Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87850.t1 | XP_024629064.1 | 97.5 | 673 | 17 | 0 | 1 | 673 | 1 | 673 | 0.00E+00 | 1335.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87850.t1 | Q9LE59 | 70.7 | 669 | 191 | 3 | 6 | 673 | 9 | 673 | 2.9e-282 | 972.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87850.t1 | A0A1S2YW74 | 89.2 | 667 | 72 | 0 | 5 | 671 | 3 | 669 | 0.0e+00 | 1220.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene87850 | 0.845649 | 3.56E-59 | -1.69E-46 |
| MS.gene049681 | MS.gene87850 | 0.822239 | 2.64E-53 | -1.69E-46 |
| MS.gene049758 | MS.gene87850 | 0.837813 | 4.17E-57 | -1.69E-46 |
| MS.gene050301 | MS.gene87850 | 0.847243 | 1.31E-59 | -1.69E-46 |
| MS.gene050397 | MS.gene87850 | 0.808808 | 2.58E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene87850 | 0.803591 | 3.24E-49 | -1.69E-46 |
| MS.gene05101 | MS.gene87850 | 0.813515 | 2.46E-51 | -1.69E-46 |
| MS.gene051255 | MS.gene87850 | 0.838946 | 2.13E-57 | -1.69E-46 |
| MS.gene051360 | MS.gene87850 | 0.832084 | 1.16E-55 | -1.69E-46 |
| MS.gene051860 | MS.gene87850 | 0.835863 | 1.31E-56 | -1.69E-46 |
| MS.gene051877 | MS.gene87850 | 0.836193 | 1.08E-56 | -1.69E-46 |
| MS.gene052207 | MS.gene87850 | 0.845336 | 4.33E-59 | -1.69E-46 |
| MS.gene052287 | MS.gene87850 | 0.849807 | 2.55E-60 | -1.69E-46 |
| MS.gene052326 | MS.gene87850 | 0.817653 | 2.95E-52 | -1.69E-46 |
| MS.gene052485 | MS.gene87850 | 0.82027 | 7.50E-53 | -1.69E-46 |
| MS.gene053209 | MS.gene87850 | 0.80843 | 3.11E-50 | -1.69E-46 |
| MS.gene053813 | MS.gene87850 | 0.802863 | 4.59E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene87850 | 0.830952 | 2.20E-55 | -1.69E-46 |
| MS.gene054010 | MS.gene87850 | 0.855183 | 7.48E-62 | -1.69E-46 |
| MS.gene054011 | MS.gene87850 | 0.854315 | 1.34E-61 | -1.69E-46 |
| MS.gene054012 | MS.gene87850 | 0.862113 | 6.38E-64 | -1.69E-46 |
| MS.gene054013 | MS.gene87850 | 0.863843 | 1.86E-64 | -1.69E-46 |
| MS.gene054473 | MS.gene87850 | 0.832343 | 9.98E-56 | -1.69E-46 |
| MS.gene05455 | MS.gene87850 | 0.815469 | 9.10E-52 | -1.69E-46 |
| MS.gene055277 | MS.gene87850 | 0.86493 | 8.53E-65 | -1.69E-46 |
| MS.gene055390 | MS.gene87850 | 0.851306 | 9.67E-61 | -1.69E-46 |
| MS.gene055422 | MS.gene87850 | 0.819512 | 1.12E-52 | -1.69E-46 |
| MS.gene055428 | MS.gene87850 | 0.832671 | 8.28E-56 | -1.69E-46 |
| MS.gene055604 | MS.gene87850 | 0.855944 | 4.49E-62 | -1.69E-46 |
| MS.gene056191 | MS.gene87850 | 0.853038 | 3.11E-61 | -1.69E-46 |
| MS.gene056410 | MS.gene87850 | 0.859434 | 4.15E-63 | -1.69E-46 |
| MS.gene056452 | MS.gene87850 | 0.815341 | 9.72E-52 | -1.69E-46 |
| MS.gene056902 | MS.gene87850 | 0.855241 | 7.20E-62 | -1.69E-46 |
| MS.gene056931 | MS.gene87850 | 0.869085 | 4.03E-66 | -1.69E-46 |
| MS.gene056933 | MS.gene87850 | 0.873665 | 1.23E-67 | -1.69E-46 |
| MS.gene056935 | MS.gene87850 | 0.860899 | 1.50E-63 | -1.69E-46 |
| MS.gene05733 | MS.gene87850 | 0.81243 | 4.26E-51 | -1.69E-46 |
| MS.gene057450 | MS.gene87850 | 0.803573 | 3.27E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene87850 | 0.828866 | 7.08E-55 | -1.69E-46 |
| MS.gene058002 | MS.gene87850 | 0.813993 | 1.93E-51 | -1.69E-46 |
