Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68987.t1 | XP_013453115.1 | 90.6 | 244 | 22 | 1 | 1 | 243 | 78 | 321 | 4.80E-117 | 430.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68987.t1 | Q8S3D1 | 64.9 | 194 | 56 | 5 | 64 | 245 | 213 | 406 | 1.0e-59 | 231.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68987.t1 | I3S6F8 | 90.6 | 244 | 22 | 1 | 1 | 243 | 78 | 321 | 3.4e-117 | 430.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene68987 | 0.810592 | 1.07E-50 | -1.69E-46 |
| MS.gene049153 | MS.gene68987 | 0.819607 | 1.06E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene68987 | 0.811596 | 6.47E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene68987 | 0.829018 | 6.51E-55 | -1.69E-46 |
| MS.gene050227 | MS.gene68987 | 0.820231 | 7.65E-53 | -1.69E-46 |
| MS.gene050228 | MS.gene68987 | 0.827134 | 1.85E-54 | -1.69E-46 |
| MS.gene050442 | MS.gene68987 | 0.811959 | 5.39E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene68987 | -0.827668 | 1.38E-54 | -1.69E-46 |
| MS.gene050642 | MS.gene68987 | 0.804971 | 1.67E-49 | -1.69E-46 |
| MS.gene050680 | MS.gene68987 | 0.808647 | 2.79E-50 | -1.69E-46 |
| MS.gene050762 | MS.gene68987 | 0.808831 | 2.55E-50 | -1.69E-46 |
| MS.gene050763 | MS.gene68987 | 0.811952 | 5.41E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene68987 | 0.845161 | 4.83E-59 | -1.69E-46 |
| MS.gene051983 | MS.gene68987 | 0.827674 | 1.37E-54 | -1.69E-46 |
| MS.gene052011 | MS.gene68987 | -0.800398 | 1.47E-48 | -1.69E-46 |
| MS.gene052077 | MS.gene68987 | 0.817777 | 2.77E-52 | -1.69E-46 |
| MS.gene052333 | MS.gene68987 | 0.800147 | 1.65E-48 | -1.69E-46 |
| MS.gene052426 | MS.gene68987 | 0.820422 | 6.92E-53 | -1.69E-46 |
| MS.gene05288 | MS.gene68987 | 0.821473 | 3.96E-53 | -1.69E-46 |
| MS.gene053166 | MS.gene68987 | 0.800412 | 1.46E-48 | -1.69E-46 |
| MS.gene053494 | MS.gene68987 | 0.83711 | 6.31E-57 | -1.69E-46 |
| MS.gene053584 | MS.gene68987 | 0.812516 | 4.08E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene68987 | 0.820214 | 7.72E-53 | -1.69E-46 |
| MS.gene054379 | MS.gene68987 | 0.81642 | 5.58E-52 | -1.69E-46 |
| MS.gene054468 | MS.gene68987 | 0.813842 | 2.09E-51 | -1.69E-46 |
| MS.gene054559 | MS.gene68987 | 0.806303 | 8.78E-50 | -1.69E-46 |
| MS.gene05510 | MS.gene68987 | 0.828937 | 6.81E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene68987 | 0.866496 | 2.73E-65 | -1.69E-46 |
| MS.gene056447 | MS.gene68987 | 0.838125 | 3.46E-57 | -1.69E-46 |
| MS.gene056506 | MS.gene68987 | 0.803578 | 3.26E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene68987 | 0.826785 | 2.24E-54 | -1.69E-46 |
| MS.gene05761 | MS.gene68987 | 0.805865 | 1.09E-49 | -1.69E-46 |
| MS.gene058146 | MS.gene68987 | 0.800322 | 1.52E-48 | -1.69E-46 |
| MS.gene058435 | MS.gene68987 | 0.803238 | 3.83E-49 | -1.69E-46 |
| MS.gene059161 | MS.gene68987 | 0.805429 | 1.34E-49 | -1.69E-46 |
| MS.gene059609 | MS.gene68987 | 0.900136 | 9.91E-78 | -1.69E-46 |
| MS.gene05984 | MS.gene68987 | 0.800419 | 1.45E-48 | -1.69E-46 |
| MS.gene060322 | MS.gene68987 | 0.813137 | 2.98E-51 | -1.69E-46 |
| MS.gene060683 | MS.gene68987 | 0.8132 | 2.89E-51 | -1.69E-46 |
| MS.gene060685 | MS.gene68987 | 0.812184 | 4.82E-51 | -1.69E-46 |
| MS.gene060802 | MS.gene68987 | 0.844476 | 7.39E-59 | -1.69E-46 |
| MS.gene060803 | MS.gene68987 | 0.8276 | 1.43E-54 | -1.69E-46 |
| MS.gene060942 | MS.gene68987 | 0.816314 | 5.89E-52 | -1.69E-46 |
| MS.gene060998 | MS.gene68987 | 0.806849 | 6.73E-50 | -1.69E-46 |
| MS.gene061002 | MS.gene68987 | 0.812547 | 4.01E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 67 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACAGCTCCTAAATGAAAA+TGG | 0.255266 | 6.3:-81344532 | MS.gene68987:intron |
