 | 5.4:-14105104 | MS.gene59499:CDS |
| CACAGAAATGAACAAACTTT+GGG | 0.324886 | 5.4:-14106238 | MS.gene59499:CDS |
| ACAGCTATCCATTTGATAAT+AGG | 0.329025 | 5.4:-14097130 | MS.gene59499:CDS |
| GATCATCATTATAAAACATT+TGG | 0.340860 | 5.4:+14099058 | None:intergenic |
| TCACAGAAATGAACAAACTT+TGG | 0.345532 | 5.4:-14106239 | MS.gene59499:CDS |
| AAGGATAAATTGCCGGATAT+TGG | 0.347189 | 5.4:-14106742 | MS.gene59499:CDS |
| GGGCGCTTACCCTCAACTTC+AGG | 0.349713 | 5.4:-14105023 | MS.gene59499:intron |
| AAGCCCGCTTAAGGCATAAT+AGG | 0.353896 | 5.4:+14096380 | None:intergenic |
| AGTTACAGTTGCTGCTATCC+AGG | 0.385834 | 5.4:-14096148 | MS.gene59499:CDS |
| TCCTGCTAAGGATGTTCTTA+AGG | 0.387412 | 5.4:-14106842 | MS.gene59499:CDS |
| CTCGCCTTAAACATCTCTTC+TGG | 0.388061 | 5.4:+14099036 | None:intergenic |
| CAAACTCTTGATGTGCTGTT+GGG | 0.388585 | 5.4:-14105043 | MS.gene59499:CDS |
| ATGTCTTCGGTGTTGAGAAC+AGG | 0.390066 | 5.4:-14097090 | MS.gene59499:CDS |
| AAGCTCGTAAAGATCAATAA+TGG | 0.401737 | 5.4:+14108861 | None:intergenic |
| GCATTGTTTGAACTGATAAA+GGG | 0.403489 | 5.4:-14099352 | MS.gene59499:CDS |
| TTATCTTTCTCAAGTTAGTA+AGG | 0.406534 | 5.4:-14106761 | MS.gene59499:CDS |
| TTCCTCGCCGCCGGGATCGC+CGG | 0.408704 | 5.4:-14109336 | MS.gene59499:CDS |
| TCCAAATTAAGCAATGCAAT+TGG | 0.414365 | 5.4:-14104087 | MS.gene59499:CDS |
| GTTTGCAAATGGTACTCATC+AGG | 0.414564 | 5.4:+14105061 | None:intergenic |
| CAGCCTGACATGCCCACTGC+TGG | 0.415024 | 5.4:-14100056 | MS.gene59499:CDS |
| GAGGAACTTCTCTTCATCTT+CGG | 0.420874 | 5.4:+14109353 | None:intergenic |
| TCCACATGTCAAACCTTGAT+TGG | 0.421015 | 5.4:+14095991 | None:intergenic |
| CAATCCTTAAAGCCCGCTTA+AGG | 0.421497 | 5.4:+14096371 | None:intergenic |
| TTTCTCGTTTCTCCTTCTCC+CGG | 0.421907 | 5.4:+14105473 | None:intergenic |
| CTGTTGAAGTCCGGCGATCC+CGG | 0.424132 | 5.4:+14109326 | None:intergenic |
| GCAAACTCTTGATGTGCTGT+TGG | 0.425162 | 5.4:-14105044 | MS.gene59499:CDS |
| TGGTCTGCAGGGGCCTTCCC+GGG | 0.427856 | 5.4:-14105491 | MS.gene59499:intron |
| GCAAAATGTTGCCGGCGTGC+TGG | 0.429765 | 5.4:+14108836 | None:intergenic |
| TTGGGTGCGGATGCAGCATC+AGG | 0.431226 | 5.4:-14106220 | MS.gene59499:intron |
| ACTCCAGCAGTGGGCATGTC+AGG | 0.434101 | 5.4:+14100053 | None:intergenic |
| CGTTTCTCCTTCTCCCGGGA+AGG | 0.438675 | 5.4:+14105478 | None:intergenic |
| CAATCGCGGCAAAATGTTGC+CGG | 0.441838 | 5.4:+14108828 | None:intergenic |
| CGAGACTCTGTCAGGTGTCC+TGG | 0.442445 | 5.4:-14097492 | MS.gene59499:CDS |
| TTTACTGTCTACAGTTGGTC+AGG | 0.443803 | 5.4:-14098182 | MS.gene59499:intron |
| TGCAAATGCTGCACAACAAA+TGG | 0.444033 | 5.4:-14096350 | MS.gene59499:CDS |
| AGTTAGTAAGGATAAATTGC+CGG | 0.449777 | 5.4:-14106749 | MS.gene59499:CDS |
| GTTGCCATGACCTTATTAGT+TGG | 0.450360 | 5.4:+14099517 | None:intergenic |
