AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene88031


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88031.t1 MTR_1g067710 97.710 131 3 0 158 288 6 136 8.10e-90 263
MS.gene88031.t1 MTR_1g067720 98.438 128 2 0 1 128 1 128 2.08e-85 253
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88031.t1 AT1G33500 46.454 282 123 3 1 282 1 254 2.54e-79 241
MS.gene88031.t1 AT1G33500 46.454 282 123 3 1 282 1 254 2.54e-79 241
MS.gene88031.t1 AT1G33500 46.008 263 114 3 1 263 1 235 2.60e-69 216

Find 45 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCAGAGAAAATGAGTTTA+AGG 0.175370 4.3:+69672495 MS.gene88031:CDS
CTTGAAATCGACATCGATTC+AGG 0.236215 4.3:+69668945 MS.gene88031:CDS
AAGAGCAAACCTGTTGCTTT+TGG 0.247212 4.3:-69670826 None:intergenic
CATAGACTATGGAGCTTATT+CGG 0.287182 4.3:+69670648 MS.gene88031:intron
CTCCATAGACTGCAAGTATT+CGG 0.336412 4.3:-69672861 None:intergenic
GTGAAATACCAGGTTATCTA+TGG 0.360390 4.3:-69672059 None:intergenic
AACCGAATACTTGCAGTCTA+TGG 0.365243 4.3:+69672859 MS.gene88031:CDS
CTAGATAAAACTTGCTATTG+AGG 0.411209 4.3:+69672465 MS.gene88031:intron
TTCTTCAGCGGAAATCTTTG+CGG 0.422696 4.3:-69668895 None:intergenic
TGCGCAAGTGGTTGAGGATA+CGG 0.426376 4.3:+69669736 MS.gene88031:CDS
GGTCAAATTCCAAAAGCAAC+AGG 0.452579 4.3:+69670817 MS.gene88031:CDS
CTTATTCGGCAAGAGAAAGT+TGG 0.460862 4.3:+69670662 MS.gene88031:CDS
TGAAATTGCGCAAGTGGTTG+AGG 0.474763 4.3:+69669730 MS.gene88031:CDS
CTCTGCAACCTTGCTATAGT+AGG 0.484365 4.3:-69670786 None:intergenic
TATGAAATCCAAGGTTCTCA+TGG 0.508723 4.3:+69672213 MS.gene88031:CDS
GTTAATGTCCATGAGAACCT+TGG 0.514632 4.3:-69672221 None:intergenic
CAGTCTATGGAGAAACAAGT+AGG 0.519458 4.3:+69672872 MS.gene88031:CDS
GAAATCTGAAATTGCGCAAG+TGG 0.536096 4.3:+69669724 MS.gene88031:CDS
GAACAACTTAATCACCGACT+TGG 0.538513 4.3:+69672156 MS.gene88031:CDS
CATCTGCATTTGTTCTTCAG+CGG 0.539546 4.3:-69668907 None:intergenic
GCAAGGTTGCAGAGGACATG+AGG 0.576893 4.3:+69670795 MS.gene88031:CDS
TTTCAGAGCCTACTATAGCA+AGG 0.583687 4.3:+69670778 MS.gene88031:intron
TGATATAACCGCTCTTGAAG+AGG 0.585407 4.3:+69672802 MS.gene88031:CDS
AGTCTATGGAGAAACAAGTA+GGG 0.599025 4.3:+69672873 MS.gene88031:CDS
GATTCTTGTTATGAAATCCA+AGG 0.599940 4.3:+69672204 MS.gene88031:CDS
CTACTATAGCAAGGTTGCAG+AGG 0.600848 4.3:+69670787 MS.gene88031:CDS
TAACCGTGCCATAGATAACC+TGG 0.601390 4.3:+69672051 MS.gene88031:CDS
TGCTTTAGCTGAATCCAAGT+CGG 0.607104 4.3:-69672170 None:intergenic
GGAAAAGATGAATAAGTCGA+AGG 0.609770 4.3:+69669757 MS.gene88031:CDS
GCAGGGAGGACTAGTGCTGA+TGG 0.612143 4.3:+69672028 MS.gene88031:intron
CAGAACTAAGAAGATTAGCA+TGG 0.612386 4.3:+69671121 MS.gene88031:CDS
ACTTGGATTCAGCTAAAGCA+AGG 0.613498 4.3:+69672173 MS.gene88031:CDS
ATTATATTCCTCTTCAAGAG+CGG 0.617481 4.3:-69672810 None:intergenic
AAAACTGATTTCAGATGCGG+AGG 0.626254 4.3:+69668866 MS.gene88031:intron
CAAGGTTGCAGAGGACATGA+GGG 0.630622 4.3:+69670796 MS.gene88031:CDS
GAGCAAAGAAGTGAAGCTGA+AGG 0.646320 4.3:+69671862 MS.gene88031:CDS
CAACTTATAAAATGTGCTTG+TGG 0.646559 4.3:+69673119 MS.gene88031:CDS
TATAAAATGTGCTTGTGGTG+AGG 0.649465 4.3:+69673124 MS.gene88031:CDS
TGATACATCCAGACTTACAC+AGG 0.652836 4.3:+69669835 MS.gene88031:CDS
CTGCTAAACTATCACAGAGG+AGG 0.653915 4.3:+69670690 MS.gene88031:CDS
ATACCAGGTTATCTATGGCA+CGG 0.659008 4.3:-69672054 None:intergenic
ACTTTACGCTCTCACATGAA+CGG 0.662038 4.3:+69668767 MS.gene88031:CDS
GAAACAAGTAGGGAAACTCA+AGG 0.667054 4.3:+69672883 MS.gene88031:CDS
GGTTCTCATGGACATTAACA+AGG 0.678444 4.3:+69672225 MS.gene88031:CDS