| CTACTCTTTAGGTCCTTCTT+TGG | 0.274553 | 6.3:+81344186 | None:intergenic |
| ATGACAATGGAGCTGATTAT+TGG | 0.285895 | 6.3:-81344119 | MS.gene68987:CDS |
| CATCAGCTTGTTTCCCCATT+TGG | 0.289480 | 6.3:-81347093 | MS.gene68987:CDS |
| ATTACCTGACCAGGGTCTTC+AGG | 0.299545 | 6.3:+81344758 | None:intergenic |
| CCTGATCCATTGTCCAAGTA+TGG | 0.317233 | 6.3:+81346070 | None:intergenic |
| GGCTCTTAGCTTACCATACT+TGG | 0.320593 | 6.3:-81346083 | MS.gene68987:CDS |
| TGGTTATATCAGATTCCTTC+AGG | 0.336279 | 6.3:-81346262 | MS.gene68987:CDS |
| CAGGTTAGGAAGGAGAAGTT+AGG | 0.364935 | 6.3:-81347135 | MS.gene68987:CDS |
| TCTGTCTTGTTAGAAGCTAT+TGG | 0.377963 | 6.3:-81346282 | MS.gene68987:CDS |
| AATTAATTACCTTTCCAAAT+GGG | 0.386503 | 6.3:+81347079 | None:intergenic |
| ACATCAACAAGAGAAGCATT+TGG | 0.400442 | 6.3:+81348282 | None:intergenic |
| ACTTGTAGTGTACATGATAC+TGG | 0.401193 | 6.3:+81344147 | None:intergenic |
| TGACAATGGAGCTGATTATT+GGG | 0.408868 | 6.3:-81344118 | MS.gene68987:CDS |
| CCCTAGGAGGAGGAGGCTTT+CGG | 0.409114 | 6.3:-81344089 | MS.gene68987:CDS |
| TACAACTCAAACTACTTTCA+AGG | 0.412851 | 6.3:-81347424 | MS.gene68987:intron |
| TTTAATCTTAATTAGGTTCA+AGG | 0.413424 | 6.3:-81344800 | MS.gene68987:intron |
| GACACAACCCTCTACTCTTT+AGG | 0.414717 | 6.3:+81344175 | None:intergenic |
| TAATTAATTACCTTTCCAAA+TGG | 0.416474 | 6.3:+81347078 | None:intergenic |
| AATTGAAGGGGTGGAATTGT+GGG | 0.425149 | 6.3:-81348363 | None:intergenic |
| TAATTGAAGGGGTGGAATTG+TGG | 0.447002 | 6.3:-81348364 | None:intergenic |
| GCACCTGCCCTAGGAGGAGG+AGG | 0.461982 | 6.3:-81344096 | MS.gene68987:CDS |
| AAACACAAGGCAACAACATC+CGG | 0.472522 | 6.3:-81346047 | MS.gene68987:intron |
| TTACCTGACCAGGGTCTTCA+GGG | 0.475060 | 6.3:+81344759 | None:intergenic |
| ACCGAAAGCCTCCTCCTCCT+AGG | 0.478830 | 6.3:+81344088 | None:intergenic |
| ATTAATTACCTTTCCAAATG+GGG | 0.483813 | 6.3:+81347080 | None:intergenic |
| AAGAAGGACCTAAAGAGTAG+AGG | 0.491449 | 6.3:-81344183 | MS.gene68987:CDS |
| ATTCCTTCAGGCTCAAATTG+AGG | 0.494505 | 6.3:-81346250 | MS.gene68987:intron |
| AAGTGCAACAGTACTACATC+TGG | 0.495170 | 6.3:-81347480 | MS.gene68987:CDS |
| CCATACTTGGACAATGGATC+AGG | 0.498280 | 6.3:-81346070 | MS.gene68987:CDS |
| TCAGGAAATAGCTATGCATA+TGG | 0.501689 | 6.3:-81348246 | MS.gene68987:CDS |
| ATTCCCTGAAGACCCTGGTC+AGG | 0.501966 | 6.3:-81344762 | MS.gene68987:intron |
| AGCTTACCATACTTGGACAA+TGG | 0.504007 | 6.3:-81346076 | MS.gene68987:CDS |
| TTCTCAATTTCAGGTTAGGA+AGG | 0.504978 | 6.3:-81347145 | MS.gene68987:intron |
| GATTATTGGGCACCTGCCCT+AGG | 0.505746 | 6.3:-81344105 | MS.gene68987:CDS |
| TTTCAACAACAACAACATGT+TGG | 0.505959 | 6.3:-81348187 | MS.gene68987:CDS |
| AGAAGGACCTAAAGAGTAGA+GGG | 0.506332 | 6.3:-81344182 | MS.gene68987:CDS |
| ATGGGGAAACAAGCTGATGA+AGG | 0.508848 | 6.3:+81347097 | None:intergenic |
| AAGGGGTGGAATTGTGGGAG+AGG | 0.513254 | 6.3:-81348358 | MS.gene68987:CDS |
| TGGGCACCTGCCCTAGGAGG+AGG | 0.520166 | 6.3:-81344099 | MS.gene68987:CDS |
| GTGGGAGAGGAAGATAAGAT+TGG | 0.524644 | 6.3:-81348345 | MS.gene68987:CDS |
| TATCATGTACACTACAAGTT+GGG | 0.530955 | 6.3:-81344143 | MS.gene68987:CDS |
| ATCCAAAGGATTACCTGACC+AGG | 0.531475 | 6.3:+81344749 | None:intergenic |
| GATGTTAAACAAGAAAGCTC+AGG | 0.533379 | 6.3:-81348264 | MS.gene68987:CDS |
| AAGCCTCCTCCTCCTAGGGC+AGG | 0.533559 | 6.3:+81344093 | None:intergenic |
| TTCTCAAGAAGAACCAAAGA+AGG | 0.544458 | 6.3:-81344199 | MS.gene68987:CDS |
| CCGAAAGCCTCCTCCTCCTA+GGG | 0.547448 | 6.3:+81344089 | None:intergenic |
| GAAGAGGAAAGCAGCTGAAG+AGG | 0.554156 | 6.3:-81344506 | MS.gene68987:intron |
| TGCAACAGTACTACATCTGG+TGG | 0.567465 | 6.3:-81347477 | MS.gene68987:CDS |
