Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85164.t1 | KEH39543.1 | 86.7 | 271 | 32 | 4 | 1 | 270 | 1 | 268 | 7.10E-114 | 420.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85164.t1 | Q8LAL2 | 49.8 | 253 | 102 | 4 | 7 | 259 | 28 | 255 | 1.3e-55 | 218.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85164.t1 | A0A072VDM5 | 86.7 | 271 | 32 | 4 | 1 | 270 | 1 | 268 | 5.1e-114 | 420.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene85164.t1 | TR | AUX/IAA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene85164 | 0.825869 | 3.71E-54 | -1.69E-46 |
| MS.gene049350 | MS.gene85164 | 0.827743 | 1.32E-54 | -1.69E-46 |
| MS.gene049404 | MS.gene85164 | 0.802054 | 6.73E-49 | -1.69E-46 |
| MS.gene049672 | MS.gene85164 | 0.802019 | 6.84E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene85164 | 0.849212 | 3.74E-60 | -1.69E-46 |
| MS.gene049824 | MS.gene85164 | 0.803303 | 3.72E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene85164 | 0.832693 | 8.17E-56 | -1.69E-46 |
| MS.gene05045 | MS.gene85164 | 0.808797 | 2.60E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene85164 | 0.819733 | 9.95E-53 | -1.69E-46 |
| MS.gene050561 | MS.gene85164 | 0.817612 | 3.01E-52 | -1.69E-46 |
| MS.gene050562 | MS.gene85164 | 0.813333 | 2.70E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene85164 | 0.821004 | 5.08E-53 | -1.69E-46 |
| MS.gene050901 | MS.gene85164 | 0.815755 | 7.86E-52 | -1.69E-46 |
| MS.gene051018 | MS.gene85164 | 0.840459 | 8.59E-58 | -1.69E-46 |
| MS.gene051021 | MS.gene85164 | 0.81524 | 1.02E-51 | -1.69E-46 |
| MS.gene051247 | MS.gene85164 | 0.81163 | 6.36E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene85164 | 0.872554 | 2.91E-67 | -1.69E-46 |
| MS.gene05157 | MS.gene85164 | 0.845181 | 4.77E-59 | -1.69E-46 |
| MS.gene051664 | MS.gene85164 | 0.847845 | 8.94E-60 | -1.69E-46 |
| MS.gene051719 | MS.gene85164 | 0.863906 | 1.78E-64 | -1.69E-46 |
| MS.gene051720 | MS.gene85164 | 0.895478 | 9.23E-76 | -1.69E-46 |
| MS.gene051744 | MS.gene85164 | 0.818642 | 1.76E-52 | -1.69E-46 |
| MS.gene052016 | MS.gene85164 | 0.833852 | 4.20E-56 | -1.69E-46 |
| MS.gene052463 | MS.gene85164 | 0.818717 | 1.69E-52 | -1.69E-46 |
| MS.gene052516 | MS.gene85164 | 0.82954 | 4.86E-55 | -1.69E-46 |
| MS.gene052519 | MS.gene85164 | 0.800578 | 1.35E-48 | -1.69E-46 |
| MS.gene052582 | MS.gene85164 | 0.802441 | 5.60E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene85164 | 0.810939 | 8.98E-51 | -1.69E-46 |
| MS.gene052665 | MS.gene85164 | 0.804501 | 2.10E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene85164 | 0.832609 | 8.57E-56 | -1.69E-46 |
| MS.gene053226 | MS.gene85164 | 0.842379 | 2.68E-58 | -1.69E-46 |
| MS.gene053536 | MS.gene85164 | 0.813179 | 2.92E-51 | -1.69E-46 |
| MS.gene053538 | MS.gene85164 | 0.806397 | 8.39E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene85164 | 0.827545 | 1.48E-54 | -1.69E-46 |
| MS.gene053599 | MS.gene85164 | 0.816251 | 6.09E-52 | -1.69E-46 |
| MS.gene05364 | MS.gene85164 | 0.803711 | 3.06E-49 | -1.69E-46 |
| MS.gene054142 | MS.gene85164 | 0.808317 | 3.29E-50 | -1.69E-46 |
| MS.gene054178 | MS.gene85164 | 0.804001 | 2.66E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene85164 | 0.821237 | 4.49E-53 | -1.69E-46 |
| MS.gene054584 | MS.gene85164 | 0.838132 | 3.45E-57 | -1.69E-46 |
| MS.gene05458 | MS.gene85164 | 0.804429 | 2.17E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene85164 | 0.819591 | 1.07E-52 | -1.69E-46 |
| MS.gene054991 | MS.gene85164 | 0.802048 | 6.75E-49 | -1.69E-46 |
| MS.gene055144 | MS.gene85164 | 0.820887 | 5.41E-53 | -1.69E-46 |
| MS.gene055465 | MS.gene85164 | 0.877906 | 4.32E-69 | -1.69E-46 |
| MS.gene055466 | MS.gene85164 | 0.876958 | 9.23E-69 | -1.69E-46 |
| MS.gene055468 | MS.gene85164 | 0.854096 | 1.55E-61 | -1.69E-46 |
| MS.gene055469 | MS.gene85164 | 0.82955 | 4.83E-55 | -1.69E-46 |
| MS.gene055513 | MS.gene85164 | 0.809393 | 1.94E-50 | -1.69E-46 |
| MS.gene055537 | MS.gene85164 | 0.857282 | 1.82E-62 | -1.69E-46 |
| MS.gene055580 | MS.gene85164 | -0.829622 | 4.64E-55 | -1.69E-46 |
| MS.gene056005 | MS.gene85164 | 0.821562 | 3.78E-53 | -1.69E-46 |
| MS.gene056043 | MS.gene85164 | -0.801457 | 8.92E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene85164 | 0.803622 | 3.19E-49 | -1.69E-46 |
