AlfalfaGEDB | MS.gene81792

M. sativa cultivar XinJiangDaYe / MS.gene81792

KEGG: K03695
GO: -
PFAM: PF10431.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81792.t1	XP_013447976.1	90.2	92	8	1	1	92	816	906	3.10E-37	164.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81792.t1	Q6F2Y7	69.6	79	24	0	1	79	814	892	1.2e-24	113.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81792.t1	A0A072TYS6	90.2	92	8	1	1	92	816	906	2.2e-37	164.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene81792	0.819005	1.46E-52	-1.69E-46
MS.gene049435	MS.gene81792	0.803548	3.31E-49	-1.69E-46
MS.gene049501	MS.gene81792	0.811483	6.84E-51	-1.69E-46
MS.gene050026	MS.gene81792	0.820342	7.22E-53	-1.69E-46
MS.gene050156	MS.gene81792	0.806401	8.38E-50	-1.69E-46
MS.gene050442	MS.gene81792	0.80618	9.32E-50	-1.69E-46
MS.gene050719	MS.gene81792	0.816465	5.45E-52	-1.69E-46
MS.gene050721	MS.gene81792	0.811467	6.90E-51	-1.69E-46
MS.gene050724	MS.gene81792	0.807913	4.01E-50	-1.69E-46
MS.gene050750	MS.gene81792	0.835399	1.72E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81792.t1	MTR_7g028970	90.217	92	8	1	1	92	816	906	3.24e-49	166
MS.gene81792.t1	MTR_4g109450	89.610	77	8	0	1	77	816	892	1.28e-41	144
MS.gene81792.t1	MTR_7g096480	84.722	72	11	0	1	72	172	243	5.51e-37	124
MS.gene81792.t1	MTR_2g006950	75.641	78	19	0	1	78	510	587	2.59e-32	117
MS.gene81792.t1	MTR_2g099075	67.213	61	19	1	1	60	411	471	2.48e-19	81.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81792.t1	AT1G74310	69.231	78	21	2	1	78	813	887	5.15e-29	108
MS.gene81792.t1	AT4G14675	51.923	52	25	0	1	52	65	116	1.65e-15	67.4

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Find 18 sgRNAs with CRISPR-Local

Find 22 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGTGGCTTGAGAAGAATG+TGG	0.734759	7.2:-70737967	MS.gene81792:CDS
AAGTGAATTGTTATACCGTG+TGG	0.624493	7.2:-70737865	MS.gene81792:CDS
ACAACTGTATGCATTGATGC+TGG	0.605777	7.2:-70737897	MS.gene81792:CDS
ACCGTGTGGAAAAGAATGGA+GGG	0.604577	7.2:-70737851	MS.gene81792:CDS
ATGCATTGATGCTGGTCCTA+AGG	0.506976	7.2:-70737889	MS.gene81792:CDS
ATGGTGCTAGACCAATTAGA+AGG	0.648738	7.2:-70737986	MS.gene81792:CDS
GAAAATGGATATGAGGTCAT+TGG	0.492246	7.2:-70737756	MS.gene81792:CDS
GCTATCTATGATGCTTATAA+AGG	0.353907	7.2:-70737937	MS.gene81792:CDS
GGGATTGTCGATGCTGAAAC+TGG	0.476416	7.2:-70737831	MS.gene81792:CDS
GGTCATTGGCGATGATGAAA+TGG	0.512438	7.2:-70737742	MS.gene81792:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCTATCTATGATGCTTATAA+AGG	-	chr7.2:70737787-70737806	MS.gene81792:CDS	30.0%
TATAACAATTCACTTCCCTT+AGG	+	chr7.2:70737854-70737873	None:intergenic	30.0%
AAGTGAATTGTTATACCGTG+TGG	-	chr7.2:70737859-70737878	MS.gene81792:CDS	35.0%
CCAAAAACTGACGATGAAAA+TGG	-	chr7.2:70737953-70737972	MS.gene81792:CDS	35.0%
GAAAATGGATATGAGGTCAT+TGG	-	chr7.2:70737968-70737987	MS.gene81792:CDS	35.0%
TGACGATGAAAATGGATATG+AGG	-	chr7.2:70737961-70737980	MS.gene81792:CDS	35.0%
TTATACCGTGTGGAAAAGAA+TGG	-	chr7.2:70737869-70737888	MS.gene81792:CDS	35.0%
TTCTCAAGCCACCTTCTAAT+TGG	+	chr7.2:70737752-70737771	None:intergenic	40.0%
AAGGTGGCTTGAGAAGAATG+TGG	-	chr7.2:70737757-70737776	MS.gene81792:CDS	45.0%
ACCGTGTGGAAAAGAATGGA+GGG	-	chr7.2:70737873-70737892	MS.gene81792:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	70737734	70738012	70737734	ID=MS.gene81792
chr7.2	mRNA	70737734	70738012	70737734	ID=MS.gene81792.t1;Parent=MS.gene81792
chr7.2	exon	70737734	70738012	70737734	ID=MS.gene81792.t1.exon1;Parent=MS.gene81792.t1
chr7.2	CDS	70737734	70738012	70737734	ID=cds.MS.gene81792.t1;Parent=MS.gene81792.t1

Gene Sequence	>MS.gene81792 GTGTATGGTGCTAGACCAATTAGAAGGTGGCTTGAGAAGAATGTGGTGACAGAGCTATCTATGATGCTTATAAAGGAAGAAATTGATGAGAATACAACTGTATGCATTGATGCTGGTCCTAAGGGAAGTGAATTGTTATACCGTGTGGAAAAGAATGGAGGGATTGTCGATGCTGAAACTGGTGTGAAGTCAGATATTTTAATTCAGATACCAAATGGACCAAAAACTGACGATGAAAATGGATATGAGGTCATTGGCGATGATGAAATGGAAGAATAA
Protein sequence	>MS.gene81792.t1 VYGARPIRRWLEKNVVTELSMMLIKEEIDENTTVCIDAGPKGSELLYRVEKNGGIVDAETGVKSDILIQIPNGPKTDDENGYEVIGDDEMEE