TATCTGCTAAACTATCACAG+AGG 0.800804 4.3:+69670687 MS.gene88031:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATATCATAAACATTT+AGG + chr4.3:69670055-69670074 MS.gene88031:intron 10.0%
!!! ATCAAAATTTTGTAAATATA+TGG + chr4.3:69669621-69669640 MS.gene88031:intron 10.0%
!! AAAATGAAAATCAATTTAGA+TGG - chr4.3:69670761-69670780 None:intergenic 15.0%
!! AAAGTAATTATCAACAAAAT+AGG + chr4.3:69672947-69672966 MS.gene88031:intron 15.0%
!! AATATCAAAAAACAAAAATG+TGG - chr4.3:69671913-69671932 None:intergenic 15.0%
!! AATCAAAATTTCTATAGTAT+TGG + chr4.3:69669313-69669332 MS.gene88031:intron 15.0%
!! ATTAACTTTAACAATATCAA+AGG - chr4.3:69669876-69669895 None:intergenic 15.0%
!! TAATGTAAAAATAGAATTTG+AGG + chr4.3:69670117-69670136 MS.gene88031:intron 15.0%
!! TCAATATATTTGTATGAATA+AGG - chr4.3:69671178-69671197 None:intergenic 15.0%
!! TCTATTTCCTAATAAAATTA+TGG - chr4.3:69671233-69671252 None:intergenic 15.0%
!!! AGATTTTCTTTATTTTATCT+CGG - chr4.3:69671748-69671767 None:intergenic 15.0%
!!! ATCAATTTAGTTTCATAAAA+CGG - chr4.3:69671978-69671997 None:intergenic 15.0%
!!! CTAATTTTTATAACTAAACT+TGG + chr4.3:69669931-69669950 MS.gene88031:intron 15.0%
!!! TTTTTACATTAAGAATGTAA+AGG - chr4.3:69670108-69670127 None:intergenic 15.0%
!!! TTTTTATTTCATCATTATCA+AGG - chr4.3:69670549-69670568 None:intergenic 15.0%
!! AAACTTTGTATAACTCTTTA+CGG + chr4.3:69670469-69670488 MS.gene88031:intron 20.0%
!! AAATAAGATCTAACAATTGA+AGG - chr4.3:69671771-69671790 None:intergenic 20.0%
!! AAGAACAAATTAAAACATTG+AGG - chr4.3:69671055-69671074 None:intergenic 20.0%
!! ACAAATATATTGAGATCATT+AGG + chr4.3:69671185-69671204 MS.gene88031:intron 20.0%
!! AGAACAAATTAAAACATTGA+GGG - chr4.3:69671054-69671073 None:intergenic 20.0%
!! ATTATTGGATTTGATATGAA+TGG + chr4.3:69670849-69670868 MS.gene88031:intron 20.0%
!! CTTATCAGATTTATTGTATT+TGG - chr4.3:69671718-69671737 None:intergenic 20.0%
!! TATTTGTATGAATAAGGAAA+AGG - chr4.3:69671172-69671191 None:intergenic 20.0%
!! TTATTCATTACTCAAGTTAT+TGG + chr4.3:69672278-69672297 MS.gene88031:intron 20.0%
!!! ATATCATAAACATTTAGGTT+TGG + chr4.3:69670060-69670079 MS.gene88031:intron 20.0%
!!! ATTTTGTAAATATATGGAAG+TGG + chr4.3:69669627-69669646 MS.gene88031:intron 20.0%
!!! GTTTTTTATTGTGTAATCAA+TGG + chr4.3:69669959-69669978 MS.gene88031:intron 20.0%
!!! GTTTTTTGATATTAATCTTC+TGG + chr4.3:69671920-69671939 MS.gene88031:intron 20.0%
!!! TAACTTGTAAAATTTTCCAT+TGG - chr4.3:69672924-69672943 None:intergenic 20.0%
!!! TCAGATTTTGATGTAAAATT+AGG - chr4.3:69668834-69668853 None:intergenic 20.0%
!!! TGTTTTAATTTGTTCTTTCA+CGG + chr4.3:69671058-69671077 MS.gene88031:intron 20.0%
! AAAAGGATTGAAGAATTGTA+AGG - chr4.3:69668799-69668818 None:intergenic 25.0%
! AAACAAATGTTGACATCAAA+AGG + chr4.3:69670930-69670949 MS.gene88031:intron 25.0%
! AACGAAACAATCAAAATTTG+TGG + chr4.3:69669013-69669032 MS.gene88031:intron 25.0%
! AACTTTGTATAACTCTTTAC+GGG + chr4.3:69670470-69670489 MS.gene88031:intron 25.0%
! ATAAAAAGAAAAGAAAAGCC+AGG + chr4.3:69670562-69670581 MS.gene88031:intron 25.0%
! ATCAAAAGGTGAATTAATCA+GGG + chr4.3:69670944-69670963 MS.gene88031:intron 25.0%
! CTATTCATTACTCTAGTTAT+TGG + chr4.3:69672304-69672323 MS.gene88031:intron 25.0%
! CTTATATGTTGAATTTATGC+AGG + chr4.3:69671822-69671841 MS.gene88031:intron 25.0%
! GAATAATTGACAGTCTAAAA+AGG - chr4.3:69672264-69672283 None:intergenic 25.0%
! GATCACCATTAAAATCTATT+GGG + chr4.3:69671606-69671625 MS.gene88031:intron 25.0%
! TCATAATATAAGCATTAGTG+TGG - chr4.3:69670251-69670270 None:intergenic 25.0%
! TGATCACCATTAAAATCTAT+TGG + chr4.3:69671605-69671624 MS.gene88031:intron 25.0%
