Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65247.t1 | XP_013451618.1 | 99.8 | 490 | 1 | 0 | 1 | 490 | 1 | 490 | 4.50E-284 | 986.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65247.t1 | Q2R3K3 | 85.5 | 483 | 70 | 0 | 1 | 483 | 1 | 483 | 4.4e-248 | 858.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65247.t1 | A0A072U8D8 | 99.8 | 490 | 1 | 0 | 1 | 490 | 1 | 490 | 3.2e-284 | 986.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene65247 | -0.81976 | 9.81E-53 | -1.69E-46 |
| MS.gene049222 | MS.gene65247 | -0.818906 | 1.53E-52 | -1.69E-46 |
| MS.gene049615 | MS.gene65247 | -0.805584 | 1.24E-49 | -1.69E-46 |
| MS.gene050363 | MS.gene65247 | 0.804324 | 2.28E-49 | -1.69E-46 |
| MS.gene050380 | MS.gene65247 | 0.81816 | 2.27E-52 | -1.69E-46 |
| MS.gene050381 | MS.gene65247 | 0.852261 | 5.18E-61 | -1.69E-46 |
| MS.gene050479 | MS.gene65247 | 0.824864 | 6.41E-54 | -1.69E-46 |
| MS.gene050504 | MS.gene65247 | -0.807875 | 4.08E-50 | -1.69E-46 |
| MS.gene050538 | MS.gene65247 | -0.821164 | 4.67E-53 | -1.69E-46 |
| MS.gene050547 | MS.gene65247 | 0.840941 | 6.42E-58 | -1.69E-46 |
| MS.gene050772 | MS.gene65247 | -0.804017 | 2.64E-49 | -1.69E-46 |
| MS.gene051366 | MS.gene65247 | 0.80235 | 5.85E-49 | -1.69E-46 |
| MS.gene051387 | MS.gene65247 | -0.802312 | 5.96E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene65247 | -0.801612 | 8.30E-49 | -1.69E-46 |
| MS.gene051694 | MS.gene65247 | -0.827575 | 1.45E-54 | -1.69E-46 |
| MS.gene051858 | MS.gene65247 | -0.835592 | 1.53E-56 | -1.69E-46 |
| MS.gene053107 | MS.gene65247 | -0.806653 | 7.41E-50 | -1.69E-46 |
| MS.gene053207 | MS.gene65247 | -0.804644 | 1.96E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene65247 | -0.800354 | 1.50E-48 | -1.69E-46 |
| MS.gene053420 | MS.gene65247 | 0.81298 | 3.23E-51 | -1.69E-46 |
| MS.gene053436 | MS.gene65247 | -0.811456 | 6.94E-51 | -1.69E-46 |
| MS.gene053561 | MS.gene65247 | 0.830342 | 3.10E-55 | -1.69E-46 |
| MS.gene054595 | MS.gene65247 | -0.80895 | 2.41E-50 | -1.69E-46 |
| MS.gene054706 | MS.gene65247 | 0.805197 | 1.50E-49 | -1.69E-46 |
| MS.gene054708 | MS.gene65247 | 0.816129 | 6.48E-52 | -1.69E-46 |
| MS.gene055154 | MS.gene65247 | 0.836663 | 8.20E-57 | -1.69E-46 |
| MS.gene055202 | MS.gene65247 | 0.807036 | 6.15E-50 | -1.69E-46 |
| MS.gene055206 | MS.gene65247 | -0.819464 | 1.15E-52 | -1.69E-46 |
| MS.gene055289 | MS.gene65247 | -0.803525 | 3.34E-49 | -1.69E-46 |