| GCTTGTTTCCCCATTTGGAA+AGG | 0.570374 | 6.3:-81347088 | MS.gene68987:intron |
| TGTTTATTCCCTGAAGACCC+TGG | 0.579599 | 6.3:-81344767 | MS.gene68987:CDS |
| TCACCTCAATTTGAGCCTGA+AGG | 0.591976 | 6.3:+81346247 | None:intergenic |
| TAAATGAAAATGGTTTGAAG+AGG | 0.595062 | 6.3:-81344522 | MS.gene68987:CDS |
| GTATCATGTACACTACAAGT+TGG | 0.599973 | 6.3:-81344144 | MS.gene68987:CDS |
| TGGGGAAACAAGCTGATGAA+GGG | 0.608733 | 6.3:+81347098 | None:intergenic |
| GCAACAGTACTACATCTGGT+GGG | 0.617876 | 6.3:-81347476 | MS.gene68987:CDS |
| TATTGGGCACCTGCCCTAGG+AGG | 0.619502 | 6.3:-81344102 | MS.gene68987:CDS |
| AATAGCTATGCATATGGACA+TGG | 0.627229 | 6.3:-81348240 | MS.gene68987:CDS |
| ACCTCAGAAGATCGATCTAG+TGG | 0.628411 | 6.3:+81348123 | None:intergenic |
| CAACAGTACTACATCTGGTG+GGG | 0.629134 | 6.3:-81347475 | MS.gene68987:CDS |
| CTACAAGTTGGGAATGACAA+TGG | 0.634609 | 6.3:-81344132 | MS.gene68987:CDS |
| ACCACTAGATCGATCTTCTG+AGG | 0.634967 | 6.3:-81348124 | MS.gene68987:intron |
| TCAGAAGATCGATCTAGTGG+TGG | 0.660060 | 6.3:+81348126 | None:intergenic |
| TCCAAAGGATTACCTGACCA+GGG | 0.669498 | 6.3:+81344750 | None:intergenic |
| ACAATAGTAATATAGATGTG+AGG | 0.676915 | 6.3:-81348152 | MS.gene68987:CDS |
| AATAGCTTCTAACAAGACAG+AGG | 0.708748 | 6.3:+81346284 | None:intergenic |
| ACAATGGATCAGGAAACACA+AGG | 0.752248 | 6.3:-81346060 | MS.gene68987:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTGTTATAAATTAAAG+TGG | - | chr6.3:81345532-81345551 | MS.gene68987:intron | 10.0% |
| !! | GTAATTATTTAATCTTAATT+AGG | - | chr6.3:81347634-81347653 | MS.gene68987:intron | 10.0% |
| !!! | CTTTTATAAAAAAGATTAAA+GGG | + | chr6.3:81347039-81347058 | None:intergenic | 10.0% |
| !!! | TAGTTTATAACTTTTTATTT+GGG | + | chr6.3:81346850-81346869 | None:intergenic | 10.0% |
| !!! | TCTTTTATAAAAAAGATTAA+AGG | + | chr6.3:81347040-81347059 | None:intergenic | 10.0% |
| !!! | TTAGTTTATAACTTTTTATT+TGG | + | chr6.3:81346851-81346870 | None:intergenic | 10.0% |
| !!! | TTGCATATATAATTTTATAT+TGG | + | chr6.3:81344568-81344587 | None:intergenic | 10.0% |
| !! | AATTTCTTATTGAATAAACT+AGG | + | chr6.3:81345391-81345410 | None:intergenic | 15.0% |
| !! | ATACATATATTGTTAATTAG+AGG | - | chr6.3:81346985-81347004 | MS.gene68987:intron | 15.0% |
| !! | ATATATGAATAATCAAAACA+AGG | - | chr6.3:81347771-81347790 | MS.gene68987:intron | 15.0% |
| !! | CATTTAATAAATTATGTATG+TGG | - | chr6.3:81346593-81346612 | MS.gene68987:intron | 15.0% |
| !! | GCTTCAAAAAAAAAAAAAAT+TGG | + | chr6.3:81346895-81346914 | None:intergenic | 15.0% |
| !! | TAATTAAATATTGTAAAGCA+TGG | + | chr6.3:81344527-81344546 | None:intergenic | 15.0% |
| !! | TACATATATTGTTAATTAGA+GGG | - | chr6.3:81346986-81347005 | MS.gene68987:intron | 15.0% |
| !! | TATATGAATAATCAAAACAA+GGG | - | chr6.3:81347772-81347791 | MS.gene68987:intron | 15.0% |
| !! | TGACTTTATAAAAAAAAAAC+CGG | - | chr6.3:81347124-81347143 | MS.gene68987:CDS | 15.0% |
| !! | TTTGAATATAAATAACCAAA+TGG | - | chr6.3:81347286-81347305 | MS.gene68987:intron | 15.0% |
| !!! | TAAGAAATTTTTCACTTTTT+TGG | + | chr6.3:81346657-81346676 | None:intergenic | 15.0% |
| !!! | TTATATGCTTTTTAATAGAA+AGG | - | chr6.3:81345413-81345432 | MS.gene68987:intron | 15.0% |
| !!! | TTTTGGTCTATAATTTTTAT+TGG | + | chr6.3:81348053-81348072 | None:intergenic | 15.0% |
| !! | AAAAATTTCTTCATGTATTG+TGG | - | chr6.3:81344672-81344691 | MS.gene68987:intron | 20.0% |
| !! | AAAATTTCTTCATGTATTGT+GGG | - | chr6.3:81344673-81344692 | MS.gene68987:intron | 20.0% |
| !! | AACAATTATCATGGATAATA+TGG | - | chr6.3:81347226-81347245 | MS.gene68987:intron | 20.0% |
| !! | AAGATCAAATATATCAATCT+TGG | - | chr6.3:81347100-81347119 | MS.gene68987:CDS | 20.0% |
| !! | AATTAATTACCTTTCCAAAT+GGG | + | chr6.3:81345365-81345384 | None:intergenic | 20.0% |