| MS.gene05806 | MS.gene87850 | 0.80859 | 2.87E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene87850 | 0.874741 | 5.33E-68 | -1.69E-46 |
| MS.gene05842 | MS.gene87850 | 0.81102 | 8.63E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene87850 | 0.827314 | 1.67E-54 | -1.69E-46 |
| MS.gene05907 | MS.gene87850 | 0.857456 | 1.61E-62 | -1.69E-46 |
| MS.gene059294 | MS.gene87850 | 0.823745 | 1.17E-53 | -1.69E-46 |
| MS.gene059518 | MS.gene87850 | 0.833057 | 6.64E-56 | -1.69E-46 |
| MS.gene059530 | MS.gene87850 | 0.813144 | 2.97E-51 | -1.69E-46 |
| MS.gene059597 | MS.gene87850 | 0.814333 | 1.63E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene87850 | 0.813384 | 2.63E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene87850 | 0.810425 | 1.16E-50 | -1.69E-46 |
| MS.gene059692 | MS.gene87850 | 0.8172 | 3.73E-52 | -1.69E-46 |
| MS.gene059695 | MS.gene87850 | 0.81609 | 6.62E-52 | -1.69E-46 |
| MS.gene059711 | MS.gene87850 | 0.804655 | 1.95E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene87850 | 0.82237 | 2.46E-53 | -1.69E-46 |
| MS.gene059974 | MS.gene87850 | 0.82639 | 2.78E-54 | -1.69E-46 |
| MS.gene060005 | MS.gene87850 | 0.824259 | 8.89E-54 | -1.69E-46 |
| MS.gene06037 | MS.gene87850 | 0.866442 | 2.84E-65 | -1.69E-46 |
| MS.gene060559 | MS.gene87850 | 0.871168 | 8.39E-67 | -1.69E-46 |
| MS.gene060569 | MS.gene87850 | 0.818725 | 1.69E-52 | -1.69E-46 |
| MS.gene060837 | MS.gene87850 | 0.811371 | 7.24E-51 | -1.69E-46 |
| MS.gene060986 | MS.gene87850 | 0.803699 | 3.08E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene87850 | 0.824395 | 8.26E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87850.t1 | MTR_8g033360 | 97.487 | 597 | 15 | 0 | 41 | 637 | 1 | 597 | 0.0 | 1207 |
| MS.gene87850.t1 | MTR_7g075840 | 80.577 | 659 | 123 | 4 | 16 | 673 | 10 | 664 | 0.0 | 1069 |
| MS.gene87850.t1 | MTR_3g107930 | 57.097 | 620 | 226 | 4 | 79 | 671 | 57 | 663 | 0.0 | 721 |
| MS.gene87850.t1 | MTR_3g107930 | 64.122 | 524 | 188 | 0 | 148 | 671 | 63 | 586 | 0.0 | 720 |
| MS.gene87850.t1 | MTR_2g027740 | 49.331 | 673 | 316 | 9 | 16 | 672 | 3 | 666 | 0.0 | 642 |
| MS.gene87850.t1 | MTR_8g092000 | 56.818 | 484 | 199 | 2 | 193 | 673 | 104 | 580 | 0.0 | 588 |
| MS.gene87850.t1 | MTR_2g015550 | 48.723 | 470 | 228 | 5 | 210 | 672 | 70 | 533 | 1.41e-165 | 486 |
| MS.gene87850.t1 | MTR_7g055600 | 56.691 | 411 | 172 | 4 | 264 | 671 | 25 | 432 | 2.32e-157 | 461 |
| MS.gene87850.t1 | MTR_7g057530 | 56.691 | 411 | 172 | 4 | 264 | 671 | 25 | 432 | 2.32e-157 | 461 |
| MS.gene87850.t1 | MTR_4g109890 | 47.414 | 464 | 228 | 4 | 216 | 671 | 79 | 534 | 2.50e-153 | 454 |
| MS.gene87850.t1 | MTR_2g461670 | 46.467 | 467 | 240 | 4 | 210 | 671 | 128 | 589 | 2.52e-151 | 451 |
| MS.gene87850.t1 | MTR_7g096160 | 45.591 | 465 | 223 | 3 | 211 | 672 | 216 | 653 | 5.26e-148 | 445 |
| MS.gene87850.t1 | MTR_6g016380 | 47.558 | 471 | 227 | 8 | 219 | 671 | 85 | 553 | 1.07e-145 | 435 |
| MS.gene87850.t1 | MTR_2g006790 | 43.949 | 471 | 225 | 7 | 210 | 672 | 70 | 509 | 3.20e-137 | 412 |
| MS.gene87850.t1 | MTR_1g070490 | 41.895 | 475 | 238 | 8 | 204 | 673 | 158 | 599 | 1.10e-123 | 381 |
| MS.gene87850.t1 | MTR_7g012370 | 44.010 | 409 | 202 | 8 | 274 | 660 | 121 | 524 | 1.54e-115 | 358 |
| MS.gene87850.t1 | MTR_2g082650 | 42.040 | 402 | 216 | 5 | 287 | 671 | 9 | 410 | 2.38e-113 | 347 |