| MS.gene055502 | MS.gene65247 | -0.813602 | 2.36E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene65247 | -0.836964 | 6.87E-57 | -1.69E-46 |
| MS.gene055941 | MS.gene65247 | -0.801379 | 9.26E-49 | -1.69E-46 |
| MS.gene056313 | MS.gene65247 | 0.828546 | 8.46E-55 | -1.69E-46 |
| MS.gene056550 | MS.gene65247 | 0.809109 | 2.23E-50 | -1.69E-46 |
| MS.gene056796 | MS.gene65247 | -0.801738 | 7.82E-49 | -1.69E-46 |
| MS.gene058323 | MS.gene65247 | -0.80096 | 1.13E-48 | -1.69E-46 |
| MS.gene05837 | MS.gene65247 | -0.835064 | 2.09E-56 | -1.69E-46 |
| MS.gene058773 | MS.gene65247 | -0.800108 | 1.68E-48 | -1.69E-46 |
| MS.gene058840 | MS.gene65247 | 0.823356 | 1.45E-53 | -1.69E-46 |
| MS.gene059023 | MS.gene65247 | -0.816795 | 4.60E-52 | -1.69E-46 |
| MS.gene05934 | MS.gene65247 | -0.800882 | 1.17E-48 | -1.69E-46 |
| MS.gene059718 | MS.gene65247 | -0.807282 | 5.45E-50 | -1.69E-46 |
| MS.gene059902 | MS.gene65247 | -0.843146 | 1.68E-58 | -1.69E-46 |
| MS.gene060482 | MS.gene65247 | -0.81574 | 7.92E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene65247 | -0.812292 | 4.56E-51 | -1.69E-46 |
| MS.gene06092 | MS.gene65247 | -0.824728 | 6.90E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65247.t1 | MTR_6g033290 | 99.796 | 490 | 1 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1018 |
| MS.gene65247.t1 | MTR_3g054030 | 25.131 | 382 | 258 | 7 | 101 | 467 | 111 | 479 | 1.60e-34 | 135 |
| MS.gene65247.t1 | MTR_5g072020 | 24.869 | 382 | 259 | 7 | 101 | 467 | 111 | 479 | 3.87e-34 | 134 |
| MS.gene65247.t1 | MTR_3g008020 | 25.882 | 340 | 206 | 6 | 143 | 462 | 142 | 455 | 8.23e-22 | 98.6 |
| MS.gene65247.t1 | MTR_1g018970 | 30.583 | 206 | 131 | 4 | 103 | 304 | 112 | 309 | 8.21e-21 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65247.t1 | AT5G23670 | 85.031 | 481 | 72 | 0 | 1 | 481 | 1 | 481 | 0.0 | 876 |
| MS.gene65247.t1 | AT5G23670 | 85.031 | 481 | 72 | 0 | 1 | 481 | 1 | 481 | 0.0 | 876 |
| MS.gene65247.t1 | AT3G48780 | 83.542 | 480 | 79 | 0 | 1 | 480 | 1 | 480 | 0.0 | 864 |
| MS.gene65247.t1 | AT3G48780 | 83.542 | 480 | 79 | 0 | 1 | 480 | 1 | 480 | 0.0 | 864 |
| MS.gene65247.t1 | AT3G48790 | 76.149 | 348 | 76 | 1 | 143 | 490 | 7 | 347 | 0.0 | 561 |
| MS.gene65247.t1 | AT3G48790 | 75.776 | 322 | 71 | 1 | 169 | 490 | 1 | 315 | 0.0 | 518 |
| MS.gene65247.t1 | AT4G36480 | 25.745 | 369 | 246 | 8 | 103 | 456 | 112 | 467 | 7.75e-32 | 128 |
| MS.gene65247.t1 | AT4G36480 | 25.745 | 369 | 246 | 8 | 103 | 456 | 112 | 467 | 7.75e-32 | 128 |