| MS.gene056169 | MS.gene85164 | 0.804467 | 2.13E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene85164 | 0.811385 | 7.19E-51 | -1.69E-46 |
| MS.gene056215 | MS.gene85164 | 0.808538 | 2.95E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene85164 | 0.835711 | 1.43E-56 | -1.69E-46 |
| MS.gene056366 | MS.gene85164 | 0.8034 | 3.55E-49 | -1.69E-46 |
| MS.gene056595 | MS.gene85164 | 0.802556 | 5.30E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene85164 | 0.802998 | 4.30E-49 | -1.69E-46 |
| MS.gene057082 | MS.gene85164 | 0.817163 | 3.80E-52 | -1.69E-46 |
| MS.gene057294 | MS.gene85164 | 0.816007 | 6.90E-52 | -1.69E-46 |
| MS.gene057444 | MS.gene85164 | 0.801995 | 6.92E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene85164 | 0.811253 | 7.68E-51 | -1.69E-46 |
| MS.gene058087 | MS.gene85164 | 0.822872 | 1.88E-53 | -1.69E-46 |
| MS.gene058339 | MS.gene85164 | 0.818593 | 1.81E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene85164 | 0.82653 | 2.58E-54 | -1.69E-46 |
| MS.gene058649 | MS.gene85164 | 0.817211 | 3.71E-52 | -1.69E-46 |
| MS.gene058668 | MS.gene85164 | 0.815987 | 6.97E-52 | -1.69E-46 |
| MS.gene05894 | MS.gene85164 | 0.831943 | 1.25E-55 | -1.69E-46 |
| MS.gene059570 | MS.gene85164 | 0.811377 | 7.22E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene85164 | 0.835665 | 1.47E-56 | -1.69E-46 |
| MS.gene060519 | MS.gene85164 | 0.862829 | 3.84E-64 | -1.69E-46 |
| MS.gene060587 | MS.gene85164 | 0.817574 | 3.07E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85164.t1 | MTR_2g100780 | 94.465 | 271 | 11 | 4 | 1 | 270 | 1 | 268 | 3.37e-178 | 491 |
| MS.gene85164.t1 | MTR_2g100780 | 94.275 | 262 | 11 | 4 | 1 | 261 | 1 | 259 | 3.65e-171 | 473 |
| MS.gene85164.t1 | MTR_8g014520 | 54.545 | 275 | 97 | 9 | 6 | 263 | 4 | 267 | 9.74e-82 | 247 |
| MS.gene85164.t1 | MTR_8g014520 | 54.779 | 272 | 95 | 9 | 6 | 260 | 4 | 264 | 2.80e-81 | 246 |
| MS.gene85164.t1 | MTR_6g488150 | 37.959 | 245 | 119 | 8 | 18 | 256 | 21 | 238 | 6.28e-40 | 139 |
| MS.gene85164.t1 | MTR_1g069495 | 40.678 | 177 | 85 | 3 | 96 | 256 | 80 | 252 | 9.64e-38 | 134 |
| MS.gene85164.t1 | MTR_5g030710 | 42.135 | 178 | 81 | 5 | 80 | 256 | 163 | 319 | 9.11e-35 | 128 |
| MS.gene85164.t1 | MTR_8g103030 | 44.937 | 158 | 66 | 3 | 99 | 256 | 141 | 277 | 1.29e-34 | 126 |
| MS.gene85164.t1 | MTR_2g101500 | 43.678 | 174 | 75 | 5 | 86 | 256 | 157 | 310 | 1.69e-34 | 127 |
| MS.gene85164.t1 | MTR_1g070520 | 33.725 | 255 | 135 | 6 | 4 | 256 | 7 | 229 | 4.81e-34 | 124 |
| MS.gene85164.t1 | MTR_8g067530 | 39.894 | 188 | 90 | 5 | 70 | 256 | 175 | 340 | 5.45e-32 | 121 |
| MS.gene85164.t1 | MTR_5g067350 | 42.169 | 166 | 70 | 6 | 94 | 256 | 189 | 331 | 1.91e-31 | 119 |
| MS.gene85164.t1 | MTR_1g080860 | 38.728 | 173 | 88 | 4 | 84 | 256 | 83 | 237 | 6.88e-31 | 115 |
| MS.gene85164.t1 | MTR_1g080860 | 38.728 | 173 | 88 | 4 | 84 | 256 | 83 | 237 | 7.48e-31 | 115 |
| MS.gene85164.t1 | MTR_1g093240 | 40.000 | 165 | 78 | 4 | 92 | 256 | 77 | 220 | 7.42e-30 | 112 |
| MS.gene85164.t1 | MTR_1g093240 | 35.500 | 200 | 108 | 4 | 57 | 256 | 42 | 220 | 7.47e-30 | 112 |
| MS.gene85164.t1 | MTR_1g040675 | 31.557 | 244 | 100 | 6 | 13 | 256 | 2 | 178 | 1.36e-26 | 102 |
| MS.gene85164.t1 | MTR_7g096090 | 37.572 | 173 | 85 | 3 | 84 | 256 | 85 | 234 | 4.75e-26 | 103 |
| MS.gene85164.t1 | MTR_1g076270 | 36.628 | 172 | 60 | 6 | 87 | 256 | 50 | 174 | 2.32e-25 | 99.4 |
| MS.gene85164.t1 | MTR_1g093350 | 36.628 | 172 | 60 | 6 | 87 | 256 | 50 | 174 | 2.32e-25 | 99.4 |
| MS.gene85164.t1 | MTR_1g070830 | 29.752 | 242 | 105 | 7 | 18 | 256 | 18 | 197 | 2.06e-24 | 97.4 |
| MS.gene85164.t1 | MTR_1g093240 | 38.255 | 149 | 71 | 4 | 92 | 240 | 77 | 204 | 2.17e-22 | 92.0 |
| MS.gene85164.t1 | MTR_4g124300 | 40.000 | 105 | 46 | 2 | 150 | 254 | 94 | 181 | 2.01e-20 | 86.3 |
| MS.gene85164.t1 | MTR_7g110790 | 35.606 | 132 | 62 | 5 | 125 | 253 | 44 | 155 | 3.91e-20 | 85.1 |
| MS.gene85164.t1 | MTR_6g488150 | 34.483 | 174 | 83 | 6 | 18 | 185 | 21 | 169 | 6.62e-19 | 82.4 |
| MS.gene85164.t1 | MTR_1g085750 | 34.014 | 147 | 65 | 6 | 125 | 260 | 49 | 174 | 1.14e-18 | 81.6 |
| MS.gene85164.t1 | MTR_4g011880 | 31.707 | 164 | 58 | 4 | 99 | 260 | 55 | 166 | 2.15e-18 | 80.9 |
| MS.gene85164.t1 | MTR_1g040675 | 29.515 | 227 | 93 | 6 | 13 | 239 | 2 | 161 | 2.99e-18 | 80.1 |