| MS.gene87850.t1 | MTR_2g082650 | 40.865 | 416 | 229 | 5 | 273 | 671 | 124 | 539 | 3.87e-112 | 348 |
| MS.gene87850.t1 | MTR_6g013840 | 43.780 | 418 | 216 | 7 | 274 | 673 | 116 | 532 | 2.33e-109 | 341 |
| MS.gene87850.t1 | MTR_4g133570 | 39.753 | 405 | 227 | 4 | 284 | 671 | 58 | 462 | 2.18e-106 | 331 |
| MS.gene87850.t1 | MTR_3g452360 | 36.865 | 453 | 253 | 10 | 235 | 671 | 93 | 528 | 2.15e-92 | 296 |
| MS.gene87850.t1 | MTR_3g452360 | 38.701 | 385 | 212 | 7 | 304 | 671 | 2 | 379 | 3.34e-90 | 286 |
| MS.gene87850.t1 | MTR_7g012370 | 43.252 | 326 | 160 | 7 | 274 | 579 | 121 | 441 | 4.59e-83 | 270 |
| MS.gene87850.t1 | MTR_7g074680 | 32.371 | 485 | 296 | 7 | 197 | 672 | 103 | 564 | 5.65e-78 | 259 |
| MS.gene87850.t1 | MTR_7g074680 | 28.928 | 681 | 393 | 15 | 10 | 672 | 17 | 624 | 8.71e-78 | 261 |
| MS.gene87850.t1 | MTR_7g074680 | 28.882 | 689 | 403 | 15 | 10 | 672 | 17 | 644 | 1.61e-77 | 260 |
| MS.gene87850.t1 | MTR_7g074680 | 32.371 | 485 | 296 | 7 | 197 | 672 | 143 | 604 | 2.10e-77 | 259 |
| MS.gene87850.t1 | MTR_7g074680 | 28.635 | 674 | 404 | 14 | 10 | 672 | 17 | 624 | 2.75e-77 | 259 |
| MS.gene87850.t1 | MTR_7g074680 | 28.754 | 706 | 399 | 18 | 10 | 672 | 17 | 661 | 2.45e-74 | 252 |
| MS.gene87850.t1 | MTR_4g133942 | 56.716 | 201 | 57 | 3 | 475 | 672 | 160 | 333 | 1.63e-67 | 224 |
| MS.gene87850.t1 | MTR_6g008900 | 26.923 | 338 | 198 | 12 | 348 | 666 | 64 | 371 | 2.91e-24 | 105 |
| MS.gene87850.t1 | MTR_4g071620 | 26.923 | 338 | 198 | 12 | 348 | 666 | 64 | 371 | 2.91e-24 | 105 |
| MS.gene87850.t1 | MTR_7g094230 | 32.571 | 175 | 113 | 4 | 477 | 646 | 151 | 325 | 6.36e-22 | 98.2 |
| MS.gene87850.t1 | MTR_5g036580 | 27.928 | 333 | 190 | 14 | 344 | 661 | 62 | 359 | 1.06e-21 | 98.2 |
| MS.gene87850.t1 | MTR_8g033350 | 95.238 | 42 | 2 | 0 | 1 | 42 | 1 | 42 | 1.18e-21 | 94.0 |
| MS.gene87850.t1 | MTR_4g118030 | 27.799 | 259 | 156 | 8 | 419 | 646 | 62 | 320 | 3.66e-21 | 95.9 |
| MS.gene87850.t1 | MTR_3g092310 | 31.122 | 196 | 127 | 5 | 477 | 664 | 140 | 335 | 4.45e-21 | 95.5 |
| MS.gene87850.t1 | MTR_7g109210 | 27.358 | 318 | 181 | 11 | 358 | 663 | 74 | 353 | 6.25e-21 | 95.5 |
| MS.gene87850.t1 | MTR_3g111600 | 29.016 | 193 | 124 | 6 | 477 | 658 | 80 | 270 | 2.70e-19 | 89.0 |
| MS.gene87850.t1 | MTR_8g078240 | 28.230 | 209 | 133 | 6 | 445 | 643 | 115 | 316 | 3.48e-18 | 87.0 |
| MS.gene87850.t1 | MTR_1g021855 | 29.381 | 194 | 123 | 6 | 477 | 658 | 165 | 356 | 2.88e-17 | 84.3 |
| MS.gene87850.t1 | MTR_1g089820 | 32.571 | 175 | 113 | 4 | 477 | 646 | 154 | 328 | 2.27e-16 | 81.6 |
| MS.gene87850.t1 | MTR_5g019220 | 30.636 | 173 | 114 | 5 | 477 | 643 | 166 | 338 | 9.18e-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87850.t1 | AT3G61130 | 70.703 | 669 | 191 | 3 | 6 | 673 | 9 | 673 | 0.0 | 1000 |
| MS.gene87850.t1 | AT4G38270 | 55.049 | 614 | 251 | 5 | 80 | 673 | 68 | 676 | 0.0 | 714 |
| MS.gene87850.t1 | AT4G38270 | 54.693 | 618 | 251 | 5 | 80 | 673 | 68 | 680 | 0.0 | 709 |
| MS.gene87850.t1 | AT2G46480 | 59.434 | 530 | 210 | 3 | 145 | 673 | 15 | 540 | 0.0 | 661 |
| MS.gene87850.t1 | AT2G46480 | 59.434 | 530 | 210 | 3 | 145 | 673 | 28 | 553 | 0.0 | 661 |
| MS.gene87850.t1 | AT5G47780 | 62.256 | 461 | 170 | 1 | 212 | 672 | 159 | 615 | 0.0 | 634 |
