Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66407.t1 | XP_013453200.1 | 98.6 | 634 | 8 | 1 | 4 | 636 | 26 | 659 | 0.00E+00 | 1261.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66407.t1 | O23247 | 72.2 | 587 | 157 | 3 | 50 | 636 | 62 | 642 | 2.0e-256 | 886.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66407.t1 | A0A072UDN7 | 98.6 | 634 | 8 | 1 | 4 | 636 | 26 | 659 | 0.0e+00 | 1261.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene66407 | 0.854691 | 1.04E-61 | -1.69E-46 |
| MS.gene04933 | MS.gene66407 | 0.806158 | 9.42E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene66407 | 0.81243 | 4.26E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene66407 | 0.817901 | 2.59E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene66407 | 0.806594 | 7.63E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene66407 | 0.807255 | 5.53E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene66407 | 0.846792 | 1.74E-59 | -1.69E-46 |
| MS.gene050319 | MS.gene66407 | -0.806102 | 9.68E-50 | -1.69E-46 |
| MS.gene050558 | MS.gene66407 | 0.82804 | 1.12E-54 | -1.69E-46 |
| MS.gene051662 | MS.gene66407 | 0.813605 | 2.35E-51 | -1.69E-46 |
| MS.gene051663 | MS.gene66407 | 0.845101 | 5.01E-59 | -1.69E-46 |
| MS.gene051860 | MS.gene66407 | 0.801667 | 8.08E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene66407 | 0.806343 | 8.61E-50 | -1.69E-46 |
| MS.gene052207 | MS.gene66407 | 0.849529 | 3.05E-60 | -1.69E-46 |
| MS.gene053085 | MS.gene66407 | 0.802638 | 5.10E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene66407 | 0.866107 | 3.63E-65 | -1.69E-46 |
| MS.gene054473 | MS.gene66407 | 0.830564 | 2.74E-55 | -1.69E-46 |
| MS.gene05455 | MS.gene66407 | 0.801832 | 7.48E-49 | -1.69E-46 |
| MS.gene054667 | MS.gene66407 | 0.804391 | 2.21E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene66407 | 0.844858 | 5.83E-59 | -1.69E-46 |
| MS.gene054942 | MS.gene66407 | 0.841793 | 3.83E-58 | -1.69E-46 |
| MS.gene055390 | MS.gene66407 | 0.815707 | 8.05E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene66407 | 0.841218 | 5.43E-58 | -1.69E-46 |
| MS.gene055428 | MS.gene66407 | 0.824095 | 9.72E-54 | -1.69E-46 |
| MS.gene055604 | MS.gene66407 | 0.802556 | 5.31E-49 | -1.69E-46 |
| MS.gene056069 | MS.gene66407 | -0.804235 | 2.38E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene66407 | 0.860903 | 1.49E-63 | -1.69E-46 |
| MS.gene057245 | MS.gene66407 | 0.834138 | 3.56E-56 | -1.69E-46 |
| MS.gene057439 | MS.gene66407 | 0.815911 | 7.25E-52 | -1.69E-46 |
