AlfalfaGEDB | MS.gene79202

M. sativa cultivar XinJiangDaYe / MS.gene79202

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79202.t1	RHN69347.1	92.8	279	8	1	1	267	24	302	4.20E-127	464.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79202.t1	Q940J1	44.1	290	124	11	1	267	20	294	8.6e-28	125.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79202.t1	G7J377	92.8	279	8	1	1	267	24	302	3.0e-127	464.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene79202	0.811728	6.05E-51	-1.69E-46
MS.gene049647	MS.gene79202	0.815568	8.65E-52	-1.69E-46
MS.gene049756	MS.gene79202	0.808311	3.30E-50	-1.69E-46
MS.gene049825	MS.gene79202	0.83073	2.49E-55	-1.69E-46
MS.gene049873	MS.gene79202	0.801822	7.51E-49	-1.69E-46
MS.gene050227	MS.gene79202	0.809652	1.70E-50	-1.69E-46
MS.gene050228	MS.gene79202	0.802151	6.43E-49	-1.69E-46
MS.gene050719	MS.gene79202	0.850094	2.12E-60	-1.69E-46
MS.gene050721	MS.gene79202	0.851649	7.74E-61	-1.69E-46
MS.gene050724	MS.gene79202	0.845806	3.23E-59	-1.69E-46
MS.gene050780	MS.gene79202	0.816664	4.92E-52	-1.69E-46
MS.gene050815	MS.gene79202	0.820732	5.87E-53	-1.69E-46
MS.gene050844	MS.gene79202	0.814992	1.16E-51	-1.69E-46
MS.gene051247	MS.gene79202	0.808999	2.35E-50	-1.69E-46
MS.gene051700	MS.gene79202	0.804395	2.21E-49	-1.69E-46
MS.gene051719	MS.gene79202	0.814607	1.41E-51	-1.69E-46
MS.gene052012	MS.gene79202	0.824763	6.77E-54	-1.69E-46
MS.gene052020	MS.gene79202	0.811361	7.28E-51	-1.69E-46
MS.gene052176	MS.gene79202	0.810399	1.18E-50	-1.69E-46
MS.gene052323	MS.gene79202	0.806288	8.85E-50	-1.69E-46
MS.gene052358	MS.gene79202	-0.811287	7.55E-51	-1.69E-46
MS.gene052613	MS.gene79202	0.804467	2.13E-49	-1.69E-46
MS.gene052665	MS.gene79202	0.818359	2.04E-52	-1.69E-46
MS.gene052863	MS.gene79202	0.813903	2.02E-51	-1.69E-46
MS.gene052896	MS.gene79202	0.829902	3.97E-55	-1.69E-46
MS.gene053008	MS.gene79202	0.800623	1.32E-48	-1.69E-46
MS.gene053221	MS.gene79202	0.837562	4.83E-57	-1.69E-46
MS.gene053226	MS.gene79202	0.804355	2.25E-49	-1.69E-46
MS.gene054467	MS.gene79202	0.807242	5.56E-50	-1.69E-46
MS.gene054468	MS.gene79202	0.838658	2.52E-57	-1.69E-46
MS.gene054472	MS.gene79202	0.816481	5.41E-52	-1.69E-46
MS.gene055358	MS.gene79202	0.802162	6.39E-49	-1.69E-46
MS.gene055466	MS.gene79202	0.806974	6.34E-50	-1.69E-46
MS.gene055468	MS.gene79202	0.80139	9.21E-49	-1.69E-46
MS.gene055512	MS.gene79202	0.823487	1.35E-53	-1.69E-46
MS.gene05604	MS.gene79202	0.806243	9.04E-50	-1.69E-46
MS.gene056069	MS.gene79202	-0.812508	4.09E-51	-1.69E-46
MS.gene057026	MS.gene79202	0.821201	4.58E-53	-1.69E-46
MS.gene057140	MS.gene79202	0.812949	3.28E-51	-1.69E-46
MS.gene057980	MS.gene79202	0.809475	1.86E-50	-1.69E-46
MS.gene058084	MS.gene79202	0.805906	1.06E-49	-1.69E-46
MS.gene058182	MS.gene79202	0.812336	4.46E-51	-1.69E-46
MS.gene058625	MS.gene79202	0.826954	2.04E-54	-1.69E-46
MS.gene058636	MS.gene79202	0.826297	2.93E-54	-1.69E-46
MS.gene058906	MS.gene79202	0.827547	1.47E-54	-1.69E-46
MS.gene05954	MS.gene79202	0.800738	1.25E-48	-1.69E-46