| MS.gene87850.t1 | AT2G46480 | 56.038 | 530 | 203 | 4 | 145 | 673 | 15 | 515 | 0.0 | 607 |
| MS.gene87850.t1 | AT2G46480 | 56.038 | 530 | 203 | 4 | 145 | 673 | 28 | 528 | 0.0 | 606 |
| MS.gene87850.t1 | AT3G25140 | 55.924 | 422 | 177 | 5 | 256 | 671 | 139 | 557 | 3.64e-168 | 493 |
| MS.gene87850.t1 | AT1G18580 | 48.195 | 471 | 230 | 5 | 207 | 669 | 70 | 534 | 3.57e-160 | 472 |
| MS.gene87850.t1 | AT2G20810 | 48.077 | 468 | 230 | 6 | 213 | 672 | 74 | 536 | 1.45e-150 | 447 |
| MS.gene87850.t1 | AT3G02350 | 48.511 | 470 | 222 | 6 | 220 | 671 | 92 | 559 | 6.04e-148 | 441 |
| MS.gene87850.t1 | AT1G06780 | 43.871 | 465 | 233 | 2 | 211 | 672 | 149 | 588 | 8.11e-138 | 416 |
| MS.gene87850.t1 | AT1G06780 | 43.871 | 465 | 233 | 2 | 211 | 672 | 162 | 601 | 2.11e-137 | 416 |
| MS.gene87850.t1 | AT2G30575 | 34.930 | 647 | 359 | 7 | 31 | 673 | 22 | 610 | 6.42e-136 | 412 |
| MS.gene87850.t1 | AT3G01040 | 44.258 | 418 | 216 | 5 | 273 | 673 | 115 | 532 | 2.28e-116 | 359 |
| MS.gene87850.t1 | AT3G01040 | 44.258 | 418 | 216 | 5 | 273 | 673 | 115 | 532 | 2.28e-116 | 359 |
| MS.gene87850.t1 | AT5G15470 | 44.844 | 417 | 213 | 5 | 274 | 673 | 116 | 532 | 9.16e-116 | 357 |
| MS.gene87850.t1 | AT5G54690 | 39.252 | 428 | 236 | 6 | 268 | 671 | 105 | 532 | 1.89e-110 | 344 |
| MS.gene87850.t1 | AT3G01040 | 41.388 | 418 | 195 | 6 | 273 | 673 | 115 | 499 | 9.64e-101 | 317 |
| MS.gene87850.t1 | AT2G38650 | 34.576 | 483 | 283 | 9 | 197 | 672 | 162 | 618 | 8.13e-90 | 292 |
| MS.gene87850.t1 | AT2G38650 | 34.576 | 483 | 283 | 9 | 197 | 672 | 162 | 618 | 8.13e-90 | 292 |
| MS.gene87850.t1 | AT3G58790 | 37.685 | 406 | 225 | 8 | 288 | 671 | 7 | 406 | 4.39e-87 | 279 |
| MS.gene87850.t1 | AT3G58790 | 36.150 | 426 | 244 | 8 | 268 | 671 | 119 | 538 | 4.14e-86 | 280 |
| MS.gene87850.t1 | AT2G38650 | 35.219 | 389 | 220 | 8 | 197 | 579 | 162 | 524 | 3.66e-68 | 233 |
| MS.gene87850.t1 | AT1G02720 | 27.900 | 319 | 185 | 11 | 358 | 665 | 77 | 361 | 1.89e-22 | 100 |
| MS.gene87850.t1 | AT1G02720 | 27.900 | 319 | 185 | 11 | 358 | 665 | 77 | 361 | 1.89e-22 | 100 |
| MS.gene87850.t1 | AT4G02130 | 26.543 | 324 | 193 | 10 | 353 | 665 | 57 | 346 | 4.06e-22 | 99.0 |
| MS.gene87850.t1 | AT4G02130 | 26.543 | 324 | 193 | 10 | 353 | 665 | 57 | 346 | 4.06e-22 | 99.0 |
| MS.gene87850.t1 | AT4G02130 | 26.543 | 324 | 193 | 10 | 353 | 665 | 57 | 346 | 4.06e-22 | 99.0 |
| MS.gene87850.t1 | AT3G62660 | 26.498 | 317 | 185 | 10 | 358 | 663 | 79 | 358 | 6.86e-22 | 98.6 |
| MS.gene87850.t1 | AT3G06260 | 30.857 | 175 | 116 | 3 | 477 | 646 | 150 | 324 | 7.91e-22 | 98.2 |
| MS.gene87850.t1 | AT1G70090 | 25.868 | 317 | 194 | 10 | 358 | 663 | 78 | 364 | 1.40e-21 | 97.8 |
| MS.gene87850.t1 | AT1G70090 | 25.868 | 317 | 194 | 10 | 358 | 663 | 78 | 364 | 1.40e-21 | 97.8 |
| MS.gene87850.t1 | AT3G28340 | 29.958 | 237 | 149 | 9 | 443 | 667 | 126 | 357 | 6.42e-21 | 95.5 |
| MS.gene87850.t1 | AT1G19300 | 31.429 | 175 | 110 | 5 | 477 | 643 | 150 | 322 | 3.31e-19 | 90.1 |
| MS.gene87850.t1 | AT1G24170 | 24.290 | 317 | 199 | 9 | 358 | 663 | 81 | 367 | 1.01e-18 | 89.4 |
| MS.gene87850.t1 | AT3G50760 | 27.136 | 199 | 132 | 5 | 475 | 662 | 134 | 330 | 4.04e-16 | 80.9 |