! TGCTATAGTATTCTTAGATT+TGG + chr4.3:69669475-69669494 MS.gene88031:intron 25.0%
! TGTAAAAATAGAATTTGAGG+TGG + chr4.3:69670120-69670139 MS.gene88031:intron 25.0%
! TTACAGATAATTACAATCTG+AGG - chr4.3:69669655-69669674 None:intergenic 25.0%
! TTGCAACTAATAGAAATCTT+TGG + chr4.3:69671087-69671106 MS.gene88031:intron 25.0%
!! ACAGCAACCATAATTTTATT+AGG + chr4.3:69671223-69671242 MS.gene88031:intron 25.0%
!! ATAACACCATTTGAAATACA+TGG + chr4.3:69670969-69670988 MS.gene88031:intron 25.0%
!! ATATATGCTTCTGATTTTAC+AGG + chr4.3:69673088-69673107 MS.gene88031:intron 25.0%
!! GATTTCATCAGTTAATGTTT+TGG + chr4.3:69670011-69670030 MS.gene88031:intron 25.0%
!! TAATGTAATTTTCATCGATC+CGG + chr4.3:69669264-69669283 MS.gene88031:intron 25.0%
!! TTATCTGTAAATTTTCGATC+TGG + chr4.3:69669665-69669684 MS.gene88031:intron 25.0%
!!! AAGTCAACTCGATTTTTTTT+AGG - chr4.3:69671639-69671658 None:intergenic 25.0%
!!! ATCATTTTTTTTGCACCATA+TGG + chr4.3:69672357-69672376 MS.gene88031:intron 25.0%
!!! ATTAGTTTGTCAAAACATGT+TGG - chr4.3:69671320-69671339 None:intergenic 25.0%
!!! CAATTTAGAGTTTTAACCAT+CGG + chr4.3:69671491-69671510 MS.gene88031:intron 25.0%
!!! CATGTTTTGACAAACTAATT+AGG + chr4.3:69671321-69671340 MS.gene88031:intron 25.0%
!!! GTGTTCAATTTTAGTGTTTA+TGG + chr4.3:69668983-69669002 MS.gene88031:intron 25.0%
!!! GTGTTTTAATGTCATTTTCT+TGG + chr4.3:69669563-69669582 MS.gene88031:intron 25.0%
!!! TTCTATAGTATTGGTAGATT+TGG + chr4.3:69669322-69669341 MS.gene88031:intron 25.0%
AACTAATAGAAATCTTTGGC+AGG + chr4.3:69671091-69671110 MS.gene88031:intron 30.0%
AAGCATATATCCATGATTGA+AGG - chr4.3:69673078-69673097 None:intergenic 30.0%
ACTTTGTATAACTCTTTACG+GGG + chr4.3:69670471-69670490 MS.gene88031:intron 30.0%
AGCATATATCCATGATTGAA+GGG - chr4.3:69673077-69673096 None:intergenic 30.0%
ATATTTCTTCCCATAGACTA+TGG + chr4.3:69670637-69670656 MS.gene88031:intron 30.0%
ATTATATTCCTCTTCAAGAG+CGG - chr4.3:69672813-69672832 None:intergenic 30.0%
CAACTTATAAAATGTGCTTG+TGG + chr4.3:69673119-69673138 MS.gene88031:CDS 30.0%
CATCAAAAGGTGAATTAATC+AGG + chr4.3:69670943-69670962 MS.gene88031:intron 30.0%
CATTAAAACACAACGTGAAT+CGG - chr4.3:69669554-69669573 None:intergenic 30.0%
CGATGGTTAAAACTCTAAAT+TGG - chr4.3:69671493-69671512 None:intergenic 30.0%
GTAAAATAGGTTTAGTCCAA+TGG + chr4.3:69672905-69672924 MS.gene88031:intron 30.0%
GTTTCAAATGCTTTACCATA+TGG - chr4.3:69672375-69672394 None:intergenic 30.0%
TAATTTATCTTTGTCCGACA+GGG + chr4.3:69672121-69672140 MS.gene88031:intron 30.0%
TATAATGAACTTAACCTGCA+GGG + chr4.3:69672011-69672030 MS.gene88031:intron 30.0%
TCATATCATTCAATACTGCA+AGG - chr4.3:69671417-69671436 None:intergenic 30.0%
TTAGGTTTGATGAAGTGAAA+AGG - chr4.3:69668816-69668835 None:intergenic 30.0%
TTCTCACTATTTGTATACAG+TGG + chr4.3:69669212-69669231 MS.gene88031:intron 30.0%
! AACAGGTTTGCTCTTATTAT+TGG + chr4.3:69670834-69670853 MS.gene88031:intron 30.0%
! AAGAAAGCATAAAGAGAAGA+AGG - chr4.3:69672417-69672436 None:intergenic 30.0%
! ATGTCATTTACTCATTTCCA+CGG + chr4.3:69669125-69669144 MS.gene88031:intron 30.0%
! GAGTGTCTTTGTACATTTTA+TGG + chr4.3:69670731-69670750 MS.gene88031:intron 30.0%
! GATTCTTGTTATGAAATCCA+AGG + chr4.3:69672204-69672223 MS.gene88031:CDS 30.0%
! GTTGCTTATGTACTTAGTTT+TGG + chr4.3:69672326-69672345 MS.gene88031:intron 30.0%
! TCTCTTGCTATCATATATTG+CGG + chr4.3:69669070-69669089 MS.gene88031:intron 30.0%
! TCTGTTTCAATCGATTCTTT+CGG + chr4.3:69671554-69671573 MS.gene88031:intron 30.0%
! TTGGACCCAATAGATTTTAA+TGG - chr4.3:69671614-69671633 None:intergenic 30.0%