| MS.gene057469 | MS.gene66407 | 0.822948 | 1.80E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene66407 | 0.838553 | 2.69E-57 | -1.69E-46 |
| MS.gene05811 | MS.gene66407 | 0.824552 | 7.59E-54 | -1.69E-46 |
| MS.gene058142 | MS.gene66407 | 0.842572 | 2.38E-58 | -1.69E-46 |
| MS.gene058749 | MS.gene66407 | 0.832442 | 9.43E-56 | -1.69E-46 |
| MS.gene058833 | MS.gene66407 | 0.826705 | 2.34E-54 | -1.69E-46 |
| MS.gene058845 | MS.gene66407 | 0.811199 | 7.89E-51 | -1.69E-46 |
| MS.gene05886 | MS.gene66407 | 0.800803 | 1.21E-48 | -1.69E-46 |
| MS.gene059518 | MS.gene66407 | 0.806502 | 7.97E-50 | -1.69E-46 |
| MS.gene059597 | MS.gene66407 | 0.814311 | 1.64E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene66407 | 0.810326 | 1.22E-50 | -1.69E-46 |
| MS.gene060918 | MS.gene66407 | 0.811496 | 6.80E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26848 | MS.gene66407 | PPI |
| MS.gene80766 | MS.gene66407 | PPI |
| MS.gene66407 | MS.gene065875 | PPI |
| MS.gene66407 | MS.gene061256 | PPI |
| MS.gene58136 | MS.gene66407 | PPI |
| MS.gene66407 | MS.gene029093 | PPI |
| MS.gene58134 | MS.gene66407 | PPI |
| MS.gene66407 | MS.gene68406 | PPI |
| MS.gene66407 | MS.gene031761 | PPI |
| MS.gene28183 | MS.gene66407 | PPI |
| MS.gene90825 | MS.gene66407 | PPI |
| MS.gene66407 | MS.gene030099 | PPI |
| MS.gene052373 | MS.gene66407 | PPI |
| MS.gene66407 | MS.gene037771 | PPI |
| MS.gene66407 | MS.gene70283 | PPI |
| MS.gene66407 | MS.gene70282 | PPI |
| MS.gene97346 | MS.gene66407 | PPI |
| MS.gene030686 | MS.gene66407 | PPI |
| MS.gene066439 | MS.gene66407 | PPI |
| MS.gene28454 | MS.gene66407 | PPI |
| MS.gene030685 | MS.gene66407 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66407.t1 | MTR_6g088865 | 98.580 | 634 | 8 | 1 | 4 | 636 | 26 | 659 | 0.0 | 1298 |
| MS.gene66407.t1 | MTR_3g110380 | 77.143 | 595 | 134 | 2 | 43 | 636 | 3 | 596 | 0.0 | 985 |
| MS.gene66407.t1 | MTR_1g106040 | 77.479 | 595 | 132 | 2 | 43 | 636 | 3 | 596 | 0.0 | 984 |
| MS.gene66407.t1 | MTR_4g102240 | 69.652 | 603 | 166 | 2 | 43 | 636 | 3 | 597 | 0.0 | 889 |
| MS.gene66407.t1 | MTR_7g099100 | 39.362 | 94 | 52 | 1 | 66 | 159 | 7 | 95 | 1.04e-15 | 75.1 |
| MS.gene66407.t1 | MTR_5g014910 | 64.706 | 51 | 16 | 1 | 281 | 329 | 18 | 68 | 4.33e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66407.t1 | AT4G26300 | 67.874 | 635 | 197 | 4 | 3 | 636 | 14 | 642 | 0.0 | 906 |
| MS.gene66407.t1 | AT4G26300 | 72.109 | 588 | 158 | 3 | 49 | 636 | 35 | 616 | 0.0 | 905 |
| MS.gene66407.t1 | AT4G26300 | 72.109 | 588 | 158 | 3 | 49 | 636 | 48 | 629 | 0.0 | 904 |
