AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86380.t1 MTR_2g103560 87.407 270 3 1 1 239 64 333 3.63e-167 464
MS.gene86380.t1 MTR_4g079190 67.901 243 49 5 1 238 64 282 2.49e-87 260
MS.gene86380.t1 MTR_1g048860 75.839 149 5 1 64 181 2 150 6.89e-50 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86380.t1 AT1G23280 66.412 131 43 1 1 131 64 193 3.45e-53 174

Find 49 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGATGACATGGAAGATTT+TGG 0.235599 2.3:-1451398 MS.gene86380:CDS
AATCCGCATCTGGGTCATTT+TGG 0.284801 2.3:+1453615 None:intergenic
GCAAATTGAGATGGAGATAG+TGG 0.342543 2.3:-1451694 MS.gene86380:CDS
TTCTGCATTAACAGATGTAT+TGG 0.350434 2.3:-1453675 MS.gene86380:intron
AATGATGCCGATCATGAAAA+TGG 0.350819 2.3:-1451347 MS.gene86380:intron
TCCTCATACGAATCCGCATC+TGG 0.358008 2.3:+1453605 None:intergenic
CTGGTTGCGAACCTACATTT+TGG 0.361173 2.3:+1451664 None:intergenic
TCTCTCTTTGTCTCTTTCCT+TGG 0.372921 2.3:+1452026 None:intergenic
ATCTTGTGTACGAGAAGCTT+TGG 0.393893 2.3:+1453652 None:intergenic
GCAGAAGTAGAATATGTAGA+AGG 0.404197 2.3:-1451437 MS.gene86380:CDS
GTACTATAAAGTTCTTGATA+TGG 0.407319 2.3:-1451613 MS.gene86380:CDS
ACTCTTTCCCACAAATCCTT+TGG 0.416287 2.3:+1453831 None:intergenic
CTCATACGCCAAAGGATTTG+TGG 0.458884 2.3:-1453839 MS.gene86380:CDS
TCTTCATCCTCTTCATCAGC+AGG 0.463201 2.3:+1451579 None:intergenic
TGCTTACGAAAGACAAAGAT+TGG 0.476293 2.3:-1449805 MS.gene86380:CDS
AGCTTCAAAGAAACTTGAAA+AGG 0.479994 2.3:-1450440 MS.gene86380:CDS
AGGAATTACGAACAGGCACT+TGG 0.500734 2.3:-1453798 MS.gene86380:CDS
CCCAGATGCGGATTCGTATG+AGG 0.505873 2.3:-1453606 MS.gene86380:CDS
TGGAGTCATCGACAAACATC+TGG 0.509833 2.3:-1453778 MS.gene86380:intron
GTTTGCAATTCATGAGTCAC+AGG 0.511321 2.3:-1451372 MS.gene86380:CDS
GGAAACTTGCTTTGAAAACA+AGG 0.511440 2.3:-1453585 MS.gene86380:intron
TTTCTTTGATTTAGTATCAA+GGG 0.513045 2.3:+1450414 None:intergenic
AGTGCCTGTTCGTAATTCCT+AGG 0.526835 2.3:+1453801 None:intergenic
TCATACGCCAAAGGATTTGT+GGG 0.528939 2.3:-1453838 MS.gene86380:CDS
GCTTCAACCTGCTGATGAAG+AGG 0.533182 2.3:-1451586 MS.gene86380:CDS
ACTTTATAGTACGCTTCAGT+AGG 0.533622 2.3:+1451624 None:intergenic
CAAAATGTAGGTTCGCAACC+AGG 0.546579 2.3:-1451663 MS.gene86380:CDS
GGGAAAGAGTTAAGCTGCCT+AGG 0.548712 2.3:-1453818 MS.gene86380:CDS
GCTGCCTAGGAATTACGAAC+AGG 0.552927 2.3:-1453805 MS.gene86380:CDS
CCTCATACGAATCCGCATCT+GGG 0.557645 2.3:+1453606 None:intergenic
TGCTGATGAAGAGGATGAAG+AGG 0.563447 2.3:-1451577 MS.gene86380:intron
AGAATCTAGAAGAGAAGCAA+AGG 0.564109 2.3:-1452006 MS.gene86380:CDS
GTAATCAGAGGAAAGCCAAA+AGG 0.573419 2.3:-1450474 MS.gene86380:CDS
AGAAGGTTATGAACTTGAAG+AGG 0.575452 2.3:-1451420 MS.gene86380:CDS
TATTACTTAGCAAATTGAGA+TGG 0.578126 2.3:-1451703 MS.gene86380:intron
GTGGGACGCCTCCAAAATGT+AGG 0.582304 2.3:-1451675 MS.gene86380:CDS
GAAAACGAAGGTCCTCATTG+AGG 0.590120 2.3:-1450395 MS.gene86380:intron
ACTTGAAGAGGAAGATGACA+TGG 0.603621 2.3:-1451408 MS.gene86380:CDS
CAAATTGAGATGGAGATAGT+GGG 0.613797 2.3:-1451693 MS.gene86380:CDS
GGATAGTTGAATATTTCACC+TGG 0.619836 2.3:+1451645 None:intergenic
AACAAATAATAACACTACCA+AGG 0.623666 2.3:-1452043 MS.gene86380:CDS
AAACTGAAGCACGTAATCAG+AGG 0.629054 2.3:-1450486 MS.gene86380:CDS
TGAAAGAGCTCATACGCCAA+AGG 0.633610 2.3:-1453847 MS.gene86380:CDS
AGAAGCAAAGGCTCAAACAG+CGG 0.638277 2.3:-1451994 MS.gene86380:CDS
AGTATTAAATTACCTCAATG+AGG 0.639733 2.3:+1450383 None:intergenic
AACAGCGGCTGCTATAGAGA+AGG 0.646322 2.3:-1451979 MS.gene86380:intron
TGACCAAAATGACCCAGATG+CGG 0.657520 2.3:-1453618 MS.gene86380:CDS