| !! | ATATGAATAATCAAAACAAG+GGG | - | chr6.3:81347773-81347792 | MS.gene68987:intron | 20.0% |
| !! | ATTGCATTATATATAGAAAG+TGG | - | chr6.3:81346080-81346099 | MS.gene68987:CDS | 20.0% |
| !! | TAATTAATTACCTTTCCAAA+TGG | + | chr6.3:81345366-81345385 | None:intergenic | 20.0% |
| !! | TGTAGTAGCAAATAAATTAA+AGG | + | chr6.3:81345880-81345899 | None:intergenic | 20.0% |
| !! | TTTAATCTTAATTAGGTTCA+AGG | - | chr6.3:81347641-81347660 | MS.gene68987:intron | 20.0% |
| !!! | AAATTTCTTACATTTGAGAT+CGG | - | chr6.3:81346667-81346686 | MS.gene68987:intron | 20.0% |
| !!! | AATTTTTTCTCTAATAGTGA+TGG | + | chr6.3:81345638-81345657 | None:intergenic | 20.0% |
| !!! | AGAAGTATTACTTTAAAAAC+TGG | - | chr6.3:81347148-81347167 | MS.gene68987:intron | 20.0% |
| !!! | ATGACAAGTAATTTTTTTGA+GGG | + | chr6.3:81346455-81346474 | None:intergenic | 20.0% |
| !!! | CTATATTTTGTTGTTGTATT+AGG | + | chr6.3:81345227-81345246 | None:intergenic | 20.0% |
| !!! | TATGACAAGTAATTTTTTTG+AGG | + | chr6.3:81346456-81346475 | None:intergenic | 20.0% |
| !!! | TCATATTACCTTTTTTTTCT+TGG | - | chr6.3:81344429-81344448 | MS.gene68987:intron | 20.0% |
| !!! | TGGAATATGACAATTATTTT+AGG | - | chr6.3:81347168-81347187 | MS.gene68987:intron | 20.0% |
| !!! | TTAGCATTTGATTTTGAAAT+TGG | + | chr6.3:81344128-81344147 | None:intergenic | 20.0% |
| !!! | TTTTAAAGTAATACTTCTTC+CGG | + | chr6.3:81347146-81347165 | None:intergenic | 20.0% |
| !!! | TTTTTAGCTTGAAATCATAA+GGG | - | chr6.3:81344614-81344633 | MS.gene68987:intron | 20.0% |
| !!! | TTTTTTAGCTTGAAATCATA+AGG | - | chr6.3:81344613-81344632 | MS.gene68987:intron | 20.0% |
| ! | AAATTAAAGGATCGTGTTAA+CGG | + | chr6.3:81345867-81345886 | None:intergenic | 25.0% |
| ! | AAATTTCTTCATGTATTGTG+GGG | - | chr6.3:81344674-81344693 | MS.gene68987:intron | 25.0% |
| ! | ACAATAGTAATATAGATGTG+AGG | - | chr6.3:81344289-81344308 | MS.gene68987:intron | 25.0% |
| ! | AGATAGTTACAATTGAGAAT+TGG | + | chr6.3:81345149-81345168 | None:intergenic | 25.0% |
| ! | ATTAATTACCTTTCCAAATG+GGG | + | chr6.3:81345364-81345383 | None:intergenic | 25.0% |
| ! | ATTATATATGCAATCGTGAA+AGG | - | chr6.3:81344575-81344594 | MS.gene68987:intron | 25.0% |
| ! | CATTCAACAAATGATTTATG+TGG | + | chr6.3:81346632-81346651 | None:intergenic | 25.0% |
| ! | CTAGTTTATGGATAATTATG+TGG | - | chr6.3:81347592-81347611 | MS.gene68987:intron | 25.0% |
| ! | GAAAAAAAGCTTCTTCATTA+AGG | - | chr6.3:81344381-81344400 | MS.gene68987:intron | 25.0% |
| ! | GAATCGAACAAATGAATAAT+TGG | + | chr6.3:81346928-81346947 | None:intergenic | 25.0% |
| ! | GATTTCAAGCTAAAAAAGAT+TGG | + | chr6.3:81344610-81344629 | None:intergenic | 25.0% |
| ! | TAAATGAAAATGGTTTGAAG+AGG | - | chr6.3:81347919-81347938 | MS.gene68987:intron | 25.0% |
| ! | TAAGTAAAGTCAATCGAAAA+TGG | + | chr6.3:81346768-81346787 | None:intergenic | 25.0% |
| ! | TATTAAAAATCTGCTAAAGC+TGG | + | chr6.3:81347743-81347762 | None:intergenic | 25.0% |
| ! | TGCAAATACAACAATTATCA+TGG | - | chr6.3:81347217-81347236 | MS.gene68987:intron | 25.0% |
| ! | TTGACCATATTAATTCTTAC+CGG | + | chr6.3:81346416-81346435 | None:intergenic | 25.0% |
| ! | TTGTAGAATGAAAGAAATCT+TGG | + | chr6.3:81344943-81344962 | None:intergenic | 25.0% |
| ! | TTGTTATGTGAAATGTGAAA+TGG | + | chr6.3:81346283-81346302 | None:intergenic | 25.0% |
| !! | TCTTCAAACCATTTTCATTT+AGG | + | chr6.3:81347920-81347939 | None:intergenic | 25.0% |
| !! | TGTTAATTAGAGGGTATAAA+TGG | - | chr6.3:81346995-81347014 | MS.gene68987:intron | 25.0% |
| !!! | AAACCCCTTCTTTTTTTTTA+GGG | + | chr6.3:81347802-81347821 | None:intergenic | 25.0% |
| !!! | ACATTTCTCTTTAGTTCTAA+TGG | + | chr6.3:81347718-81347737 | None:intergenic | 25.0% |