| MS.gene66407.t1 | AT4G26300 | 72.109 | 588 | 158 | 3 | 49 | 636 | 72 | 653 | 0.0 | 904 |
| MS.gene66407.t1 | AT4G26300 | 72.109 | 588 | 158 | 3 | 49 | 636 | 9 | 590 | 0.0 | 904 |
| MS.gene66407.t1 | AT1G66530 | 71.186 | 590 | 158 | 4 | 47 | 636 | 13 | 590 | 0.0 | 892 |
Find 150 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACCTATATGGGTACATTT+TGG | 0.209197 | 6.3:+82739565 | None:intergenic |
| TGCATTTCCTTTGCTATATT+AGG | 0.230117 | 6.3:+82742587 | None:intergenic |
| CACCTTAGATCTACCATAAT+TGG | 0.239076 | 6.3:-82742557 | MS.gene66407:CDS |
| ATTGAGAAGCTGGATAAATT+AGG | 0.258389 | 6.3:-82740292 | MS.gene66407:CDS |
| TCATGAATCTGAGCGTTTAT+TGG | 0.264785 | 6.3:-82737476 | MS.gene66407:CDS |
| CATGAATCTGAGCGTTTATT+GGG | 0.272551 | 6.3:-82737475 | MS.gene66407:CDS |
| CCTTCCCTTTGGCAGGTTGT+AGG | 0.275119 | 6.3:-82736829 | MS.gene66407:intron |
| ACAGAATGGGGTTATTGTTT+TGG | 0.275705 | 6.3:-82737500 | MS.gene66407:intron |
| GAACAAGACCAAAACCTATA+TGG | 0.279776 | 6.3:+82739554 | None:intergenic |
| GGCTAATGTGTCTCCAATTA+TGG | 0.291070 | 6.3:+82742544 | None:intergenic |
| TCAATAACCCCGGGGATATA+TGG | 0.291279 | 6.3:+82740310 | None:intergenic |
| GGAATGACGGAAAACGATTT+AGG | 0.294789 | 6.3:-82739528 | MS.gene66407:CDS |
| CTGTTTCACTAACATCTTCT+TGG | 0.301819 | 6.3:+82741878 | None:intergenic |
| AAATGTACCCATATAGGTTT+TGG | 0.307172 | 6.3:-82739562 | MS.gene66407:CDS |
| AACAAATTTGTGATATTAGT+AGG | 0.317651 | 6.3:-82741005 | MS.gene66407:CDS |
| TTGTGCCCTCAGCTTAAATT+CGG | 0.343494 | 6.3:+82741162 | None:intergenic |
| GTAATAATGCAATGGGTATA+TGG | 0.356456 | 6.3:-82743320 | MS.gene66407:CDS |
| ACACTTTGATATGCTATATA+AGG | 0.359400 | 6.3:-82739927 | MS.gene66407:intron |
| TTGTTCTATCATCAGGAAAT+CGG | 0.359703 | 6.3:-82737830 | MS.gene66407:CDS |
| ATTGTGTATGTTACTGATAT+TGG | 0.367298 | 6.3:-82739959 | MS.gene66407:CDS |
| ATTTACTTGATGAAGCTAAA+AGG | 0.368508 | 6.3:-82739474 | MS.gene66407:CDS |
| TGATCAGATGCTTAGTGATA+AGG | 0.369123 | 6.3:-82739023 | MS.gene66407:intron |
| GATGTTTGCACCGCCAAAAC+TGG | 0.377872 | 6.3:-82743513 | MS.gene66407:CDS |
| TGATGAAGATTGTTGAGTTT+TGG | 0.385201 | 6.3:+82746287 | None:intergenic |
| TCACTAACATCTTCTTGGTT+TGG | 0.385208 | 6.3:+82741883 | None:intergenic |
| AACAGCCATCGGAGATCTTC+AGG | 0.387102 | 6.3:-82741860 | MS.gene66407:intron |
| GAGCAGTGAGGTTGTTCGTT+TGG | 0.392276 | 6.3:-82739500 | MS.gene66407:CDS |
| CAACCGATCTCGCATCGCTT+TGG | 0.393057 | 6.3:-82740171 | MS.gene66407:intron |
| TTGTGTATGTTACTGATATT+GGG | 0.393093 | 6.3:-82739958 | MS.gene66407:CDS |
| TATCCAAAATGTACCCATAT+AGG | 0.395742 | 6.3:-82739568 | MS.gene66407:CDS |