TTTGCAATTCATGAGTCACA+GGG 0.672082 2.3:-1451371 MS.gene86380:CDS
TACTAAATCAAAGAAAACGA+AGG 0.700083 2.3:-1450407 MS.gene86380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGGAAATAAAAATATAAAAA+AGG + chr2.3:1450234-1450253 None:intergenic 10.0%
!! ATGAAATTTAATTAAAATAC+TGG + chr2.3:1451314-1451333 None:intergenic 10.0%
!! TGAAATTTAATTAAAATACT+GGG + chr2.3:1451313-1451332 None:intergenic 10.0%
!!! ACAAATGTTATTTAAAATAT+TGG + chr2.3:1450663-1450682 None:intergenic 10.0%
!!! ATTTATTTAAAATCAGTAAT+AGG + chr2.3:1453477-1453496 None:intergenic 10.0%
!!! CAAATGTTATTTAAAATATT+GGG + chr2.3:1450662-1450681 None:intergenic 10.0%
!!! CTATATGAAAATATTTTATA+CGG - chr2.3:1450302-1450321 MS.gene86380:intron 10.0%
!!! TATATGAAAATATTTTATAC+GGG - chr2.3:1450303-1450322 MS.gene86380:intron 10.0%
!! AAAAAAAATCAATCAGATAT+AGG + chr2.3:1450818-1450837 None:intergenic 15.0%
!! AAATCATATACAGATATATT+TGG + chr2.3:1451441-1451460 None:intergenic 15.0%
!! AACATATAATTTAATATGCA+TGG + chr2.3:1451723-1451742 None:intergenic 15.0%
!! AATCATATACAGATATATTT+GGG + chr2.3:1451440-1451459 None:intergenic 15.0%
!! GAAAGAAAAAAAAAAAGAAA+AGG + chr2.3:1451198-1451217 None:intergenic 15.0%
!! GTACATTTATAATAGTATTA+GGG + chr2.3:1451466-1451485 None:intergenic 15.0%
!! TGTACATTTATAATAGTATT+AGG + chr2.3:1451467-1451486 None:intergenic 15.0%
!! TTATGATATCAATAATTGTA+GGG + chr2.3:1452456-1452475 None:intergenic 15.0%
!! TTTAAATTATTAGTGAAAAC+AGG + chr2.3:1450254-1450273 None:intergenic 15.0%
!!! AATATTTTTTAAGAGTGTTT+GGG + chr2.3:1451075-1451094 None:intergenic 15.0%
!!! ATGAAAAAAGTTGTATATTT+TGG + chr2.3:1450720-1450739 None:intergenic 15.0%
!!! CGTATAAAATATTTTCATAT+AGG + chr2.3:1450304-1450323 None:intergenic 15.0%
!!! TAATATTTTTTAAGAGTGTT+TGG + chr2.3:1451076-1451095 None:intergenic 15.0%
!!! TATTTTCATATAGGAAAAAA+AGG + chr2.3:1450295-1450314 None:intergenic 15.0%
!!! TTGATTTTTGTTATCATTTT+TGG - chr2.3:1450469-1450488 MS.gene86380:CDS 15.0%
!!! TTTTAAATAACATTTGTACT+AGG - chr2.3:1450666-1450685 MS.gene86380:intron 15.0%
!! AAATTAAATAATATGCAGCT+TGG + chr2.3:1450170-1450189 None:intergenic 20.0%
!! AACATATAATTTAACATGTG+TGG + chr2.3:1451902-1451921 None:intergenic 20.0%
!! AAGCAATTCTAATGATAAAA+AGG - chr2.3:1452955-1452974 MS.gene86380:intron 20.0%
!! AATTCACCCTAAAATTAAAT+GGG + chr2.3:1451284-1451303 None:intergenic 20.0%
!! ACATATAATTTAACATGTGT+GGG + chr2.3:1451901-1451920 None:intergenic 20.0%
!! AGTCATGATATTAGTATATA+TGG - chr2.3:1450968-1450987 MS.gene86380:intron 20.0%
!! CAATAACAAGTATAAAAGAT+GGG + chr2.3:1450345-1450364 None:intergenic 20.0%
!! CTGATAAGTAATTTAAATGA+AGG - chr2.3:1450741-1450760 MS.gene86380:intron 20.0%
!! CTTATGATATCAATAATTGT+AGG + chr2.3:1452457-1452476 None:intergenic 20.0%
!! GATAAAGAAAAGTTTGTAAA+AGG - chr2.3:1452516-1452535 MS.gene86380:intron 20.0%
!! GATTCCTAAATAAACAAATA+TGG + chr2.3:1450890-1450909 None:intergenic 20.0%
!! TAATTCACCCTAAAATTAAA+TGG + chr2.3:1451285-1451304 None:intergenic 20.0%
!! TATAATTACATCTAACAAGT+GGG + chr2.3:1450612-1450631 None:intergenic 20.0%
!! TCAATAACAAGTATAAAAGA+TGG + chr2.3:1450346-1450365 None:intergenic 20.0%
!! TGTACCATATTTGTTTATTT+AGG - chr2.3:1450883-1450902 MS.gene86380:intron 20.0%
!! TTATTGAACATGAAAAAAGT+GGG - chr2.3:1450359-1450378 MS.gene86380:intron 20.0%
!! TTTAATTCAAATACTTGACA+AGG + chr2.3:1451142-1451161 None:intergenic 20.0%
!!! AACATTTTTTCAATTCAGTT+TGG - chr2.3:1450572-1450591 MS.gene86380:intron 20.0%
!!! ACATTTTTTCAATTCAGTTT+GGG - chr2.3:1450573-1450592 MS.gene86380:intron 20.0%
!!! AGTTTTTTGTAGTTTATACA+AGG + chr2.3:1453302-1453321 None:intergenic 20.0%