| MS.gene85164.t1 | MTR_2g102490 | 39.048 | 105 | 54 | 2 | 152 | 255 | 88 | 183 | 1.35e-17 | 79.0 |
| MS.gene85164.t1 | MTR_4g115075 | 29.299 | 157 | 69 | 4 | 98 | 254 | 92 | 206 | 2.40e-17 | 78.6 |
| MS.gene85164.t1 | MTR_3g106850 | 29.114 | 158 | 75 | 5 | 99 | 256 | 89 | 209 | 8.45e-15 | 71.6 |
| MS.gene85164.t1 | MTR_1g085750 | 31.746 | 126 | 57 | 5 | 125 | 239 | 49 | 156 | 3.74e-12 | 63.2 |
| MS.gene85164.t1 | MTR_5g067350 | 38.947 | 95 | 37 | 3 | 94 | 185 | 189 | 265 | 7.63e-12 | 64.3 |
| MS.gene85164.t1 | MTR_1g109510 | 34.314 | 102 | 49 | 2 | 152 | 253 | 85 | 168 | 6.17e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85164.t1 | AT3G16500 | 55.020 | 249 | 87 | 4 | 11 | 259 | 32 | 255 | 1.04e-81 | 247 |
| MS.gene85164.t1 | AT3G16500 | 55.020 | 249 | 87 | 4 | 11 | 259 | 32 | 255 | 1.43e-81 | 246 |
| MS.gene85164.t1 | AT1G51950 | 49.600 | 250 | 91 | 5 | 12 | 259 | 37 | 253 | 9.08e-71 | 219 |
| MS.gene85164.t1 | AT5G25890 | 37.449 | 243 | 69 | 6 | 13 | 255 | 3 | 162 | 4.00e-38 | 132 |
| MS.gene85164.t1 | AT4G28640 | 42.775 | 173 | 80 | 5 | 92 | 256 | 76 | 237 | 1.15e-35 | 128 |
| MS.gene85164.t1 | AT4G28640 | 42.775 | 173 | 80 | 5 | 92 | 256 | 76 | 237 | 1.16e-35 | 128 |
| MS.gene85164.t1 | AT4G28640 | 42.775 | 173 | 80 | 5 | 92 | 256 | 76 | 237 | 6.88e-35 | 127 |
| MS.gene85164.t1 | AT4G29080 | 36.330 | 267 | 127 | 13 | 15 | 256 | 41 | 289 | 2.06e-34 | 126 |
| MS.gene85164.t1 | AT2G33310 | 44.379 | 169 | 65 | 6 | 99 | 256 | 76 | 226 | 3.80e-34 | 124 |
| MS.gene85164.t1 | AT2G33310 | 44.379 | 169 | 65 | 6 | 99 | 256 | 76 | 226 | 3.80e-34 | 124 |
| MS.gene85164.t1 | AT2G33310 | 44.379 | 169 | 65 | 6 | 99 | 256 | 77 | 227 | 3.97e-34 | 124 |
| MS.gene85164.t1 | AT1G04550 | 40.860 | 186 | 94 | 6 | 81 | 261 | 50 | 224 | 1.47e-33 | 122 |
| MS.gene85164.t1 | AT1G04100 | 40.741 | 162 | 88 | 4 | 100 | 255 | 95 | 254 | 5.82e-32 | 119 |
| MS.gene85164.t1 | AT2G22670 | 41.718 | 163 | 75 | 4 | 94 | 256 | 161 | 303 | 1.62e-31 | 119 |
| MS.gene85164.t1 | AT2G22670 | 41.718 | 163 | 75 | 4 | 94 | 256 | 161 | 303 | 1.62e-31 | 119 |
| MS.gene85164.t1 | AT2G22670 | 41.718 | 163 | 75 | 4 | 94 | 256 | 161 | 303 | 1.68e-31 | 119 |
| MS.gene85164.t1 | AT2G22670 | 41.718 | 163 | 75 | 4 | 94 | 256 | 161 | 303 | 1.68e-31 | 119 |
| MS.gene85164.t1 | AT2G22670 | 41.718 | 163 | 75 | 4 | 94 | 256 | 178 | 320 | 2.30e-31 | 119 |
| MS.gene85164.t1 | AT1G04250 | 33.471 | 242 | 123 | 5 | 15 | 256 | 10 | 213 | 1.68e-30 | 114 |
| MS.gene85164.t1 | AT5G65670 | 37.056 | 197 | 100 | 6 | 61 | 256 | 147 | 320 | 1.80e-30 | 116 |
| MS.gene85164.t1 | AT5G65670 | 37.056 | 197 | 100 | 6 | 61 | 256 | 147 | 320 | 2.05e-30 | 116 |
| MS.gene85164.t1 | AT3G04730 | 34.167 | 240 | 130 | 8 | 18 | 256 | 8 | 220 | 9.49e-30 | 112 |
| MS.gene85164.t1 | AT4G14550 | 35.567 | 194 | 102 | 5 | 77 | 270 | 56 | 226 | 2.69e-28 | 108 |
| MS.gene85164.t1 | AT3G23050 | 38.788 | 165 | 87 | 3 | 92 | 256 | 76 | 226 | 2.82e-28 | 108 |
| MS.gene85164.t1 | AT4G14550 | 37.778 | 180 | 89 | 5 | 77 | 256 | 56 | 212 | 8.35e-28 | 107 |
| MS.gene85164.t1 | AT3G15540 | 31.518 | 257 | 102 | 9 | 8 | 260 | 2 | 188 | 6.34e-27 | 103 |
| MS.gene85164.t1 | AT1G04240 | 30.612 | 196 | 85 | 5 | 71 | 256 | 27 | 181 | 1.99e-25 | 99.8 |
| MS.gene85164.t1 | AT1G04240 | 30.612 | 196 | 85 | 5 | 71 | 256 | 127 | 281 | 1.99e-24 | 99.8 |
| MS.gene85164.t1 | AT5G43700 | 32.022 | 178 | 75 | 4 | 86 | 260 | 47 | 181 | 2.70e-24 | 96.7 |
| MS.gene85164.t1 | AT3G23030 | 34.568 | 162 | 54 | 5 | 99 | 260 | 61 | 170 | 1.47e-21 | 89.4 |
| MS.gene85164.t1 | AT1G52830 | 30.453 | 243 | 99 | 10 | 18 | 260 | 12 | 184 | 4.47e-21 | 88.2 |
| MS.gene85164.t1 | AT3G23030 | 34.568 | 162 | 54 | 5 | 99 | 260 | 148 | 257 | 6.17e-21 | 89.7 |
| MS.gene85164.t1 | AT3G23050 | 36.913 | 149 | 80 | 3 | 92 | 240 | 76 | 210 | 1.17e-20 | 87.8 |
| MS.gene85164.t1 | AT4G14550 | 37.162 | 148 | 71 | 4 | 92 | 239 | 70 | 195 | 2.86e-20 | 86.3 |
| MS.gene85164.t1 | AT3G17600 | 37.736 | 106 | 45 | 2 | 148 | 253 | 70 | 154 | 3.45e-19 | 82.4 |
| MS.gene85164.t1 | AT2G46990 | 38.462 | 104 | 47 | 2 | 151 | 254 | 85 | 171 | 9.33e-19 | 81.6 |
| MS.gene85164.t1 | AT3G62100 | 37.500 | 104 | 48 | 2 | 151 | 254 | 83 | 169 | 1.16e-18 | 81.3 |
| MS.gene85164.t1 | AT1G15580 | 30.573 | 157 | 54 | 4 | 99 | 253 | 54 | 157 | 1.40e-16 | 75.5 |
| MS.gene85164.t1 | AT4G14560 | 32.948 | 173 | 62 | 5 | 88 | 256 | 41 | 163 | 7.13e-16 | 73.9 |