| ATGGGTTATAACTTGTAAAC+AGG | 0.397197 | 6.3:+82736721 | None:intergenic |
| CTAGGATTTGTTCTATCATC+AGG | 0.401484 | 6.3:-82737837 | MS.gene66407:CDS |
| AAGCTCAAAGGAAAGGAAAC+TGG | 0.405680 | 6.3:-82743294 | MS.gene66407:CDS |
| CATCAGAGGCAATTGGTTAC+GGG | 0.416031 | 6.3:-82739258 | MS.gene66407:CDS |
| ACATCAGAGGCAATTGGTTA+CGG | 0.418994 | 6.3:-82739259 | MS.gene66407:CDS |
| GTCGAAATCATGTTGGTGAC+TGG | 0.424997 | 6.3:-82742484 | MS.gene66407:CDS |
| AAAGTTCTATTCTAATTGTC+AGG | 0.425546 | 6.3:-82737169 | MS.gene66407:intron |
| TTCTAGATACAACTAATGAT+TGG | 0.428395 | 6.3:-82739303 | MS.gene66407:intron |
| CTCCAATTATGGTAGATCTA+AGG | 0.428684 | 6.3:+82742555 | None:intergenic |
| TGGAGTTCAACTGGAGGAAA+TGG | 0.431540 | 6.3:-82740953 | MS.gene66407:intron |
| ATTTAAGCTGAGGGCACAAC+AGG | 0.437434 | 6.3:-82741158 | MS.gene66407:CDS |
| GGCGGTGCAAACATCAACTA+AGG | 0.438474 | 6.3:+82743521 | None:intergenic |
| TCATGCTCTTTAGCTGGTCC+AGG | 0.440742 | 6.3:-82742873 | MS.gene66407:CDS |
| TCAACGTCTTGGAGTTCAAC+TGG | 0.441535 | 6.3:-82740962 | MS.gene66407:CDS |
| TCAACCATAGCCCTCCTGAT+TGG | 0.449478 | 6.3:+82742620 | None:intergenic |
| AAGACAACATTAACAAATCC+TGG | 0.452633 | 6.3:+82742855 | None:intergenic |
| GAGAAAACATCAGAGGCAAT+TGG | 0.457627 | 6.3:-82739265 | MS.gene66407:CDS |
| ACAGGCAGTGGTTCTGCTCC+AGG | 0.461427 | 6.3:-82741140 | MS.gene66407:intron |
| AGGTAATCACACAGCACATT+AGG | 0.467880 | 6.3:+82737219 | None:intergenic |
| TTTCAGGCCTTTAGGCGTGC+AGG | 0.469388 | 6.3:-82739616 | MS.gene66407:intron |
| GATTATACCTGTCCAATAGC+AGG | 0.471468 | 6.3:+82743258 | None:intergenic |
| CCCCGGGGTTATTGAGAAGC+TGG | 0.473086 | 6.3:-82740302 | MS.gene66407:CDS |
| TGTTCTATCATCAGGAAATC+GGG | 0.475649 | 6.3:-82737829 | MS.gene66407:CDS |
| AACAAGACCAAAACCTATAT+GGG | 0.476698 | 6.3:+82739555 | None:intergenic |
| GGCACAACATCTTCCTCATC+TGG | 0.481833 | 6.3:+82743543 | None:intergenic |
| AAAACTGGCAGTGTAAAATT+CGG | 0.483146 | 6.3:-82743498 | MS.gene66407:CDS |
| GGCGTGCAGGTTGGCTTCCA+CGG | 0.483559 | 6.3:-82739603 | MS.gene66407:CDS |
| GGGCACCTCGACTTCCAATC+AGG | 0.485972 | 6.3:-82742634 | MS.gene66407:CDS |
| TTGCCATGCCTTGCGATACC+TGG | 0.487038 | 6.3:+82741026 | None:intergenic |
| TAACCAAAGCGATGCGAGAT+CGG | 0.488721 | 6.3:+82740168 | None:intergenic |
| AAGCCAACCTGCACGCCTAA+AGG | 0.488759 | 6.3:+82739609 | None:intergenic |
| TAAAATTCGGTGATTATCAA+TGG | 0.490072 | 6.3:-82743485 | MS.gene66407:intron |
| ATAGATTCATGCTCTTTAGC+TGG | 0.490847 | 6.3:-82742879 | MS.gene66407:CDS |
| AGACATTGAAGAAGTAAAGA+AGG | 0.494672 | 6.3:-82737803 | MS.gene66407:intron |