!!! ATTATTTAATTTCTGCATGT+TGG - chr2.3:1450178-1450197 MS.gene86380:intron 20.0%
!!! TGTGAATGTTATGATTTTAT+TGG - chr2.3:1451333-1451352 MS.gene86380:intron 20.0%
!!! TTTCTTTGATTTAGTATCAA+GGG + chr2.3:1453244-1453263 None:intergenic 20.0%
!!! TTTTCTTTGATTTAGTATCA+AGG + chr2.3:1453245-1453264 None:intergenic 20.0%
!!! TTTTTCTTTTCAAATTGAAC+AGG - chr2.3:1452193-1452212 MS.gene86380:intron 20.0%
! AAAAGTAGACAAAAATATGC+AGG + chr2.3:1450863-1450882 None:intergenic 25.0%
! AAAATCAAGATTGTGATATC+AGG + chr2.3:1453804-1453823 None:intergenic 25.0%
! AAATAAATGATGCTACAAAC+TGG - chr2.3:1453489-1453508 MS.gene86380:intron 25.0%
! AAATGTTAAATCCCCTAAAA+TGG + chr2.3:1450559-1450578 None:intergenic 25.0%
! AACAAATAATAACACTACCA+AGG - chr2.3:1451612-1451631 MS.gene86380:CDS 25.0%
! AATACATCAAGCAAAAGAAA+GGG + chr2.3:1453640-1453659 None:intergenic 25.0%
! AATATTCAAAAGCAACAATG+AGG + chr2.3:1451757-1451776 None:intergenic 25.0%
! AATCAATCAGATATAGGAAA+AGG + chr2.3:1450812-1450831 None:intergenic 25.0%
! AATTTCGTTACTTGTAATAG+TGG - chr2.3:1450923-1450942 MS.gene86380:intron 25.0%
! AGTATTAAATTACCTCAATG+AGG + chr2.3:1453275-1453294 None:intergenic 25.0%
! AGTGTTCTGTTATAATTTGA+AGG - chr2.3:1453449-1453468 MS.gene86380:intron 25.0%
! ATCAATCAGATATAGGAAAA+GGG + chr2.3:1450811-1450830 None:intergenic 25.0%
! ATTCACCCTAAAATTAAATG+GGG + chr2.3:1451283-1451302 None:intergenic 25.0%
! CATATTTATGATCTCACATT+GGG - chr2.3:1451231-1451250 MS.gene86380:intron 25.0%
! GAAAAAAAGGTAAAGCAATA+TGG + chr2.3:1450282-1450301 None:intergenic 25.0%
! GAAATTTACAATCTCACATT+CGG - chr2.3:1451404-1451423 MS.gene86380:CDS 25.0%
! GTACTATAAAGTTCTTGATA+TGG - chr2.3:1452042-1452061 MS.gene86380:CDS 25.0%
! GTATAATTACATCTAACAAG+TGG + chr2.3:1450613-1450632 None:intergenic 25.0%
! GTTATTGAACATGAAAAAAG+TGG - chr2.3:1450358-1450377 MS.gene86380:intron 25.0%
! TACTAAATCAAAGAAAACGA+AGG - chr2.3:1453248-1453267 MS.gene86380:intron 25.0%
! TATTACTTAGCAAATTGAGA+TGG - chr2.3:1451952-1451971 MS.gene86380:intron 25.0%
! TATTGAACATGAAAAAAGTG+GGG - chr2.3:1450360-1450379 MS.gene86380:intron 25.0%
! TGATAACAAAAATCAAACAG+CGG + chr2.3:1450465-1450484 None:intergenic 25.0%
! TTAATATGCATGGTAACATT+AGG + chr2.3:1451713-1451732 None:intergenic 25.0%
! TTTAATTAAAATACTGGGCA+AGG + chr2.3:1451308-1451327 None:intergenic 25.0%
!! AATGTTACCATTTTCATGAT+CGG + chr2.3:1452318-1452337 None:intergenic 25.0%
!! ACATAATATACGTTTTCCAA+TGG - chr2.3:1452481-1452500 MS.gene86380:intron 25.0%
!! GTGTTAAAACATCCATTTTA+GGG - chr2.3:1450544-1450563 MS.gene86380:intron 25.0%
!! TAATTCATTTTACTCTGTTG+TGG - chr2.3:1452112-1452131 MS.gene86380:intron 25.0%
!! TATGAGTGTTACGATTTTAT+AGG - chr2.3:1451165-1451184 MS.gene86380:intron 25.0%
!! TCTTGATTTTCATTGTTTTC+AGG - chr2.3:1453814-1453833 MS.gene86380:CDS 25.0%
!! TGTAAAAGGTCTTATACTTA+GGG - chr2.3:1452530-1452549 MS.gene86380:intron 25.0%
!! TGTTAAAACATCCATTTTAG+GGG - chr2.3:1450545-1450564 MS.gene86380:intron 25.0%
!! TTGTAAAAGGTCTTATACTT+AGG - chr2.3:1452529-1452548 MS.gene86380:intron 25.0%
!!! ACTCATGATTTTTGTTTGAA+TGG + chr2.3:1452371-1452390 None:intergenic 25.0%
!!! CTGTTCTTTTAATTGCTATT+GGG - chr2.3:1453324-1453343 MS.gene86380:intron 25.0%
!!! GTTGCTTTTGAATATTACTT+AGG - chr2.3:1451761-1451780 MS.gene86380:intron 25.0%
!!! TAAAATGGATGTTTTAACAC+CGG + chr2.3:1450544-1450563 None:intergenic 25.0%
!!! TCATGAGTATTGAGAAAAAT+AGG - chr2.3:1452383-1452402 MS.gene86380:intron 25.0%
!!! TCTGTTCTTTTAATTGCTAT+TGG - chr2.3:1453323-1453342 MS.gene86380:intron 25.0%