! TTTTTCACTATCATATGCTG+CGG + chr4.3:69669361-69669380 MS.gene88031:intron 30.0%
!! AAAATCGAGTTGACTTTAAG+CGG + chr4.3:69671643-69671662 MS.gene88031:intron 30.0%
!! CTAGATAAAACTTGCTATTG+AGG + chr4.3:69672465-69672484 MS.gene88031:intron 30.0%
!! TTTTACTACCAAATTGACTC+CGG - chr4.3:69670451-69670470 None:intergenic 30.0%
!!! ACTCGATTTTTTTTAGGTGT+TGG - chr4.3:69671633-69671652 None:intergenic 30.0%
!!! GATTTAGCTTTTCTCTTAAC+TGG + chr4.3:69672676-69672695 MS.gene88031:intron 30.0%
AACATCAGAAACGCATAACA+AGG - chr4.3:69670609-69670628 None:intergenic 35.0%
AAGCATAAAGAGAAGAAGGA+AGG - chr4.3:69672413-69672432 None:intergenic 35.0%
AATTTATCTTTGTCCGACAG+GGG + chr4.3:69672122-69672141 MS.gene88031:intron 35.0%
ACTGTTTCCATATGCTGTAT+TGG + chr4.3:69670166-69670185 MS.gene88031:intron 35.0%
AGCATAAAGAGAAGAAGGAA+GGG - chr4.3:69672412-69672431 None:intergenic 35.0%
AGGGAAACTCAAGGTAAAAT+AGG + chr4.3:69672892-69672911 MS.gene88031:intron 35.0%
AGTCTATGGAGAAACAAGTA+GGG + chr4.3:69672873-69672892 MS.gene88031:CDS 35.0%
ATAGAAATCTTTGGCAGGAA+TGG + chr4.3:69671096-69671115 MS.gene88031:intron 35.0%
ATATATCCATGATTGAAGGG+GGG - chr4.3:69673074-69673093 None:intergenic 35.0%
ATTAGTCCCAATACAGCATA+TGG - chr4.3:69670176-69670195 None:intergenic 35.0%
ATTCAACTCAGTTTCTCTCT+CGG - chr4.3:69671585-69671604 None:intergenic 35.0%
CAGAACTAAGAAGATTAGCA+TGG + chr4.3:69671121-69671140 MS.gene88031:CDS 35.0%
CATAGACTATGGAGCTTATT+CGG + chr4.3:69670648-69670667 MS.gene88031:intron 35.0%
CATATATCCATGATTGAAGG+GGG - chr4.3:69673075-69673094 None:intergenic 35.0%
CTGTTTCCATATGCTGTATT+GGG + chr4.3:69670167-69670186 MS.gene88031:intron 35.0%
CTTAGACTAAGAACAGTGTT+TGG - chr4.3:69669153-69669172 None:intergenic 35.0%
CTTCAGCTATAGACTAAGTT+TGG - chr4.3:69669437-69669456 None:intergenic 35.0%
CTTCAGTTTCACATTGCAAA+TGG - chr4.3:69669900-69669919 None:intergenic 35.0%
GAAGCACAGATTGATGAAAA+AGG - chr4.3:69672084-69672103 None:intergenic 35.0%
GAATAAGCTCCATAGTCTAT+GGG - chr4.3:69670649-69670668 None:intergenic 35.0%
GATGAAAAAGGTGAAATACC+AGG - chr4.3:69672072-69672091 None:intergenic 35.0%
GCATATATCCATGATTGAAG+GGG - chr4.3:69673076-69673095 None:intergenic 35.0%
GGAAAAGATGAATAAGTCGA+AGG + chr4.3:69669757-69669776 MS.gene88031:CDS 35.0%
GGGATTGATTACGAAGAATT+TGG + chr4.3:69670498-69670517 MS.gene88031:intron 35.0%
GTAATTTATCTTTGTCCGAC+AGG + chr4.3:69672120-69672139 MS.gene88031:intron 35.0%
GTATAATGAACTTAACCTGC+AGG + chr4.3:69672010-69672029 MS.gene88031:intron 35.0%
GTGAAATACCAGGTTATCTA+TGG - chr4.3:69672062-69672081 None:intergenic 35.0%
GTGCAGAGAAAATGAGTTTA+AGG + chr4.3:69672495-69672514 MS.gene88031:CDS 35.0%
TAATCAATGGTCCTTTCTAG+TGG + chr4.3:69669972-69669991 MS.gene88031:intron 35.0%
TATAAAATGTGCTTGTGGTG+AGG + chr4.3:69673124-69673143 MS.gene88031:CDS 35.0%
TATCATGCATTCCACTAGAA+AGG - chr4.3:69669986-69670005 None:intergenic 35.0%
TATCTGCTAAACTATCACAG+AGG + chr4.3:69670687-69670706 MS.gene88031:CDS 35.0%
TATGAAATCCAAGGTTCTCA+TGG + chr4.3:69672213-69672232 MS.gene88031:CDS 35.0%
TGATGTCAACATTTGTTTCC+AGG - chr4.3:69670928-69670947 None:intergenic 35.0%
TGCATGAAATAATAGACACC+TGG + chr4.3:69670907-69670926 MS.gene88031:intron 35.0%
TGCTGACCATGTATTTCAAA+TGG - chr4.3:69670978-69670997 None:intergenic 35.0%
TTCACATGATGTCCTTATGT+GGG - chr4.3:69671677-69671696 None:intergenic 35.0%
TTCGAATTAAGTGTGAAGTC+CGG + chr4.3:69670429-69670448 MS.gene88031:intron 35.0%
! ATAGTTCTTTACCTTTGGAG+TGG + chr4.3:69670875-69670894 MS.gene88031:intron 35.0%