| MS.gene65247.t1 | AT5G04620 | 25.641 | 390 | 247 | 8 | 95 | 466 | 97 | 461 | 1.80e-26 | 112 |
| MS.gene65247.t1 | AT5G04620 | 27.193 | 342 | 207 | 7 | 143 | 466 | 11 | 328 | 3.43e-26 | 109 |
| MS.gene65247.t1 | AT4G36480 | 29.565 | 230 | 152 | 4 | 103 | 329 | 112 | 334 | 1.91e-25 | 107 |
| MS.gene65247.t1 | AT5G04620 | 25.926 | 270 | 170 | 5 | 95 | 346 | 97 | 354 | 1.31e-19 | 91.7 |
Find 121 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCGGATCTTTGCAAGTTTC+TGG | -0.006417 | 6.2:+23166594 | None:intergenic |
| CCTTGAGAAGGCAGGGATTT+TGG | 0.130317 | 6.2:+23166472 | None:intergenic |
| TTTATAGGCATATACATATT+TGG | 0.174681 | 6.2:-23169029 | MS.gene65247:intron |
| TTCCAGGGCCTATGTGTTCT+TGG | 0.189231 | 6.2:+23169871 | None:intergenic |
| TAGATTATATCTTCGGATTC+AGG | 0.217064 | 6.2:-23175042 | MS.gene65247:intron |
| TGAAGGAACCTGAAGATTAT+TGG | 0.257979 | 6.2:+23175349 | None:intergenic |
| AACCACAACTCAATTGTTAA+TGG | 0.265196 | 6.2:-23170622 | MS.gene65247:CDS |
| TGCTATTCTTCCGGTCTTGA+TGG | 0.282578 | 6.2:-23170762 | MS.gene65247:CDS |
| TCTTCCATAAAAGTTATTCT+TGG | 0.284948 | 6.2:-23166771 | MS.gene65247:CDS |
| TACGGTTTGCTCTTCGCTTT+CGG | 0.288207 | 6.2:-23175416 | MS.gene65247:CDS |
| TAAAGCATGATTGGCATTAC+AGG | 0.302338 | 6.2:+23166503 | None:intergenic |
| GCCAGTAGCAATGGGGTTGC+TGG | 0.321595 | 6.2:+23166308 | None:intergenic |
| GAGCAAACCGTAACTGAAAT+AGG | 0.338413 | 6.2:+23175427 | None:intergenic |
| GGTTATGCACCGATCTGTTT+AGG | 0.340054 | 6.2:-23175086 | MS.gene65247:CDS |
| AGATGGGATTTGAAGTTCTT+GGG | 0.340919 | 6.2:-23166538 | MS.gene65247:CDS |
| AAGATGGGATTTGAAGTTCT+TGG | 0.344461 | 6.2:-23166539 | MS.gene65247:CDS |
| AATAACCATTATCTTCTTCC+AGG | 0.349116 | 6.2:+23169855 | None:intergenic |
| TCGGATCTTTGCAAGTTTCT+GGG | 0.355382 | 6.2:+23166595 | None:intergenic |
| AAGACATCGACTTACTTTAC+TGG | 0.356195 | 6.2:+23171100 | None:intergenic |
| TTGGGATCATATAACTATCT+TGG | 0.360855 | 6.2:-23171074 | MS.gene65247:CDS |
| AAGGGGTGTTTGTGAGCTCT+TGG | 0.362856 | 6.2:-23168969 | MS.gene65247:CDS |
| GGGACATTCACCAAATCATT+TGG | 0.367081 | 6.2:-23168914 | MS.gene65247:CDS |
| GTGCAGTTCCAATAATCTTC+AGG | 0.379110 | 6.2:-23175357 | MS.gene65247:intron |
| TGTTGCTTCGTTGGTTCAGC+AGG | 0.388343 | 6.2:+23165429 | None:intergenic |
| GTTAATGGTGCGCGGGGATC+AGG | 0.391282 | 6.2:-23170607 | MS.gene65247:CDS |
| TCCACATGATCCAAATGATT+TGG | 0.396058 | 6.2:+23168904 | None:intergenic |