!!! TTTCACCCCATTTAATTTTA+GGG - chr2.3:1451275-1451294 MS.gene86380:intron 25.0%
!!! TTTTCACCCCATTTAATTTT+AGG - chr2.3:1451274-1451293 MS.gene86380:intron 25.0%
AAAAGAAAGGGAAGTCATAA+GGG + chr2.3:1453628-1453647 None:intergenic 30.0%
AAGGTCTGGTAATATACATT+TGG + chr2.3:1453000-1453019 None:intergenic 30.0%
AAGTTCTTAGAGACTTAACT+TGG - chr2.3:1452150-1452169 MS.gene86380:intron 30.0%
ACAACTCAACCATTTCTTTA+GGG - chr2.3:1453387-1453406 MS.gene86380:intron 30.0%
ACACTGACAACTGTATATAT+AGG + chr2.3:1453434-1453453 None:intergenic 30.0%
ACCTAAAAGATAGTAGATCA+AGG + chr2.3:1451512-1451531 None:intergenic 30.0%
AGCTTCAAAGAAACTTGAAA+AGG - chr2.3:1453215-1453234 MS.gene86380:intron 30.0%
AGGTCTGGTAATATACATTT+GGG + chr2.3:1452999-1453018 None:intergenic 30.0%
AGTATGTGTAACTGTGAAAT+AGG - chr2.3:1452610-1452629 MS.gene86380:intron 30.0%
ATACATCTGTTAATGCAGAA+AGG + chr2.3:1449980-1449999 None:intergenic 30.0%
ATACTACAAACAGATCCTTT+AGG + chr2.3:1451006-1451025 None:intergenic 30.0%
CAATACATCAAGCAAAAGAA+AGG + chr2.3:1453641-1453660 None:intergenic 30.0%
CCAATGTGAGATCATAAATA+TGG + chr2.3:1451233-1451252 None:intergenic 30.0%
CCATATTTATGATCTCACAT+TGG - chr2.3:1451230-1451249 MS.gene86380:intron 30.0%
CTACAATCAATTACTCATGA+GGG + chr2.3:1450411-1450430 None:intergenic 30.0%
GATGTTGAAAATATGACAAC+TGG + chr2.3:1452839-1452858 None:intergenic 30.0%
GCATAATCTGTTACAACTTT+CGG + chr2.3:1453702-1453721 None:intergenic 30.0%
GGTATTATCATCCTTAAATC+CGG - chr2.3:1450522-1450541 MS.gene86380:intron 30.0%
GTAGTATATTGAATCATCCT+GGG - chr2.3:1451019-1451038 MS.gene86380:intron 30.0%
GTTCAGAATACTTTGTATCT+TGG + chr2.3:1452699-1452718 None:intergenic 30.0%
TAAATGGGGTGAAAATGATT+TGG + chr2.3:1451269-1451288 None:intergenic 30.0%
TAACATTTGTACTAGGCATT+TGG - chr2.3:1450673-1450692 MS.gene86380:intron 30.0%
TAAGAAATGCCTAAAACCTT+AGG - chr2.3:1453771-1453790 MS.gene86380:intron 30.0%
TATTCTGAACAAGATACACA+TGG - chr2.3:1452709-1452728 MS.gene86380:intron 30.0%
TCTTCACTCATCAAGTAATT+TGG - chr2.3:1452657-1452676 MS.gene86380:intron 30.0%
TGGAATAATAAGACTCCTAA+AGG - chr2.3:1450988-1451007 MS.gene86380:intron 30.0%
TGTAGTATATTGAATCATCC+TGG - chr2.3:1451018-1451037 MS.gene86380:intron 30.0%
TTCTGCATTAACAGATGTAT+TGG - chr2.3:1449980-1449999 MS.gene86380:intron 30.0%
TTGGGTGAATATTAAAAGTG+AGG + chr2.3:1450644-1450663 None:intergenic 30.0%
! AACACAAAAAGATGTTTTGC+TGG - chr2.3:1450501-1450520 MS.gene86380:CDS 30.0%
! CTTGATGTATTGCATAGTTT+TGG - chr2.3:1453649-1453668 MS.gene86380:CDS 30.0%
! GAAGGATTTGCTTAATCAAA+GGG - chr2.3:1450759-1450778 MS.gene86380:intron 30.0%
! GGTGTTAAAACATCCATTTT+AGG - chr2.3:1450543-1450562 MS.gene86380:intron 30.0%
! TCCTTGATCTACTATCTTTT+AGG - chr2.3:1451508-1451527 MS.gene86380:intron 30.0%
! TGAAGGATTTGCTTAATCAA+AGG - chr2.3:1450758-1450777 MS.gene86380:intron 30.0%
! TTTCCAATGGTACTCTAAAA+GGG - chr2.3:1452494-1452513 MS.gene86380:intron 30.0%
! TTTTCCAATGGTACTCTAAA+AGG - chr2.3:1452493-1452512 MS.gene86380:intron 30.0%
!! ACACTTTGCTGTAATTTTGT+GGG - chr2.3:1453725-1453744 MS.gene86380:intron 30.0%
!! AGCTAAAGTCATTTTCCTTT+TGG + chr2.3:1453199-1453218 None:intergenic 30.0%
!! CATGATTTTTGTTTGAATGG+AGG + chr2.3:1452368-1452387 None:intergenic 30.0%
!! TGATTTTCATTGTTTTCAGG+TGG - chr2.3:1453817-1453836 MS.gene86380:CDS 30.0%
!!! ATGTTGGTTTGTTGTTTTAC+AGG - chr2.3:1451588-1451607 MS.gene86380:CDS 30.0%
!!! ATGTTTTAACACCGGATTTA+AGG + chr2.3:1450536-1450555 None:intergenic 30.0%
!!! TGTTGGTTTGTTGTTTTACA+GGG - chr2.3:1451589-1451608 MS.gene86380:CDS 30.0%
