Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69260.t1 | XP_003600852.1 | 90.2 | 307 | 30 | 0 | 1 | 307 | 1 | 307 | 3.30E-152 | 547.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69260.t1 | O04195 | 39.7 | 297 | 154 | 7 | 1 | 294 | 1 | 275 | 5.0e-48 | 193.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69260.t1 | G7JAN9 | 90.2 | 307 | 30 | 0 | 1 | 307 | 1 | 307 | 2.4e-152 | 547.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene69260 | 0.813598 | 2.36E-51 | -1.69E-46 |
| MS.gene049150 | MS.gene69260 | 0.82913 | 6.12E-55 | -1.69E-46 |
| MS.gene049151 | MS.gene69260 | 0.823827 | 1.12E-53 | -1.69E-46 |
| MS.gene049153 | MS.gene69260 | 0.834379 | 3.10E-56 | -1.69E-46 |
| MS.gene049378 | MS.gene69260 | 0.822273 | 2.59E-53 | -1.69E-46 |
| MS.gene049599 | MS.gene69260 | -0.800695 | 1.28E-48 | -1.69E-46 |
| MS.gene049758 | MS.gene69260 | 0.840694 | 7.45E-58 | -1.69E-46 |
| MS.gene049910 | MS.gene69260 | 0.820095 | 8.22E-53 | -1.69E-46 |
| MS.gene049993 | MS.gene69260 | 0.801801 | 7.59E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene69260 | 0.830095 | 3.56E-55 | -1.69E-46 |
| MS.gene050227 | MS.gene69260 | 0.831357 | 1.75E-55 | -1.69E-46 |
| MS.gene050228 | MS.gene69260 | 0.837296 | 5.65E-57 | -1.69E-46 |
| MS.gene050301 | MS.gene69260 | 0.821387 | 4.15E-53 | -1.69E-46 |
| MS.gene050330 | MS.gene69260 | -0.823099 | 1.66E-53 | -1.69E-46 |
| MS.gene050397 | MS.gene69260 | 0.812546 | 4.02E-51 | -1.69E-46 |
| MS.gene050464 | MS.gene69260 | 0.820608 | 6.27E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene69260 | -0.838949 | 2.12E-57 | -1.69E-46 |
| MS.gene050642 | MS.gene69260 | 0.828428 | 9.04E-55 | -1.69E-46 |
| MS.gene05119 | MS.gene69260 | -0.814066 | 1.86E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene69260 | 0.879082 | 1.66E-69 | -1.69E-46 |
| MS.gene051983 | MS.gene69260 | 0.856694 | 2.70E-62 | -1.69E-46 |
| MS.gene052011 | MS.gene69260 | -0.81765 | 2.95E-52 | -1.69E-46 |
| MS.gene052077 | MS.gene69260 | 0.839655 | 1.39E-57 | -1.69E-46 |
| MS.gene052178 | MS.gene69260 | 0.807541 | 4.81E-50 | -1.69E-46 |
| MS.gene052253 | MS.gene69260 | 0.823583 | 1.28E-53 | -1.69E-46 |
| MS.gene052340 | MS.gene69260 | 0.826989 | 2.00E-54 | -1.69E-46 |
| MS.gene053557 | MS.gene69260 | 0.808521 | 2.97E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene69260 | 0.859862 | 3.08E-63 | -1.69E-46 |
| MS.gene054183 | MS.gene69260 | 0.80368 | 3.10E-49 | -1.69E-46 |
| MS.gene054184 | MS.gene69260 | 0.813537 | 2.43E-51 | -1.69E-46 |
| MS.gene054185 | MS.gene69260 | 0.810901 | 9.15E-51 | -1.69E-46 |
| MS.gene054379 | MS.gene69260 | 0.802154 | 6.42E-49 | -1.69E-46 |
| MS.gene054473 | MS.gene69260 | 0.803378 | 3.59E-49 | -1.69E-46 |