| TTCAAACTACCCTCGTGTAA+TGG | 0.463333 | 5.4:-14099554 | MS.gene59499:CDS |
| ACAGTGAAAGGCAGACGCTT+TGG | 0.463935 | 5.4:+14098812 | None:intergenic |
| GAAGAGTTCCTATTATCAAA+TGG | 0.465787 | 5.4:+14097122 | None:intergenic |
| TCATGTTCTCAGTCAGATAG+AGG | 0.467619 | 5.4:-14105301 | MS.gene59499:CDS |
| TCAGCATAATCTAGTCGATC+GGG | 0.469613 | 5.4:+14099984 | None:intergenic |
| TGAGAAATATGAACCAATCA+AGG | 0.471525 | 5.4:-14096004 | MS.gene59499:CDS |
| AAAGCATCTGCCGATGGATC+CGG | 0.476967 | 5.4:+14096084 | None:intergenic |
| TATCTTTACTTCTTTGAGAA+GGG | 0.481938 | 5.4:-14096180 | MS.gene59499:CDS |
| CTTCAAAGGATGCATGTCTT+CGG | 0.482111 | 5.4:-14097103 | MS.gene59499:CDS |
| GCAATCCATCAAGTAGAATT+GGG | 0.487567 | 5.4:+14105099 | None:intergenic |
| GAAGAGAAGTTCCTCGCCGC+CGG | 0.487633 | 5.4:-14109345 | MS.gene59499:CDS |
| TACACAGCTCTGCATTGATC+TGG | 0.488790 | 5.4:+14096922 | None:intergenic |
| GCAGGGGCCTTCCCGGGAGA+AGG | 0.490072 | 5.4:-14105485 | MS.gene59499:intron |
| CAGACCATCGAGACTCTGTC+AGG | 0.494213 | 5.4:-14097500 | MS.gene59499:CDS |
| TTTACCTGCTCAAGTACTCT+AGG | 0.496535 | 5.4:+14105243 | None:intergenic |
| ACTGATAAAGGGGCTTATCA+AGG | 0.497046 | 5.4:-14099341 | MS.gene59499:CDS |
| AATGAAGAGCATTACTGATC+CGG | 0.499744 | 5.4:+14096306 | None:intergenic |
| CTGAGAAAGAGTCCACGAAC+AGG | 0.501578 | 5.4:+14106787 | None:intergenic |
| GGCATTCAGAATCCTGTTCG+TGG | 0.501736 | 5.4:-14106799 | MS.gene59499:CDS |
| GATAGCTGTGACCTGTGCTC+TGG | 0.502526 | 5.4:+14097144 | None:intergenic |
| ATTCTACATGCACCGTGCAT+TGG | 0.505624 | 5.4:-14109298 | MS.gene59499:intron |
| TTTAAAGAAGAAAACATAAG+AGG | 0.507523 | 5.4:+14098785 | None:intergenic |
| TGCGCGCATTTGATCAATTG+AGG | 0.507817 | 5.4:-14108927 | MS.gene59499:CDS |
| GTATCTTTACTTCTTTGAGA+AGG | 0.508035 | 5.4:-14096181 | MS.gene59499:CDS |
| TAATTAACTCAATTAGGCCC+TGG | 0.511873 | 5.4:+14096130 | None:intergenic |
| ACTGAAATGACCTCTTCATC+AGG | 0.513627 | 5.4:+14099304 | None:intergenic |
| TCCTTAAGAACATCCTTAGC+AGG | 0.514144 | 5.4:+14106841 | None:intergenic |
| TAGCAGCAACTGTAACTTGT+GGG | 0.515070 | 5.4:+14096154 | None:intergenic |
| ATTTGATCAATTGAGGAAGC+TGG | 0.517144 | 5.4:-14108920 | MS.gene59499:CDS |
| TTCTCGTTTCTCCTTCTCCC+GGG | 0.525927 | 5.4:+14105474 | None:intergenic |
| ACTTTAACTCACAAGGCCAC+AGG | 0.526213 | 5.4:-14097064 | MS.gene59499:CDS |
| GAATGAATTCTGTTGAAGTC+CGG | 0.528606 | 5.4:+14109317 | None:intergenic |
| GGAGAAGGAGAAACGAGAAA+AGG | 0.529242 | 5.4:-14105470 | MS.gene59499:CDS |
| TGAAAGCCTTTCCATTAACT+GGG | 0.530830 | 5.4:+14104167 | None:intergenic |
| TGAAATGCAAAGTGCAACTC+CGG | 0.533863 | 5.4:-14096103 | MS.gene59499:CDS |
| AGATTATGCTGATCAAGTCT+TGG | 0.535438 | 5.4:-14099973 | MS.gene59499:intron |
| ATGTCATTATATTTCTCTAG+TGG | 0.538353 | 5.4:+14099595 | None:intergenic |