! CAGTAACTTGTCAGTAAAGA+TGG - chr4.3:69671795-69671814 None:intergenic 35.0%
! CATCTGTTCGACTTTTACAT+AGG - chr4.3:69673042-69673061 None:intergenic 35.0%
! CTGAAAACTGATTTCAGATG+CGG + chr4.3:69668863-69668882 MS.gene88031:intron 35.0%
! CTGTTTCAATCGATTCTTTC+GGG + chr4.3:69671555-69671574 MS.gene88031:intron 35.0%
! TTTGAAATACATGGTCAGCA+TGG + chr4.3:69670978-69670997 MS.gene88031:intron 35.0%
!!! CAGATTTTTTTTTCCTCTCC+TGG - chr4.3:69670583-69670602 None:intergenic 35.0%
AACCGAATACTTGCAGTCTA+TGG + chr4.3:69672859-69672878 MS.gene88031:CDS 40.0%
AAGAAAAGAAAAGCCAGGAG+AGG + chr4.3:69670567-69670586 MS.gene88031:intron 40.0%
AATCAGAGTTACAGCAGCAT+TGG + chr4.3:69671253-69671272 MS.gene88031:intron 40.0%
ACATGGTCAGCATGGAAATT+TGG + chr4.3:69670986-69671005 MS.gene88031:intron 40.0%
ACTTGGATTCAGCTAAAGCA+AGG + chr4.3:69672173-69672192 MS.gene88031:CDS 40.0%
ACTTTACGCTCTCACATGAA+CGG + chr4.3:69668767-69668786 MS.gene88031:CDS 40.0%
ATAACTCTTTACGGGGCTTT+GGG + chr4.3:69670478-69670497 MS.gene88031:intron 40.0%
ATACCAGGTTATCTATGGCA+CGG - chr4.3:69672057-69672076 None:intergenic 40.0%
CAATCTGTGCTTCACAAAGT+TGG + chr4.3:69672091-69672110 MS.gene88031:intron 40.0%
CAGTCTATGGAGAAACAAGT+AGG + chr4.3:69672872-69672891 MS.gene88031:CDS 40.0%
CATCTGCATTTGTTCTTCAG+CGG - chr4.3:69668910-69668929 None:intergenic 40.0%
CATGCACGTATATAGAGAGA+TGG + chr4.3:69672564-69672583 MS.gene88031:intron 40.0%
CCAGACTTACACAGGTAAAA+AGG + chr4.3:69669843-69669862 MS.gene88031:intron 40.0%
CGAATAAGCTCCATAGTCTA+TGG - chr4.3:69670650-69670669 None:intergenic 40.0%
CTCAGGCTAGATCATTCATT+TGG - chr4.3:69672771-69672790 None:intergenic 40.0%
CTCCATAGACTGCAAGTATT+CGG - chr4.3:69672864-69672883 None:intergenic 40.0%
CTTATTCGGCAAGAGAAAGT+TGG + chr4.3:69670662-69670681 MS.gene88031:CDS 40.0%
CTTCACATGATGTCCTTATG+TGG - chr4.3:69671678-69671697 None:intergenic 40.0%
GAAACAAGTAGGGAAACTCA+AGG + chr4.3:69672883-69672902 MS.gene88031:CDS 40.0%
GCAATGTGAAACTGAAGCAA+TGG + chr4.3:69669903-69669922 MS.gene88031:intron 40.0%
GGTCAAATTCCAAAAGCAAC+AGG + chr4.3:69670817-69670836 MS.gene88031:CDS 40.0%
GGTGCATAGTTCTTTACCTT+TGG + chr4.3:69670870-69670889 MS.gene88031:intron 40.0%
GGTTCTCATGGACATTAACA+AGG + chr4.3:69672225-69672244 MS.gene88031:CDS 40.0%
GTTAATGTCCATGAGAACCT+TGG - chr4.3:69672224-69672243 None:intergenic 40.0%
TACAGCATATGGAAACAGTC+AGG - chr4.3:69670165-69670184 None:intergenic 40.0%
TATAACTCTTTACGGGGCTT+TGG + chr4.3:69670477-69670496 MS.gene88031:intron 40.0%
TATCACAGAGGAGGTAAATG+AGG + chr4.3:69670699-69670718 MS.gene88031:intron 40.0%
TATTTGGATTCTCTCATGCG+TGG - chr4.3:69671702-69671721 None:intergenic 40.0%
TGATACATCCAGACTTACAC+AGG + chr4.3:69669835-69669854 MS.gene88031:CDS 40.0%
TGATATAACCGCTCTTGAAG+AGG + chr4.3:69672802-69672821 MS.gene88031:CDS 40.0%
TGCTTCACAAAGTTGGAATC+TGG + chr4.3:69672098-69672117 MS.gene88031:intron 40.0%
TGCTTTAGCTGAATCCAAGT+CGG - chr4.3:69672173-69672192 None:intergenic 40.0%
TGTCAAAACATGTTGGTCGT+AGG - chr4.3:69671313-69671332 None:intergenic 40.0%
TTCTTACACTACAGACAGTC+CGG - chr4.3:69669286-69669305 None:intergenic 40.0%
TTCTTCAGCGGAAATCTTTG+CGG - chr4.3:69668898-69668917 None:intergenic 40.0%
TTTCAGAGCCTACTATAGCA+AGG + chr4.3:69670778-69670797 MS.gene88031:intron 40.0%
! AAAACTGATTTCAGATGCGG+AGG + chr4.3:69668866-69668885 MS.gene88031:intron 40.0%
! CCTTTTTACCTGTGTAAGTC+TGG - chr4.3:69669846-69669865 None:intergenic 40.0%
! GAAATCTGAAATTGCGCAAG+TGG + chr4.3:69669724-69669743 MS.gene88031:CDS 40.0%