| MS.gene85164.t1 | AT4G32280 | 25.989 | 177 | 95 | 4 | 99 | 262 | 95 | 248 | 1.34e-14 | 72.0 |
| MS.gene85164.t1 | AT1G04550 | 38.938 | 113 | 64 | 4 | 81 | 188 | 50 | 162 | 4.57e-13 | 66.2 |
| MS.gene85164.t1 | AT3G62100 | 37.079 | 89 | 39 | 2 | 151 | 239 | 83 | 154 | 5.56e-13 | 65.5 |
| MS.gene85164.t1 | AT4G23980 | 34.259 | 108 | 48 | 1 | 154 | 261 | 525 | 609 | 6.53e-13 | 68.9 |
| MS.gene85164.t1 | AT4G23980 | 34.259 | 108 | 48 | 1 | 154 | 261 | 527 | 611 | 7.17e-13 | 68.6 |
| MS.gene85164.t1 | AT2G46990 | 37.079 | 89 | 39 | 2 | 151 | 239 | 85 | 156 | 1.20e-12 | 64.7 |
| MS.gene85164.t1 | AT3G23050 | 35.106 | 94 | 51 | 1 | 92 | 185 | 76 | 159 | 5.04e-12 | 63.2 |
| MS.gene85164.t1 | AT4G32280 | 29.464 | 112 | 56 | 2 | 151 | 262 | 118 | 206 | 6.90e-12 | 63.5 |
| MS.gene85164.t1 | AT2G46530 | 31.429 | 105 | 49 | 1 | 153 | 257 | 406 | 487 | 1.78e-11 | 64.3 |
| MS.gene85164.t1 | AT2G46530 | 31.429 | 105 | 49 | 1 | 153 | 257 | 493 | 574 | 2.15e-11 | 64.3 |
| MS.gene85164.t1 | AT2G46530 | 31.429 | 105 | 49 | 1 | 153 | 257 | 514 | 595 | 2.85e-11 | 63.9 |
| MS.gene85164.t1 | AT4G14550 | 36.170 | 94 | 42 | 2 | 92 | 185 | 70 | 145 | 4.29e-11 | 60.8 |
Find 50 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGTTGAGTCTGAGATTC+TGG | 0.161798 | 2.4:-3734244 | None:intergenic |
| AACATATATTAATACCTTTA+AGG | 0.163444 | 2.4:-3734441 | None:intergenic |
| GAAAGTGATTACTGGATTAT+TGG | 0.223957 | 2.4:+3735042 | MS.gene85164:CDS |
| CTCTTTAGAGGACTCCTTAA+AGG | 0.227479 | 2.4:+3734427 | MS.gene85164:CDS |
| GGCCACCAATTCGTTCATTC+AGG | 0.331363 | 2.4:+3734182 | MS.gene85164:CDS |
| GACTACAACTATAGTAATAA+AGG | 0.343834 | 2.4:+3734304 | MS.gene85164:CDS |
| GAGGAAGAGAAAGTGATTAC+TGG | 0.355323 | 2.4:+3735034 | MS.gene85164:CDS |
| CTCTACTCTCTTAGGACAAC+AGG | 0.361485 | 2.4:-3732608 | None:intergenic |
| TTCTGTAACTCTACTCTCTT+AGG | 0.365893 | 2.4:-3732616 | None:intergenic |
| TGAGAGTCTTTGTTTGTTGT+TGG | 0.370100 | 2.4:-3732506 | None:intergenic |
| TTACTATAGTTGTAGTCAAT+AGG | 0.388726 | 2.4:-3734298 | None:intergenic |
| AGGAAAGAAAGCTTGAACTA+AGG | 0.413057 | 2.4:+3732446 | MS.gene85164:CDS |
| GCTGTGGATGAGCTCTTTAG+AGG | 0.423705 | 2.4:+3734415 | MS.gene85164:CDS |
| GTCTGAGATTCTGGTTGTGA+TGG | 0.455939 | 2.4:-3734235 | None:intergenic |
| AACAAACAAAGACTCTCATT+TGG | 0.459493 | 2.4:+3732511 | MS.gene85164:CDS |
| TTCTTCCTGAATGAACGAAT+TGG | 0.461192 | 2.4:-3734187 | None:intergenic |
| CACCTGGTGTTGAAGAAGAC+TGG | 0.475839 | 2.4:+3732476 | MS.gene85164:CDS |
| AACATGGATGGTGTTCCAAT+TGG | 0.487413 | 2.4:+3734343 | MS.gene85164:CDS |
| ATGAGGATAATGAAGGAGAC+AGG | 0.490984 | 2.4:+3735092 | MS.gene85164:CDS |
| GGCCAACCCACTACTGGTCC+AGG | 0.495601 | 2.4:-3734163 | None:intergenic |
| ACTGGATTATTGGATGGAAG+TGG | 0.500145 | 2.4:+3735052 | MS.gene85164:CDS |
| ATTGGTGGCCAACCCACTAC+TGG | 0.512048 | 2.4:-3734169 | None:intergenic |
| AATGAAGATGCTTACTGCCA+TGG | 0.519355 | 2.4:-3735133 | None:intergenic |
| CTCCTGGACCAGTAGTGGGT+TGG | 0.519977 | 2.4:+3734161 | MS.gene85164:CDS |
| GTGATTACTGGATTATTGGA+TGG | 0.521970 | 2.4:+3735046 | MS.gene85164:CDS |
| TTCTCTTCAAATTCAAACAA+TGG | 0.522441 | 2.4:+3732541 | MS.gene85164:CDS |
| GAACTAAGGCTTGGTCCACC+TGG | 0.527306 | 2.4:+3732460 | MS.gene85164:CDS |
| AACAACAACAATGTTGCTGC+TGG | 0.531158 | 2.4:+3734268 | MS.gene85164:CDS |
| AGAGTATACTCTTGTATATG+AGG | 0.532161 | 2.4:+3735075 | MS.gene85164:CDS |
| AACTGCTCCTGGACCAGTAG+TGG | 0.534809 | 2.4:+3734156 | MS.gene85164:CDS |
| TTTCCAACACCTCTCAGAAA+AGG | 0.535342 | 2.4:+3732665 | MS.gene85164:CDS |
| TTCCTGAATGAACGAATTGG+TGG | 0.539764 | 2.4:-3734184 | None:intergenic |
| CTTGTATATGAGGATAATGA+AGG | 0.541105 | 2.4:+3735085 | MS.gene85164:CDS |
| AGAAAGCTTGAACTAAGGCT+TGG | 0.547085 | 2.4:+3732451 | MS.gene85164:CDS |
| ATGAAGATGCTTACTGCCAT+GGG | 0.556758 | 2.4:-3735132 | None:intergenic |
| GAAGGAGACAGGATGCTTGT+TGG | 0.558754 | 2.4:+3735103 | MS.gene85164:CDS |
| CAACGAGATTCCTCTGCTTG+TGG | 0.563383 | 2.4:+3734995 | MS.gene85164:CDS |
| CTTGTTACCACCACAAGCAG+AGG | 0.563731 | 2.4:-3735005 | None:intergenic |
| TGAAAATCTTTCTTCAGCTG+TGG | 0.566410 | 2.4:+3734399 | MS.gene85164:CDS |
| TGCTTGTTGGTGATGTCCCA+TGG | 0.568099 | 2.4:+3735116 | MS.gene85164:CDS |
| TGTTTGTATCAACAGTGAAG+AGG | 0.599382 | 2.4:+3735612 | MS.gene85164:CDS |