| AAGAGAAGTTCCTCGCCGCC+GGG | 0.539003 | 5.4:-14109344 | MS.gene59499:CDS |
| GATCATGATAACATGAAAGA+TGG | 0.539688 | 5.4:-14096871 | MS.gene59499:CDS |
| GTGAGGAAGCACATACTGAC+TGG | 0.539810 | 5.4:-14098839 | MS.gene59499:CDS |
| TCGTACTCAGAACCAATATC+CGG | 0.540147 | 5.4:+14106730 | None:intergenic |
| GCACATCAAGAGTTTGCAAA+TGG | 0.543783 | 5.4:+14105050 | None:intergenic |
| AGGGTAGTTTGAAAGCTTCA+AGG | 0.545666 | 5.4:+14099564 | None:intergenic |
| AAACAAAAGGGTGGTACAGT+TGG | 0.548365 | 5.4:-14096027 | MS.gene59499:CDS |
| GTTGATGCATCATCTCCAAA+AGG | 0.553449 | 5.4:+14098123 | None:intergenic |
| AGGTATCTCCTCTGTACAGT+AGG | 0.554384 | 5.4:-14106892 | MS.gene59499:CDS |
| GTTCCCTAACCTGAAGTTGA+GGG | 0.556360 | 5.4:+14105014 | None:intergenic |
| ATAAGAGGTGGAACAGTGAA+AGG | 0.559617 | 5.4:+14098800 | None:intergenic |
| ATCGAAGGAAGCTCCTGCTA+AGG | 0.560242 | 5.4:-14106854 | MS.gene59499:CDS |
| CGTGAATTGCAAAGATGAGT+TGG | 0.561375 | 5.4:-14105122 | MS.gene59499:CDS |
| CACAACTGCAATGCTAACTC+TGG | 0.562797 | 5.4:+14097467 | None:intergenic |
| TGATAATAGGAACTCTTCAA+AGG | 0.563619 | 5.4:-14097117 | MS.gene59499:CDS |
| AATGCAGCACGAGGTAGCAC+CGG | 0.565115 | 5.4:-14096325 | MS.gene59499:CDS |
| AAGTGCAACTCCGGATCCAT+CGG | 0.567190 | 5.4:-14096094 | MS.gene59499:CDS |
| GAAGCTGGAGATGTTCTTCG+AGG | 0.574256 | 5.4:-14108905 | MS.gene59499:CDS |
| AGGTAAAATTGAGGACAAGA+AGG | 0.574526 | 5.4:-14099650 | MS.gene59499:CDS |
| GTCCGGCGATCCCGGCGGCG+AGG | 0.575496 | 5.4:+14109334 | None:intergenic |
| GGCTTATCAAGGATTCTGAC+GGG | 0.575698 | 5.4:-14099330 | MS.gene59499:CDS |
| AGTCCTATTATGCCTTAAGC+GGG | 0.575988 | 5.4:-14096383 | MS.gene59499:CDS |
| CCTTATTAGTTGGAACGTCA+AGG | 0.577662 | 5.4:+14099527 | None:intergenic |
| CTCTGGCAAAGGTAAAATTG+AGG | 0.578328 | 5.4:-14099659 | MS.gene59499:CDS |
| ATCAGCATAATCTAGTCGAT+CGG | 0.578728 | 5.4:+14099983 | None:intergenic |
| GGCTGCAAATGACTGTGAGT+TGG | 0.580108 | 5.4:-14097347 | MS.gene59499:CDS |
| GCAATGCTAACTCTGGTGCC+AGG | 0.580206 | 5.4:+14097474 | None:intergenic |
| TGTCTTCGGTGTTGAGAACA+GGG | 0.583710 | 5.4:-14097089 | MS.gene59499:CDS |
| TTTGCAAATGGTACTCATCA+GGG | 0.584013 | 5.4:+14105062 | None:intergenic |
| CAACATCTTTGTACATCTCA+AGG | 0.584038 | 5.4:+14105271 | None:intergenic |
| CTTTAACTCACAAGGCCACA+GGG | 0.584542 | 5.4:-14097063 | MS.gene59499:CDS |
| TAAAGTTACAACTCCAGCAG+TGG | 0.587524 | 5.4:+14100043 | None:intergenic |
| AAAGAAGAAAACATAAGAGG+TGG | 0.590024 | 5.4:+14098788 | None:intergenic |
| CATTGTTTGAACTGATAAAG+GGG | 0.590196 | 5.4:-14099351 | MS.gene59499:CDS |
| TACGAGCTTGTCCAGCACGC+CGG | 0.590451 | 5.4:-14108847 | MS.gene59499:CDS |
| TTATGCTGCTTCAAGTGCAG+AGG | 0.591369 | 5.4:-14104142 | MS.gene59499:CDS |
| GGATATTGGTTCTGAGTACG+AGG | 0.594039 | 5.4:-14106728 | MS.gene59499:CDS |