| !!! | ATTCCACTTTTCAGATAAAA+GGG | + | chr6.3:81346820-81346839 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTGTTCCCTATTT+TGG | + | chr6.3:81345504-81345523 | None:intergenic | 25.0% |
| !!! | TTGTTTAAAGGTGCTAATAT+TGG | + | chr6.3:81344499-81344518 | None:intergenic | 25.0% |
| !!! | TTTCTGCATGATATTTTAGA+GGG | - | chr6.3:81346035-81346054 | MS.gene68987:intron | 25.0% |
| !!! | TTTTAGCTTGAAATCATAAG+GGG | - | chr6.3:81344615-81344634 | MS.gene68987:intron | 25.0% |
| !!! | TTTTCTGCATGATATTTTAG+AGG | - | chr6.3:81346034-81346053 | MS.gene68987:intron | 25.0% |
| AAACATACAAATACCATGTG+GGG | - | chr6.3:81345097-81345116 | MS.gene68987:intron | 30.0% | |
| AAATTTCATGCTTAGCCATT+TGG | + | chr6.3:81347304-81347323 | None:intergenic | 30.0% | |
| AAGATATCATGAAAACGTGT+AGG | + | chr6.3:81345275-81345294 | None:intergenic | 30.0% | |
| AATTAAAGGATCGTGTTAAC+GGG | + | chr6.3:81345866-81345885 | None:intergenic | 30.0% | |
| ACAAACATACAAATACCATG+TGG | - | chr6.3:81345095-81345114 | MS.gene68987:intron | 30.0% | |
| ACATCCGGTAAGAATTAATA+TGG | - | chr6.3:81346409-81346428 | MS.gene68987:intron | 30.0% | |
| AGCATGGTAAAGTTGTTTAA+AGG | + | chr6.3:81344511-81344530 | None:intergenic | 30.0% | |
| ATAATTCCAAGAGAGGAAAA+AGG | + | chr6.3:81346335-81346354 | None:intergenic | 30.0% | |
| ATATATAGAAAGTGGTGACT+AGG | - | chr6.3:81346088-81346107 | MS.gene68987:intron | 30.0% | |
| ATCAGAGTTCAATTCTTAGA+TGG | - | chr6.3:81346740-81346759 | MS.gene68987:intron | 30.0% | |
| ATTCATAAAAAGTCTAGCCA+TGG | + | chr6.3:81344409-81344428 | None:intergenic | 30.0% | |
| CAAACATACAAATACCATGT+GGG | - | chr6.3:81345096-81345115 | MS.gene68987:intron | 30.0% | |
| CATGTTGGCAATAACTAATT+AGG | - | chr6.3:81348218-81348237 | MS.gene68987:CDS | 30.0% | |
| CTCATTGACCAAGAAAAAAA+AGG | + | chr6.3:81344440-81344459 | None:intergenic | 30.0% | |
| CTTCCCTAAAAAAAAAGAAG+GGG | - | chr6.3:81347796-81347815 | MS.gene68987:intron | 30.0% | |
| GATATCTTGTTCTCAATTTC+AGG | - | chr6.3:81345287-81345306 | MS.gene68987:intron | 30.0% | |
| GCTTCCCTAAAAAAAAAGAA+GGG | - | chr6.3:81347795-81347814 | MS.gene68987:intron | 30.0% | |
| TACAACTCAAACTACTTTCA+AGG | - | chr6.3:81345017-81345036 | MS.gene68987:intron | 30.0% | |
| TATCATGTACACTACAAGTT+GGG | - | chr6.3:81348298-81348317 | MS.gene68987:CDS | 30.0% | |
| TTACAGCTCCTAAATGAAAA+TGG | - | chr6.3:81347909-81347928 | MS.gene68987:intron | 30.0% | |
| TTGCTGATGAAAATTAGACT+TGG | + | chr6.3:81348127-81348146 | None:intergenic | 30.0% | |
| TTTCAACAACAACAACATGT+TGG | - | chr6.3:81344254-81344273 | MS.gene68987:intron | 30.0% | |
| ! | AAGTTTCTTACATTTGAGAC+CGG | + | chr6.3:81346558-81346577 | None:intergenic | 30.0% |
| ! | TTTATTTGCTACTACATTCG+AGG | - | chr6.3:81345884-81345903 | MS.gene68987:intron | 30.0% |
| !! | CATTCCACTTTTCAGATAAA+AGG | + | chr6.3:81346821-81346840 | None:intergenic | 30.0% |
| !! | CTTATGTGTCTTTTTCATGT+TGG | - | chr6.3:81348203-81348222 | MS.gene68987:CDS | 30.0% |
| !! | TTCCCTATTTTGGATTTAGT+GGG | + | chr6.3:81345494-81345513 | None:intergenic | 30.0% |
| !! | TTCTGCATGATATTTTAGAG+GGG | - | chr6.3:81346036-81346055 | MS.gene68987:intron | 30.0% |
| !! | TTTAGCTTGAAATCATAAGG+GGG | - | chr6.3:81344616-81344635 | MS.gene68987:intron | 30.0% |
| !! | TTTAGTTCTAATGGATCCAA+AGG | + | chr6.3:81347709-81347728 | None:intergenic | 30.0% |
| !!! | CAAACCCCTTCTTTTTTTTT+AGG | + | chr6.3:81347803-81347822 | None:intergenic | 30.0% |
| AAAATGATATCGAGTGCTCT+TGG | - | chr6.3:81345705-81345724 | MS.gene68987:intron | 35.0% | |
| AAATGATATCGAGTGCTCTT+GGG | - | chr6.3:81345706-81345725 | MS.gene68987:intron | 35.0% | |
| AAGTGCACATGCTAAAAAGT+TGG | + | chr6.3:81345250-81345269 | None:intergenic | 35.0% | |
| AATAGCTATGCATATGGACA+TGG | - | chr6.3:81344201-81344220 | MS.gene68987:CDS | 35.0% | |