| MS.gene87850.t1 | AT1G13250 | 26.235 | 324 | 196 | 11 | 353 | 666 | 51 | 341 | 7.57e-16 | 80.1 |
Find 140 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACTGATAAACTCAATTT+TGG | 0.156608 | 8.4:-62207916 | MS.gene87850:CDS |
| TTGAGCATCGAGAGATATTT+TGG | 0.169108 | 8.4:+62207691 | None:intergenic |
| CCAGGACTAATGACATTCTA+TGG | 0.236359 | 8.4:-62207208 | MS.gene87850:CDS |
| AGAAGGATTTGACAGGATTA+TGG | 0.240515 | 8.4:-62207591 | MS.gene87850:CDS |
| CTTTCGAAAAGGTTGATTTA+AGG | 0.265980 | 8.4:+62210196 | None:intergenic |
| TGTATCCAGCACAGATGATA+TGG | 0.277199 | 8.4:-62210072 | MS.gene87850:CDS |
| TCGTGGCATGTCCTTGGTTT+AGG | 0.294398 | 8.4:-62207163 | MS.gene87850:CDS |
| CGATGTCATCATCAAGAAAA+AGG | 0.314739 | 8.4:+62207620 | None:intergenic |
| TGACAAAGTATCGGCCTTAC+TGG | 0.316170 | 8.4:-62207051 | MS.gene87850:CDS |
| TCTAATTTAGGATAAACTTC+TGG | 0.323521 | 8.4:+62207649 | None:intergenic |
| ATATCACAAATGGCAAAATA+TGG | 0.336591 | 8.4:-62207377 | MS.gene87850:intron |
| ATTATGGGAAGTTGATCTTC+AGG | 0.339063 | 8.4:-62207575 | MS.gene87850:CDS |
| GATCTTCAGGGGAAAGTAAA+TGG | 0.342595 | 8.4:-62207562 | MS.gene87850:CDS |
| ATCTGTTGAGTCAGCCGTAC+TGG | 0.356409 | 8.4:-62208809 | MS.gene87850:CDS |
| AAAGAGAGTCAACATGCTTT+AGG | 0.370001 | 8.4:-62208631 | MS.gene87850:CDS |
| ATTCTTCTGTTCGGTTTATG+AGG | 0.374399 | 8.4:-62208741 | MS.gene87850:CDS |
| GTGAAGGAAGGAAGATCTTC+AGG | 0.374727 | 8.4:-62209801 | MS.gene87850:intron |
| TATGAGGGACCAGATCATTA+TGG | 0.376231 | 8.4:-62208725 | MS.gene87850:CDS |
| GAAGGATTTGACAGGATTAT+GGG | 0.385355 | 8.4:-62207590 | MS.gene87850:CDS |
| TCTTGTGTAACATGTGTTGT+TGG | 0.388574 | 8.4:+62209834 | None:intergenic |
| AATGAAAGAGTATTATTTCA+AGG | 0.389390 | 8.4:-62207767 | MS.gene87850:CDS |
| TACTGGGTAAATACAGCATT+TGG | 0.389876 | 8.4:-62208792 | MS.gene87850:CDS |
| GACAGGGTGCTTTGGAAGCT+GGG | 0.390513 | 8.4:-62207241 | MS.gene87850:CDS |
| CCCGTGCCTTTGACAGAACT+TGG | 0.391358 | 8.4:+62208464 | None:intergenic |
| TAGTACACGTCAAGAAATAA+AGG | 0.392316 | 8.4:-62208494 | MS.gene87850:CDS |
| AGACAGCTGATGAGAAAGTT+AGG | 0.401919 | 8.4:-62208390 | MS.gene87850:CDS |
| ACATGCCACGATTTATTTAG+TGG | 0.403063 | 8.4:+62207175 | None:intergenic |
| GATTCAAGCTGCCGCAATAC+AGG | 0.410074 | 8.4:+62207796 | None:intergenic |
| AATGCTTGTGGTTGGGCATA+TGG | 0.411331 | 8.4:-62207451 | MS.gene87850:CDS |
| TCAAAGTTTCTTGCAATATG+TGG | 0.412409 | 8.4:+62207478 | None:intergenic |
| TATGCCCAACCACAAGCATT+TGG | 0.412414 | 8.4:+62207454 | None:intergenic |
| AGTTAAGATATTTGTCAAAT+CGG | 0.415942 | 8.4:+62207509 | None:intergenic |
| CATTCTCTCCATCTGGCAGC+TGG | 0.416215 | 8.4:+62210234 | None:intergenic |
| GTTCCCTAGGAGTGAGAACT+TGG | 0.416886 | 8.4:-62208245 | MS.gene87850:CDS |
| GTGCAGAGGGTCTTACTCAC+TGG | 0.437169 | 8.4:-62209710 | MS.gene87850:intron |
| AGACAGGGTGCTTTGGAAGC+TGG | 0.437302 | 8.4:-62207242 | MS.gene87850:CDS |
| CAAAAGAAACCACATGTTCA+TGG | 0.440335 | 8.4:+62207891 | None:intergenic |
| AATTCCACTTGGTATGGTCT+TGG | 0.447689 | 8.4:+62208327 | None:intergenic |
| TGGGTTTCTATATTTCATAT+TGG | 0.450004 | 8.4:+62207711 | None:intergenic |
| GCGAAGGAAACCCCTCGCTT+TGG | 0.450681 | 8.4:+62214403 | None:intergenic |
| AGATGGAAAACATGCTTTGA+AGG | 0.460806 | 8.4:+62207940 | None:intergenic |