| CGTTCCAACTAATAAGGTCA+TGG | 0.594538 | 5.4:-14099521 | MS.gene59499:CDS |
| ATCTGTATACATCAAATCGA+AGG | 0.594866 | 5.4:-14106869 | MS.gene59499:CDS |
| GCTTCCTAGAGTACTTGAGC+AGG | 0.596217 | 5.4:-14105247 | MS.gene59499:intron |
| CAGGGATACTTTAACTCACA+AGG | 0.597480 | 5.4:-14097071 | MS.gene59499:CDS |
| TACTATCCCAGTTAATGGAA+AGG | 0.598378 | 5.4:-14104173 | MS.gene59499:CDS |
| AATTGTTATACAGGTCATAG+AGG | 0.598940 | 5.4:-14100081 | MS.gene59499:intron |
| GAGTCCTATTATGCCTTAAG+CGG | 0.599450 | 5.4:-14096384 | MS.gene59499:CDS |
| GGGCTTATCAAGGATTCTGA+CGG | 0.602860 | 5.4:-14099331 | MS.gene59499:CDS |
| GACACCTGACAGAGTCTCGA+TGG | 0.603687 | 5.4:+14097496 | None:intergenic |
| TGACGGGACTCCTGATGAAG+AGG | 0.605204 | 5.4:-14099314 | MS.gene59499:intron |
| GTTACAGTTGCTGCTATCCA+GGG | 0.605864 | 5.4:-14096147 | MS.gene59499:CDS |
| AAATGAACAAACTTTGGGTG+CGG | 0.606382 | 5.4:-14106233 | MS.gene59499:CDS |
| AGTTCCCTAACCTGAAGTTG+AGG | 0.609828 | 5.4:+14105013 | None:intergenic |
| ATGGAGGAGTTACCAATGCA+CGG | 0.609855 | 5.4:+14109286 | None:intergenic |
| ATACCAGGATTCCAGAGCAC+AGG | 0.612388 | 5.4:-14097155 | MS.gene59499:intron |
| CAGAGTTCGTAGTATTTGTG+AGG | 0.614445 | 5.4:+14109066 | None:intergenic |
| ATTAAGCAATGCAATTGGCA+AGG | 0.614576 | 5.4:-14104082 | MS.gene59499:intron |
| CTGTATATAGCGCATAGTAG+TGG | 0.620971 | 5.4:+14096056 | None:intergenic |
| CATGTTCTCAGTCAGATAGA+GGG | 0.621850 | 5.4:-14105300 | MS.gene59499:CDS |
| GCTAAGAAAGCATCTGCCGA+TGG | 0.622652 | 5.4:+14096078 | None:intergenic |
| AGGAGAAACGAGAAAAGGAG+AGG | 0.627935 | 5.4:-14105465 | MS.gene59499:CDS |
| TTCAGATCATTGAAACTGTG+AGG | 0.627976 | 5.4:-14098856 | MS.gene59499:intron |
| AAAGTTACAACTCCAGCAGT+GGG | 0.628281 | 5.4:+14100044 | None:intergenic |
| GGATGAAGATGATTTCAAAG+AGG | 0.628375 | 5.4:-14099106 | MS.gene59499:CDS |
| GTTGTGCTTGCAATGTGCTG+AGG | 0.641551 | 5.4:-14097450 | MS.gene59499:intron |
| GGGGTGGACATGAAGAGTGA+AGG | 0.643078 | 5.4:+14100004 | None:intergenic |
| ATAACATGAAAGATGGAGAG+AGG | 0.651839 | 5.4:-14096864 | MS.gene59499:intron |
| CAGTTGGTCAGGCAGTTGCA+AGG | 0.652495 | 5.4:-14098171 | MS.gene59499:CDS |
| TTCGAGGAAGAGACTCGTCG+TGG | 0.654957 | 5.4:-14108889 | MS.gene59499:CDS |
| AATAACACATACCTTGTCAG+AGG | 0.659815 | 5.4:+14099450 | None:intergenic |
| CCGGAGAAAATGATGCTCGA+CGG | 0.665622 | 5.4:-14109378 | None:intergenic |
| ATAGCAGCAACTGTAACTTG+TGG | 0.666553 | 5.4:+14096153 | None:intergenic |
| ACGCATTTCTACCTCTGACA+AGG | 0.688272 | 5.4:-14099461 | MS.gene59499:intron |
| GATATTGGTTCTGAGTACGA+GGG | 0.691815 | 5.4:-14106727 | MS.gene59499:CDS |
| TCTAGCACCACTTACAATCG+CGG | 0.693955 | 5.4:+14108814 | None:intergenic |
| CATAATCTAGTCGATCGGGG+TGG | 0.695269 | 5.4:+14099988 | None:intergenic |