| MS.gene054542 | MS.gene69260 | 0.835059 | 2.09E-56 | -1.69E-46 |
| MS.gene054930 | MS.gene69260 | 0.825616 | 4.25E-54 | -1.69E-46 |
| MS.gene054983 | MS.gene69260 | 0.808733 | 2.68E-50 | -1.69E-46 |
| MS.gene055277 | MS.gene69260 | 0.80165 | 8.15E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene69260 | 0.815037 | 1.13E-51 | -1.69E-46 |
| MS.gene055428 | MS.gene69260 | 0.801345 | 9.41E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene69260 | 0.804866 | 1.76E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene69260 | 0.805348 | 1.39E-49 | -1.69E-46 |
| MS.gene056447 | MS.gene69260 | 0.826714 | 2.33E-54 | -1.69E-46 |
| MS.gene056612 | MS.gene69260 | 0.805291 | 1.43E-49 | -1.69E-46 |
| MS.gene056899 | MS.gene69260 | -0.812079 | 5.08E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene69260 | 0.86281 | 3.89E-64 | -1.69E-46 |
| MS.gene05702 | MS.gene69260 | 0.801488 | 8.79E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene69260 | 0.805218 | 1.48E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene69260 | 0.811028 | 8.59E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene69260 | 0.825211 | 5.30E-54 | -1.69E-46 |
| MS.gene058142 | MS.gene69260 | 0.813705 | 2.24E-51 | -1.69E-46 |
| MS.gene058845 | MS.gene69260 | 0.801407 | 9.14E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene69260 | 0.821611 | 3.68E-53 | -1.69E-46 |
| MS.gene059285 | MS.gene69260 | 0.816446 | 5.51E-52 | -1.69E-46 |
| MS.gene059421 | MS.gene69260 | 0.803001 | 4.29E-49 | -1.69E-46 |
| MS.gene059609 | MS.gene69260 | 0.825121 | 5.57E-54 | -1.69E-46 |
| MS.gene05984 | MS.gene69260 | 0.843249 | 1.57E-58 | -1.69E-46 |
| MS.gene059894 | MS.gene69260 | 0.828345 | 9.47E-55 | -1.69E-46 |
| MS.gene061049 | MS.gene69260 | 0.853029 | 3.13E-61 | -1.69E-46 |
| MS.gene061114 | MS.gene69260 | -0.825822 | 3.80E-54 | -1.69E-46 |
| MS.gene061159 | MS.gene69260 | 0.820419 | 6.93E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69260.t1 | MTR_3g070090 | 90.228 | 307 | 30 | 0 | 1 | 307 | 1 | 307 | 0.0 | 555 |
| MS.gene69260.t1 | MTR_5g081740 | 57.285 | 302 | 118 | 5 | 1 | 299 | 1 | 294 | 2.50e-109 | 319 |
| MS.gene69260.t1 | MTR_5g081740 | 56.904 | 239 | 94 | 4 | 1 | 238 | 1 | 231 | 2.44e-82 | 248 |
| MS.gene69260.t1 | MTR_5g081740 | 56.904 | 239 | 94 | 4 | 1 | 238 | 1 | 231 | 7.33e-82 | 248 |
| MS.gene69260.t1 | MTR_5g081740 | 55.828 | 163 | 69 | 2 | 1 | 163 | 1 | 160 | 1.13e-52 | 171 |
| MS.gene69260.t1 | MTR_7g092870 | 57.616 | 151 | 61 | 2 | 1 | 151 | 1 | 148 | 1.02e-48 | 159 |
| MS.gene69260.t1 | MTR_7g092875 | 69.565 | 92 | 28 | 0 | 192 | 283 | 1 | 92 | 6.82e-39 | 132 |
| MS.gene69260.t1 | MTR_8g046260 | 29.126 | 206 | 141 | 3 | 89 | 289 | 47 | 252 | 6.79e-22 | 92.8 |