| ACTGCTCCTGGACCAGTAGT+GGG | 0.605389 | 2.4:+3734157 | MS.gene85164:CDS |
| CGAGATTCCTCTGCTTGTGG+TGG | 0.607101 | 2.4:+3734998 | MS.gene85164:CDS |
| AAGAGAGTAGAGTTACAGAA+TGG | 0.608229 | 2.4:+3732619 | MS.gene85164:CDS |
| AACCAGTCTTCTTCAACACC+AGG | 0.614487 | 2.4:-3732478 | None:intergenic |
| TTTGTTAAGATCAACATGGA+TGG | 0.616572 | 2.4:+3734331 | MS.gene85164:CDS |
| TGGTGGTAACAAGAAAGAAG+AGG | 0.622799 | 2.4:+3735015 | MS.gene85164:CDS |
| AAATGAGAGAGAATCTTCTG+AGG | 0.628593 | 2.4:+3732426 | MS.gene85164:CDS |
| TTTGTTTGTTAAGATCAACA+TGG | 0.679515 | 2.4:+3734327 | MS.gene85164:CDS |
| CAGTCTTCTTCAACACCAGG+TGG | 0.689120 | 2.4:-3732475 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACTAAATAATAATTTTTG+AGG | + | chr2.4:3733887-3733906 | MS.gene85164:intron | 10.0% |
| !!! | AACTAAATAATAATTTTTGA+GGG | + | chr2.4:3733888-3733907 | MS.gene85164:intron | 10.0% |
| !! | AAAACTTTAGATATAGAAAA+AGG | - | chr2.4:3732698-3732717 | None:intergenic | 15.0% |
| !! | AACATATATTAATACCTTTA+AGG | - | chr2.4:3734444-3734463 | None:intergenic | 15.0% |
| !! | AATAAAAATTCAAAGCAATA+TGG | - | chr2.4:3734905-3734924 | None:intergenic | 15.0% |
| !! | ACTATGATTGAATTTAAAAA+AGG | - | chr2.4:3734473-3734492 | None:intergenic | 15.0% |
| !! | ATATTTACAATATGTTAGTT+AGG | - | chr2.4:3733940-3733959 | None:intergenic | 15.0% |
| !! | CAAAAACTTAAAATAAAAAG+TGG | + | chr2.4:3733847-3733866 | MS.gene85164:intron | 15.0% |
| !! | CTATGATTGAATTTAAAAAA+GGG | - | chr2.4:3734472-3734491 | None:intergenic | 15.0% |
| !! | GAAAAAATATACTATAAAGA+AGG | - | chr2.4:3733099-3733118 | None:intergenic | 15.0% |
| !! | TAACATATTGTAAATATGTA+GGG | + | chr2.4:3733943-3733962 | MS.gene85164:intron | 15.0% |
| !! | TATTGTTAGAAAACTATTAT+TGG | + | chr2.4:3735531-3735550 | MS.gene85164:intron | 15.0% |
| !! | TGTACTTATATATATCATTT+GGG | + | chr2.4:3733278-3733297 | MS.gene85164:intron | 15.0% |
| !! | TTGTACTTATATATATCATT+TGG | + | chr2.4:3733277-3733296 | MS.gene85164:intron | 15.0% |
| !!! | AAATAAAAGTTTACTTTTAC+AGG | - | chr2.4:3733595-3733614 | None:intergenic | 15.0% |
| !!! | AATAAAAGTTTACTTTTACA+GGG | - | chr2.4:3733594-3733613 | None:intergenic | 15.0% |
| !!! | ATTTTTTTAATGTATGTGTT+TGG | + | chr2.4:3735584-3735603 | MS.gene85164:intron | 15.0% |
| !!! | GTTATAATTCACATTTTAAA+GGG | - | chr2.4:3733450-3733469 | None:intergenic | 15.0% |
| !!! | TAATCTATGTACTTTAAAAA+TGG | - | chr2.4:3734930-3734949 | None:intergenic | 15.0% |
| !!! | TAATTAATAATGGAAAAACA+TGG | - | chr2.4:3732877-3732896 | None:intergenic | 15.0% |
| !!! | TATTAGTTTTAATTTTTCCT+TGG | + | chr2.4:3733177-3733196 | MS.gene85164:intron | 15.0% |
| !!! | TTATAGTATATTTTTTCCTT+GGG | + | chr2.4:3733102-3733121 | MS.gene85164:intron | 15.0% |
| !!! | TTATTTTTATTTTAAGACAG+AGG | + | chr2.4:3732718-3732737 | MS.gene85164:intron | 15.0% |
| !!! | TTTATAGTATATTTTTTCCT+TGG | + | chr2.4:3733101-3733120 | MS.gene85164:intron | 15.0% |
| !! | AAATTCAACATTAATGCTTA+AGG | + | chr2.4:3734827-3734846 | MS.gene85164:intron | 20.0% |
| !! | AACACAATTGTATATTTGTA+AGG | - | chr2.4:3733623-3733642 | None:intergenic | 20.0% |
| !! | AAGTACAAAAAAGTTCAATT+GGG | + | chr2.4:3734702-3734721 | MS.gene85164:intron | 20.0% |
| !! | AATAAAGATCTCATTAGAAT+TGG | - | chr2.4:3733772-3733791 | None:intergenic | 20.0% |
| !! | CTAACATATTGTAAATATGT+AGG | + | chr2.4:3733942-3733961 | MS.gene85164:intron | 20.0% |
| !! | TAATTGTATTATTGCTAAGA+GGG | - | chr2.4:3735460-3735479 | None:intergenic | 20.0% |
| !! | TACAAATATACAATTGTGTT+TGG | + | chr2.4:3733623-3733642 | MS.gene85164:intron | 20.0% |
| !! | TTAATTGTATTATTGCTAAG+AGG | - | chr2.4:3735461-3735480 | None:intergenic | 20.0% |
| !! | TTATAAAGCTCTTTAACTAT+TGG | - | chr2.4:3734583-3734602 | None:intergenic | 20.0% |
| !!! | GCATTAGAATAAAATTTGTT+TGG | - | chr2.4:3734866-3734885 | None:intergenic | 20.0% |
| !!! | GGTTATAATTCACATTTTAA+AGG | - | chr2.4:3733451-3733470 | None:intergenic | 20.0% |
| !!! | TATAGTATATTTTTTCCTTG+GGG | + | chr2.4:3733103-3733122 | MS.gene85164:intron | 20.0% |
| ! | AATAGTAATTATGAAGCACA+AGG | - | chr2.4:3735316-3735335 | None:intergenic | 25.0% |
| ! | AATTGTATTATTGCTAAGAG+GGG | - | chr2.4:3735459-3735478 | None:intergenic | 25.0% |
| ! | AGGCATGTAGTAATTAATAA+TGG | - | chr2.4:3732887-3732906 | None:intergenic | 25.0% |
| ! | ATCATGCTTAACTTTGTAAA+TGG | + | chr2.4:3734115-3734134 | MS.gene85164:intron | 25.0% |