MS.gene059789	MS.gene79202	0.809185	2.14E-50	-1.69E-46
MS.gene060165	MS.gene79202	0.806367	8.51E-50	-1.69E-46
MS.gene060322	MS.gene79202	0.832449	9.39E-56	-1.69E-46
MS.gene060572	MS.gene79202	0.807375	5.21E-50	-1.69E-46
MS.gene060619	MS.gene79202	0.83374	4.48E-56	-1.69E-46
MS.gene060803	MS.gene79202	0.801924	7.16E-49	-1.69E-46
MS.gene061040	MS.gene79202	-0.827762	1.31E-54	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 0 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTGTTGTATTTACAGATTA+AGG	-	24130:20818-20837	MS.gene79202:intron	20.0%
!	ATAATCAACAACAATGATGT+TGG	-	24130:21002-21021	MS.gene79202:CDS	25.0%
!	GATCTTAGTTATGAAATTGT+AGG	-	24130:20697-20716	MS.gene79202:intron	25.0%
!	TATTTAGTGTATGTTTGGAT+TGG	-	24130:20607-20626	MS.gene79202:intron	25.0%
!	TGAATTTAGCAAAATCACTT+TGG	-	24130:20633-20652	MS.gene79202:intron	25.0%
!	TTATAGTTAAGTTACTACTG+TGG	+	24130:20316-20335	None:intergenic	25.0%
!!!	AAAAAGCACAATCAATGTTT+TGG	-	24130:20869-20888	MS.gene79202:intron	25.0%
!!!	TGTGTTATTTAGTGTATGTT+TGG	-	24130:20602-20621	MS.gene79202:intron	25.0%
	AACAACAATGATGTTGGTAT+TGG	-	24130:21008-21027	MS.gene79202:CDS	30.0%
	AAGGAATTGAAATCAAAGCT+TGG	-	24130:20837-20856	MS.gene79202:intron	30.0%
	ATTAAGAGTGGATCAAGTTA+AGG	-	24130:20040-20059	MS.gene79202:CDS	30.0%
	GAAATCTTATCATGTGAAGA+TGG	-	24130:21178-21197	MS.gene79202:intron	30.0%
	GTCATAATCCAATTGATCTT+TGG	+	24130:20979-20998	None:intergenic	30.0%
	TCTTCACATGATAAGATTTC+TGG	+	24130:21178-21197	None:intergenic	30.0%
	TTCAGAATCCAAAGATCAAT+TGG	-	24130:20968-20987	MS.gene79202:CDS	30.0%
	TTTCAATCAATGATGTTGGA+TGG	-	24130:19961-19980	MS.gene79202:CDS	30.0%
!	GAATTGATGTTTCTGAAGAT+GGG	+	24130:20944-20963	None:intergenic	30.0%
!!	GGCAAGTATTTAACTTTTCT+AGG	-	24130:20718-20737	MS.gene79202:intron	30.0%
	AAGATTCAGGAGACAACAAA+AGG	+	24130:21133-21152	None:intergenic	35.0%
	AAGCAGTTGGAAAGAGATTA+TGG	-	24130:20194-20213	MS.gene79202:CDS	35.0%
	AGAAGAACGTAGATTAAGAG+TGG	-	24130:20028-20047	MS.gene79202:CDS	35.0%
	AGATCAAGTACTTTCACAAG+AGG	+	24130:20682-20701	None:intergenic	35.0%
	ATCTTATCATGTGAAGATGG+AGG	-	24130:21181-21200	MS.gene79202:intron	35.0%
	GAACAAACATGTGTATGGTA+TGG	-	24130:19936-19955	MS.gene79202:CDS	35.0%
	GGAGTTTCAATCAATGATGT+TGG	-	24130:19957-19976	MS.gene79202:CDS	35.0%
	TGATCTTTGGATTCTGAACT+AGG	+	24130:20966-20985	None:intergenic	35.0%
	TTCATCACAAGATTCAAGCA+TGG	+	24130:20910-20929	None:intergenic	35.0%
	TTTCCAGTAGACTTGAAAGA+CGG	-	24130:21047-21066	MS.gene79202:CDS	35.0%
!	AGACAACAAAGCTTTTCACA+AGG	-	24130:20271-20290	MS.gene79202:CDS	35.0%
!	GGAATTGATGTTTCTGAAGA+TGG	+	24130:20945-20964	None:intergenic	35.0%
!	TGGATGGATTTGAAGAAGAA+GGG	-	24130:19977-19996	MS.gene79202:CDS	35.0%
!	TTGGATGGATTTGAAGAAGA+AGG	-	24130:19976-19995	MS.gene79202:CDS	35.0%
!!	CATGATAAGATTTCTGGTAC+TGG	+	24130:21172-21191	None:intergenic	35.0%
!!!	AATCAATGTTTTGGTGAAGG+AGG	-	24130:20878-20897	MS.gene79202:intron	35.0%
!!!	CACAATCAATGTTTTGGTGA+AGG	-	24130:20875-20894	MS.gene79202:intron	35.0%
	AACCAAACAGCTACTTGTCT+AGG	+	24130:20146-20165	None:intergenic	40.0%