| MS.gene69260.t1 | MTR_6g090070 | 28.365 | 208 | 144 | 4 | 87 | 289 | 38 | 245 | 4.73e-19 | 85.1 |
| MS.gene69260.t1 | MTR_1g073610 | 25.600 | 250 | 174 | 6 | 44 | 289 | 5 | 246 | 1.05e-16 | 78.6 |
| MS.gene69260.t1 | MTR_8g013090 | 27.778 | 216 | 136 | 5 | 87 | 289 | 35 | 243 | 3.58e-15 | 74.3 |
| MS.gene69260.t1 | MTR_1g045120 | 23.810 | 210 | 154 | 4 | 86 | 289 | 38 | 247 | 8.72e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69260.t1 | AT2G39920 | 38.796 | 299 | 153 | 7 | 1 | 294 | 1 | 274 | 4.88e-65 | 206 |
| MS.gene69260.t1 | AT2G39920 | 38.796 | 299 | 154 | 7 | 1 | 294 | 1 | 275 | 6.24e-65 | 206 |
| MS.gene69260.t1 | AT2G39920 | 38.796 | 299 | 154 | 7 | 1 | 294 | 1 | 275 | 6.24e-65 | 206 |
| MS.gene69260.t1 | AT2G39920 | 38.796 | 299 | 154 | 7 | 1 | 294 | 1 | 275 | 6.24e-65 | 206 |
| MS.gene69260.t1 | AT4G29270 | 28.854 | 253 | 161 | 6 | 46 | 289 | 7 | 249 | 4.07e-26 | 104 |
| MS.gene69260.t1 | AT4G29260 | 30.698 | 215 | 138 | 3 | 83 | 289 | 37 | 248 | 3.72e-23 | 96.3 |
| MS.gene69260.t1 | AT1G04040 | 23.913 | 230 | 162 | 5 | 71 | 289 | 37 | 264 | 1.45e-17 | 81.3 |
| MS.gene69260.t1 | AT5G51260 | 27.014 | 211 | 149 | 3 | 83 | 288 | 39 | 249 | 3.04e-17 | 80.1 |
| MS.gene69260.t1 | AT5G44020 | 24.891 | 229 | 152 | 7 | 75 | 289 | 43 | 265 | 6.44e-17 | 79.3 |
| MS.gene69260.t1 | AT2G38600 | 25.105 | 239 | 168 | 5 | 58 | 289 | 10 | 244 | 1.44e-16 | 78.2 |
| MS.gene69260.t1 | AT2G38600 | 25.105 | 239 | 168 | 5 | 58 | 289 | 10 | 244 | 1.44e-16 | 78.2 |
| MS.gene69260.t1 | AT4G25150 | 26.295 | 251 | 171 | 5 | 53 | 289 | 3 | 253 | 2.56e-16 | 77.8 |
| MS.gene69260.t1 | AT5G51260 | 27.950 | 161 | 111 | 3 | 83 | 238 | 39 | 199 | 8.39e-13 | 66.6 |
Find 55 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGATTAATGGTGACATTT+TGG | 0.180740 | 3.2:+63840982 | None:intergenic |
| GATACATCATCAAGCCATTA+TGG | 0.234587 | 3.2:-63841996 | MS.gene69260:CDS |
| GCTGAGATCAATAACTTAAA+AGG | 0.268132 | 3.2:-63841774 | MS.gene69260:CDS |
| AAATTCCGTGTTCGAGTATC+TGG | 0.273477 | 3.2:+63840648 | None:intergenic |
| TGCAGAAACAAGATGATTAA+TGG | 0.273674 | 3.2:+63840971 | None:intergenic |
| GCTAGTCTTTCAGATGATTC+TGG | 0.303642 | 3.2:-63842318 | MS.gene69260:intron |
| TTTGCTTCACTTGTCACTCT+TGG | 0.322672 | 3.2:-63841927 | MS.gene69260:CDS |
| TACCTATAATACTCTTTATA+TGG | 0.332032 | 3.2:+63840694 | None:intergenic |
| TTTCTGCAGGATTTAGTAGT+TGG | 0.347370 | 3.2:-63840956 | MS.gene69260:CDS |
| TTCCATATAAAGAGTATTAT+AGG | 0.366608 | 3.2:-63840696 | MS.gene69260:CDS |
| TGACGCAATTCGGTAGTATA+AGG | 0.391337 | 3.2:+63841573 | None:intergenic |
| ATTAATCATCTTGTTTCTGC+AGG | 0.410889 | 3.2:-63840969 | MS.gene69260:CDS |
| AATTCGGTAGTATAAGGATT+TGG | 0.431804 | 3.2:+63841579 | None:intergenic |