| GATATTATTTGTTGTGCAGC+TGG | 0.396206 | 6.2:+23166792 | None:intergenic |
| GCATCAGGAGCACTTGATAT+TGG | 0.396763 | 6.2:+23171366 | None:intergenic |
| GACAAACTCTGCTATTCTTC+CGG | 0.400770 | 6.2:-23170771 | MS.gene65247:CDS |
| ATTGGAGCTGTGGGCAAGAC+AGG | 0.401548 | 6.2:-23168992 | MS.gene65247:CDS |
| AGACCTTACCAAGGCCTTGC+AGG | 0.401800 | 6.2:-23166246 | MS.gene65247:intron |
| CAGGTCAGAATTGCAGAAGA+TGG | 0.405068 | 6.2:-23166555 | MS.gene65247:CDS |
| ATATTCGTAGATTATATCTT+CGG | 0.409758 | 6.2:-23175049 | MS.gene65247:CDS |
| GACAGCACTTCACAATGAAT+TGG | 0.415510 | 6.2:-23170855 | MS.gene65247:CDS |
| CCTTCTCAAGGGAGTGCCTC+AGG | 0.415913 | 6.2:-23166460 | MS.gene65247:CDS |
| GCTATTCTTCCGGTCTTGAT+GGG | 0.419350 | 6.2:-23170761 | MS.gene65247:CDS |
| AGGTTATATTGCAGGATCTA+AGG | 0.420449 | 6.2:-23168882 | MS.gene65247:intron |
| TGTTTGTGAGCTCTTGGGTG+TGG | 0.428313 | 6.2:-23168963 | MS.gene65247:CDS |
| TCATGTGGAGGTTATATTGC+AGG | 0.428713 | 6.2:-23168890 | MS.gene65247:CDS |
| AGCAGTGTAGGTGATCTAAT+TGG | 0.428852 | 6.2:-23165465 | MS.gene65247:CDS |
| TCCAGCAACCCCATTGCTAC+TGG | 0.437632 | 6.2:-23166309 | MS.gene65247:CDS |
| GCTGGGTTGTAAAGCATGAT+TGG | 0.438158 | 6.2:+23166494 | None:intergenic |
| GCATATCAGCTTCTCATTCA+AGG | 0.439438 | 6.2:-23166271 | MS.gene65247:CDS |
| CTCACAACCTATTTCAGTTA+CGG | 0.442612 | 6.2:-23175434 | MS.gene65247:CDS |
| AGGGGTGTTTGTGAGCTCTT+GGG | 0.442767 | 6.2:-23168968 | MS.gene65247:CDS |
| CTCAATTGTTAATGGTGCGC+GGG | 0.442812 | 6.2:-23170614 | MS.gene65247:CDS |
| CTCCAAGCACTTGCAGTACC+CGG | 0.449501 | 6.2:-23170992 | MS.gene65247:CDS |
| GTGCTCTAGCCAGTAGCAAT+GGG | 0.469424 | 6.2:+23166300 | None:intergenic |
| AAAGTTATTCTTGGCGAAGA+TGG | 0.473909 | 6.2:-23166762 | MS.gene65247:CDS |
| AGGCACTCCCTTGAGAAGGC+AGG | 0.474944 | 6.2:+23166464 | None:intergenic |
| TCTTGTTGTTGTTGCTTCGT+TGG | 0.475549 | 6.2:+23165420 | None:intergenic |
| GAAGTTGCATAAAGATGTGC+AGG | 0.479396 | 6.2:+23166825 | None:intergenic |
| TTGCATATAGCTATGACCTC+TGG | 0.480390 | 6.2:+23169790 | None:intergenic |
| AGTAAGTCGATGTCTTAACT+TGG | 0.490464 | 6.2:-23171093 | MS.gene65247:CDS |
| ACCCGGGTACTGCAAGTGCT+TGG | 0.490715 | 6.2:+23170990 | None:intergenic |
| TGCTGATATTGATATTATGA+TGG | 0.491151 | 6.2:-23168936 | MS.gene65247:CDS |
| TAGGCCCTGGAAGAAGATAA+TGG | 0.496204 | 6.2:-23169860 | MS.gene65247:CDS |
| ACCAAATCATTTGGATCATG+TGG | 0.496543 | 6.2:-23168905 | MS.gene65247:CDS |
| AGGTCAGAATTGCAGAAGAT+GGG | 0.499602 | 6.2:-23166554 | MS.gene65247:CDS |