| AGAAGAACGAAACTCAAAAC+AGG | 0.462128 | 8.4:+62214352 | None:intergenic |
| GACTTCAAATGCTGCCTATG+AGG | 0.462603 | 8.4:-62209985 | MS.gene87850:intron |
| TGCATGCCATTCTCTCCATC+TGG | 0.464213 | 8.4:+62210227 | None:intergenic |
| AAAATGCTGATTCTTCTGTT+CGG | 0.464420 | 8.4:-62208750 | MS.gene87850:CDS |
| TTAACATATTTAGTCCAGTA+AGG | 0.464878 | 8.4:+62207037 | None:intergenic |
| AAGGAAACCCCTCGCTTTGG+CGG | 0.468661 | 8.4:+62214406 | None:intergenic |
| TAACTTGCATTTCTGCAGAT+AGG | 0.469528 | 8.4:+62207003 | None:intergenic |
| CCAAGTTCTGTCAAAGGCAC+GGG | 0.472286 | 8.4:-62208464 | MS.gene87850:CDS |
| AATAAATCGTGGCATGTCCT+TGG | 0.472321 | 8.4:-62207169 | MS.gene87850:CDS |
| AAAGAGTATTATTTCAAGGC+AGG | 0.473099 | 8.4:-62207763 | MS.gene87850:CDS |
| AGAATGAAGACAGGGTGCTT+TGG | 0.476034 | 8.4:-62207249 | MS.gene87850:CDS |
| TGAGTTTATCAGTAACAAGA+TGG | 0.477741 | 8.4:+62207923 | None:intergenic |
| ACGTCAAGAAATAAAGGCTA+TGG | 0.478191 | 8.4:-62208488 | MS.gene87850:CDS |
| CTAAAATTGTCAAGACTCAA+AGG | 0.478518 | 8.4:+62210047 | None:intergenic |
| CACATTAGTCCAAACCTCAT+AGG | 0.483893 | 8.4:+62209971 | None:intergenic |
| TGCTGCTGAGTTGGTAAAGA+TGG | 0.489018 | 8.4:-62208881 | MS.gene87850:CDS |
| TGATCCAAATGCTTGTGGTT+GGG | 0.490330 | 8.4:-62207458 | MS.gene87850:CDS |
| TGTTGCAAGAGCTGCAGTCT+AGG | 0.490652 | 8.4:-62208657 | MS.gene87850:CDS |
| CTGATTCAGATCTTCATCAC+AGG | 0.491823 | 8.4:-62208597 | MS.gene87850:intron |
| TATTGGAAGCACTAGAAGAA+AGG | 0.491924 | 8.4:+62207728 | None:intergenic |
| GCACTAGAAGAAAGGGTGGT+TGG | 0.493295 | 8.4:+62207736 | None:intergenic |
| CAGCTGCCAGATGGAGAGAA+TGG | 0.497605 | 8.4:-62210233 | MS.gene87850:CDS |
| TAGTGCATAATGATAAAGAC+TGG | 0.499652 | 8.4:+62208216 | None:intergenic |
| TGAGCTTGCCTCTTTCGAAA+AGG | 0.499717 | 8.4:+62210185 | None:intergenic |
| AGGCCCCATATCATCTGTGC+TGG | 0.501711 | 8.4:+62210067 | None:intergenic |
| TCTGCGTCATGGAGAGTTGT+TGG | 0.501808 | 8.4:-62210014 | MS.gene87850:CDS |
| CCCTTCGGACTTGTCGTGTA+GGG | 0.504060 | 8.4:+62209679 | None:intergenic |
| TATGACAGCAAGTTGGTCAC+TGG | 0.506011 | 8.4:-62208433 | MS.gene87850:CDS |
| ATTGGAAGCACTAGAAGAAA+GGG | 0.507070 | 8.4:+62207729 | None:intergenic |
| ATACCCTAGCCATAATGATC+TGG | 0.507931 | 8.4:+62208716 | None:intergenic |
| TTCTCCAAGTTCTCACTCCT+AGG | 0.508939 | 8.4:+62208241 | None:intergenic |
| CGACCGAAGAAGAAAACAAC+CGG | 0.513869 | 8.4:+62214316 | None:intergenic |
| TTATGGGAAGTTGATCTTCA+GGG | 0.517146 | 8.4:-62207574 | MS.gene87850:CDS |
| GTATCCAGCACAGATGATAT+GGG | 0.517429 | 8.4:-62210071 | MS.gene87850:CDS |
| TTCTTCTGTTCGGTTTATGA+GGG | 0.518856 | 8.4:-62208740 | MS.gene87850:CDS |
| TGATGACATCGTTGTTCAGA+AGG | 0.518905 | 8.4:-62207608 | MS.gene87850:CDS |
| CTCTATCAATGATCGATCTA+CGG | 0.519040 | 8.4:+62207129 | None:intergenic |
| ACGCAATGCCGCCAAAGCGA+GGG | 0.519731 | 8.4:-62214414 | None:intergenic |
| GTTGTTCAGAAGGATTTGAC+AGG | 0.522397 | 8.4:-62207598 | MS.gene87850:CDS |
| ATCAATGATCGATCTACGGT+TGG | 0.522553 | 8.4:+62207133 | None:intergenic |
| TCACTGGCATATATCACAAA+TGG | 0.525538 | 8.4:-62207387 | MS.gene87850:CDS |
| TTCAGCTGCTGCAAATAGAC+AGG | 0.526888 | 8.4:-62210352 | MS.gene87850:intron |
| GCAATGAATTCCACTTGGTA+TGG | 0.527610 | 8.4:+62208321 | None:intergenic |