! GAACAACTTAATCACCGACT+TGG + chr4.3:69672156-69672175 MS.gene88031:CDS 40.0%
!! CTTGAAATCGACATCGATTC+AGG + chr4.3:69668945-69668964 MS.gene88031:CDS 40.0%
!!! AAGAGCAAACCTGTTGCTTT+TGG - chr4.3:69670829-69670848 None:intergenic 40.0%
!!! ATATCAGCTGCTTTTAGCTC+AGG - chr4.3:69672788-69672807 None:intergenic 40.0%
!!! GCTGCGGTTTAGTTTTTCTT+CGG + chr4.3:69669377-69669396 MS.gene88031:intron 40.0%
AACATGTTGGTCGTAGGACT+TGG - chr4.3:69671307-69671326 None:intergenic 45.0%
AAGAACAGTGTTTGGATCCG+TGG - chr4.3:69669145-69669164 None:intergenic 45.0%
AAGAAGTGAAGCTGAAGGCA+TGG + chr4.3:69671867-69671886 MS.gene88031:intron 45.0%
AATGAACTTAACCTGCAGGG+AGG + chr4.3:69672014-69672033 MS.gene88031:intron 45.0%
CAAGGAGCTTATGTCAGAAC+TGG - chr4.3:69671399-69671418 None:intergenic 45.0%
CCAATGCTTCAGCAAGTACA+GGG + chr4.3:69671531-69671550 MS.gene88031:intron 45.0%
CTACTATAGCAAGGTTGCAG+AGG + chr4.3:69670787-69670806 MS.gene88031:CDS 45.0%
CTGCTAAACTATCACAGAGG+AGG + chr4.3:69670690-69670709 MS.gene88031:CDS 45.0%
GAGCAAAGAAGTGAAGCTGA+AGG + chr4.3:69671862-69671881 MS.gene88031:CDS 45.0%
GGTGGATGTGAAGAAAAGAG+AGG + chr4.3:69670138-69670157 MS.gene88031:intron 45.0%
TAACCGTGCCATAGATAACC+TGG + chr4.3:69672051-69672070 MS.gene88031:CDS 45.0%
TAGTTTCCCCCCTTCAATCA+TGG + chr4.3:69673065-69673084 MS.gene88031:intron 45.0%
TGAAATTGCGCAAGTGGTTG+AGG + chr4.3:69669730-69669749 MS.gene88031:CDS 45.0%
TGTGAAGTCCGGAGTCAATT+TGG + chr4.3:69670440-69670459 MS.gene88031:intron 45.0%
! CCAGAAAAAGCTTGCTTCGT+TGG + chr4.3:69669808-69669827 MS.gene88031:CDS 45.0%
! CCTGTACTTGCTGAAGCATT+GGG - chr4.3:69671533-69671552 None:intergenic 45.0%
! CTCTGCAACCTTGCTATAGT+AGG - chr4.3:69670789-69670808 None:intergenic 45.0%
! GCTCTTTTGTCTGACAAAGC+TGG + chr4.3:69672833-69672852 MS.gene88031:CDS 45.0%
!! CCAACGAAGCAAGCTTTTTC+TGG - chr4.3:69669811-69669830 None:intergenic 45.0%
!! CTGTACTTGCTGAAGCATTG+GGG - chr4.3:69671532-69671551 None:intergenic 45.0%
!! TGAAGCATTGGGGGTTAGAT+GGG - chr4.3:69671522-69671541 None:intergenic 45.0%
!! TGTACTTGCTGAAGCATTGG+GGG - chr4.3:69671531-69671550 None:intergenic 45.0%
!! TTCTTTACCTTTGGAGTGGC+AGG + chr4.3:69670879-69670898 MS.gene88031:intron 45.0%
CAAGGTTGCAGAGGACATGA+GGG + chr4.3:69670796-69670815 MS.gene88031:CDS 50.0%
CCCAATGCTTCAGCAAGTAC+AGG + chr4.3:69671530-69671549 MS.gene88031:intron 50.0%
GCGGTTAGATCTCCCACATA+AGG + chr4.3:69671662-69671681 MS.gene88031:intron 50.0%
TCTTTGCATCACTCCCCTGT+CGG - chr4.3:69672138-69672157 None:intergenic 50.0%
TGCGCAAGTGGTTGAGGATA+CGG + chr4.3:69669736-69669755 MS.gene88031:CDS 50.0%
! CCCTGTACTTGCTGAAGCAT+TGG - chr4.3:69671534-69671553 None:intergenic 50.0%
! GTTGGTCGTAGGACTTGGTT+GGG - chr4.3:69671302-69671321 None:intergenic 50.0%
! TGTTGGTCGTAGGACTTGGT+TGG - chr4.3:69671303-69671322 None:intergenic 50.0%
! TTGGTCGTAGGACTTGGTTG+GGG - chr4.3:69671301-69671320 None:intergenic 50.0%
!! CTGAAGCATTGGGGGTTAGA+TGG - chr4.3:69671523-69671542 None:intergenic 50.0%
!! GAAGCATTGGGGGTTAGATG+GGG - chr4.3:69671521-69671540 None:intergenic 50.0%
GCAAGGTTGCAGAGGACATG+AGG + chr4.3:69670795-69670814 MS.gene88031:CDS 55.0%
GGTTAGATGGGGATTGCCGA+TGG - chr4.3:69671510-69671529 None:intergenic 55.0%
CATCGAGCCTGCCACTCCAA+AGG - chr4.3:69670889-69670908 None:intergenic 60.0%
TCAGCACTAGTCCTCCCTGC+AGG - chr4.3:69672028-69672047 None:intergenic 60.0%
! GCAGGGAGGACTAGTGCTGA+TGG + chr4.3:69672028-69672047 MS.gene88031:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 69668740 69673187 69668740 ID=MS.gene88031