| ! | ATGTACTATAGCATAAGATT+AGG | - | chr2.4:3735168-3735187 | None:intergenic | 25.0% |
| ! | CAAAAATAGTTACTAGTACA+TGG | - | chr2.4:3732997-3733016 | None:intergenic | 25.0% |
| ! | GAAGTACAAAAAAGTTCAAT+TGG | + | chr2.4:3734701-3734720 | MS.gene85164:intron | 25.0% |
| ! | GACTACAACTATAGTAATAA+AGG | + | chr2.4:3734304-3734323 | MS.gene85164:CDS | 25.0% |
| ! | GATCCCTCAATATAAAATAA+GGG | - | chr2.4:3733720-3733739 | None:intergenic | 25.0% |
| ! | GTTAGAAAACTATTATTGGT+AGG | + | chr2.4:3735535-3735554 | MS.gene85164:intron | 25.0% |
| ! | TAAAAAGTGGTATATTTGCT+TGG | + | chr2.4:3733860-3733879 | MS.gene85164:intron | 25.0% |
| ! | TACATGCCTTATATAAACAT+TGG | + | chr2.4:3732898-3732917 | MS.gene85164:intron | 25.0% |
| ! | TGATCCCTCAATATAAAATA+AGG | - | chr2.4:3733721-3733740 | None:intergenic | 25.0% |
| ! | TTACTATAGTTGTAGTCAAT+AGG | - | chr2.4:3734301-3734320 | None:intergenic | 25.0% |
| ! | TTCTCTTCAAATTCAAACAA+TGG | + | chr2.4:3732541-3732560 | MS.gene85164:CDS | 25.0% |
| ! | TTTGTGCCAATGTTTATATA+AGG | - | chr2.4:3732907-3732926 | None:intergenic | 25.0% |
| !! | ATTTTTGTCGAATAATCTAG+TGG | - | chr2.4:3733472-3733491 | None:intergenic | 25.0% |
| !! | CTCTGGTTATGAATTTTAAA+TGG | - | chr2.4:3733518-3733537 | None:intergenic | 25.0% |
| !! | TAAAATTCTTATAGAGTGTC+CGG | - | chr2.4:3733320-3733339 | None:intergenic | 25.0% |
| !! | TTTGTTTGTTAAGATCAACA+TGG | + | chr2.4:3734327-3734346 | MS.gene85164:CDS | 25.0% |
| !!! | AAGCCCTTATTTTATATTGA+GGG | + | chr2.4:3733714-3733733 | MS.gene85164:intron | 25.0% |
| !!! | ACATTTTAAAGGGAATAAGT+GGG | - | chr2.4:3733440-3733459 | None:intergenic | 25.0% |
| !!! | TAAGCCCTTATTTTATATTG+AGG | + | chr2.4:3733713-3733732 | MS.gene85164:intron | 25.0% |
| !!! | TTTCTTTCATTTTGAGAGAT+AGG | + | chr2.4:3734727-3734746 | MS.gene85164:intron | 25.0% |
| AACAAACAAAGACTCTCATT+TGG | + | chr2.4:3732511-3732530 | MS.gene85164:CDS | 30.0% | |
| AACACTTGTCATAAATCATG+TGG | - | chr2.4:3735365-3735384 | None:intergenic | 30.0% | |
| AGAGTATACTCTTGTATATG+AGG | + | chr2.4:3735075-3735094 | MS.gene85164:CDS | 30.0% | |
| ATTAAATCACACTAGTTAGC+AGG | - | chr2.4:3735511-3735530 | None:intergenic | 30.0% | |
| ATTCAATCATAGTACTCATG+TGG | + | chr2.4:3734480-3734499 | MS.gene85164:intron | 30.0% | |
| CAACCACACACAAAATATAT+TGG | + | chr2.4:3732941-3732960 | MS.gene85164:intron | 30.0% | |
| CTTGTATATGAGGATAATGA+AGG | + | chr2.4:3735085-3735104 | MS.gene85164:CDS | 30.0% | |
| GAAAGTGATTACTGGATTAT+TGG | + | chr2.4:3735042-3735061 | MS.gene85164:CDS | 30.0% | |
| GACAAATTCAGATATTCACA+TGG | - | chr2.4:3733145-3733164 | None:intergenic | 30.0% | |
| GGCACATAATAAATAACAGA+TGG | - | chr2.4:3733078-3733097 | None:intergenic | 30.0% | |
| GTAGCAAAAACTCAAGATAT+GGG | - | chr2.4:3733564-3733583 | None:intergenic | 30.0% | |
| TAAACAGTGAAACTTGTAGT+AGG | - | chr2.4:3734093-3734112 | None:intergenic | 30.0% | |
| TGTAGGGTTACTATTTGATT+TGG | + | chr2.4:3733959-3733978 | MS.gene85164:intron | 30.0% | |
| TTTGAAGGGTTATGCTAAAT+AGG | + | chr2.4:3734002-3734021 | MS.gene85164:intron | 30.0% | |
| TTTGTTAAGATCAACATGGA+TGG | + | chr2.4:3734331-3734350 | MS.gene85164:CDS | 30.0% | |
| ! | AAAACCATGCTTTTACTAGT+AGG | - | chr2.4:3734759-3734778 | None:intergenic | 30.0% |
| ! | AAACCATGCTTTTACTAGTA+GGG | - | chr2.4:3734758-3734777 | None:intergenic | 30.0% |
| ! | AGATCAACTTTTCTACCAAT+TGG | - | chr2.4:3734361-3734380 | None:intergenic | 30.0% |
| ! | ATATATTTTGTGTGTGGTTG+AGG | - | chr2.4:3732941-3732960 | None:intergenic | 30.0% |
| ! | TTGCCAATATATTTTGTGTG+TGG | - | chr2.4:3732947-3732966 | None:intergenic | 30.0% |
| !! | ATTTGATTTGGATGAGTGAT+TGG | + | chr2.4:3733971-3733990 | MS.gene85164:intron | 30.0% |
| !! | CACATTTTAAAGGGAATAAG+TGG | - | chr2.4:3733441-3733460 | None:intergenic | 30.0% |
| !! | TTTACTTTTACAGGGACTAA+AGG | - | chr2.4:3733586-3733605 | None:intergenic | 30.0% |
| !!! | ATACCCATTTTTTAATGACG+AGG | - | chr2.4:3733205-3733224 | None:intergenic | 30.0% |
| !!! | TACCCATTTTTTAATGACGA+GGG | - | chr2.4:3733204-3733223 | None:intergenic | 30.0% |
| !!! | TGTTTTTTCTCCTACTATTG+TGG | + | chr2.4:3732763-3732782 | MS.gene85164:intron | 30.0% |
| AAATGAGAGAGAATCTTCTG+AGG | + | chr2.4:3732426-3732445 | MS.gene85164:CDS | 35.0% | |
| AAGAGAGTAGAGTTACAGAA+TGG | + | chr2.4:3732619-3732638 | MS.gene85164:CDS | 35.0% | |