| TATCTCAGAGTGGGGATACC+AGG | 0.495254 | 6.3:-82741044 | MS.gene66407:intron |
| TGGTGCAGTAATAATGCAAT+GGG | 0.498904 | 6.3:-82743327 | MS.gene66407:intron |
| TCCAGCTTCTCAATAACCCC+GGG | 0.501106 | 6.3:+82740301 | None:intergenic |
| GCTGGATAAATTAGGATTGG+TGG | 0.502134 | 6.3:-82740284 | MS.gene66407:CDS |
| TTCTATAATCCATATATCCC+CGG | 0.508489 | 6.3:-82740319 | MS.gene66407:CDS |
| ATGTTGTCTTGTCAAAGCAT+TGG | 0.509068 | 6.3:-82742842 | MS.gene66407:CDS |
| TGTGCCCTCAGCTTAAATTC+GGG | 0.511525 | 6.3:+82741163 | None:intergenic |
| TCGAAATCATGTTGGTGACT+GGG | 0.512556 | 6.3:-82742483 | MS.gene66407:CDS |
| GACAAGGTCTATCAACGTCT+TGG | 0.512705 | 6.3:-82740973 | MS.gene66407:CDS |
| GAAGCTGGATAAATTAGGAT+TGG | 0.513016 | 6.3:-82740287 | MS.gene66407:CDS |
| ATTTGCTCTATGCACATGCT+AGG | 0.514570 | 6.3:-82737855 | MS.gene66407:CDS |
| ACAAATTTGTGATATTAGTA+GGG | 0.515922 | 6.3:-82741004 | MS.gene66407:CDS |
| TTCCTCTCCTAATATAGCAA+AGG | 0.518979 | 6.3:-82742594 | MS.gene66407:CDS |
| ACTTCCAATCAGGAGGGCTA+TGG | 0.520747 | 6.3:-82742624 | MS.gene66407:CDS |
| TCTATAATCCATATATCCCC+GGG | 0.521268 | 6.3:-82740318 | MS.gene66407:CDS |
| GTCAAAGCATTGGATAGCTC+AGG | 0.522519 | 6.3:-82742832 | MS.gene66407:intron |
| GGAAAGGAAACTGGATTCAA+AGG | 0.524359 | 6.3:-82743285 | MS.gene66407:CDS |
| TTTCGTAAAGATTTCTGCCA+AGG | 0.524425 | 6.3:+82737191 | None:intergenic |
| ATGAAGACTTACAATAGATA+AGG | 0.525752 | 6.3:+82746227 | None:intergenic |
| AGGCCTTTAGGCGTGCAGGT+TGG | 0.532398 | 6.3:-82739612 | MS.gene66407:CDS |
| GATTGGAAGTCGAGGTGCCC+AGG | 0.533086 | 6.3:+82742637 | None:intergenic |
| GGTCTTGTTCTTGGGAATGA+CGG | 0.535827 | 6.3:-82739541 | MS.gene66407:CDS |
| CATGAATCTATCATTTCAGA+TGG | 0.541436 | 6.3:+82742891 | None:intergenic |
| TGTAAACAGGTTCAATTCCA+AGG | 0.543827 | 6.3:+82736734 | None:intergenic |
| GTACATTACCACGTTCAAGA+AGG | 0.544032 | 6.3:+82739437 | None:intergenic |
| TTCCTTTGCTATATTAGGAG+AGG | 0.546637 | 6.3:+82742592 | None:intergenic |
| ATCCAGCTTCTCAATAACCC+CGG | 0.548776 | 6.3:+82740300 | None:intergenic |
| GCTGAGGGCACAACAGGCAG+TGG | 0.549833 | 6.3:-82741152 | MS.gene66407:CDS |
| AGATTTCTGCCAAGGTATAG+AGG | 0.551819 | 6.3:+82737199 | None:intergenic |
| TACATTACCACGTTCAAGAA+GGG | 0.554480 | 6.3:+82739438 | None:intergenic |
| TTGGTGCAGTAATAATGCAA+TGG | 0.559513 | 6.3:-82743328 | MS.gene66407:intron |
| TGGAGGAAGATTGTTAATGA+TGG | 0.561457 | 6.3:+82742911 | None:intergenic |
| TAAATGATGGTATTGATACC+TGG | 0.561596 | 6.3:-82742655 | MS.gene66407:CDS |
| AAAAGTCTACTAGTTTCCTC+AGG | 0.570208 | 6.3:+82736802 | None:intergenic |