| GAGCTGTGGGCAAGACAGGA+AGG | 0.499919 | 6.2:-23168988 | MS.gene65247:CDS |
| TATCAAGTGCTCCTGATGCT+TGG | 0.504033 | 6.2:-23171362 | MS.gene65247:CDS |
| TTGGATGAAGCACACAGCAT+TGG | 0.505271 | 6.2:-23169010 | MS.gene65247:CDS |
| ATATTATTTGTTGTGCAGCT+GGG | 0.510480 | 6.2:+23166793 | None:intergenic |
| GCTGTGGGCAAGACAGGAAG+GGG | 0.511167 | 6.2:-23168986 | MS.gene65247:CDS |
| AAGATAATGGTTATTGTGGA+GGG | 0.512429 | 6.2:-23169847 | MS.gene65247:CDS |
| CATATCAGCTTCTCATTCAA+GGG | 0.517556 | 6.2:-23166270 | MS.gene65247:CDS |
| TCGTAGGTTATTAGCAGTGT+AGG | 0.517821 | 6.2:-23165477 | MS.gene65247:intron |
| AACACTTCTTCTAGATGTGC+TGG | 0.517825 | 6.2:+23169919 | None:intergenic |
| CACCATTAACAATTGAGTTG+TGG | 0.520038 | 6.2:+23170620 | None:intergenic |
| AATACACACCTGCAAGGCCT+TGG | 0.520353 | 6.2:+23166238 | None:intergenic |
| CCAAAATCCCTGCCTTCTCA+AGG | 0.521117 | 6.2:-23166472 | MS.gene65247:CDS |
| ACTACATCAAACCAAGCATC+AGG | 0.526562 | 6.2:+23171351 | None:intergenic |
| GGCGAAGATGGTTCAAGTCG+AGG | 0.527475 | 6.2:-23166750 | MS.gene65247:intron |
| GAAGATAATGGTTATTGTGG+AGG | 0.528355 | 6.2:-23169848 | MS.gene65247:CDS |
| AGCCAAGAACACATAGGCCC+TGG | 0.529238 | 6.2:-23169873 | MS.gene65247:CDS |
| AACACCTACCTCCATCCACC+CGG | 0.529626 | 6.2:+23170973 | None:intergenic |
| CGTGCTCTAGCCAGTAGCAA+TGG | 0.529943 | 6.2:+23166299 | None:intergenic |
| GAAGAAGATAATGGTTATTG+TGG | 0.532678 | 6.2:-23169851 | MS.gene65247:CDS |
| AGCACACAGCATTGGAGCTG+TGG | 0.542128 | 6.2:-23169002 | MS.gene65247:CDS |
| TCTTCCGGTCTTGATGGGGA+AGG | 0.547239 | 6.2:-23170756 | MS.gene65247:intron |
| GATGGGATTTGAAGTTCTTG+GGG | 0.548122 | 6.2:-23166537 | MS.gene65247:CDS |
| GTTGTGAGTGCAGTGAGATA+CGG | 0.551717 | 6.2:+23175449 | None:intergenic |
| ATAACCATTATCTTCTTCCA+GGG | 0.552346 | 6.2:+23169856 | None:intergenic |
| GGCACTCCCTTGAGAAGGCA+GGG | 0.562551 | 6.2:+23166465 | None:intergenic |
| CCAACCTTCCCCATCAAGAC+CGG | 0.565338 | 6.2:+23170752 | None:intergenic |
| ACTTGCAGTACCCGGGTGGA+TGG | 0.568260 | 6.2:-23170984 | MS.gene65247:CDS |
| GCACACAGCATTGGAGCTGT+GGG | 0.572363 | 6.2:-23169001 | MS.gene65247:CDS |
| GTAAGTCGATGTCTTAACTT+GGG | 0.573929 | 6.2:-23171092 | MS.gene65247:CDS |
| CTATTCTTCCGGTCTTGATG+GGG | 0.578052 | 6.2:-23170760 | MS.gene65247:CDS |
| TATTATTTGTTGTGCAGCTG+GGG | 0.583240 | 6.2:+23166794 | None:intergenic |
| TCCAAGCACTTGCAGTACCC+GGG | 0.584468 | 6.2:-23170991 | MS.gene65247:CDS |