| AGACATCTCTGAATCAAACA+TGG | - | chr2.4:3733039-3733058 | None:intergenic | 35.0% | |
| AGGAAAGAAAGCTTGAACTA+AGG | + | chr2.4:3732446-3732465 | MS.gene85164:CDS | 35.0% | |
| GGTAGCAAAAACTCAAGATA+TGG | - | chr2.4:3733565-3733584 | None:intergenic | 35.0% | |
| GTCCCTCGTCATTAAAAAAT+GGG | + | chr2.4:3733199-3733218 | MS.gene85164:intron | 35.0% | |
| GTGATTACTGGATTATTGGA+TGG | + | chr2.4:3735046-3735065 | MS.gene85164:CDS | 35.0% | |
| TAAAAACATTGACCACACGA+CGG | - | chr2.4:3734507-3734526 | None:intergenic | 35.0% | |
| TGAAAATCTTTCTTCAGCTG+TGG | + | chr2.4:3734399-3734418 | MS.gene85164:CDS | 35.0% | |
| TGTTTGTATCAACAGTGAAG+AGG | + | chr2.4:3735612-3735631 | MS.gene85164:CDS | 35.0% | |
| TTCATCAACGTGTTTCGATA+CGG | + | chr2.4:3734545-3734564 | MS.gene85164:intron | 35.0% | |
| TTCTGTAACTCTACTCTCTT+AGG | - | chr2.4:3732619-3732638 | None:intergenic | 35.0% | |
| TTCTTCCTGAATGAACGAAT+TGG | - | chr2.4:3734190-3734209 | None:intergenic | 35.0% | |
| TTGGATGAGTGATTGGATTT+GGG | + | chr2.4:3733978-3733997 | MS.gene85164:intron | 35.0% | |
| TTTGGATGAGTGATTGGATT+TGG | + | chr2.4:3733977-3733996 | MS.gene85164:intron | 35.0% | |
| ! | AATGGTTTTCAACATGTGAG+AGG | + | chr2.4:3732559-3732578 | MS.gene85164:CDS | 35.0% |
| ! | ATATCATTTGGGTATTGCTC+AGG | + | chr2.4:3733289-3733308 | MS.gene85164:intron | 35.0% |
| ! | GATTGGATTTGGGATTTGAA+GGG | + | chr2.4:3733988-3734007 | MS.gene85164:intron | 35.0% |
| ! | TGATTGGATTTGGGATTTGA+AGG | + | chr2.4:3733987-3734006 | MS.gene85164:intron | 35.0% |
| !! | CTTTCATTTTGAGAGATAGG+TGG | + | chr2.4:3734730-3734749 | MS.gene85164:intron | 35.0% |
| !! | TGAGAGTCTTTGTTTGTTGT+TGG | - | chr2.4:3732509-3732528 | None:intergenic | 35.0% |
| !!! | AGCAGTTCTGTTTTTTTGGT+GGG | - | chr2.4:3734143-3734162 | None:intergenic | 35.0% |
| !!! | GTATATTTTTTCCTTGGGGT+TGG | + | chr2.4:3733107-3733126 | MS.gene85164:intron | 35.0% |
| AAATCACACTAGTTAGCAGG+AGG | - | chr2.4:3735508-3735527 | None:intergenic | 40.0% | |
| AAATTCATAACCAGAGCTCG+AGG | + | chr2.4:3733522-3733541 | MS.gene85164:intron | 40.0% | |
| AACAACAACAATGTTGCTGC+TGG | + | chr2.4:3734268-3734287 | MS.gene85164:CDS | 40.0% | |
| AACATGGATGGTGTTCCAAT+TGG | + | chr2.4:3734343-3734362 | MS.gene85164:CDS | 40.0% | |
| AAGGGAATAAGTGGGTGATT+AGG | - | chr2.4:3733432-3733451 | None:intergenic | 40.0% | |
| AATGAAGATGCTTACTGCCA+TGG | - | chr2.4:3735136-3735155 | None:intergenic | 40.0% | |
| ACTAGCTGTATGCTTCAGAT+TGG | + | chr2.4:3734796-3734815 | MS.gene85164:intron | 40.0% | |
| ACTGGATTATTGGATGGAAG+TGG | + | chr2.4:3735052-3735071 | MS.gene85164:CDS | 40.0% | |
| AGAAAGCTTGAACTAAGGCT+TGG | + | chr2.4:3732451-3732470 | MS.gene85164:CDS | 40.0% | |
| AGGGAATAAGTGGGTGATTA+GGG | - | chr2.4:3733431-3733450 | None:intergenic | 40.0% | |
| ATGAAGATGCTTACTGCCAT+GGG | - | chr2.4:3735135-3735154 | None:intergenic | 40.0% | |
| ATGAGGATAATGAAGGAGAC+AGG | + | chr2.4:3735092-3735111 | MS.gene85164:CDS | 40.0% | |
| CAAAAAAACAGAACTGCTCC+TGG | + | chr2.4:3734145-3734164 | MS.gene85164:intron | 40.0% | |
| GAAACAGAACAGAACTTGCA+TGG | - | chr2.4:3732790-3732809 | None:intergenic | 40.0% | |
| GAATCAAACATGGCTAGGAA+AGG | - | chr2.4:3733029-3733048 | None:intergenic | 40.0% | |
| GAGGAAGAGAAAGTGATTAC+TGG | + | chr2.4:3735034-3735053 | MS.gene85164:CDS | 40.0% | |
| GGTCCCTCGTCATTAAAAAA+TGG | + | chr2.4:3733198-3733217 | MS.gene85164:intron | 40.0% | |
| GTACCCTACTAGTAAAAGCA+TGG | + | chr2.4:3734752-3734771 | MS.gene85164:intron | 40.0% | |
| GTTTCGATACGGCTAGTATT+TGG | + | chr2.4:3734556-3734575 | MS.gene85164:intron | 40.0% | |
| TCTCTGAATCAAACATGGCT+AGG | - | chr2.4:3733034-3733053 | None:intergenic | 40.0% | |
| TGGTGGTAACAAGAAAGAAG+AGG | + | chr2.4:3735015-3735034 | MS.gene85164:CDS | 40.0% | |
| TTCCTGAATGAACGAATTGG+TGG | - | chr2.4:3734187-3734206 | None:intergenic | 40.0% | |
| TTTCCAACACCTCTCAGAAA+AGG | + | chr2.4:3732665-3732684 | MS.gene85164:CDS | 40.0% | |
| ! | CTCTTTAGAGGACTCCTTAA+AGG | + | chr2.4:3734427-3734446 | MS.gene85164:CDS | 40.0% |
| ! | GGTATAGTACCTTTTCTGAG+AGG | - | chr2.4:3732677-3732696 | None:intergenic | 40.0% |
| ! | TTTTTAATGACGAGGGACCA+AGG | - | chr2.4:3733197-3733216 | None:intergenic | 40.0% |
| !! | TAGGGTTAGTTATGATCACG+AGG | - | chr2.4:3733413-3733432 | None:intergenic | 40.0% |