AAGCTTCTTGCAGAATGATA+AGG + chr2.3:1450133-1450152 None:intergenic 35.0%
AATGATGCCGATCATGAAAA+TGG - chr2.3:1452308-1452327 MS.gene86380:intron 35.0%
ACAAACCAACATGATCAAAC+AGG + chr2.3:1451580-1451599 None:intergenic 35.0%
ACAAGATACACATGGTATGA+TGG - chr2.3:1452717-1452736 MS.gene86380:intron 35.0%
ACTGTTGAGATAGATGATGT+TGG - chr2.3:1453528-1453547 MS.gene86380:intron 35.0%
ACTTTATAGTACGCTTCAGT+AGG + chr2.3:1452034-1452053 None:intergenic 35.0%
AGAAGGTTATGAACTTGAAG+AGG - chr2.3:1452235-1452254 MS.gene86380:intron 35.0%
AGAATAGAAAGATCTGACTG+CGG + chr2.3:1452871-1452890 None:intergenic 35.0%
AGAATCTAGAAGAGAAGCAA+AGG - chr2.3:1451649-1451668 MS.gene86380:CDS 35.0%
CAAAAGAAAGGGAAGTCATA+AGG + chr2.3:1453629-1453648 None:intergenic 35.0%
CAAAATTACAGCAAAGTGTG+TGG + chr2.3:1453724-1453743 None:intergenic 35.0%
CAAATTGAGATGGAGATAGT+GGG - chr2.3:1451962-1451981 MS.gene86380:intron 35.0%
CCTACAATCAATTACTCATG+AGG + chr2.3:1450412-1450431 None:intergenic 35.0%
CCTCATGAGTAATTGATTGT+AGG - chr2.3:1450409-1450428 MS.gene86380:CDS 35.0%
GACAACTCAACCATTTCTTT+AGG - chr2.3:1453386-1453405 MS.gene86380:intron 35.0%
GAGGTTCTTATAATAAGCGA+CGG + chr2.3:1452349-1452368 None:intergenic 35.0%
GCAGAAGTAGAATATGTAGA+AGG - chr2.3:1452218-1452237 MS.gene86380:intron 35.0%
GGATAGTTGAATATTTCACC+TGG + chr2.3:1452013-1452032 None:intergenic 35.0%
GGTCTGGTAATATACATTTG+GGG + chr2.3:1452998-1453017 None:intergenic 35.0%
GTCTGGTAATATACATTTGG+GGG + chr2.3:1452997-1453016 None:intergenic 35.0%
GTTGAAAATATGACAACTGG+AGG + chr2.3:1452836-1452855 None:intergenic 35.0%
TAACATGTGTGGGTAACATT+AGG + chr2.3:1451891-1451910 None:intergenic 35.0%
TAGAAGCTTTGCAATATGCA+TGG - chr2.3:1452568-1452587 MS.gene86380:intron 35.0%
TAGATGGGGTGAAAATGATT+TGG + chr2.3:1451107-1451126 None:intergenic 35.0%
TCTGGTAATATACATTTGGG+GGG + chr2.3:1452996-1453015 None:intergenic 35.0%
TCTGTTAATGCAGAAAGGTA+AGG + chr2.3:1449975-1449994 None:intergenic 35.0%
TGCTTACGAAAGACAAAGAT+TGG - chr2.3:1453850-1453869 MS.gene86380:CDS 35.0%
TTCTTATAATAAGCGACGGA+GGG + chr2.3:1452345-1452364 None:intergenic 35.0%
TTGTGGTCAACATACAAAAC+TGG + chr2.3:1453598-1453617 None:intergenic 35.0%
TTTGCAATTCATGAGTCACA+GGG - chr2.3:1452284-1452303 MS.gene86380:intron 35.0%
! AAGGTAGTTCATCGATTAGA+TGG + chr2.3:1451123-1451142 None:intergenic 35.0%
! ACCATTTCTTTAGGGAACTT+TGG - chr2.3:1453395-1453414 MS.gene86380:intron 35.0%
! AGGTAGTTCATCGATTAGAT+GGG + chr2.3:1451122-1451141 None:intergenic 35.0%
! CCATTTCTTTAGGGAACTTT+GGG - chr2.3:1453396-1453415 MS.gene86380:intron 35.0%
! GAAGATGACATGGAAGATTT+TGG - chr2.3:1452257-1452276 MS.gene86380:intron 35.0%
!! AACTTGGTAATGTTGACTCT+GGG - chr2.3:1452166-1452185 MS.gene86380:intron 35.0%
!! CACACTTTGCTGTAATTTTG+TGG - chr2.3:1453724-1453743 MS.gene86380:intron 35.0%
!! GGAAACTTGCTTTGAAAACA+AGG - chr2.3:1450070-1450089 MS.gene86380:intron 35.0%
!! TAACTTGGTAATGTTGACTC+TGG - chr2.3:1452165-1452184 MS.gene86380:intron 35.0%
!!! TATCCCTTTTAGAGTACCAT+TGG + chr2.3:1452500-1452519 None:intergenic 35.0%
!!! TGCATAGTTTTGGTTTTGTC+TGG - chr2.3:1453659-1453678 MS.gene86380:CDS 35.0%
AAACTGAAGCACGTAATCAG+AGG - chr2.3:1453169-1453188 MS.gene86380:intron 40.0%
AAAGGGAAGTCATAAGGGAT+TGG + chr2.3:1453623-1453642 None:intergenic 40.0%
AATATACATTTGGGGGGTAG+AGG + chr2.3:1452990-1453009 None:intergenic 40.0%
ACATCTAACAAGTGGGAGAA+CGG + chr2.3:1450605-1450624 None:intergenic 40.0%
ACTACATCAGTACACTGCTT+TGG + chr2.3:1450951-1450970 None:intergenic 40.0%
ACTCTTTCCCACAAATCCTT+TGG + chr2.3:1449827-1449846 None:intergenic 40.0%