| GAAATACCTGTGACGCAATT+CGG | 0.432525 | 3.2:+63841563 | None:intergenic |
| TAGACCACCCATCAGTTTGA+AGG | 0.440481 | 3.2:+63841036 | None:intergenic |
| GTCTGCTTATGCGCATCAAA+TGG | 0.443393 | 3.2:-63842358 | MS.gene69260:CDS |
| ATACATCATCAAGCCATTAT+GGG | 0.447577 | 3.2:-63841995 | MS.gene69260:CDS |
| AGCCATTATGGGATAGAATC+AGG | 0.447643 | 3.2:-63841984 | MS.gene69260:CDS |
| ATCCTGATTCTATCCCATAA+TGG | 0.450812 | 3.2:+63841982 | None:intergenic |
| GCCAGATCTCTACATATGTT+AGG | 0.462986 | 3.2:+63841741 | None:intergenic |
| TGGTATGGATGTAGTGTTGA+TGG | 0.467179 | 3.2:-63841622 | MS.gene69260:CDS |
| GAGTATTATAGGTAGCCATT+TGG | 0.474798 | 3.2:-63840685 | MS.gene69260:CDS |
| AACTTGTCACATACAAGGCC+TGG | 0.477255 | 3.2:+63840618 | None:intergenic |
| AAGAAGTATGATACAGAAGA+AGG | 0.483859 | 3.2:-63840721 | MS.gene69260:CDS |
| TACATGAACCTTCAAACTGA+TGG | 0.488311 | 3.2:-63841044 | MS.gene69260:CDS |
| TCCTAACATATGTAGAGATC+TGG | 0.491695 | 3.2:-63841742 | MS.gene69260:CDS |
| TCATGTCAAAGTAAAAGTAC+TGG | 0.493627 | 3.2:-63841858 | MS.gene69260:CDS |
| AGAAAAGTACTCATCCCCTT+TGG | 0.500648 | 3.2:+63840749 | None:intergenic |
| CACAGCTATATTCAAGTCTC+GGG | 0.503911 | 3.2:+63841689 | None:intergenic |
| AAGAATCGGACTCTGCCAAA+GGG | 0.509917 | 3.2:-63840764 | MS.gene69260:CDS |
| ACACAGCTATATTCAAGTCT+CGG | 0.515547 | 3.2:+63841688 | None:intergenic |
| AGTGTGAGGCCTTCAGATGA+TGG | 0.531650 | 3.2:-63841642 | MS.gene69260:CDS |
| GAGTGCTCAACGCATCCAAA+TGG | 0.536957 | 3.2:+63840670 | None:intergenic |
| TCGGTAGTATAAGGATTTGG+AGG | 0.540719 | 3.2:+63841582 | None:intergenic |
| ATACTACCGAATTGCGTCAC+AGG | 0.546143 | 3.2:-63841569 | MS.gene69260:intron |
| CATTAGCAACTGTACGGAAG+AGG | 0.546839 | 3.2:-63841102 | MS.gene69260:CDS |
| CAGATAGAGAGTATAGATCC+TGG | 0.548389 | 3.2:-63840588 | MS.gene69260:CDS |
| GAATCATGAAACTAATGTCC+AGG | 0.557734 | 3.2:+63840570 | None:intergenic |
| CTGGCTATACATTATGTCAA+AGG | 0.560936 | 3.2:-63841723 | MS.gene69260:CDS |
| GTTGGTCTTCCTTGATGATG+AGG | 0.563993 | 3.2:-63840938 | MS.gene69260:intron |
| ACATGAACCTTCAAACTGAT+GGG | 0.564919 | 3.2:-63841043 | MS.gene69260:CDS |
| GTCATCATACCTCATCATCA+AGG | 0.572269 | 3.2:+63840929 | None:intergenic |
| GAAGAATCGGACTCTGCCAA+AGG | 0.574512 | 3.2:-63840765 | MS.gene69260:CDS |
| GAGGCCTTCAGATGATGGTA+TGG | 0.588219 | 3.2:-63841637 | MS.gene69260:CDS |
| TGACAGCATTAGCAACTGTA+CGG | 0.612578 | 3.2:-63841108 | MS.gene69260:CDS |
| GTTCAAACTTGTCACATACA+AGG | 0.614224 | 3.2:+63840613 | None:intergenic |
| AGAAGTATGATACAGAAGAA+GGG | 0.619155 | 3.2:-63840720 | MS.gene69260:CDS |
| GCTATACATTATGTCAAAGG+AGG | 0.630795 | 3.2:-63841720 | MS.gene69260:CDS |
| ATGATTATCACAAGAGTGTG+AGG | 0.631778 | 3.2:-63841656 | MS.gene69260:CDS |
| ACATCCATACCATCATCTGA+AGG | 0.643123 | 3.2:+63841633 | None:intergenic |