| AATAGCTTCTAACAAGACAG+AGG | + | chr6.3:81346160-81346179 | None:intergenic | 35.0% | |
| ACTTGTAGTGTACATGATAC+TGG | + | chr6.3:81348297-81348316 | None:intergenic | 35.0% | |
| AGGTATAATGCAAACTTCCA+TGG | - | chr6.3:81345037-81345056 | MS.gene68987:intron | 35.0% | |
| ATCCCCACTAAATCCAAAAT+AGG | - | chr6.3:81345488-81345507 | MS.gene68987:intron | 35.0% | |
| ATGAAAGAGAGTTAAGGAGT+TGG | + | chr6.3:81345071-81345090 | None:intergenic | 35.0% | |
| ATGACAATGGAGCTGATTAT+TGG | - | chr6.3:81348322-81348341 | MS.gene68987:CDS | 35.0% | |
| CTGATGAAAATTAGACTTGG+AGG | + | chr6.3:81348124-81348143 | None:intergenic | 35.0% | |
| GATGTTAAACAAGAAAGCTC+AGG | - | chr6.3:81344177-81344196 | MS.gene68987:CDS | 35.0% | |
| GGAGTAACTATTGTCTTTCT+TGG | - | chr6.3:81345118-81345137 | MS.gene68987:intron | 35.0% | |
| GGCTTCCCTAAAAAAAAAGA+AGG | - | chr6.3:81347794-81347813 | MS.gene68987:intron | 35.0% | |
| GTATCATGTACACTACAAGT+TGG | - | chr6.3:81348297-81348316 | MS.gene68987:CDS | 35.0% | |
| GTATGCATGAAAGAGAGTTA+AGG | + | chr6.3:81345077-81345096 | None:intergenic | 35.0% | |
| TCACTAAATAATACTCCCTC+CGG | - | chr6.3:81346536-81346555 | MS.gene68987:intron | 35.0% | |
| TCAGGAAATAGCTATGCATA+TGG | - | chr6.3:81344195-81344214 | MS.gene68987:CDS | 35.0% | |
| TCCCCACTAAATCCAAAATA+GGG | - | chr6.3:81345489-81345508 | MS.gene68987:intron | 35.0% | |
| TGACAATGGAGCTGATTATT+GGG | - | chr6.3:81348323-81348342 | MS.gene68987:CDS | 35.0% | |
| TGCTTGTGTTATGGTTGTTT+GGG | + | chr6.3:81346247-81346266 | None:intergenic | 35.0% | |
| TGGTTATATCAGATTCCTTC+AGG | - | chr6.3:81346179-81346198 | MS.gene68987:intron | 35.0% | |
| TTACTAGTGCTTACTGCTTA+GGG | + | chr6.3:81345604-81345623 | None:intergenic | 35.0% | |
| TTCTCAAGAAGAACCAAAGA+AGG | - | chr6.3:81348242-81348261 | MS.gene68987:CDS | 35.0% | |
| TTTACTAGTGCTTACTGCTT+AGG | + | chr6.3:81345605-81345624 | None:intergenic | 35.0% | |
| ! | AGTGTTGAGCAAGTTATCAA+GGG | + | chr6.3:81347425-81347444 | None:intergenic | 35.0% |
| ! | GATCCCTTTTATCTGAAAAG+TGG | - | chr6.3:81346814-81346833 | MS.gene68987:intron | 35.0% |
| ! | TCTGTCTTGTTAGAAGCTAT+TGG | - | chr6.3:81346159-81346178 | MS.gene68987:intron | 35.0% |
| ! | TGCAGAAACGTACTAGTTTA+TGG | - | chr6.3:81347580-81347599 | MS.gene68987:intron | 35.0% |
| ! | TTCATTCCTTTTTCCTCTCT+TGG | - | chr6.3:81346326-81346345 | MS.gene68987:intron | 35.0% |
| ! | TTCTTACATTTGAGATCGGA+GGG | - | chr6.3:81346671-81346690 | MS.gene68987:intron | 35.0% |
| ! | TTTCTTACATTTGAGATCGG+AGG | - | chr6.3:81346670-81346689 | MS.gene68987:intron | 35.0% |
| !! | AAGTGTTGAGCAAGTTATCA+AGG | + | chr6.3:81347426-81347445 | None:intergenic | 35.0% |
| !! | ACATCAACAAGAGAAGCATT+TGG | + | chr6.3:81344162-81344181 | None:intergenic | 35.0% |
| !! | CTTGTTCTCAATTTCAGGTT+AGG | - | chr6.3:81345292-81345311 | MS.gene68987:intron | 35.0% |
| !! | GTTCCCTATTTTGGATTTAG+TGG | + | chr6.3:81345495-81345514 | None:intergenic | 35.0% |
| !! | TCATGCTCAACACTTTTTGT+AGG | - | chr6.3:81347382-81347401 | MS.gene68987:intron | 35.0% |
| !! | TCCCTATTTTGGATTTAGTG+GGG | + | chr6.3:81345493-81345512 | None:intergenic | 35.0% |
| !! | TCTGCATGATATTTTAGAGG+GGG | - | chr6.3:81346037-81346056 | MS.gene68987:intron | 35.0% |
| !! | TTCTCAATTTCAGGTTAGGA+AGG | - | chr6.3:81345296-81345315 | MS.gene68987:intron | 35.0% |
| AAACACAAGGCAACAACATC+CGG | - | chr6.3:81346394-81346413 | MS.gene68987:intron | 40.0% | |
| AAGAAGGACCTAAAGAGTAG+AGG | - | chr6.3:81348258-81348277 | MS.gene68987:CDS | 40.0% | |
| AAGTGCAACAGTACTACATC+TGG | - | chr6.3:81344961-81344980 | MS.gene68987:intron | 40.0% | |
| AATGATATCGAGTGCTCTTG+GGG | - | chr6.3:81345707-81345726 | MS.gene68987:intron | 40.0% | |