	AAGATGGAAGAACAAGCAGT+TGG	-	24130:20181-20200	MS.gene79202:CDS	40.0%
	AGAAGCTTGCCATTGAACTT+GGG	-	24130:20114-20133	MS.gene79202:CDS	40.0%
	AGACTTGAAAGACGGTTCTT+CGG	-	24130:21055-21074	MS.gene79202:CDS	40.0%
	AGTGGATCAAGTTAAGGCTT+TGG	-	24130:20046-20065	MS.gene79202:CDS	40.0%
	CAATTCATGGAGGAAGATTC+AGG	+	24130:21146-21165	None:intergenic	40.0%
	CCAAGGAACAAACATGTGTA+TGG	-	24130:19931-19950	MS.gene79202:CDS	40.0%
	CCATACACATGTTTGTTCCT+TGG	+	24130:19934-19953	None:intergenic	40.0%
	GTACTGGAAACAATTCATGG+AGG	+	24130:21156-21175	None:intergenic	40.0%
!	CAACAAAGCTTTTCACAAGG+AGG	-	24130:20274-20293	MS.gene79202:CDS	40.0%
!	CTGGTACTGGAAACAATTCA+TGG	+	24130:21159-21178	None:intergenic	40.0%
!	GCAAGCTTCTCTTTTCTTTC+AGG	+	24130:20104-20123	None:intergenic	40.0%
!	TAGCTGTTTGGTTCCAAAAC+AGG	-	24130:20153-20172	MS.gene79202:CDS	40.0%
!!	CAATTTCTTAAGTGCCGATG+AGG	-	24130:21208-21227	MS.gene79202:CDS	40.0%
!!	GGCTTTGGAGAAAAACTTTG+AGG	-	24130:20061-20080	MS.gene79202:CDS	40.0%
	AGCCTAGACAAGTAGCTGTT+TGG	-	24130:20141-20160	MS.gene79202:CDS	45.0%
	GAAAAAGTTGCACGCCTCAT+CGG	+	24130:21225-21244	None:intergenic	45.0%
	GAGAAGCTTGCCATTGAACT+TGG	-	24130:20113-20132	MS.gene79202:CDS	45.0%
	GTCAGGACAGTACCATTGTA+GGG	+	24130:21267-21286	None:intergenic	45.0%
	TCCAAAACAGGAGAGCAAGA+TGG	-	24130:20165-20184	MS.gene79202:CDS	45.0%
	TCCAGCGCAATTTCTTCATC+CGG	-	24130:21086-21105	MS.gene79202:CDS	45.0%
!	GAACCGTCTTTCAAGTCTAC+TGG	+	24130:21053-21072	None:intergenic	45.0%
!	GAAGGGTGTGTTGAAGAAAC+TGG	-	24130:19994-20013	MS.gene79202:CDS	45.0%
!	TCCATCTTGCTCTCCTGTTT+TGG	+	24130:20169-20188	None:intergenic	45.0%
!!	TGAGGCGTGCAACTTTTTCT+CGG	-	24130:21226-21245	MS.gene79202:CDS	45.0%
	AATGGTACTGTCCTGACCAG+TGG	-	24130:21270-21289	MS.gene79202:CDS	50.0%
	AGCAAGCACCAACCCTACAA+TGG	-	24130:21252-21271	MS.gene79202:CDS	50.0%
	AGGCTGCAACCCAAGTTCAA+TGG	+	24130:20126-20145	None:intergenic	50.0%
	CAGCGCAATTTCTTCATCCG+GGG	-	24130:21088-21107	MS.gene79202:CDS	50.0%
	CCAGCGCAATTTCTTCATCC+GGG	-	24130:21087-21106	MS.gene79202:CDS	50.0%
	GGACAGTACCATTGTAGGGT+TGG	+	24130:21263-21282	None:intergenic	50.0%
	GGTCAGGACAGTACCATTGT+AGG	+	24130:21268-21287	None:intergenic	50.0%
	GTCCTGACCAGTGGAGTTAA+AGG	-	24130:21279-21298	MS.gene79202:CDS	50.0%
	CCCGGATGAAGAAATTGCGC+TGG	+	24130:21090-21109	None:intergenic	55.0%
!!	CTGCTGACTCTGAAGAACCC+CGG	+	24130:21108-21127	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
24130	gene	19920	21298	19920	ID=MS.gene79202
24130	mRNA	19920	21298	19920	ID=MS.gene79202.t1;Parent=MS.gene79202
24130	exon	21183	21298	21183	ID=MS.gene79202.t1.exon1;Parent=MS.gene79202.t1
24130	CDS	21183	21298	21183	ID=cds.MS.gene79202.t1;Parent=MS.gene79202.t1
24130	exon	20923	21147	20923	ID=MS.gene79202.t1.exon2;Parent=MS.gene79202.t1
24130	CDS	20923	21147	20923	ID=cds.MS.gene79202.t1;Parent=MS.gene79202.t1
24130	exon	19920	20384	19920	ID=MS.gene79202.t1.exon3;Parent=MS.gene79202.t1
24130	CDS	19920	20384	19920	ID=cds.MS.gene79202.t1;Parent=MS.gene79202.t1