| GGAAAAGCGTGCTGCTGAGT+TGG | 0.528593 | 8.4:-62208890 | MS.gene87850:CDS |
| CCATAGAATGTCATTAGTCC+TGG | 0.529892 | 8.4:+62207208 | None:intergenic |
| TTGATCCAAATGCTTGTGGT+TGG | 0.535817 | 8.4:-62207459 | MS.gene87850:CDS |
| CATGAACGTATTTGATCTCA+AGG | 0.549062 | 8.4:-62207428 | MS.gene87850:CDS |
| TAGAAGAAAGGGTGGTTGGA+TGG | 0.549689 | 8.4:+62207740 | None:intergenic |
| GCCAAGTTCTGTCAAAGGCA+CGG | 0.552166 | 8.4:-62208465 | MS.gene87850:CDS |
| TCTGTTGAGTCAGCCGTACT+GGG | 0.556493 | 8.4:-62208808 | MS.gene87850:CDS |
| CTGCCGCAATACAGGGCAGT+AGG | 0.560064 | 8.4:+62207804 | None:intergenic |
| CATCCTACTGCCCTGTATTG+CGG | 0.562221 | 8.4:-62207807 | MS.gene87850:CDS |
| AACTTTGATCCAAATGCTTG+TGG | 0.562703 | 8.4:-62207463 | MS.gene87850:CDS |
| ACCCTTCGGACTTGTCGTGT+AGG | 0.562800 | 8.4:+62209678 | None:intergenic |
| GGACCAGATCATTATGGCTA+GGG | 0.565156 | 8.4:-62208719 | MS.gene87850:CDS |
| CAGGACTAATGACATTCTAT+GGG | 0.566407 | 8.4:-62207207 | MS.gene87850:CDS |
| GGGGTTTCCTTCGCTAAGAA+CGG | 0.566743 | 8.4:-62214394 | MS.gene87850:CDS |
| GGGACCAGATCATTATGGCT+AGG | 0.569661 | 8.4:-62208720 | MS.gene87850:CDS |
| CAAGTTCTGTCAAAGGCACG+GGG | 0.571586 | 8.4:-62208463 | MS.gene87850:CDS |
| TACGCAATGCCGCCAAAGCG+AGG | 0.572776 | 8.4:-62214415 | None:intergenic |
| TTCGCTAAGAACGGAAGCAA+AGG | 0.572869 | 8.4:-62214385 | MS.gene87850:CDS |
| CTGGAAGATAGAATCTAAGA+TGG | 0.575970 | 8.4:+62207668 | None:intergenic |
| CGCAATGCCGCCAAAGCGAG+GGG | 0.577937 | 8.4:-62214413 | None:intergenic |
| TGGGTAAATACAGCATTTGG+AGG | 0.579641 | 8.4:-62208789 | MS.gene87850:CDS |
| TTTGCTTCCGTTCTTAGCGA+AGG | 0.586731 | 8.4:+62214387 | None:intergenic |
| AATGCTGTATTTACCCAGTA+CGG | 0.587071 | 8.4:+62208795 | None:intergenic |
| CGTCAAGAAATAAAGGCTAT+GGG | 0.590218 | 8.4:-62208487 | MS.gene87850:CDS |
| AAGCACATTCCTCAGTCAGT+TGG | 0.593627 | 8.4:-62208353 | MS.gene87850:CDS |
| TATGGGAAGTTGATCTTCAG+GGG | 0.594151 | 8.4:-62207573 | MS.gene87850:CDS |
| CTCAGCTGTTACAAATGCAA+AGG | 0.595673 | 8.4:-62208155 | MS.gene87850:intron |
| GACTGCAGCCAGCTGCCAGA+TGG | 0.596301 | 8.4:-62210242 | MS.gene87850:intron |
| TCTTCTCTGTGTTCTTACGC+CGG | 0.598718 | 8.4:-62214335 | MS.gene87850:CDS |
| ATTCAAGCTGCCGCAATACA+GGG | 0.605492 | 8.4:+62207797 | None:intergenic |
| CGATTGCCATGACAAAGTAT+CGG | 0.606224 | 8.4:-62207060 | MS.gene87850:CDS |
| TCTCCAAGTTCTCACTCCTA+GGG | 0.606744 | 8.4:+62208242 | None:intergenic |
| GCCCTACACGACAAGTCCGA+AGG | 0.608010 | 8.4:-62209680 | MS.gene87850:CDS |
| AAGCTGGGGACATTACCTCC+AGG | 0.613770 | 8.4:-62207226 | MS.gene87850:CDS |
| GTCATGGCAATCGCTAGCCA+CGG | 0.617762 | 8.4:+62207070 | None:intergenic |
| TATGGGCCAAGTTCTGTCAA+AGG | 0.623145 | 8.4:-62208470 | MS.gene87850:CDS |
| ACAGGGTGCTTTGGAAGCTG+GGG | 0.627413 | 8.4:-62207240 | MS.gene87850:CDS |
| GCAATTGTATGACAGCAAGT+TGG | 0.629238 | 8.4:-62208440 | MS.gene87850:CDS |
| TCTTGGCAGCCAACTGACTG+AGG | 0.635206 | 8.4:+62208344 | None:intergenic |
| CCCTACACGACAAGTCCGAA+GGG | 0.638020 | 8.4:-62209679 | MS.gene87850:intron |
| CACATCCACTAAATAAATCG+TGG | 0.639212 | 8.4:-62207180 | MS.gene87850:CDS |
| ACGTATTTGATCTCAAGGAG+TGG | 0.640381 | 8.4:-62207423 | MS.gene87850:CDS |
| GATAAGCAATGAATTCCACT+TGG | 0.641239 | 8.4:+62208316 | None:intergenic |