| ACAATGGATCAGGAAACACA+AGG | - | chr6.3:81346381-81346400 | MS.gene68987:intron | 40.0% | |
| AGAAGGACCTAAAGAGTAGA+GGG | - | chr6.3:81348259-81348278 | MS.gene68987:CDS | 40.0% | |
| AGCTTACCATACTTGGACAA+TGG | - | chr6.3:81346365-81346384 | MS.gene68987:intron | 40.0% | |
| ATTCCTTCAGGCTCAAATTG+AGG | - | chr6.3:81346191-81346210 | MS.gene68987:intron | 40.0% | |
| CTACTCTTTAGGTCCTTCTT+TGG | + | chr6.3:81348258-81348277 | None:intergenic | 40.0% | |
| CTAGGAATATGACAGTGGTA+TGG | - | chr6.3:81346106-81346125 | MS.gene68987:intron | 40.0% | |
| GCTTCTTCATTAAGGATCCA+TGG | - | chr6.3:81344389-81344408 | MS.gene68987:intron | 40.0% | |
| GTGCTTGTGTTATGGTTGTT+TGG | + | chr6.3:81346248-81346267 | None:intergenic | 40.0% | |
| GTGTTGAGCAAGTTATCAAG+GGG | + | chr6.3:81347424-81347443 | None:intergenic | 40.0% | |
| TGGGGCAATGAAAAAAGCTA+GGG | - | chr6.3:81344984-81345003 | MS.gene68987:intron | 40.0% | |
| TGTATTGTGGGGAAAAAGCT+TGG | - | chr6.3:81344685-81344704 | MS.gene68987:intron | 40.0% | |
| TTAACAGCGTGCTTGTGTTA+TGG | + | chr6.3:81346256-81346275 | None:intergenic | 40.0% | |
| TTCCTCTCTTGGAATTATGC+AGG | - | chr6.3:81346337-81346356 | MS.gene68987:intron | 40.0% | |
| ! | CTACAAGTTGGGAATGACAA+TGG | - | chr6.3:81348309-81348328 | MS.gene68987:CDS | 40.0% |
| ! | TTCTTACATTTGAGACCGGA+GGG | + | chr6.3:81346554-81346573 | None:intergenic | 40.0% |
| ! | TTTCTTACATTTGAGACCGG+AGG | + | chr6.3:81346555-81346574 | None:intergenic | 40.0% |
| !! | CTGCATGATATTTTAGAGGG+GGG | - | chr6.3:81346038-81346057 | MS.gene68987:intron | 40.0% |
| !! | TATTTTAGAGGGGGGGAAAA+AGG | - | chr6.3:81346046-81346065 | MS.gene68987:intron | 40.0% |
| !! | TGCATGATATTTTAGAGGGG+GGG | - | chr6.3:81346039-81346058 | MS.gene68987:intron | 40.0% |
| ACCACTAGATCGATCTTCTG+AGG | - | chr6.3:81344317-81344336 | MS.gene68987:intron | 45.0% | |
| ACCTCAGAAGATCGATCTAG+TGG | + | chr6.3:81344321-81344340 | None:intergenic | 45.0% | |
| AGCCTGCATAATTCCAAGAG+AGG | + | chr6.3:81346342-81346361 | None:intergenic | 45.0% | |
| AGGAGTTGGAAGTTTCTCCA+TGG | + | chr6.3:81345057-81345076 | None:intergenic | 45.0% | |
| ATCCAAAGGATTACCTGACC+AGG | + | chr6.3:81347695-81347714 | None:intergenic | 45.0% | |
| ATGGGGAAACAAGCTGATGA+AGG | + | chr6.3:81345347-81345366 | None:intergenic | 45.0% | |
| CAACAGTACTACATCTGGTG+GGG | - | chr6.3:81344966-81344985 | MS.gene68987:intron | 45.0% | |
| CAGGTTAGGAAGGAGAAGTT+AGG | - | chr6.3:81345306-81345325 | MS.gene68987:intron | 45.0% | |
| CCATACTTGGACAATGGATC+AGG | - | chr6.3:81346371-81346390 | MS.gene68987:intron | 45.0% | |
| CCTGATCCATTGTCCAAGTA+TGG | + | chr6.3:81346374-81346393 | None:intergenic | 45.0% | |
| GACAATAGTTACTCCCCACA+TGG | + | chr6.3:81345113-81345132 | None:intergenic | 45.0% | |
| GACACAACCCTCTACTCTTT+AGG | + | chr6.3:81348269-81348288 | None:intergenic | 45.0% | |
| GCAACAGTACTACATCTGGT+GGG | - | chr6.3:81344965-81344984 | MS.gene68987:intron | 45.0% | |
| GCTTGTTTCCCCATTTGGAA+AGG | - | chr6.3:81345353-81345372 | MS.gene68987:intron | 45.0% | |
| GGCTCTTAGCTTACCATACT+TGG | - | chr6.3:81346358-81346377 | MS.gene68987:intron | 45.0% | |
| GGTGACTAGGAATATGACAG+TGG | - | chr6.3:81346101-81346120 | MS.gene68987:intron | 45.0% | |
| GTGGGAGAGGAAGATAAGAT+TGG | - | chr6.3:81344096-81344115 | MS.gene68987:CDS | 45.0% | |
| GTGGGGCAATGAAAAAAGCT+AGG | - | chr6.3:81344983-81345002 | MS.gene68987:intron | 45.0% | |
| TCACCTCAATTTGAGCCTGA+AGG | + | chr6.3:81346197-81346216 | None:intergenic | 45.0% | |
| TCAGAAGATCGATCTAGTGG+TGG | + | chr6.3:81344318-81344337 | None:intergenic | 45.0% | |
| TCCAAAGGATTACCTGACCA+GGG | + | chr6.3:81347694-81347713 | None:intergenic | 45.0% | |
| TGCAACAGTACTACATCTGG+TGG | - | chr6.3:81344964-81344983 | MS.gene68987:intron | 45.0% | |