| CAAATGGCAAATGCAGCACG+AGG | 0.695757 | 5.4:-14096334 | MS.gene59499:CDS |
| TTGAAGTCCGGCGATCCCGG+CGG | 0.697531 | 5.4:+14109329 | None:intergenic |
| CAGCATAATCTAGTCGATCG+GGG | 0.697857 | 5.4:+14099985 | None:intergenic |
| ATATTGGTTCTGAGTACGAG+GGG | 0.701758 | 5.4:-14106726 | MS.gene59499:intron |
| TCAAGGAATTCCATTACACG+AGG | 0.703879 | 5.4:+14099544 | None:intergenic |
| AGGAAGCACATACTGACTGG+AGG | 0.706279 | 5.4:-14098836 | MS.gene59499:CDS |
| GATCTTGTAGAGATGTGTCG+TGG | 0.708072 | 5.4:-14106820 | MS.gene59499:CDS |
| GAATTCAATAATCACCCCTG+TGG | 0.722096 | 5.4:+14097048 | None:intergenic |
| TTTAACTCACAAGGCCACAG+GGG | 0.727627 | 5.4:-14097062 | MS.gene59499:intron |
| ATACAGATCCTACTGTACAG+AGG | 0.740473 | 5.4:+14106884 | None:intergenic |
| CAAGGAATTCCATTACACGA+GGG | 0.748600 | 5.4:+14099545 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 14095999 | 14109391 | 14095999 | ID=MS.gene59499 |
| chr5.4 | mRNA | 14095999 | 14109391 | 14095999 | ID=MS.gene59499.t1;Parent=MS.gene59499 |
| chr5.4 | exon | 14109299 | 14109391 | 14109299 | ID=MS.gene59499.t1.exon1;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14109299 | 14109391 | 14109299 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| chr5.4 | exon | 14109067 | 14109163 | 14109067 | ID=MS.gene59499.t1.exon2;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14109067 | 14109163 | 14109067 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| chr5.4 | exon | 14108829 | 14108952 | 14108829 | ID=MS.gene59499.t1.exon3;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14108829 | 14108952 | 14108829 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| chr5.4 | exon | 14106727 | 14106912 | 14106727 | ID=MS.gene59499.t1.exon4;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14106727 | 14106912 | 14106727 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| chr5.4 | exon | 14106221 | 14106308 | 14106221 | ID=MS.gene59499.t1.exon5;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14106221 | 14106308 | 14106221 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| chr5.4 | exon | 14105447 | 14105503 | 14105447 | ID=MS.gene59499.t1.exon6;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14105447 | 14105503 | 14105447 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| chr5.4 | exon | 14105248 | 14105337 | 14105248 | ID=MS.gene59499.t1.exon7;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14105248 | 14105337 | 14105248 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| chr5.4 | exon | 14105024 | 14105146 | 14105024 | ID=MS.gene59499.t1.exon8;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14105024 | 14105146 | 14105024 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| chr5.4 | exon | 14104083 | 14104217 | 14104083 | ID=MS.gene59499.t1.exon9;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14104083 | 14104217 | 14104083 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| chr5.4 | exon | 14099974 | 14100090 | 14099974 | ID=MS.gene59499.t1.exon10;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14099974 | 14100090 | 14099974 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| chr5.4 | exon | 14099462 | 14099701 | 14099462 | ID=MS.gene59499.t1.exon11;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14099462 | 14099701 | 14099462 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| chr5.4 | exon | 14099315 | 14099380 | 14099315 | ID=MS.gene59499.t1.exon12;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14099315 | 14099380 | 14099315 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| chr5.4 | exon | 14099041 | 14099130 | 14099041 | ID=MS.gene59499.t1.exon13;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14099041 | 14099130 | 14099041 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| chr5.4 | exon | 14098784 | 14098873 | 14098784 | ID=MS.gene59499.t1.exon14;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14098784 | 14098873 | 14098784 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| chr5.4 | exon | 14098089 | 14098190 | 14098089 | ID=MS.gene59499.t1.exon15;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14098089 | 14098190 | 14098089 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| chr5.4 | exon | 14097451 | 14097519 | 14097451 | ID=MS.gene59499.t1.exon16;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14097451 | 14097519 | 14097451 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| chr5.4 | exon | 14097288 | 14097368 | 14097288 | ID=MS.gene59499.t1.exon17;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14097288 | 14097368 | 14097288 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| chr5.4 | exon | 14097063 | 14097170 | 14097063 | ID=MS.gene59499.t1.exon18;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14097063 | 14097170 | 14097063 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| chr5.4 | exon | 14096865 | 14096968 | 14096865 | ID=MS.gene59499.t1.exon19;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14096865 | 14096968 | 14096865 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| chr5.4 | exon | 14096292 | 14096405 | 14096292 | ID=MS.gene59499.t1.exon20;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14096292 | 14096405 | 14096292 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| chr5.4 | exon | 14095999 | 14096203 | 14095999 | ID=MS.gene59499.t1.exon21;Parent=MS.gene59499.t1 |
| chr5.4 | CDS | 14095999 | 14096203 | 14095999 | ID=cds.MS.gene59499.t1;Parent=MS.gene59499.t1 |
| Gene Sequence |
| Protein sequence |