chr4.3 mRNA 69668740 69673187 69668740 ID=MS.gene88031.t1;Parent=MS.gene88031
chr4.3 exon 69668740 69668788 69668740 ID=MS.gene88031.t1.exon1;Parent=MS.gene88031.t1
chr4.3 CDS 69668740 69668788 69668740 ID=cds.MS.gene88031.t1;Parent=MS.gene88031.t1
chr4.3 exon 69668880 69668966 69668880 ID=MS.gene88031.t1.exon2;Parent=MS.gene88031.t1
chr4.3 CDS 69668880 69668966 69668880 ID=cds.MS.gene88031.t1;Parent=MS.gene88031.t1
chr4.3 exon 69669723 69669856 69669723 ID=MS.gene88031.t1.exon3;Parent=MS.gene88031.t1
chr4.3 CDS 69669723 69669856 69669723 ID=cds.MS.gene88031.t1;Parent=MS.gene88031.t1
chr4.3 exon 69670653 69670711 69670653 ID=MS.gene88031.t1.exon4;Parent=MS.gene88031.t1
chr4.3 CDS 69670653 69670711 69670653 ID=cds.MS.gene88031.t1;Parent=MS.gene88031.t1
chr4.3 exon 69670784 69670838 69670784 ID=MS.gene88031.t1.exon5;Parent=MS.gene88031.t1
chr4.3 CDS 69670784 69670838 69670784 ID=cds.MS.gene88031.t1;Parent=MS.gene88031.t1
chr4.3 exon 69671113 69671163 69671113 ID=MS.gene88031.t1.exon6;Parent=MS.gene88031.t1
chr4.3 CDS 69671113 69671163 69671113 ID=cds.MS.gene88031.t1;Parent=MS.gene88031.t1
chr4.3 exon 69671844 69671883 69671844 ID=MS.gene88031.t1.exon7;Parent=MS.gene88031.t1
chr4.3 CDS 69671844 69671883 69671844 ID=cds.MS.gene88031.t1;Parent=MS.gene88031.t1
chr4.3 exon 69672032 69672072 69672032 ID=MS.gene88031.t1.exon8;Parent=MS.gene88031.t1
chr4.3 CDS 69672032 69672072 69672032 ID=cds.MS.gene88031.t1;Parent=MS.gene88031.t1
chr4.3 exon 69672142 69672246 69672142 ID=MS.gene88031.t1.exon9;Parent=MS.gene88031.t1
chr4.3 CDS 69672142 69672246 69672142 ID=cds.MS.gene88031.t1;Parent=MS.gene88031.t1
chr4.3 exon 69672469 69672516 69672469 ID=MS.gene88031.t1.exon10;Parent=MS.gene88031.t1
chr4.3 CDS 69672469 69672516 69672469 ID=cds.MS.gene88031.t1;Parent=MS.gene88031.t1
chr4.3 exon 69672785 69672904 69672785 ID=MS.gene88031.t1.exon11;Parent=MS.gene88031.t1
chr4.3 CDS 69672785 69672904 69672785 ID=cds.MS.gene88031.t1;Parent=MS.gene88031.t1
chr4.3 exon 69673110 69673187 69673110 ID=MS.gene88031.t1.exon12;Parent=MS.gene88031.t1
chr4.3 CDS 69673110 69673187 69673110 ID=cds.MS.gene88031.t1;Parent=MS.gene88031.t1
Gene Sequence

>MS.gene88031

ATGGAAGAATATTTGCAATACATGAAGACTTTACGCTCTCACATGAACGGTACGTACCTTACAATTCTTCAATCCTTTTCACTTCATCAAACCTAATTTTACATCAAAATCTGAATTCGAATTCTGAAAACTGATTTCAGATGCGGAGGATCAAGCCGCAAAGATTTCCGCTGAAGAACAAATGCAGATGACGAACATTCGCACTCTTGAAATCGACATCGATTCAGGTTTCGTTTCAATTTCGTGTTCAATTTTAGTGTTTATGGTCTAAGAAACGAAACAATCAAAATTTGTGGTTATTTCGTAGATTTTGAATCTCATACATCACAATCTCTTGCTATCATATATTGCGGTTCAGTTTTTCTTTAAATTCGCATTGCGTTTAATGTCATTTACTCATTTCCACGGATCCAAACACTGTTCTTAGTCTAAGAGCTGAAACAAACACAATTGTTAATATATGTTACGAAATTTCTCACTATTTGTATACAGTGGTTTAGTTTTCATTCATAATTGCGTTGTTTTAATGTAATTTTCATCGATCCGGACTGTCTGTAGTGTAAGAAGTGAAACAATCAAAATTTCTATAGTATTGGTAGATTTGGAATCTCATACATGAAATTTTTCACTATCATATGCTGCGGTTTAGTTTTTCTTCGGATTTGCATTGCGTTTTAGTGTAATTTTCATTGATCCAAACTTAGTCTATAGCTGAAGAACTGAAACAATCAAAATTGCTATAGTATTCTTAGATTTGGAATCTCATACATCAAAATTTCTCATTATCAAATGCAACTGTTTAGTTTTCGTTCCGATTCACGTTGTGTTTTAATGTCATTTTCTTGGATCTGAACACTGTCTGTAGTCTAAGAAGTGAAACAATCAAAATTTTGTAAATATATGGAAGTGGAACCTCAGATTGTAATTATCTGTAAATTTTCGATCTGGTACTTTTAAAAAAATTATAATATTATTATATGCAGCGAAATCTGAAATTGCGCAAGTGGTTGAGGATACGGAAAAGATGAATAAGTCGAAGGTTGAGATTTGCTCAAAGATATTTGAAAACCAGAAAAAGCTTGCTTCGTTGGATTCTGATACATCCAGACTTACACAGGTAAAAAGGATTGTGTCCTTTGATATTGTTAAAGTTAATTCCATTTGCAATGTGAAACTGAAGCAATGGTGAATCTAATTTTTATAACTAAACTTGGTTTTTGTTTTTTATTGTGTAATCAATGGTCCTTTCTAGTGGAATGCATGATATATTCGATTTCATCAGTTAATGTTTTGGTTTTTGAGCAGACATAAATAGTTATTATATCATAAACATTTAGGTTTGGTAAGTTATTTGTGCTCTATATACCTTTACATTCTTAATGTAAAAATAGAATTTGAGGTGGATGTGAAGAAAAGAGAGGACCTGACTGTTTCCATATGCTGTATTGGGACTAATAATAGCTTGTGAGCATATTACAAGCAAAAGATTTATGTTTTTTTTCAACTAGCCACACTAATGCTTATATTATGACTTAAGAGATAAGTGCAAATAAACTTGCATGAAAAGTCATGTGCTATTACACTACACACATCAACTTGTAGTACAAACTAACATGTAAAAGCTAGAAATTTATGACTGTAACAATATATTTTTAAAAATTAATTAATTGTTGTGTCATTGATTTGACTTTCGAATTAAGTGTGAAGTCCGGAGTCAATTTGGTAGTAAAAACTTTGTATAACTCTTTACGGGGCTTTGGGATTGATTACGAAGAATTTGGATCTTATTTCTTGTTTTGATATATGCCTTGATAATGATGAAATAAAAAGAAAAGAAAAGCCAGGAGAGGAAAAAAAAATCTGATGCCTTGTTATGCGTTTCTGATGTTGTTCATGAATATTTCTTCCCATAGACTATGGAGCTTATTCGGCAAGAGAAAGTTGGATTATCTGCTAAACTATCACAGAGGAGGTAAATGAGGATACTGAGTGAGTGTCTTTGTACATTTTATGGTTATCCATCTAAATTGATTTTCATTTTCAGAGCCTACTATAGCAAGGTTGCAGAGGACATGAGGGTCAAATTCCAAAAGCAACAGGTTTGCTCTTATTATTGGATTTGATATGAATGGTGCATAGTTCTTTACCTTTGGAGTGGCAGGCTCGATGCATGAAATAATAGACACCTGGAAACAAATGTTGACATCAAAAGGTGAATTAATCAGGGAAATAACACCATTTGAAATACATGGTCAGCATGGAAATTTGGTTTCACTGTTTTTCACTCAGATAGAAACATTAATGATTAAGACCCTCAATGTTTTAATTTGTTCTTTCACGGAGTTCGTTGCAACTAATAGAAATCTTTGGCAGGAATGGATCAGAACTAAGAAGATTAGCATGGAACTGAAAGAGCATGAGTTTGTACGCCTTTTCCTTATTCATACAAATATATTGAGATCATTAGGATTATTATTTTTTTGACAGCAACCATAATTTTATTAGGAAATAGAAATCAGAGTTACAGCAGCATTGGTTTCAGACTGAGTTGAGACAGACCCCAACCAAGTCCTACGACCAACATGTTTTGACAAACTAATTAGGCTATAAGAAACAGAATTTAAACAATGCTTAACAAAGACAATATTTGCTATGTCCAGTTCTGACATAAGCTCCTTGCAGTATTGAATGATATGATCAATAGAAGACACAACTGATTTAGAATGATATGAAACAATAGTGACAGTGTTCCAATTTAGAGTTTTAACCATCGGCAATCCCCATCTAACCCCCAATGCTTCAGCAAGTACAGGGTCTGTTTCAATCGATTCTTTCGGGTATGCCGAGAGAGAAACTGAGTTGAATTGATCACCATTAAAATCTATTGGGTCCAACACCTAAAAAAAATCGAGTTGACTTTAAGCGGTTAGATCTCCCACATAAGGACATCATGTGAAGTCCACGCATGAGAGAATCCAAATACAATAAATCTGATAAGTTGTTAACCGAGATAAAATAAAGAAAATCTCCTTCAATTGTTAGATCTTATTTACCATCTTTACTGACAAGTTACTGCTAGTTACTTATATGTTGAATTTATGCAGGTCAACGATAAAGTTGATGAGCAAAGAAGTGAAGCTGAAGGCATGGCTAAACACTGAATTGAAAGTCCACATTTTTGTTTTTTGATATTAATCTTCTGGTTACAACTTACAAGTTTTTTGATATTTCAAAGCCGTTTTATGAAACTAAATTGATGTTCAAACATTCGTATAATGAACTTAACCTGCAGGGAGGACTAGTGCTGATGGTAACCGTGCCATAGATAACCTGGTATTTCACCTTTTTCATCAATCTGTGCTTCACAAAGTTGGAATCTGGTAATTTATCTTTGTCCGACAGGGGAGTGATGCAAAGAACAACTTAATCACCGACTTGGATTCAGCTAAAGCAAGGCTTGATGAGATTCTTGTTATGAAATCCAAGGTTCTCATGGACATTAACAAGGTACTTAATCACATCCTTTTTAGACTGTCAATTATTCATTACTCAAGTTATTGGTTGCTATTCATTACTCTAGTTATTGGTTGCTTATGTACTTAGTTTTGGTTCTGTGTATCATTTTTTTTGCACCATATGGTAAAGCATTTGAAACTTTGTTTCATATATCCCTTCCTTCTTCTCTTTATGCTTTCTTTGCTTCTTAATATTGTTTCTTTTTCATTCTAGATAAAACTTGCTATTGAGGATGTCAAGTGCAGAGAAAATGAGTTTAAGGTTTGTAATTCACTAGTTCTGCAGCAATTTTAGAATTGTGTGACTATCATGCACGTATATAGAGAGATGGAGAATACATTTTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACAAACACAGATATTTCTATATATTGATTTAGCTTTTCTCTTAACTGGAAACAATCAGTAATTTTGTGTCTTTTATTAAGTGATTTAGATTATCTTTAAGTTATTTAATTCTTTGTTCCAAATGAATGATCTAGCCTGAGCTAAAAGCAGCTGATATAACCGCTCTTGAAGAGGAATATAATGCTCTTTTGTCTGACAAAGCTGGAGAAACCGAATACTTGCAGTCTATGGAGAAACAAGTAGGGAAACTCAAGGTAAAATAGGTTTAGTCCAATGGAAAATTTTACAAGTTACTTAAAGTAATTATCAACAAAATAGGTATAACATGTATGTAAATGCAGACAACAAATATAAATAATCAAGTCGCAATATTTTACTGATTTTTTATCCTATGTAAAAGTCGAACAGATGTTTTAGTTTCCCCCCTTCAATCATGGATATATGCTTCTGATTTTACAGGAGATCAATCAACTTATAAAATGTGCTTGTGGTGAGGAATACAAAGTTGCATTGAATACACAGTTGCAGTGTACTTGA

Protein sequence

>MS.gene88031.t1

MEEYLQYMKTLRSHMNDAEDQAAKISAEEQMQMTNIRTLEIDIDSAKSEIAQVVEDTEKMNKSKVEICSKIFENQKKLASLDSDTSRLTQTMELIRQEKVGLSAKLSQRRAYYSKVAEDMRVKFQKQQEWIRTKKISMELKEHEFVNDKVDEQRSEAEGRTSADGNRAIDNLGSDAKNNLITDLDSAKARLDEILVMKSKVLMDINKIKLAIEDVKCRENEFKPELKAADITALEEEYNALLSDKAGETEYLQSMEKQVGKLKEINQLIKCACGEEYKVALNTQLQCT