| TGATTGCAGCATAATCGTCA+AGG | 0.644438 | 3.2:+63841878 | None:intergenic |
| AGAATCGGACTCTGCCAAAG+GGG | 0.681596 | 3.2:-63840763 | MS.gene69260:CDS |
| TGAACCTTCAAACTGATGGG+TGG | 0.684423 | 3.2:-63841040 | MS.gene69260:CDS |
| GCACTCCAGATACTCGAACA+CGG | 0.714450 | 3.2:-63840653 | MS.gene69260:CDS |
| AATGCACACTGCAATAACTG+TGG | 0.734913 | 3.2:+63841805 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAACAGATTTATAGTTC+TGG | - | chr3.2:63841706-63841725 | MS.gene69260:CDS | 20.0% |
| !! | TACCTATAATACTCTTTATA+TGG | + | chr3.2:63842250-63842269 | None:intergenic | 20.0% |
| !! | TGATTACAATTTCCATTATA+TGG | - | chr3.2:63841765-63841784 | MS.gene69260:CDS | 20.0% |
| !! | TTGTTATCAAAACCATATAA+TGG | + | chr3.2:63841780-63841799 | None:intergenic | 20.0% |
| !! | TTTAAAAACATTGGTATCAA+TGG | - | chr3.2:63840883-63840902 | MS.gene69260:intron | 20.0% |
| !!! | TTCCATATAAAGAGTATTAT+AGG | - | chr3.2:63842245-63842264 | MS.gene69260:intron | 20.0% |
| ! | AATGGAAATTGTAATCAAGT+TGG | + | chr3.2:63841762-63841781 | None:intergenic | 25.0% |
| ! | ATTCTAGTATTGTCAAATCA+CGG | - | chr3.2:63841478-63841497 | MS.gene69260:intron | 25.0% |
| ! | CAAAAGTTTGATATGATAAC+CGG | - | chr3.2:63842116-63842135 | MS.gene69260:intron | 25.0% |
| ! | TCGAACAAACTAATATATTC+CGG | - | chr3.2:63841614-63841633 | MS.gene69260:CDS | 25.0% |
| !! | TTTGTAAAAAAGCATAGTTG+AGG | + | chr3.2:63842079-63842098 | None:intergenic | 25.0% |
| AAACTAATATATTCCGGGAT+CGG | - | chr3.2:63841620-63841639 | MS.gene69260:CDS | 30.0% | |
| AACATTGACAGTTAAAGATC+CGG | + | chr3.2:63842138-63842157 | None:intergenic | 30.0% | |
| AATTCGGTAGTATAAGGATT+TGG | + | chr3.2:63841365-63841384 | None:intergenic | 30.0% | |
| ACATTATCTTGGAGATACAA+AGG | + | chr3.2:63842045-63842064 | None:intergenic | 30.0% | |
| ATACATCATCAAGCCATTAT+GGG | - | chr3.2:63840946-63840965 | MS.gene69260:CDS | 30.0% | |
| ATCTGTTAAATGTTGCAAGT+TGG | + | chr3.2:63841697-63841716 | None:intergenic | 30.0% | |
| ATTTACACCATCCTATATCA+AGG | + | chr3.2:63841419-63841438 | None:intergenic | 30.0% | |
| CATTATCTTGGAGATACAAA+GGG | + | chr3.2:63842044-63842063 | None:intergenic | 30.0% | |
| CGAACAAACTAATATATTCC+GGG | - | chr3.2:63841615-63841634 | MS.gene69260:CDS | 30.0% | |
| GCTGAGATCAATAACTTAAA+AGG | - | chr3.2:63841167-63841186 | MS.gene69260:intron | 30.0% | |
| TACACAAAAGAAACTCTGTT+AGG | + | chr3.2:63841803-63841822 | None:intergenic | 30.0% | |
| TATTTGCTTGGACATTATCT+TGG | + | chr3.2:63842056-63842075 | None:intergenic | 30.0% | |
| TGCAGAAACAAGATGATTAA+TGG | + | chr3.2:63841973-63841992 | None:intergenic | 30.0% | |
| TGCTATGCTATAAGTTATAG+CGG | + | chr3.2:63841590-63841609 | None:intergenic | 30.0% | |