| !!! | CAGGAGCAGTTCTGTTTTTT+TGG | - | chr2.4:3734147-3734166 | None:intergenic | 40.0% |
| !!! | GAGCAGTTCTGTTTTTTTGG+TGG | - | chr2.4:3734144-3734163 | None:intergenic | 40.0% |
| !!! | GCAGTTCTGTTTTTTTGGTG+GGG | - | chr2.4:3734142-3734161 | None:intergenic | 40.0% |
| AACCAGTCTTCTTCAACACC+AGG | - | chr2.4:3732481-3732500 | None:intergenic | 45.0% | |
| AGTATGTCAAACCAACCCCA+AGG | - | chr2.4:3733121-3733140 | None:intergenic | 45.0% | |
| ATCTGTAGCACTACATGCCA+TGG | + | chr2.4:3735395-3735414 | MS.gene85164:intron | 45.0% | |
| CAAAATGCCACATCGAGTGA+TGG | - | chr2.4:3735258-3735277 | None:intergenic | 45.0% | |
| CTCTACTCTCTTAGGACAAC+AGG | - | chr2.4:3732611-3732630 | None:intergenic | 45.0% | |
| CTTGCATGGACCACAATAGT+AGG | - | chr2.4:3732776-3732795 | None:intergenic | 45.0% | |
| TCCAATTCCATCACTCGATG+TGG | + | chr2.4:3735248-3735267 | MS.gene85164:intron | 45.0% | |
| TGTGACAAACAGACATGCCA+TGG | - | chr2.4:3735415-3735434 | None:intergenic | 45.0% | |
| TTATTGCTAAGAGGGGACAG+TGG | - | chr2.4:3735452-3735471 | None:intergenic | 45.0% | |
| ! | GTCTGAGATTCTGGTTGTGA+TGG | - | chr2.4:3734238-3734257 | None:intergenic | 45.0% |
| ! | TGCTGTTGAGTCTGAGATTC+TGG | - | chr2.4:3734247-3734266 | None:intergenic | 45.0% |
| !! | CTGCTTTTACACGTGAGTCA+TGG | + | chr2.4:3735663-3735682 | MS.gene85164:CDS | 45.0% |
| !! | GTACCTTTTCTGAGAGGTGT+TGG | - | chr2.4:3732671-3732690 | None:intergenic | 45.0% |
| !! | TGTTAATATTATTTAATTAA+AGG | + | chr2.4:3735336-3735355 | MS.gene85164:intron | 5.0% |
| !!! | TTGTTTTTTAATAAATTTTT+TGG | + | chr2.4:3733240-3733259 | MS.gene85164:intron | 5.0% |
| CAACGAGATTCCTCTGCTTG+TGG | + | chr2.4:3734995-3735014 | MS.gene85164:CDS | 50.0% | |
| CAGTCTTCTTCAACACCAGG+TGG | - | chr2.4:3732478-3732497 | None:intergenic | 50.0% | |
| CTTGTTACCACCACAAGCAG+AGG | - | chr2.4:3735008-3735027 | None:intergenic | 50.0% | |
| GAAGGAGACAGGATGCTTGT+TGG | + | chr2.4:3735103-3735122 | MS.gene85164:CDS | 50.0% | |
| GCTGTGGATGAGCTCTTTAG+AGG | + | chr2.4:3734415-3734434 | MS.gene85164:CDS | 50.0% | |
| GGCCACCAATTCGTTCATTC+AGG | + | chr2.4:3734182-3734201 | MS.gene85164:CDS | 50.0% | |
| TAATTACCGTCCTCGAGCTC+TGG | - | chr2.4:3733535-3733554 | None:intergenic | 50.0% | |
| TCATAACCAGAGCTCGAGGA+CGG | + | chr2.4:3733526-3733545 | MS.gene85164:intron | 50.0% | |
| ! | CACCTGGTGTTGAAGAAGAC+TGG | + | chr2.4:3732476-3732495 | MS.gene85164:CDS | 50.0% |
| ! | GCCACATCGAGTGATGGAAT+TGG | - | chr2.4:3735252-3735271 | None:intergenic | 50.0% |
| !! | GGGTATTGCTCAGGAGTATC+CGG | + | chr2.4:3733298-3733317 | MS.gene85164:intron | 50.0% |
| !! | TGCTTGTTGGTGATGTCCCA+TGG | + | chr2.4:3735116-3735135 | MS.gene85164:CDS | 50.0% |
| AACTGCTCCTGGACCAGTAG+TGG | + | chr2.4:3734156-3734175 | MS.gene85164:CDS | 55.0% | |
| ACTGCTCCTGGACCAGTAGT+GGG | + | chr2.4:3734157-3734176 | MS.gene85164:CDS | 55.0% | |
| CGAGATTCCTCTGCTTGTGG+TGG | + | chr2.4:3734998-3735017 | MS.gene85164:CDS | 55.0% | |
| TACTCATGTGGACCGTCGTG+TGG | + | chr2.4:3734492-3734511 | MS.gene85164:intron | 55.0% | |
| ! | ATTGGTGGCCAACCCACTAC+TGG | - | chr2.4:3734172-3734191 | None:intergenic | 55.0% |
| ! | GAACTAAGGCTTGGTCCACC+TGG | + | chr2.4:3732460-3732479 | MS.gene85164:CDS | 55.0% |
| !! | CTCCTGGACCAGTAGTGGGT+TGG | + | chr2.4:3734161-3734180 | MS.gene85164:CDS | 60.0% |
| GGCCAACCCACTACTGGTCC+AGG | - | chr2.4:3734166-3734185 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 3732409 | 3735703 | 3732409 | ID=MS.gene85164 |
| chr2.4 | mRNA | 3732409 | 3735703 | 3732409 | ID=MS.gene85164.t1;Parent=MS.gene85164 |
| chr2.4 | exon | 3732409 | 3732686 | 3732409 | ID=MS.gene85164.t1.exon1;Parent=MS.gene85164.t1 |
| chr2.4 | CDS | 3732409 | 3732686 | 3732409 | ID=cds.MS.gene85164.t1;Parent=MS.gene85164.t1 |
| chr2.4 | exon | 3734156 | 3734448 | 3734156 | ID=MS.gene85164.t1.exon2;Parent=MS.gene85164.t1 |
| chr2.4 | CDS | 3734156 | 3734448 | 3734156 | ID=cds.MS.gene85164.t1;Parent=MS.gene85164.t1 |
| chr2.4 | exon | 3734993 | 3735140 | 3734993 | ID=MS.gene85164.t1.exon3;Parent=MS.gene85164.t1 |
| chr2.4 | CDS | 3734993 | 3735140 | 3734993 | ID=cds.MS.gene85164.t1;Parent=MS.gene85164.t1 |
| chr2.4 | exon | 3735610 | 3735703 | 3735610 | ID=MS.gene85164.t1.exon4;Parent=MS.gene85164.t1 |
| chr2.4 | CDS | 3735610 | 3735703 | 3735610 | ID=cds.MS.gene85164.t1;Parent=MS.gene85164.t1 |
| Gene Sequence |
| Protein sequence |