| ATTATACCTGTCCAATAGCA+GGG | 0.574659 | 6.3:+82743259 | None:intergenic |
| GTCACCAACATGATTTCGAC+GGG | 0.578960 | 6.3:+82742487 | None:intergenic |
| GTACAAAGGATGCTAAATGA+TGG | 0.581813 | 6.3:-82742668 | MS.gene66407:CDS |
| GGTATATGGTCGAAGCTCAA+AGG | 0.583447 | 6.3:-82743306 | MS.gene66407:CDS |
| GCTCGTGTGATATATGTTGA+GGG | 0.584942 | 6.3:-82740247 | MS.gene66407:CDS |
| CACCTCGACTTCCAATCAGG+AGG | 0.587835 | 6.3:-82742631 | MS.gene66407:CDS |
| ACGTGAAAATTCAAGCATGC+GGG | 0.589466 | 6.3:+82742523 | None:intergenic |
| CACGTGAAAATTCAAGCATG+CGG | 0.589509 | 6.3:+82742522 | None:intergenic |
| AACTAATGATTGGTCTGAGG+AGG | 0.598206 | 6.3:-82739293 | MS.gene66407:CDS |
| ACGGAAAACGATTTAGGAGT+CGG | 0.602408 | 6.3:-82739522 | MS.gene66407:CDS |
| CGAAATCATGTTGGTGACTG+GGG | 0.602786 | 6.3:-82742482 | MS.gene66407:CDS |
| ATGGTCGAAGCTCAAAGGAA+AGG | 0.604469 | 6.3:-82743301 | MS.gene66407:CDS |
| AGTCACCAACATGATTTCGA+CGG | 0.606648 | 6.3:+82742486 | None:intergenic |
| TCCTACTGCAGAGCGTACAA+AGG | 0.608375 | 6.3:-82742682 | MS.gene66407:intron |
| AAAGACAATTGTGCCAGATG+AGG | 0.611264 | 6.3:-82743556 | MS.gene66407:CDS |
| CTTACAATAGATAAGGTAGG+AGG | 0.611439 | 6.3:+82746234 | None:intergenic |
| ATTATTGCTGTGAAAAGAGA+TGG | 0.613326 | 6.3:-82740211 | MS.gene66407:CDS |
| TGTTGGTGACTGGGGAACAC+AGG | 0.615523 | 6.3:-82742474 | MS.gene66407:intron |
| TCTATAAGGCATCTAAAGTG+AGG | 0.617569 | 6.3:-82741198 | MS.gene66407:CDS |
| TGCTCGTGTGATATATGTTG+AGG | 0.619716 | 6.3:-82740248 | MS.gene66407:CDS |
| AAATGATGGTATTGATACCT+GGG | 0.620700 | 6.3:-82742654 | MS.gene66407:CDS |
| GCCCTCCTGATTGGAAGTCG+AGG | 0.625087 | 6.3:+82742629 | None:intergenic |
| TGGGGATACCAGGTATCGCA+AGG | 0.626622 | 6.3:-82741034 | MS.gene66407:CDS |
| AGACTTACAATAGATAAGGT+AGG | 0.630403 | 6.3:+82746231 | None:intergenic |
| TGATCCCGAATTTAAGCTGA+GGG | 0.631435 | 6.3:-82741167 | MS.gene66407:CDS |
| GTTACCCGTCGAAATCATGT+TGG | 0.631464 | 6.3:-82742491 | MS.gene66407:CDS |
| ATACCAGGTATCGCAAGGCA+TGG | 0.632918 | 6.3:-82741029 | MS.gene66407:CDS |
| TCTCACCTGAAGATCTCCGA+TGG | 0.633055 | 6.3:+82741855 | None:intergenic |
| ATGAATCTGAGCGTTTATTG+GGG | 0.635831 | 6.3:-82737474 | MS.gene66407:CDS |
| ACCTCGACTTCCAATCAGGA+GGG | 0.641855 | 6.3:-82742630 | MS.gene66407:CDS |
| GGATACGCGTTCTCATTCCG+TGG | 0.646781 | 6.3:+82739586 | None:intergenic |
| GCGGTGCAAACATCAACTAA+GGG | 0.648232 | 6.3:+82743522 | None:intergenic |
| ATAGCAAAGGAAATGCATGT+TGG | 0.648481 | 6.3:-82742581 | MS.gene66407:CDS |
| TACAACTAATGATTGGTCTG+AGG | 0.651844 | 6.3:-82739296 | MS.gene66407:CDS |
| GCAGGTTGTAGGATCGCCTG+AGG | 0.653494 | 6.3:-82736818 | MS.gene66407:intron |