| TGTTGTCAAATAACAGCTAT+AGG | - | chr3.2:63841563-63841582 | MS.gene69260:intron | 30.0% | |
| ! | AAGAAGTATGATACAGAAGA+AGG | - | chr3.2:63842220-63842239 | MS.gene69260:intron | 30.0% |
| ! | AGAAGTATGATACAGAAGAA+GGG | - | chr3.2:63842221-63842240 | MS.gene69260:intron | 30.0% |
| ! | CGGTTATCATATCAAACTTT+TGG | + | chr3.2:63842118-63842137 | None:intergenic | 30.0% |
| ! | GATGATTAATGGTGACATTT+TGG | + | chr3.2:63841962-63841981 | None:intergenic | 30.0% |
| ! | TAACAGAGTTTCTTTTGTGT+AGG | - | chr3.2:63841802-63841821 | MS.gene69260:CDS | 30.0% |
| ! | TCATGTCAAAGTAAAAGTAC+TGG | - | chr3.2:63841083-63841102 | MS.gene69260:CDS | 30.0% |
| !! | ATTAATCATCTTGTTTCTGC+AGG | - | chr3.2:63841972-63841991 | MS.gene69260:CDS | 30.0% |
| !!! | AGTTTTATTGATTACTCTGC+TGG | - | chr3.2:63841037-63841056 | MS.gene69260:CDS | 30.0% |
| !!! | GGTTCGCTTTTTAAAAACAT+TGG | - | chr3.2:63840874-63840893 | MS.gene69260:intron | 30.0% |
| !!! | TTTTTTCAGAGCTGAAGAAT+CGG | - | chr3.2:63842163-63842182 | MS.gene69260:intron | 30.0% |
| AAATCACGGTTATAGCTAGA+TGG | - | chr3.2:63841492-63841511 | MS.gene69260:intron | 35.0% | |
| ACACAGCTATATTCAAGTCT+CGG | + | chr3.2:63841256-63841275 | None:intergenic | 35.0% | |
| ACATGAACCTTCAAACTGAT+GGG | - | chr3.2:63841898-63841917 | MS.gene69260:CDS | 35.0% | |
| ATCCTGATTCTATCCCATAA+TGG | + | chr3.2:63840962-63840981 | None:intergenic | 35.0% | |
| CAACTAATGCTCCTTGATAT+AGG | - | chr3.2:63841405-63841424 | MS.gene69260:intron | 35.0% | |
| CTGGCTATACATTATGTCAA+AGG | - | chr3.2:63841218-63841237 | MS.gene69260:intron | 35.0% | |
| GAGTATTATAGGTAGCCATT+TGG | - | chr3.2:63842256-63842275 | MS.gene69260:intron | 35.0% | |
| GATACATCATCAAGCCATTA+TGG | - | chr3.2:63840945-63840964 | MS.gene69260:CDS | 35.0% | |
| GCTATACATTATGTCAAAGG+AGG | - | chr3.2:63841221-63841240 | MS.gene69260:intron | 35.0% | |
| GTTCAAACTTGTCACATACA+AGG | + | chr3.2:63842331-63842350 | None:intergenic | 35.0% | |
| TAATGCTCCTTGATATAGGA+TGG | - | chr3.2:63841409-63841428 | MS.gene69260:intron | 35.0% | |
| TACATGAACCTTCAAACTGA+TGG | - | chr3.2:63841897-63841916 | MS.gene69260:CDS | 35.0% | |
| TCCTAACATATGTAGAGATC+TGG | - | chr3.2:63841199-63841218 | MS.gene69260:intron | 35.0% | |
| TCTATAACCAGAACAAACTG+CGG | - | chr3.2:63840786-63840805 | MS.gene69260:intron | 35.0% | |
| TTTCTGCAGGATTTAGTAGT+TGG | - | chr3.2:63841985-63842004 | MS.gene69260:CDS | 35.0% | |
| ! | ATGATTATCACAAGAGTGTG+AGG | - | chr3.2:63841285-63841304 | MS.gene69260:intron | 35.0% |
| AAATTCCGTGTTCGAGTATC+TGG | + | chr3.2:63842296-63842315 | None:intergenic | 40.0% | |
| AACTGAATTGTAGACCGTGT+TGG | - | chr3.2:63840824-63840843 | MS.gene69260:intron | 40.0% | |
| AATGCACACTGCAATAACTG+TGG | + | chr3.2:63841139-63841158 | None:intergenic | 40.0% | |
