AlfalfaGEDB | MS.gene82356

M. sativa cultivar XinJiangDaYe / MS.gene82356

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82356.t1	KEH30814.1	77.3	75	6	1	11	74	26	100	4.90E-09	70.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82356.t1	A0A072UM07	77.3	75	6	1	11	74	26	100	3.5e-09	70.1

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene82356	0.826525	2.59E-54	-1.69E-46
MS.gene049633	MS.gene82356	0.819216	1.30E-52	-1.69E-46
MS.gene050323	MS.gene82356	0.812816	3.50E-51	-1.69E-46
MS.gene050338	MS.gene82356	-0.840786	7.05E-58	-1.69E-46
MS.gene050444	MS.gene82356	0.832176	1.10E-55	-1.69E-46
MS.gene050612	MS.gene82356	0.80953	1.81E-50	-1.69E-46
MS.gene050710	MS.gene82356	-0.817945	2.53E-52	-1.69E-46
MS.gene05080	MS.gene82356	0.817932	2.55E-52	-1.69E-46
MS.gene050809	MS.gene82356	-0.824128	9.55E-54	-1.69E-46
MS.gene05081	MS.gene82356	0.829515	4.93E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82356.t1	MTR_4g082883	77.333	75	6	1	11	74	26	100	2.38e-32	107
MS.gene82356.t1	MTR_4g082900	55.172	58	26	0	16	73	24	81	8.77e-15	62.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 16 sgRNAs with CRISPR-Local

Find 22 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCGAAGGTGTGATTGG+TGG	0.660272	4.2:-26780897	MS.gene82356:CDS
AAAGAAACAATGGCATCAAC+TGG	0.442857	4.2:-26781071	None:intergenic
ACCAATCACACCTTCGGGTT+TGG	0.373855	4.2:+26780899	None:intergenic
AGCACCACCAATCACACCTT+CGG	0.387425	4.2:+26780893	None:intergenic
ATCACACCTTCGGGTTTGGC+TGG	0.446616	4.2:+26780903	None:intergenic
CGTAGGAGAGTATGCTACCA+AGG	0.632082	4.2:-26780958	MS.gene82356:CDS
CTGGACAAAATCAGCAGCCT+TGG	0.492880	4.2:+26780941	None:intergenic
CTGGCTCTTCTGGTTTGGAC+TGG	0.372877	4.2:+26780922	None:intergenic
CTTGGTAGCATACTCTCCTA+CGG	0.606883	4.2:+26780959	None:intergenic
GAAGAGCCAGCCAAACCCGA+AGG	0.622241	4.2:-26780909	MS.gene82356:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	ACCTGCCAAAAAATCGTTAT+TGG	+	chr4.2:26780879-26780898	None:intergenic	35.0%
	CCTGCCAAAAAATCGTTATT+GGG	+	chr4.2:26780878-26780897	None:intergenic	35.0%
	GCTTCAGCACAAACAACTAT+AGG	-	chr4.2:26780914-26780933	MS.gene82356:CDS	40.0%
	GCTAATGTTCAGAAGACCGT+AGG	-	chr4.2:26780947-26780966	MS.gene82356:CDS	45.0%
	GGTGCTAAAAATGCTGTTGG+AGG	-	chr4.2:26781046-26781065	MS.gene82356:CDS	45.0%
	AGCACCACCAATCACACCTT+CGG	+	chr4.2:26781032-26781051	None:intergenic	50.0%
	CTGGACAAAATCAGCAGCCT+TGG	+	chr4.2:26780984-26781003	None:intergenic	50.0%
	GCACCACCAATCACACCTTC+GGG	+	chr4.2:26781031-26781050	None:intergenic	55.0%
	GAAGAGCCAGCCAAACCCGA+AGG	-	chr4.2:26781013-26781032	MS.gene82356:CDS	60.0%
!	CTTGGTAGCATACTCTCCTA+CGG	+	chr4.2:26780966-26780985	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	26780860	26781084	26780860	ID=MS.gene82356
chr4.2	mRNA	26780860	26781084	26780860	ID=MS.gene82356.t1;Parent=MS.gene82356
chr4.2	exon	26780860	26781084	26780860	ID=MS.gene82356.t1.exon1;Parent=MS.gene82356.t1
chr4.2	CDS	26780860	26781084	26780860	ID=cds.MS.gene82356.t1;Parent=MS.gene82356.t1

Gene Sequence	>MS.gene82356 ATGGCATCAACTGGACCCAATAACGATTTTTTGGCAGGTGCAAAGGATGCAGCAGCTTCAGCACAAACAACTATAGGAGATGCTGCAGCTAATGTTCAGAAGACCGTAGGAGAGTATGCTACCAAGGCTGCTGATTTTGTCCAGTCCAAACCAGAAGAGCCAGCCAAACCCGAAGGTGTGATTGGTGGTGCTAAAAATGCTGTTGGAGGCTTATTTAAGAAATGA
Protein sequence	>MS.gene82356.t1 MASTGPNNDFLAGAKDAAASAQTTIGDAAANVQKTVGEYATKAADFVQSKPEEPAKPEGVIGGAKNAVGGLFKK