ACTTGAAGAGGAAGATGACA+TGG - chr2.3:1452247-1452266 MS.gene86380:intron 40.0%
AGACAAAAATATGCAGGAGC+AGG + chr2.3:1450857-1450876 None:intergenic 40.0%
AGTGGAGATTCAGACTGATA+AGG - chr2.3:1451854-1451873 MS.gene86380:intron 40.0%
ATATACATTTGGGGGGTAGA+GGG + chr2.3:1452989-1453008 None:intergenic 40.0%
ATCTTGTGTACGAGAAGCTT+TGG + chr2.3:1450006-1450025 None:intergenic 40.0%
CAATTACTCATGAGGGTTTG+AGG + chr2.3:1450404-1450423 None:intergenic 40.0%
CAGCATAAACTCCTTCTTCA+AGG + chr2.3:1451812-1451831 None:intergenic 40.0%
CCCAAAGTTCCCTAAAGAAA+TGG + chr2.3:1453399-1453418 None:intergenic 40.0%
CTAACTAAACGCCTTGAAGA+AGG - chr2.3:1451798-1451817 MS.gene86380:intron 40.0%
CTACATCAGTACACTGCTTT+GGG + chr2.3:1450950-1450969 None:intergenic 40.0%
GCAAATTGAGATGGAGATAG+TGG - chr2.3:1451961-1451980 MS.gene86380:intron 40.0%
GTAATCAGAGGAAAGCCAAA+AGG - chr2.3:1453181-1453200 MS.gene86380:intron 40.0%
GTCTTATACTTAGGGACAGA+GGG - chr2.3:1452538-1452557 MS.gene86380:intron 40.0%
GTTCTTATAATAAGCGACGG+AGG + chr2.3:1452346-1452365 None:intergenic 40.0%
GTTTGCAATTCATGAGTCAC+AGG - chr2.3:1452283-1452302 MS.gene86380:intron 40.0%
TCATACGCCAAAGGATTTGT+GGG - chr2.3:1449817-1449836 MS.gene86380:CDS 40.0%
TCTCTCTTTGTCTCTTTCCT+TGG + chr2.3:1451632-1451651 None:intergenic 40.0%
TGAACATGAAAAAAGTGGGG+TGG - chr2.3:1450363-1450382 MS.gene86380:intron 40.0%
TGACTTCTCTTTCATTGAGC+TGG - chr2.3:1452754-1452773 MS.gene86380:intron 40.0%
TGGTCAACATACAAAACTGG+AGG + chr2.3:1453595-1453614 None:intergenic 40.0%
TTCTCTTTCATTGAGCTGGT+GGG - chr2.3:1452758-1452777 MS.gene86380:intron 40.0%
TTGACATCTACTAATGCAGC+TGG - chr2.3:1453129-1453148 MS.gene86380:intron 40.0%
TTGGGAGTTGAGATAGAAAG+AGG + chr2.3:1451057-1451076 None:intergenic 40.0%
! ATGGGGTGAAAATGATTTGG+TGG + chr2.3:1451104-1451123 None:intergenic 40.0%
! GGTAGTTCATCGATTAGATG+GGG + chr2.3:1451121-1451140 None:intergenic 40.0%
!!! GATCAAACAGGCTGCTTTTA+TGG + chr2.3:1451568-1451587 None:intergenic 40.0%
AGAAGCAAAGGCTCAAACAG+CGG - chr2.3:1451661-1451680 MS.gene86380:CDS 45.0%
AGCAGCCTGTTTGATCATGT+TGG - chr2.3:1451572-1451591 MS.gene86380:intron 45.0%
AGGAATTACGAACAGGCACT+TGG - chr2.3:1449857-1449876 MS.gene86380:intron 45.0%
AGTGCCTGTTCGTAATTCCT+AGG + chr2.3:1449857-1449876 None:intergenic 45.0%
CAAAATGTAGGTTCGCAACC+AGG - chr2.3:1451992-1452011 MS.gene86380:CDS 45.0%
CTCATACGCCAAAGGATTTG+TGG - chr2.3:1449816-1449835 MS.gene86380:CDS 45.0%
CTTCTCTTTCATTGAGCTGG+TGG - chr2.3:1452757-1452776 MS.gene86380:intron 45.0%
GAAAACGAAGGTCCTCATTG+AGG - chr2.3:1453260-1453279 MS.gene86380:intron 45.0%
TATACATTTGGGGGGTAGAG+GGG + chr2.3:1452988-1453007 None:intergenic 45.0%
TCTTCATCCTCTTCATCAGC+AGG + chr2.3:1452079-1452098 None:intergenic 45.0%
TGAAAGAGCTCATACGCCAA+AGG - chr2.3:1449808-1449827 MS.gene86380:CDS 45.0%
TGACCAAAATGACCCAGATG+CGG - chr2.3:1450037-1450056 MS.gene86380:intron 45.0%
TGCAGAAAGCAGCACTCTAA+AGG + chr2.3:1453019-1453038 None:intergenic 45.0%
TGCTGATGAAGAGGATGAAG+AGG - chr2.3:1452078-1452097 MS.gene86380:intron 45.0%
TGGAGTCATCGACAAACATC+TGG - chr2.3:1449877-1449896 MS.gene86380:intron 45.0%
! AAAGCAGCACTCTAAAGGTC+TGG + chr2.3:1453014-1453033 None:intergenic 45.0%
! AAGAGAAGTGCGTACTGAAG+TGG - chr2.3:1451836-1451855 MS.gene86380:intron 45.0%
! AATCCGCATCTGGGTCATTT+TGG + chr2.3:1450043-1450062 None:intergenic 45.0%
! ACTCATGAGGGTTTGAGGTT+AGG + chr2.3:1450399-1450418 None:intergenic 45.0%
! AGAGGCATGCTTAAAAACCC+AGG + chr2.3:1451039-1451058 None:intergenic 45.0%
! CTGGTTGCGAACCTACATTT+TGG + chr2.3:1451994-1452013 None:intergenic 45.0%