| ACATCCATACCATCATCTGA+AGG | + | chr3.2:63841311-63841330 | None:intergenic | 40.0% | |
| AGCCATTATGGGATAGAATC+AGG | - | chr3.2:63840957-63840976 | MS.gene69260:CDS | 40.0% | |
| ATGAGAAACAACTGATGCTG+TGG | - | chr3.2:63841455-63841474 | MS.gene69260:intron | 40.0% | |
| CACAGCTATATTCAAGTCTC+GGG | + | chr3.2:63841255-63841274 | None:intergenic | 40.0% | |
| GAAATACCTGTGACGCAATT+CGG | + | chr3.2:63841381-63841400 | None:intergenic | 40.0% | |
| GCCAGATCTCTACATATGTT+AGG | + | chr3.2:63841203-63841222 | None:intergenic | 40.0% | |
| GGTTCAACCAATTGAACTGT+CGG | - | chr3.2:63840852-63840871 | MS.gene69260:intron | 40.0% | |
| GTCATCATACCTCATCATCA+AGG | + | chr3.2:63842015-63842034 | None:intergenic | 40.0% | |
| GTTCAACCAATTGAACTGTC+GGG | - | chr3.2:63840853-63840872 | MS.gene69260:intron | 40.0% | |
| TCAGATGATTCTGGTATGTC+AGG | - | chr3.2:63840632-63840651 | MS.gene69260:CDS | 40.0% | |
| TCGGTAGTATAAGGATTTGG+AGG | + | chr3.2:63841362-63841381 | None:intergenic | 40.0% | |
| TGACAGCATTAGCAACTGTA+CGG | - | chr3.2:63841833-63841852 | MS.gene69260:CDS | 40.0% | |
| TGACGCAATTCGGTAGTATA+AGG | + | chr3.2:63841371-63841390 | None:intergenic | 40.0% | |
| TGATTGCAGCATAATCGTCA+AGG | + | chr3.2:63841066-63841085 | None:intergenic | 40.0% | |
| TTTGCTTCACTTGTCACTCT+TGG | - | chr3.2:63841014-63841033 | MS.gene69260:CDS | 40.0% | |
| ! | AAGGGGATGAGTACTTTTCT+AGG | - | chr3.2:63842195-63842214 | MS.gene69260:intron | 40.0% |
| ! | CAGATAGAGAGTATAGATCC+TGG | - | chr3.2:63842353-63842372 | MS.gene69260:CDS | 40.0% |
| ! | GCATAGTTGAGGTATTTGCT+TGG | + | chr3.2:63842068-63842087 | None:intergenic | 40.0% |
| ! | TGGTATGGATGTAGTGTTGA+TGG | - | chr3.2:63841319-63841338 | MS.gene69260:intron | 40.0% |
| !! | AGAAAAGTACTCATCCCCTT+TGG | + | chr3.2:63842195-63842214 | None:intergenic | 40.0% |
| !! | ATCAAGGAGCATTAGTTGCA+AGG | + | chr3.2:63841403-63841422 | None:intergenic | 40.0% |
| !! | GCTAGTCTTTCAGATGATTC+TGG | - | chr3.2:63840623-63840642 | MS.gene69260:CDS | 40.0% |
| AACTTGTCACATACAAGGCC+TGG | + | chr3.2:63842326-63842345 | None:intergenic | 45.0% | |
| AAGAATCGGACTCTGCCAAA+GGG | - | chr3.2:63842177-63842196 | MS.gene69260:intron | 45.0% | |
| ATACTACCGAATTGCGTCAC+AGG | - | chr3.2:63841372-63841391 | MS.gene69260:intron | 45.0% | |
| CATTAGCAACTGTACGGAAG+AGG | - | chr3.2:63841839-63841858 | MS.gene69260:CDS | 45.0% | |
| CCAGTTGAAGCATAATCCAG+AGG | + | chr3.2:63840758-63840777 | None:intergenic | 45.0% | |
| CCTCTGGATTATGCTTCAAC+TGG | - | chr3.2:63840755-63840774 | MS.gene69260:CDS | 45.0% | |
| GTCTGCTTATGCGCATCAAA+TGG | - | chr3.2:63840583-63840602 | MS.gene69260:CDS | 45.0% | |
| TAGACCACCCATCAGTTTGA+AGG | + | chr3.2:63841908-63841927 | None:intergenic | 45.0% | |