| GTGTGATTACCTCTATACCT+TGG | 0.653814 | 6.3:-82737208 | MS.gene66407:CDS |
| GAATCTATCATTTCAGATGG+AGG | 0.659548 | 6.3:+82742894 | None:intergenic |
| GGAGATTGAGAAAACATCAG+AGG | 0.660043 | 6.3:-82739272 | MS.gene66407:CDS |
| ATGATCCCGAATTTAAGCTG+AGG | 0.661448 | 6.3:-82741168 | MS.gene66407:CDS |
| GATGTTAGTGAAACAGCCAT+CGG | 0.662294 | 6.3:-82741871 | MS.gene66407:CDS |
| ATCAGAGGCAATTGGTTACG+GGG | 0.665874 | 6.3:-82739257 | MS.gene66407:CDS |
| TAGTAGGGCTGAGTTTGACA+AGG | 0.670631 | 6.3:-82740989 | MS.gene66407:CDS |
| TCATATACTACAATTTCCTG+AGG | 0.673818 | 6.3:-82737449 | MS.gene66407:intron |
| AAAACTGCCCTTCTTGAACG+TGG | 0.679246 | 6.3:-82739445 | MS.gene66407:intron |
| TTATACCTGTCCAATAGCAG+GGG | 0.687064 | 6.3:+82743260 | None:intergenic |
| GGATTGGTGGAAGATAGTGA+TGG | 0.696144 | 6.3:-82740271 | MS.gene66407:CDS |
| ACGTCTTGGAGTTCAACTGG+AGG | 0.701002 | 6.3:-82740959 | MS.gene66407:CDS |
| ATTGCTGTGAAAAGAGATGG+TGG | 0.705312 | 6.3:-82740208 | MS.gene66407:CDS |
| TATACCTGTCCAATAGCAGG+GGG | 0.719296 | 6.3:+82743261 | None:intergenic |
| ATTTAGGAGTCGGAGCAGTG+AGG | 0.728341 | 6.3:-82739512 | MS.gene66407:CDS |
| CTATAATCCATATATCCCCG+GGG | 0.746058 | 6.3:-82740317 | MS.gene66407:CDS |
| CCAGCTTCTCAATAACCCCG+GGG | 0.768970 | 6.3:+82740302 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 82736726 | 82746690 | 82736726 | ID=MS.gene66407 |
| chr6.3 | mRNA | 82736726 | 82746690 | 82736726 | ID=MS.gene66407.t1;Parent=MS.gene66407 |
| chr6.3 | exon | 82746682 | 82746690 | 82746682 | ID=MS.gene66407.t1.exon1;Parent=MS.gene66407.t1 |
| chr6.3 | CDS | 82746682 | 82746690 | 82746682 | ID=cds.MS.gene66407.t1;Parent=MS.gene66407.t1 |
| chr6.3 | exon | 82746239 | 82746358 | 82746239 | ID=MS.gene66407.t1.exon2;Parent=MS.gene66407.t1 |
| chr6.3 | CDS | 82746239 | 82746358 | 82746239 | ID=cds.MS.gene66407.t1;Parent=MS.gene66407.t1 |
| chr6.3 | exon | 82743486 | 82743637 | 82743486 | ID=MS.gene66407.t1.exon3;Parent=MS.gene66407.t1 |
| chr6.3 | CDS | 82743486 | 82743637 | 82743486 | ID=cds.MS.gene66407.t1;Parent=MS.gene66407.t1 |
| chr6.3 | exon | 82743266 | 82743341 | 82743266 | ID=MS.gene66407.t1.exon4;Parent=MS.gene66407.t1 |
| chr6.3 | CDS | 82743266 | 82743341 | 82743266 | ID=cds.MS.gene66407.t1;Parent=MS.gene66407.t1 |
| chr6.3 | exon | 82742833 | 82742934 | 82742833 | ID=MS.gene66407.t1.exon5;Parent=MS.gene66407.t1 |
| chr6.3 | CDS | 82742833 | 82742934 | 82742833 | ID=cds.MS.gene66407.t1;Parent=MS.gene66407.t1 |
| chr6.3 | exon | 82742475 | 82742693 | 82742475 | ID=MS.gene66407.t1.exon6;Parent=MS.gene66407.t1 |