| CCTGAGGCACTCCCTTGAGA+AGG | 0.586563 | 6.2:+23166460 | None:intergenic |
| AGCTGTGGGCAAGACAGGAA+GGG | 0.586982 | 6.2:-23168987 | MS.gene65247:CDS |
| GAGGGGATATACAGCATGGA+AGG | 0.589376 | 6.2:-23169829 | MS.gene65247:CDS |
| ACACCTGCAAGGCCTTGGTA+AGG | 0.589912 | 6.2:+23166243 | None:intergenic |
| ATGCTCTCACATTCTGCCTG+AGG | 0.595562 | 6.2:+23166444 | None:intergenic |
| TCTTCAAGTCCTAAACAGAT+CGG | 0.597403 | 6.2:+23175077 | None:intergenic |
| GCTGATATTGATATTATGAT+GGG | 0.597573 | 6.2:-23168935 | MS.gene65247:CDS |
| AGCACTTCACAATGAATTGG+AGG | 0.599950 | 6.2:-23170852 | MS.gene65247:CDS |
| AGATAATGGTTATTGTGGAG+GGG | 0.602319 | 6.2:-23169846 | MS.gene65247:CDS |
| TGCAGTACCCGGGTGGATGG+AGG | 0.604267 | 6.2:-23170981 | MS.gene65247:intron |
| GTTGCTTCGTTGGTTCAGCA+GGG | 0.605794 | 6.2:+23165430 | None:intergenic |
| CAAAATCCCTGCCTTCTCAA+GGG | 0.606834 | 6.2:-23166471 | MS.gene65247:CDS |
| AAATCATTTGGATCATGTGG+AGG | 0.617237 | 6.2:-23168902 | MS.gene65247:CDS |
| ACTCAATTGTTAATGGTGCG+CGG | 0.623218 | 6.2:-23170615 | MS.gene65247:CDS |
| ACGAAGCAACAACAACAAGA+TGG | 0.626909 | 6.2:-23165417 | MS.gene65247:CDS |
| TCAATTGTTAATGGTGCGCG+GGG | 0.631969 | 6.2:-23170613 | MS.gene65247:CDS |
| TGTGGAGGGGATATACAGCA+TGG | 0.637466 | 6.2:-23169833 | MS.gene65247:CDS |
| AGAGCTTTGCAAACTTCCAG+AGG | 0.643274 | 6.2:-23169806 | MS.gene65247:CDS |
| TTCAATGTATCAATCACTCG+AGG | 0.654322 | 6.2:+23171023 | None:intergenic |
| ACACCTACCTCCATCCACCC+GGG | 0.655848 | 6.2:+23170974 | None:intergenic |
| ATTCAAAATACACACCTGCA+AGG | 0.666529 | 6.2:+23166232 | None:intergenic |
| GTTACGAGAACAAATTGCTG+AGG | 0.666746 | 6.2:-23169899 | MS.gene65247:CDS |
| ATTATTTGTTGTGCAGCTGG+GGG | 0.677207 | 6.2:+23166795 | None:intergenic |
| TTACGAGAACAAATTGCTGA+GGG | 0.680475 | 6.2:-23169898 | MS.gene65247:CDS |
| TGCTCTAGCCAGTAGCAATG+GGG | 0.685686 | 6.2:+23166301 | None:intergenic |
| AAGCACTTGCAGTACCCGGG+TGG | 0.689971 | 6.2:-23170988 | MS.gene65247:CDS |
| AGGGACAGCCAAGAACACAT+AGG | 0.690788 | 6.2:-23169879 | MS.gene65247:CDS |
| TTCAAGGGAAGACCTTACCA+AGG | 0.690942 | 6.2:-23166255 | MS.gene65247:CDS |
| AAGTTGCATAAAGATGTGCA+GGG | 0.717646 | 6.2:+23166826 | None:intergenic |
| CTGATATTGATATTATGATG+GGG | 0.726376 | 6.2:-23168934 | MS.gene65247:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 23165395 | 23175483 | 23165395 | ID=MS.gene65247 |
| chr6.2 | mRNA | 23165395 | 23175483 | 23165395 | ID=MS.gene65247.t1;Parent=MS.gene65247 |