| TGAACCTTCAAACTGATGGG+TGG | - | chr3.2:63841901-63841920 | MS.gene69260:CDS | 45.0% | |
| ! | ACACGGAATTTTCTGCTTCC+AGG | - | chr3.2:63842305-63842324 | MS.gene69260:intron | 45.0% |
| !! | CGCTGGTTCAATGTCTAGTT+CGG | + | chr3.2:63840732-63840751 | None:intergenic | 45.0% |
| !! | GTTGGTCTTCCTTGATGATG+AGG | - | chr3.2:63842003-63842022 | MS.gene69260:intron | 45.0% |
| !! | TTGTAGACCGTGTTGGTTCA+CGG | - | chr3.2:63840831-63840850 | MS.gene69260:intron | 45.0% |
| AGAATCGGACTCTGCCAAAG+GGG | - | chr3.2:63842178-63842197 | MS.gene69260:intron | 50.0% | |
| AGCGAACCCGACAGTTCAAT+TGG | + | chr3.2:63840862-63840881 | None:intergenic | 50.0% | |
| AGTGTGAGGCCTTCAGATGA+TGG | - | chr3.2:63841299-63841318 | MS.gene69260:intron | 50.0% | |
| GAAGAATCGGACTCTGCCAA+AGG | - | chr3.2:63842176-63842195 | MS.gene69260:intron | 50.0% | |
| GAGTGCTCAACGCATCCAAA+TGG | + | chr3.2:63842274-63842293 | None:intergenic | 50.0% | |
| GCACTCCAGATACTCGAACA+CGG | - | chr3.2:63842288-63842307 | MS.gene69260:intron | 50.0% | |
| GGTTGAACCGTGAACCAACA+CGG | + | chr3.2:63840841-63840860 | None:intergenic | 50.0% | |
| ! | AGTTCGACCGCAGTTTGTTC+TGG | + | chr3.2:63840796-63840815 | None:intergenic | 50.0% |
| ! | GAGGCCTTCAGATGATGGTA+TGG | - | chr3.2:63841304-63841323 | MS.gene69260:intron | 50.0% |
| CATTGAACCAGCGAGACCTC+TGG | - | chr3.2:63840739-63840758 | MS.gene69260:CDS | 55.0% | |
| GCATAATCCAGAGGTCTCGC+TGG | + | chr3.2:63840749-63840768 | None:intergenic | 55.0% | |
| GGATCGGCGATTGACAACAC+TGG | - | chr3.2:63841636-63841655 | MS.gene69260:CDS | 55.0% | |
| GTGTTGTCAATCGCCGATCC+CGG | + | chr3.2:63841636-63841655 | None:intergenic | 55.0% | |
| TCGGCGATTGACAACACTGG+TGG | - | chr3.2:63841639-63841658 | MS.gene69260:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 63840581 | 63842382 | 63840581 | ID=MS.gene69260 |
| chr3.2 | mRNA | 63840581 | 63842382 | 63840581 | ID=MS.gene69260.t1;Parent=MS.gene69260 |
| chr3.2 | exon | 63842319 | 63842382 | 63842319 | ID=MS.gene69260.t1.exon1;Parent=MS.gene69260.t1 |
| chr3.2 | CDS | 63842319 | 63842382 | 63842319 | ID=cds.MS.gene69260.t1;Parent=MS.gene69260.t1 |
| chr3.2 | exon | 63841570 | 63842017 | 63841570 | ID=MS.gene69260.t1.exon2;Parent=MS.gene69260.t1 |
| chr3.2 | CDS | 63841570 | 63842017 | 63841570 | ID=cds.MS.gene69260.t1;Parent=MS.gene69260.t1 |
| chr3.2 | exon | 63840939 | 63841139 | 63840939 | ID=MS.gene69260.t1.exon3;Parent=MS.gene69260.t1 |
| chr3.2 | CDS | 63840939 | 63841139 | 63840939 | ID=cds.MS.gene69260.t1;Parent=MS.gene69260.t1 |
| chr3.2 | exon | 63840581 | 63840791 | 63840581 | ID=MS.gene69260.t1.exon4;Parent=MS.gene69260.t1 |
| chr3.2 | CDS | 63840581 | 63840791 | 63840581 | ID=cds.MS.gene69260.t1;Parent=MS.gene69260.t1 |
| Gene Sequence |
| Protein sequence |