| chr6.3 | CDS | 82742475 | 82742693 | 82742475 | ID=cds.MS.gene66407.t1;Parent=MS.gene66407.t1 |
| chr6.3 | exon | 82741861 | 82741941 | 82741861 | ID=MS.gene66407.t1.exon7;Parent=MS.gene66407.t1 |
| chr6.3 | CDS | 82741861 | 82741941 | 82741861 | ID=cds.MS.gene66407.t1;Parent=MS.gene66407.t1 |
| chr6.3 | exon | 82741141 | 82741224 | 82741141 | ID=MS.gene66407.t1.exon8;Parent=MS.gene66407.t1 |
| chr6.3 | CDS | 82741141 | 82741224 | 82741141 | ID=cds.MS.gene66407.t1;Parent=MS.gene66407.t1 |
| chr6.3 | exon | 82740954 | 82741058 | 82740954 | ID=MS.gene66407.t1.exon9;Parent=MS.gene66407.t1 |
| chr6.3 | CDS | 82740954 | 82741058 | 82740954 | ID=cds.MS.gene66407.t1;Parent=MS.gene66407.t1 |
| chr6.3 | exon | 82740172 | 82740350 | 82740172 | ID=MS.gene66407.t1.exon10;Parent=MS.gene66407.t1 |
| chr6.3 | CDS | 82740172 | 82740350 | 82740172 | ID=cds.MS.gene66407.t1;Parent=MS.gene66407.t1 |
| chr6.3 | exon | 82739928 | 82740012 | 82739928 | ID=MS.gene66407.t1.exon11;Parent=MS.gene66407.t1 |
| chr6.3 | CDS | 82739928 | 82740012 | 82739928 | ID=cds.MS.gene66407.t1;Parent=MS.gene66407.t1 |
| chr6.3 | exon | 82739446 | 82739632 | 82739446 | ID=MS.gene66407.t1.exon12;Parent=MS.gene66407.t1 |
| chr6.3 | CDS | 82739446 | 82739632 | 82739446 | ID=cds.MS.gene66407.t1;Parent=MS.gene66407.t1 |
| chr6.3 | exon | 82739250 | 82739319 | 82739250 | ID=MS.gene66407.t1.exon13;Parent=MS.gene66407.t1 |
| chr6.3 | CDS | 82739250 | 82739319 | 82739250 | ID=cds.MS.gene66407.t1;Parent=MS.gene66407.t1 |
| chr6.3 | exon | 82739024 | 82739093 | 82739024 | ID=MS.gene66407.t1.exon14;Parent=MS.gene66407.t1 |
| chr6.3 | CDS | 82739024 | 82739093 | 82739024 | ID=cds.MS.gene66407.t1;Parent=MS.gene66407.t1 |
| chr6.3 | exon | 82737804 | 82737893 | 82737804 | ID=MS.gene66407.t1.exon15;Parent=MS.gene66407.t1 |
| chr6.3 | CDS | 82737804 | 82737893 | 82737804 | ID=cds.MS.gene66407.t1;Parent=MS.gene66407.t1 |
| chr6.3 | exon | 82737450 | 82737518 | 82737450 | ID=MS.gene66407.t1.exon16;Parent=MS.gene66407.t1 |
| chr6.3 | CDS | 82737450 | 82737518 | 82737450 | ID=cds.MS.gene66407.t1;Parent=MS.gene66407.t1 |
| chr6.3 | exon | 82737170 | 82737271 | 82737170 | ID=MS.gene66407.t1.exon17;Parent=MS.gene66407.t1 |
| chr6.3 | CDS | 82737170 | 82737271 | 82737170 | ID=cds.MS.gene66407.t1;Parent=MS.gene66407.t1 |
| chr6.3 | exon | 82736726 | 82736836 | 82736726 | ID=MS.gene66407.t1.exon18;Parent=MS.gene66407.t1 |
| chr6.3 | CDS | 82736726 | 82736836 | 82736726 | ID=cds.MS.gene66407.t1;Parent=MS.gene66407.t1 |
| Gene Sequence |
| Protein sequence |