Gene Sequence

>MS.gene79202

AGGAACATAGTCCAAGGAACAAACATGTGTATGGTATGGAGTTTCAATCAATGATGTTGGATGGATTTGAAGAAGAAGGGTGTGTTGAAGAAACTGGTCATCATTCTGAGAAGAACGTAGATTAAGAGTGGATCAAGTTAAGGCTTTGGAGAAAAACTTTGAGGTAGAAAACAAGCTTGAACCTGAAAGAAAAGAGAAGCTTGCCATTGAACTTGGGTTGCAGCCTAGACAAGTAGCTGTTTGGTTCCAAAACAGGAGAGCAAGATGGAAGAACAAGCAGTTGGAAAGAGATTATGGTGTTCTTAAAGCTAATTATGATGCTCTTAAGCTCAAGTTTGATGCAATTGCTCAAGACAACAAAGCTTTTCACAAGGAGGTATAAACATCTATAATCCACAGTAGTAACTTAACTATAATTTAGTTTCTGAAGTTATAAGTGCAATAACAACTTAATTAAGTGTTTATAGCATAATCACTTATCATTTAAGTACTTTCGAATAAGCTACTTCATAATATAAGATAGAATAAAGTCACTAGTCAAACTATTTTCATGTAAGTTATTAGTTGTTTTCATAAATTATTCTAAAGCGCTTGTGAAAATAAGCTAAAAACAACTTATTTATAAGTTGTTTCTATAAAAAACAACTTATTTGATATATCAATTCACAGATTTTTAAGCTGTTGTGTTATTTAGTGTATGTTTGGATTGGCAGTGAATTTAGCAAAATCACTTTGGCACTTGAATTTGTAAAGCTATGTCCTCTTGTGAAAGTACTTGATCTTAGTTATGAAATTGTAGGCAAGTATTTAACTTTTCTAGGAACAAATGTATCATAAATTTGAAGTTATTATTGAAAGTGTGTGATTAATTTTCTCTCAAAAACAGAAAGTTGATTGATTTGTTGTATTTACAGATTAAGGAATTGAAATCAAAGCTTGGAGAAGAAGAAAAAAGCACAATCAATGTTTTGGTGAAGGAGGAGTTAACCATGCTTGAATCTTGTGATGAAGACAAGCATAACCCATCTTCAGAAACATCAATTCCTAGTTCAGAATCCAAAGATCAATTGGATTATGACTGCATAATCAACAACAATGATGTTGGTATTGGTGAAACTTCTTCACTCTTTCCAGTAGACTTGAAAGACGGTTCTTCGGACAGCGACTCCAGCGCAATTTCTTCATCCGGGGTTCTTCAGAGTCAGCAGCACCTTTTGTTGTCTCCTGAATCTTCCTCCATGAATTGTTTCCAGTACCAGAAATCTTATCATGTGAAGATGGAGGAGCACAATTTCTTAAGTGCCGATGAGGCGTGCAACTTTTTCTCGGACGAGCAAGCACCAACCCTACAATGGTACTGTCCTGACCAGTGGAGTTAA

Protein sequence

>MS.gene79202.t1

RNIVQGTNMCMVWSFNQUCWMDLKKKGVLKKLVIILRRTKTLRUKTSLNLKEKRSLPLNLGCSLDKULFGSKTGEQDGRTSSWKEIMVFLKLIMMLLSSSLMQLLKTTKLFTRRLRNUNQSLEKKKKAQSMFWURRSUPCLNLVMKTSITHLQKHQFLVQNPKINWIMTAUSTTMMLVLVKLLHSFQUTUKTVLRTATPAQFLHPGFFRVSSTFCCLLNLPPUIVSSTRNLIMURWRSTISUVPMRRATFSRTSKHQPYNGTVLTSGV