! GGTCTTATACTTAGGGACAG+AGG - chr2.3:1452537-1452556 MS.gene86380:intron 45.0%
! GTTGCGAACCTACATTTTGG+AGG + chr2.3:1451991-1452010 None:intergenic 45.0%
!! GTCATAAGGGATTGGCTTTG+TGG + chr2.3:1453615-1453634 None:intergenic 45.0%
!! TTAGAGTGCTGCTTTCTGCA+TGG - chr2.3:1453019-1453038 MS.gene86380:intron 45.0%
AACAGCGGCTGCTATAGAGA+AGG - chr2.3:1451676-1451695 MS.gene86380:CDS 50.0%
CCTCATACGAATCCGCATCT+GGG + chr2.3:1450052-1450071 None:intergenic 50.0%
CTGCTTTCTGCATGGCTAAC+GGG - chr2.3:1453027-1453046 MS.gene86380:intron 50.0%
GCTGCCTAGGAATTACGAAC+AGG - chr2.3:1449850-1449869 MS.gene86380:intron 50.0%
GCTTCAACCTGCTGATGAAG+AGG - chr2.3:1452069-1452088 MS.gene86380:intron 50.0%
GGGAAAGAGTTAAGCTGCCT+AGG - chr2.3:1449837-1449856 MS.gene86380:intron 50.0%
TCCTCATACGAATCCGCATC+TGG + chr2.3:1450053-1450072 None:intergenic 50.0%
TGCAGGAGCAGGATAGACTA+TGG + chr2.3:1450846-1450865 None:intergenic 50.0%
! GCTGCTTTCTGCATGGCTAA+CGG - chr2.3:1453026-1453045 MS.gene86380:intron 50.0%
CCCAGATGCGGATTCGTATG+AGG - chr2.3:1450049-1450068 MS.gene86380:intron 55.0%
GTGGGACGCCTCCAAAATGT+AGG - chr2.3:1451980-1451999 MS.gene86380:CDS 55.0%
! TCTGCATGGCTAACGGGCAA+TGG - chr2.3:1453033-1453052 MS.gene86380:intron 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 1449797 1453880 1449797 ID=MS.gene86380
chr2.3 mRNA 1449797 1453880 1449797 ID=MS.gene86380.t1;Parent=MS.gene86380
chr2.3 exon 1453779 1453880 1453779 ID=MS.gene86380.t1.exon1;Parent=MS.gene86380.t1
chr2.3 CDS 1453779 1453880 1453779 ID=cds.MS.gene86380.t1;Parent=MS.gene86380.t1
chr2.3 exon 1453586 1453683 1453586 ID=MS.gene86380.t1.exon2;Parent=MS.gene86380.t1
chr2.3 CDS 1453586 1453683 1453586 ID=cds.MS.gene86380.t1;Parent=MS.gene86380.t1
chr2.3 exon 1451980 1452067 1451980 ID=MS.gene86380.t1.exon3;Parent=MS.gene86380.t1
chr2.3 CDS 1451980 1452067 1451980 ID=cds.MS.gene86380.t1;Parent=MS.gene86380.t1
chr2.3 exon 1451578 1451715 1451578 ID=MS.gene86380.t1.exon4;Parent=MS.gene86380.t1
chr2.3 CDS 1451578 1451715 1451578 ID=cds.MS.gene86380.t1;Parent=MS.gene86380.t1
chr2.3 exon 1451348 1451462 1451348 ID=MS.gene86380.t1.exon5;Parent=MS.gene86380.t1
chr2.3 CDS 1451348 1451462 1451348 ID=cds.MS.gene86380.t1;Parent=MS.gene86380.t1
chr2.3 exon 1450396 1450529 1450396 ID=MS.gene86380.t1.exon6;Parent=MS.gene86380.t1
chr2.3 CDS 1450396 1450529 1450396 ID=cds.MS.gene86380.t1;Parent=MS.gene86380.t1
chr2.3 exon 1449797 1449841 1449797 ID=MS.gene86380.t1.exon7;Parent=MS.gene86380.t1
chr2.3 CDS 1449797 1449841 1449797 ID=cds.MS.gene86380.t1;Parent=MS.gene86380.t1
Gene Sequence

>MS.gene86380

ATGAAGACTATTGAAAGAGCTCATACGCCAAAGGATTTGTGGGAAAGAGTTAAGCTGCCTAGGAATTACGAACAGGCACTTGGAGTCATCGACAAACATCTGGTACTGCATATTTATGTAGTCTTTGCAACATTTAAATGTTTGACATTTTACTTGAAAGTAATTGTCGAGATTGCCTTACCTTTCTGCATTAACAGATGTATTGGCCAAAGCTTCTCGTACACAAGATAAAACAACGATTGACCAAAATGACCCAGATGCGGATTCGTATGAGGAAACTTGCTTTGAAAACAAGGTTTGAACTGAATTCTATTTGCATCTTATTAAGCAGCGCCTTATCATTCTGCAAGAAGCTTGTGAAACTGATACTCCAAGCTGCATATTATTTAATTTCTGCATGTTGGTTCTGAACATTTGAAAAATCAATTAAAATACCTTTTTTATATTTTTATTTCCTGTTTTCACTAATAATTTAAAAAATGCCATATTGCTTTACCTTTTTTTCCTATATGAAAATATTTTATACGGGAAACAATTTTTGTAAACCCATCTTTTATACTTGTTATTGAACATGAAAAAAGTGGGGTGGACAGTAGATGCCTAACCTCAAACCCTCATGAGTAATTGATTGTAGGAAAAAAAAATTAAGTGCACGCATATTTAGACCGCTGTTTGATTTTTGTTATCATTTTTGGCAGCTAGACAACACAAAAAGATGTTTTGCTGGTATTATCATCCTTAAATCCGGTGTTAAAACATCCATTTTAGGGGATTTAACATTTTTTCAATTCAGTTTGGGAAGAATCCGTTCTCCCACTTGTTAGATGTAATTATACAATGTTTGCCTCACTTTTAATATTCACCCAATATTTTAAATAACATTTGTACTAGGCATTTGGCATTTGATGCTTAAATACTTTCCAAAATATACAACTTTTTTCATGCTGATAAGTAATTTAAATGAAGGATTTGCTTAATCAAAGGGAAAATTACATTAGAAAGATATTGCTTCCCTTTTCCTATATCTGATTGATTTTTTTTTTTTGCCATAGTCTATCCTGCTCCTGCATATTTTTGTCTACTTTTTGTACCATATTTGTTTATTTAGGAATCATTAGATATTTAGAATTTCGTTACTTGTAATAGTGGACCCAAAGCAGTGTACTGATGTAGTCATGATATTAGTATATATGGAATAATAAGACTCCTAAAGGATCTGTTTGTAGTATATTGAATCATCCTGGGTTTTTAAGCATGCCTCTTTCTATCTCAACTCCCAAACACTCTTAAAAAATATTATTATTCCACCAAATCATTTTCACCCCATCTAATCGATGAACTACCTTGTCAAGTATTTGAATTAAATTTTATGAGTGTTACGATTTTATAGGTATTTTTCCTTTTCTTTTTTTTTTTCTTTCTGATTTTATATACCATATTTATGATCTCACATTGGGTGTATTATTCCACCAAATCATTTTCACCCCATTTAATTTTAGGGTGAATTACCTTGCCCAGTATTTTAATTAAATTTCATGTGAATGTTATGATTTTATTGGTATTTGTTTTTTTTTTTTTTTTGAACTTTTGTATTTGATTTTGTATATGAAATTTACAATCTCACATTCGGTGTATTACAACCCAAATATATCTGTATATGATTTTTCCCTAATACTATTATAAATGTACATTTGTGTGAGAATTCTTCATCTCCTTGATCTACTATCTTTTAGGTTGTTGTCTTCAGTGAAAGTTCATAGCAGTTTCGCCATAAAAGCAGCCTGTTTGATCATGTTGGTTTGTTGTTTTACAGGGAACAAATAATAACACTACCAAGGAAAGAGACAAAGAGAGAATCTAGAAGAGAAGCAAAGGCTCAAACAGCGGCTGCTATAGAGAAGGTTATAGTTAATCCTAATGTTACCATGCATATTAAATTATATGTTGTATTCGCTTTCCTCATTGTTGCTTTTGAATATTACTTAGGCTATTGAGCATGAGCTAACTAAACGCCTTGAAGAAGGAGTTTATGCTGATAAAAGAGAAGTGCGTACTGAAGTGGAGATTCAGACTGATAAGGTTATAGTTAATCCTAATGTTACCCACACATGTTAAATTATATGTTATCTTCGCTGTCCTCATTGTTGCTTTTGAATATTACTTAGCAAATTGAGATGGAGATAGTGGGACGCCTCCAAAATGTAGGTTCGCAACCAGGTGAAATATTCAACTATCCTACTGAAGCGTACTATAAAGTTCTTGATATGGAGAAGCTTCAACCTGCTGATGAAGAGGATGAAGAGGTACATATTTTATAATTCATTTTACTCTGTTGTGGATTGTGTTGAAAACAAAGTTCTTAGAGACTTAACTTGGTAATGTTGACTCTGGGTCTTTTTTTCTTTTCAAATTGAACAGGAAGCAGAAGTAGAATATGTAGAAGGTTATGAACTTGAAGAGGAAGATGACATGGAAGATTTTGGTGCGTTTGCAATTCATGAGTCACAGGGCAATGATGCCGATCATGAAAATGGTAACATTTACTCCCTCCGTCGCTTATTATAAGAACCTCCATTCAAACAAAAATCATGAGTATTGAGAAAAATAGGTGCAGTAATTAATCTGTCAAAAAGCTGTGTTAGTTTTACATATTTATCCCTACAATTATTGATATCATAAGAGAAACATAATATACGTTTTCCAATGGTACTCTAAAAGGGATAAAGAAAAGTTTGTAAAAGGTCTTATACTTAGGGACAGAGGGAGTAGTTTAGAAGCTTTGCAATATGCATGGAGTATTTTTTTCAAGCTAAAGTATGTGTAACTGTGAAATAGGTATGAAAATGCTTTGCGAAATATTTCTTCACTCATCAAGTAATTTGGTTTTGCATAATTGAAGCCAAGATACAAAGTATTCTGAACAAGATACACATGGTATGATGGTTAAGAGTGTTTTGTGACTTCTCTTTCATTGAGCTGGTGGGTAAACATAGTAATGAGTGATATTATCATAGTTTATTTTGCTGCATAATTTATCCTCCAGTTGTCATATTTTCAACATCTTCTAGATACCGCAGTCAGATCTTTCTATTCTTTGTACTTAAAATCTTAGCTTTAATAGCACATTGCTTTTTGTAGTTTCAAGTTATTATTCGTACAAGCAATTCTAATGATAAAAAGGTTATAATCCCCTCTACCCCCCAAATGTATATTACCAGACCTTTAGAGTGCTGCTTTCTGCATGGCTAACGGGCAATGGCTAATAATTCAAATGCTCAGTCTACTAATGCTGATGTCTAAAAATTTGAAACACTTTAAAAAGCAATAATTTCTTGACATCTACTAATGCAGCTGGAAGCAGTGAAGACGAAGAAACTGAAGCACGTAATCAGAGGAAAGCCAAAAGGAAAATGACTTTAGCTTCAAAGAAACTTGAAAAGGATGCCCTTGATACTAAATCAAAGAAAACGAAGGTCCTCATTGAGGTAATTTAATACTGTTTCCTTGTATAAACTACAAAAAACTATCTGTTCTTTTAATTGCTATTGGGTATTTTGTCTTGCACTGCTATGAATCAGTTTCTGTGTACGACAACTCAACCATTTCTTTAGGGAACTTTGGGTGTATCAGAATTCCTATATATACAGTTGTCAGTGTTCTGTTATAATTTGAAGGCTCCTATTACTGATTTTAAATAAATGATGCTACAAACTGGAATCGCATTGCTCTGAACTGTTGAGATAGATGATGTTGGTAAAGTGCAGATTTTGTTTGAGTTTGAAAATAGAGCTGATGCCTCCAGTTTTGTATGTTGACCACAAAGCCAATCCCTTATGACTTCCCTTTCTTTTGCTTGATGTATTGCATAGTTTTGGTTTTGTCTGGTTTAGCAAAATTACATTCCGAAAGTTGTAACAGATTATGCCACACACTTTGCTGTAATTTTGTGGGCAGTGTTCTCTTGTTTGAAAAAATAAGAAATGCCTAAAACCTTAGGTTCCAAACCTGATATCACAATCTTGATTTTCATTGTTTTCAGGTGGAACACGACGATGCTTACGAAAGACAAAGATTGGTACAGTAG

Protein sequence

>MS.gene86380.t1

MKTIERAHTPKDLWERVKLPRNYEQALGVIDKHLMYWPKLLVHKIKQRLTKMTQMRIRMRKLALKTREQIITLPRKETKRESRREAKAQTAAAIEKQIEMEIVGRLQNVGSQPGEIFNYPTEAYYKVLDMEKLQPADEEDEEEAEVEYVEGYELEEEDDMEDFGAFAIHESQGNDADHENAGSSEDEETEARNQRKAKRKMTLASKKLEKDALDTKSKKTKVLIEVEHDDAYERQRLVQ