| AGTGCATAATGATAAAGACT+GGG | 0.649951 | 8.4:+62208217 | None:intergenic |
| GGAGGTAGTAATCTATTGTG+AGG | 0.655767 | 8.4:+62208287 | None:intergenic |
| GCAGCAGTTGTACACTACAA+TGG | 0.656287 | 8.4:-62207103 | MS.gene87850:CDS |
| GTAAGGCCGATACTTTGTCA+TGG | 0.657953 | 8.4:+62207054 | None:intergenic |
| TAGAATGTCATTAGTCCTGG+AGG | 0.659704 | 8.4:+62207211 | None:intergenic |
| TATCCAGCACAGATGATATG+GGG | 0.668316 | 8.4:-62210070 | MS.gene87850:CDS |
| GGAAGCACTAGAAGAAAGGG+TGG | 0.674642 | 8.4:+62207732 | None:intergenic |
| AACAGCTGAGTTCACAACAA+CGG | 0.690951 | 8.4:+62208168 | None:intergenic |
| TTGGACTATAACCTAAACCA+AGG | 0.700433 | 8.4:+62207152 | None:intergenic |
| ACAATGGTAATATGAAGCCG+TGG | 0.711006 | 8.4:-62207087 | MS.gene87850:CDS |
| GCTGCCAAGACCATACCAAG+TGG | 0.721158 | 8.4:-62208331 | MS.gene87850:CDS |
| AATGGTGCAGTTGAAACATG+TGG | 0.724609 | 8.4:-62207544 | MS.gene87850:CDS |
| AAGTTCTGTCAAAGGCACGG+GGG | 0.753594 | 8.4:-62208462 | MS.gene87850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 62206994 | 62214431 | 62206994 | ID=MS.gene87850 |
| chr8.4 | mRNA | 62206994 | 62214431 | 62206994 | ID=MS.gene87850.t1;Parent=MS.gene87850 |
| chr8.4 | exon | 62214299 | 62214431 | 62214299 | ID=MS.gene87850.t1.exon1;Parent=MS.gene87850.t1 |
| chr8.4 | CDS | 62214299 | 62214431 | 62214299 | ID=cds.MS.gene87850.t1;Parent=MS.gene87850.t1 |
| chr8.4 | exon | 62210353 | 62210387 | 62210353 | ID=MS.gene87850.t1.exon2;Parent=MS.gene87850.t1 |
| chr8.4 | CDS | 62210353 | 62210387 | 62210353 | ID=cds.MS.gene87850.t1;Parent=MS.gene87850.t1 |
| chr8.4 | exon | 62210194 | 62210256 | 62210194 | ID=MS.gene87850.t1.exon3;Parent=MS.gene87850.t1 |
| chr8.4 | CDS | 62210194 | 62210256 | 62210194 | ID=cds.MS.gene87850.t1;Parent=MS.gene87850.t1 |
| chr8.4 | exon | 62209986 | 62210108 | 62209986 | ID=MS.gene87850.t1.exon4;Parent=MS.gene87850.t1 |
| chr8.4 | CDS | 62209986 | 62210108 | 62209986 | ID=cds.MS.gene87850.t1;Parent=MS.gene87850.t1 |
| chr8.4 | exon | 62209802 | 62209865 | 62209802 | ID=MS.gene87850.t1.exon5;Parent=MS.gene87850.t1 |
| chr8.4 | CDS | 62209802 | 62209865 | 62209802 | ID=cds.MS.gene87850.t1;Parent=MS.gene87850.t1 |
| chr8.4 | exon | 62209680 | 62209726 | 62209680 | ID=MS.gene87850.t1.exon6;Parent=MS.gene87850.t1 |
| chr8.4 | CDS | 62209680 | 62209726 | 62209680 | ID=cds.MS.gene87850.t1;Parent=MS.gene87850.t1 |
| chr8.4 | exon | 62208598 | 62208932 | 62208598 | ID=MS.gene87850.t1.exon7;Parent=MS.gene87850.t1 |
| chr8.4 | CDS | 62208598 | 62208932 | 62208598 | ID=cds.MS.gene87850.t1;Parent=MS.gene87850.t1 |
| chr8.4 | exon | 62208156 | 62208513 | 62208156 | ID=MS.gene87850.t1.exon8;Parent=MS.gene87850.t1 |
| chr8.4 | CDS | 62208156 | 62208513 | 62208156 | ID=cds.MS.gene87850.t1;Parent=MS.gene87850.t1 |
| chr8.4 | exon | 62207378 | 62207965 | 62207378 | ID=MS.gene87850.t1.exon9;Parent=MS.gene87850.t1 |
| chr8.4 | CDS | 62207378 | 62207965 | 62207378 | ID=cds.MS.gene87850.t1;Parent=MS.gene87850.t1 |
| chr8.4 | exon | 62206994 | 62207269 | 62206994 | ID=MS.gene87850.t1.exon10;Parent=MS.gene87850.t1 |
| chr8.4 | CDS | 62206994 | 62207269 | 62206994 | ID=cds.MS.gene87850.t1;Parent=MS.gene87850.t1 |
| Gene Sequence |
| Protein sequence |