| chr6.2 | exon | 23175358 | 23175483 | 23175358 | ID=MS.gene65247.t1.exon1;Parent=MS.gene65247.t1 |
| chr6.2 | CDS | 23175358 | 23175483 | 23175358 | ID=cds.MS.gene65247.t1;Parent=MS.gene65247.t1 |
| chr6.2 | exon | 23175043 | 23175108 | 23175043 | ID=MS.gene65247.t1.exon2;Parent=MS.gene65247.t1 |
| chr6.2 | CDS | 23175043 | 23175108 | 23175043 | ID=cds.MS.gene65247.t1;Parent=MS.gene65247.t1 |
| chr6.2 | exon | 23171315 | 23171403 | 23171315 | ID=MS.gene65247.t1.exon3;Parent=MS.gene65247.t1 |
| chr6.2 | CDS | 23171315 | 23171403 | 23171315 | ID=cds.MS.gene65247.t1;Parent=MS.gene65247.t1 |
| chr6.2 | exon | 23170982 | 23171127 | 23170982 | ID=MS.gene65247.t1.exon4;Parent=MS.gene65247.t1 |
| chr6.2 | CDS | 23170982 | 23171127 | 23170982 | ID=cds.MS.gene65247.t1;Parent=MS.gene65247.t1 |
| chr6.2 | exon | 23170757 | 23170881 | 23170757 | ID=MS.gene65247.t1.exon5;Parent=MS.gene65247.t1 |
| chr6.2 | CDS | 23170757 | 23170881 | 23170757 | ID=cds.MS.gene65247.t1;Parent=MS.gene65247.t1 |
| chr6.2 | exon | 23170578 | 23170671 | 23170578 | ID=MS.gene65247.t1.exon6;Parent=MS.gene65247.t1 |
| chr6.2 | CDS | 23170578 | 23170671 | 23170578 | ID=cds.MS.gene65247.t1;Parent=MS.gene65247.t1 |
| chr6.2 | exon | 23169780 | 23169943 | 23169780 | ID=MS.gene65247.t1.exon7;Parent=MS.gene65247.t1 |
| chr6.2 | CDS | 23169780 | 23169943 | 23169780 | ID=cds.MS.gene65247.t1;Parent=MS.gene65247.t1 |
| chr6.2 | exon | 23168883 | 23169044 | 23168883 | ID=MS.gene65247.t1.exon8;Parent=MS.gene65247.t1 |
| chr6.2 | CDS | 23168883 | 23169044 | 23168883 | ID=cds.MS.gene65247.t1;Parent=MS.gene65247.t1 |
| chr6.2 | exon | 23166751 | 23166877 | 23166751 | ID=MS.gene65247.t1.exon9;Parent=MS.gene65247.t1 |
| chr6.2 | CDS | 23166751 | 23166877 | 23166751 | ID=cds.MS.gene65247.t1;Parent=MS.gene65247.t1 |
| chr6.2 | exon | 23166454 | 23166620 | 23166454 | ID=MS.gene65247.t1.exon10;Parent=MS.gene65247.t1 |
| chr6.2 | CDS | 23166454 | 23166620 | 23166454 | ID=cds.MS.gene65247.t1;Parent=MS.gene65247.t1 |
| chr6.2 | exon | 23166247 | 23166354 | 23166247 | ID=MS.gene65247.t1.exon11;Parent=MS.gene65247.t1 |
| chr6.2 | CDS | 23166247 | 23166354 | 23166247 | ID=cds.MS.gene65247.t1;Parent=MS.gene65247.t1 |
| chr6.2 | exon | 23165395 | 23165493 | 23165395 | ID=MS.gene65247.t1.exon12;Parent=MS.gene65247.t1 |
| chr6.2 | CDS | 23165395 | 23165493 | 23165395 | ID=cds.MS.gene65247.t1;Parent=MS.gene65247.t1 |
| Gene Sequence |
| Protein sequence |