| TGGGGAAACAAGCTGATGAA+GGG | + | chr6.3:81345346-81345365 | None:intergenic | 45.0% | |
| TGTTTATTCCCTGAAGACCC+TGG | - | chr6.3:81347674-81347693 | MS.gene68987:intron | 45.0% | |
| ! | CATCAGCTTGTTTCCCCATT+TGG | - | chr6.3:81345348-81345367 | MS.gene68987:intron | 45.0% |
| !! | TAATTAAATAATTGAATTAA+TGG | - | chr6.3:81346503-81346522 | MS.gene68987:intron | 5.0% |
| !!! | TTAAATTACTTTATTATTTT+TGG | - | chr6.3:81344886-81344905 | MS.gene68987:intron | 5.0% |
| ACCCTGGTCAGGTAATCCTT+TGG | - | chr6.3:81347690-81347709 | MS.gene68987:intron | 50.0% | |
| ATTACCTGACCAGGGTCTTC+AGG | + | chr6.3:81347686-81347705 | None:intergenic | 50.0% | |
| GAAGAGGAAAGCAGCTGAAG+AGG | - | chr6.3:81347935-81347954 | MS.gene68987:intron | 50.0% | |
| TTACCTGACCAGGGTCTTCA+GGG | + | chr6.3:81347685-81347704 | None:intergenic | 50.0% | |
| !! | GCTCTTGGGGCACTGTTTAA+GGG | - | chr6.3:81345720-81345739 | MS.gene68987:intron | 50.0% |
| !! | TGCTCTTGGGGCACTGTTTA+AGG | - | chr6.3:81345719-81345738 | MS.gene68987:intron | 50.0% |
| ATTCCCTGAAGACCCTGGTC+AGG | - | chr6.3:81347679-81347698 | MS.gene68987:intron | 55.0% | |
| GATTATTGGGCACCTGCCCT+AGG | - | chr6.3:81348336-81348355 | MS.gene68987:CDS | 55.0% | |
| ACCGAAAGCCTCCTCCTCCT+AGG | + | chr6.3:81348356-81348375 | None:intergenic | 60.0% | |
| CCCTAGGAGGAGGAGGCTTT+CGG | - | chr6.3:81348352-81348371 | MS.gene68987:CDS | 60.0% | |
| CCGAAAGCCTCCTCCTCCTA+GGG | + | chr6.3:81348355-81348374 | None:intergenic | 60.0% | |
| TATTGGGCACCTGCCCTAGG+AGG | - | chr6.3:81348339-81348358 | MS.gene68987:CDS | 60.0% | |
| AAGCCTCCTCCTCCTAGGGC+AGG | + | chr6.3:81348351-81348370 | None:intergenic | 65.0% | |
| GCACCTGCCCTAGGAGGAGG+AGG | - | chr6.3:81348345-81348364 | MS.gene68987:CDS | 70.0% | |
| TGGGCACCTGCCCTAGGAGG+AGG | - | chr6.3:81348342-81348361 | MS.gene68987:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 81344086 | 81348377 | 81344086 | ID=MS.gene68987 |
| chr6.3 | mRNA | 81344086 | 81348377 | 81344086 | ID=MS.gene68987.t1;Parent=MS.gene68987 |
| chr6.3 | exon | 81348125 | 81348377 | 81348125 | ID=MS.gene68987.t1.exon1;Parent=MS.gene68987.t1 |
| chr6.3 | CDS | 81348125 | 81348377 | 81348125 | ID=cds.MS.gene68987.t1;Parent=MS.gene68987.t1 |
| chr6.3 | exon | 81347425 | 81347499 | 81347425 | ID=MS.gene68987.t1.exon2;Parent=MS.gene68987.t1 |
| chr6.3 | CDS | 81347425 | 81347499 | 81347425 | ID=cds.MS.gene68987.t1;Parent=MS.gene68987.t1 |
| chr6.3 | exon | 81347089 | 81347154 | 81347089 | ID=MS.gene68987.t1.exon3;Parent=MS.gene68987.t1 |
| chr6.3 | CDS | 81347089 | 81347154 | 81347089 | ID=cds.MS.gene68987.t1;Parent=MS.gene68987.t1 |
| chr6.3 | exon | 81346251 | 81346316 | 81346251 | ID=MS.gene68987.t1.exon4;Parent=MS.gene68987.t1 |
| chr6.3 | CDS | 81346251 | 81346316 | 81346251 | ID=cds.MS.gene68987.t1;Parent=MS.gene68987.t1 |
| chr6.3 | exon | 81346048 | 81346104 | 81346048 | ID=MS.gene68987.t1.exon5;Parent=MS.gene68987.t1 |
| chr6.3 | CDS | 81346048 | 81346104 | 81346048 | ID=cds.MS.gene68987.t1;Parent=MS.gene68987.t1 |
| chr6.3 | exon | 81344763 | 81344807 | 81344763 | ID=MS.gene68987.t1.exon6;Parent=MS.gene68987.t1 |
| chr6.3 | CDS | 81344763 | 81344807 | 81344763 | ID=cds.MS.gene68987.t1;Parent=MS.gene68987.t1 |
| chr6.3 | exon | 81344507 | 81344548 | 81344507 | ID=MS.gene68987.t1.exon7;Parent=MS.gene68987.t1 |
| chr6.3 | CDS | 81344507 | 81344548 | 81344507 | ID=cds.MS.gene68987.t1;Parent=MS.gene68987.t1 |
| chr6.3 | exon | 81344086 | 81344223 | 81344086 | ID=MS.gene68987.t1.exon8;Parent=MS.gene68987.t1 |
| chr6.3 | CDS | 81344086 | 81344223 | 81344086 | ID=cds.MS.gene68987.t1;Parent=MS.gene68987.t1 |
| Gene Sequence |
| Protein sequence |
